Citrus Sinensis ID: 037027

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
AKNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ
Secondary Structure (PSIPRED)
cccccccccccccccEEEccccccEEEEEEcccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccEEccHHHHcccccccEEEccccccEEcccccccccccccEEEccccEEEEcccHHHHccccccEEEccccccEEcccccccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEccccccEEEEEEccccEEccccHHHHHcccccEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHccccccEEEccccEEEEEccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccc
Coil and Loop (DISEMBL)
aknwntsspvcnwtgvtcdvhshRVTVfnvsglnltgtipsqlgnlsslqSLNLSFnrlsgsipsatfITHTLKYVDlrgnqlsgafpsfifnksslqdldlsynalsgeipanicsnlpflEYISLSQnmfhggipsalskCTYLQILGlsfndfsgaipkeignvTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ
Flexible Loop (DISEMBL)
aknwntsspvcnwtgvtcdVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELElmslfdnelq
Low Complexity Region (SEG)
AKNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPsqlgnlsslqslnlsfnrlsGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ
Disordered region (IsUnstruct)
********PVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAEL***********
Disordered Region (DISOPRED)
AKNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL*
Disordered Region (DISEMBL)
********PVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ
Disordered Region (DISPRO)
******SSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AKNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q9M2Z1	1002	Leucine-rich repeat recep	yes	no	0.931	0.190	0.402	5e-32
C0LGT6	1031	LRR receptor-like serine/	no	no	0.965	0.192	0.386	3e-30
O49545	1003	Leucine-rich repeat recep	no	no	0.931	0.190	0.381	4e-29
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.990	0.184	0.353	4e-29
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.931	0.189	0.373	1e-28
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.751	0.123	0.414	1e-28
Q9FL28	1173	LRR receptor-like serine/	no	no	0.941	0.164	0.354	1e-28
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.951	0.193	0.382	5e-28
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.975	0.195	0.358	7e-28
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.960	0.178	0.370	7e-28

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  137 bits (345), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 123/194 (63%), Gaps = 3/194 (1%)

Query: 3   NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS 62
           +WN S+  C+WTGVTCDV    VT  ++SGLNL+GT+ S + +L  LQ+L+L+ N++SG 
Sbjct: 49  SWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQISGP 108

Query: 63  IPSATFITHTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPF 121
           IP      + L++++L  N  +G+FP  + +   +L+ LDL  N L+G++P ++ +NL  
Sbjct: 109 IPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSL-TNLTQ 167

Query: 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYL-VRNRL 180
           L ++ L  N F G IP+       L+ L +S N+ +G IP EIGN+T L+ELY+   N  
Sbjct: 168 LRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAF 227

Query: 181 QGEIPRELSNLAEL 194
           +  +P E+ NL+EL
Sbjct: 228 ENGLPPEIGNLSEL 241

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 105/199 (52%), Gaps = 1/199 (0%)

Query: 4   WNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSI 63
           WN SSP CNW GVTC     RV   N+ G  LTG I   +GNLS L+ LNL+ N    +I
Sbjct: 54  WNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTI 113

Query: 64  PSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE 123
           P        L+Y+++  N L G  PS + N S L  +DLS N L   +P+ + S L  L 
Sbjct: 114 PQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGS-LSKLA 172

Query: 124 YISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGE 183
            + LS+N   G  P++L   T LQ L  ++N   G IP E+  +T++    +  N   G 
Sbjct: 173 ILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGG 232

Query: 184 IPRELSNLAELELMSLFDN 202
            P  L N++ LE +SL DN
Sbjct: 233 FPPALYNISSLESLSLADN 251

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  127 bits (320), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 116/194 (59%), Gaps = 3/194 (1%)

Query: 3   NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS 62
           +W  S+  C W GVTCDV    VT  ++SGLNL+GT+   + +L  LQ+L+L+ N +SG 
Sbjct: 49  SWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLSPDVSHLRLLQNLSLAENLISGP 108

Query: 63  IPSATFITHTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPF 121
           IP        L++++L  N  +G+FP  I +   +L+ LD+  N L+G++P ++ +NL  
Sbjct: 109 IPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVLDVYNNNLTGDLPVSV-TNLTQ 167

Query: 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYL-VRNRL 180
           L ++ L  N F G IP +      ++ L +S N+  G IP EIGN+T L+ELY+   N  
Sbjct: 168 LRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNLTTLRELYIGYYNAF 227

Query: 181 QGEIPRELSNLAEL 194
           +  +P E+ NL+EL
Sbjct: 228 EDGLPPEIGNLSEL 241

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  127 bits (320), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 114/229 (49%), Gaps = 26/229 (11%)

Query: 2   KNWNTSSPV-CNWTGVTCDVHSH--RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNR 58
           +NWN++  V C WTGV C  +S    V   N+S + L+G +   +G L  L+ L+LS+N 
Sbjct: 49  RNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNG 108

Query: 59  LSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANI--- 115
           LSG IP       +L+ + L  NQ  G  P  I    SL++L +  N +SG +P  I   
Sbjct: 109 LSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNL 168

Query: 116 --------------------CSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFND 155
                                 NL  L      QNM  G +PS +  C  L +LGL+ N 
Sbjct: 169 LSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQ 228

Query: 156 FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            SG +PKEIG + KL ++ L  N   G IPRE+SN   LE ++L+ N+L
Sbjct: 229 LSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQL 277

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 109/193 (56%), Gaps = 2/193 (1%)

Query: 3   NWNTSSPVCNWTGVTCDVH-SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSG 61
           N ++S+  CNWTG+TC+ + + RV    +    L+G +   LG L  ++ LNLS N +  
Sbjct: 55  NSSSSTDCCNWTGITCNSNNTGRVIRLELGNKKLSGKLSESLGKLDEIRVLNLSRNFIKD 114

Query: 62  SIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF 121
           SIP + F    L+ +DL  N LSG  P+ I N  +LQ  DLS N  +G +P++IC N   
Sbjct: 115 SIPLSIFNLKNLQTLDLSSNDLSGGIPTSI-NLPALQSFDLSSNKFNGSLPSHICHNSTQ 173

Query: 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181
           +  + L+ N F G   S   KC  L+ L L  ND +G IP+++ ++ +L  L +  NRL 
Sbjct: 174 IRVVKLAVNYFAGNFTSGFGKCVLLEHLCLGMNDLTGNIPEDLFHLKRLNLLGIQENRLS 233

Query: 182 GEIPRELSNLAEL 194
           G + RE+ NL+ L
Sbjct: 234 GSLSREIRNLSSL 246

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 107/181 (59%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
           + + N++  +LTG IPSQLG +S LQ L+L  N+L G IP +      L+ +DL  N L+
Sbjct: 241 LEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLT 300

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
           G  P   +N S L DL L+ N LSG +P +ICSN   LE + LS     G IP  LSKC 
Sbjct: 301 GEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQ 360

Query: 145 YLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            L+ L LS N  +G+IP+ +  + +L +LYL  N L+G +   +SNL  L+ + L+ N L
Sbjct: 361 SLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNL 420

Query: 205 Q 205
           +
Sbjct: 421 E 421

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 111/217 (51%), Gaps = 24/217 (11%)

Query: 11  CNWTGVTCDVHSHRVTV-----------------------FNVSGLNLTGTIPSQLGNLS 47
           CNWTG+TCD   H V+V                        +++  + TG IP+++G L+
Sbjct: 61  CNWTGITCDSTGHVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLT 120

Query: 48  SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNAL 107
            L  L L  N  SGSIPS  +    + Y+DLR N LSG  P  I   SSL  +   YN L
Sbjct: 121 ELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNL 180

Query: 108 SGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNV 167
           +G+IP  +  +L  L+    + N   G IP ++     L  L LS N  +G IP++ GN+
Sbjct: 181 TGKIPECL-GDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNL 239

Query: 168 TKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
             L+ L L  N L+G+IP E+ N + L  + L+DN+L
Sbjct: 240 LNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQL 276

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  124 bits (311), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/196 (38%), Positives = 106/196 (54%), Gaps = 1/196 (0%)

Query: 4   WNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSI 63
           WN S P+CNW GVTC   + RVT   +  L L G I   +GNLS L SL+L  N   G+I
Sbjct: 47  WNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTI 106

Query: 64  PSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE 123
           P        L+Y+D+  N L G  P  ++N S L +L L  N L G +P+ + S L  L 
Sbjct: 107 PQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGS-LTNLV 165

Query: 124 YISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGE 183
            ++L  N   G +P++L   T L+ L LS N+  G IP ++  +T++  L LV N   G 
Sbjct: 166 QLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGV 225

Query: 184 IPRELSNLAELELMSL 199
            P  L NL+ L+L+ +
Sbjct: 226 FPPALYNLSSLKLLGI 241

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  123 bits (309), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 15/215 (6%)

Query: 4   WNTSSP----VCNWTGVTC---------DV-HSHRVTVFNVSGLNLTGTIPSQLGNLSSL 49
           WN SS      C+W G++C         DV  S RV    +    L+G +   +  L  L
Sbjct: 53  WNESSSFSSNCCDWVGISCKSSVSLGLDDVNESGRVVELELGRRKLSGKLSESVAKLDQL 112

Query: 50  QSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSG 109
           + LNL+ N LSGSI ++      L+ +DL  N  SG FPS I N  SL+ L++  N+  G
Sbjct: 113 KVLNLTHNSLSGSIAASLLNLSNLEVLDLSSNDFSGLFPSLI-NLPSLRVLNVYENSFHG 171

Query: 110 EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTK 169
            IPA++C+NLP +  I L+ N F G IP  +  C+ ++ LGL+ N+ SG+IP+E+  ++ 
Sbjct: 172 LIPASLCNNLPRIREIDLAMNYFDGSIPVGIGNCSSVEYLGLASNNLSGSIPQELFQLSN 231

Query: 170 LKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
           L  L L  NRL G +  +L  L+ L  + +  N+ 
Sbjct: 232 LSVLALQNNRLSGALSSKLGKLSNLGRLDISSNKF 266

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  123 bits (309), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 119/224 (53%), Gaps = 27/224 (12%)

Query: 4   WNT-SSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGT------------------------ 38
           WN   S  CNWTG+ C  H   VT  +++G+NL+GT                        
Sbjct: 48  WNQLDSNPCNWTGIAC-THLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGP 106

Query: 39  IPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ 98
           IP  L    SL+ L+L  NR  G IP    +  TLK + L  N L G+ P  I N SSLQ
Sbjct: 107 IPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQ 166

Query: 99  DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSG 158
           +L +  N L+G IP ++ + L  L  I   +N F G IPS +S C  L++LGL+ N   G
Sbjct: 167 ELVIYSNNLTGVIPPSM-AKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEG 225

Query: 159 AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
           ++PK++  +  L +L L +NRL GEIP  + N++ LE+++L +N
Sbjct: 226 SLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHEN 269

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
359485176	1160	PREDICTED: probable LRR receptor-like se	0.995	0.175	0.392	2e-37
224139658	1019	predicted protein [Populus trichocarpa]	0.980	0.197	0.402	1e-36
302143445	2843	unnamed protein product [Vitis vinifera]	0.990	0.071	0.4	2e-36
147853795	1420	hypothetical protein VITISV_005816 [Viti	0.965	0.139	0.406	3e-35
359483198	1087	PREDICTED: probable LRR receptor-like se	0.824	0.155	0.494	8e-35
255578886	1043	serine-threonine protein kinase, plant-t	0.951	0.186	0.398	2e-34
359485451	1454	PREDICTED: LRR receptor-like serine/thre	0.995	0.140	0.405	2e-34
298204751	1979	unnamed protein product [Vitis vinifera]	0.990	0.102	0.4	3e-34
147852480	1229	hypothetical protein VITISV_039533 [Viti	1.0	0.166	0.367	1e-33
356510768	1214	PREDICTED: probable LRR receptor-like se	0.980	0.165	0.396	1e-33

>gi|359485176|ref|XP_002280075.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/252 (39%), Positives = 138/252 (54%), Gaps = 48/252 (19%)

Query: 1   AKNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFN--- 57
           A NW+T++  CNW GV+CD    RV   ++S ++L GTI  Q+GNLS L +L+LS N   
Sbjct: 54  ATNWSTTTSYCNWFGVSCDAARQRVIALDLSNMDLEGTIAPQVGNLSFLVTLDLSNNSFH 113

Query: 58  ---------------------RLSGSIPSATF----------------------ITH--T 72
                                RL+GSIP A                        I+H  +
Sbjct: 114 ASIPNEIAKCRELRQLYLFNNRLTGSIPQAIGNLSKLEQLYLGGNQLTGEIPREISHLLS 173

Query: 73  LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
           LK +  R N L+ + PS IFN SSLQ + L+YN+LSG +P ++C +LP L  + LS N  
Sbjct: 174 LKILSFRSNNLTASIPSAIFNISSLQYIGLTYNSLSGTLPMDMCYSLPKLRGLYLSGNQL 233

Query: 133 HGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLA 192
            G IP++L KC  L+ + LSFN+F G+IP+ IG+++ L+ LYL  N L+GEIP+ L NL+
Sbjct: 234 SGKIPTSLGKCGRLEEISLSFNEFMGSIPRGIGSLSVLEVLYLGSNNLEGEIPQTLFNLS 293

Query: 193 ELELMSLFDNEL 204
            L    L  N L
Sbjct: 294 SLRNFELGSNNL 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139658|ref|XP_002323215.1| predicted protein [Populus trichocarpa] gi|222867845|gb|EEF04976.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 123/226 (54%), Gaps = 25/226 (11%)

Query: 4   WNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSI 63
           W++ +  CNW GV+C +   RVT  ++S + L GTIP QLGNLS LQ L L  N   G +
Sbjct: 54  WSSKTSFCNWMGVSCSLRRQRVTALDLSSMGLLGTIPPQLGNLSFLQYLILYNNSFHGDL 113

Query: 64  PSATFITHTLKYVDL-------------------------RGNQLSGAFPSFIFNKSSLQ 98
           PS       L+ +D+                          GN L+G  PS IFN SSL+
Sbjct: 114 PSEIGNLRRLQVMDIGSNKLSLVIVPESFGNLHRLEELRFDGNNLTGTIPSTIFNISSLK 173

Query: 99  DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSG 158
            LDL +N L G +P N+C +LP LE + LS N   G IPS L KC  LQ+L L +N+F+G
Sbjct: 174 VLDLMFNGLFGSLPKNMCDHLPRLEMLLLSSNQLSGQIPSDLFKCRELQLLWLPYNNFTG 233

Query: 159 AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            IP+E+G +  L+ L L  N L G++PR + N+  L  M +  N L
Sbjct: 234 VIPEELGFLPMLEVLNLGVNMLSGDLPRSIFNMTSLRTMQICCNNL 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143445|emb|CBI22006.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 133/230 (57%), Gaps = 27/230 (11%)

Query: 3    NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLS--------------- 47
            NW+T S  C W G++C+    RV+  N+S + L GTI  Q+GNLS               
Sbjct: 1066 NWSTKSSYCTWYGISCNAPQQRVSAINLSNMGLEGTIAPQVGNLSFLISLDLSNNYFHAF 1125

Query: 48   ---------SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP---SFIFNKS 95
                      LQ LNL  N L GSIP A      L+ + L  N+L+G  P   + IFN S
Sbjct: 1126 LPKEIGKCKELQQLNLFNNNLVGSIPEAICNLSKLEELYLGNNKLAGEIPKKMTTIFNIS 1185

Query: 96   SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFND 155
            SL ++ LSYN+LSG +P  +C+  P L+ ++LS N   G IP++LS+C  LQ++ LS+N+
Sbjct: 1186 SLLNISLSYNSLSGNLPMVMCNTNPKLKELNLSSNHLSGEIPTSLSQCIKLQVISLSYNE 1245

Query: 156  FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            F+G+IPK IGN+ +L+ L    N L GEIP+ L N++ L  ++L  N+L+
Sbjct: 1246 FTGSIPKGIGNLVELQRLSFRNNNLIGEIPQSLFNISSLRFLNLAANQLE 1295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853795|emb|CAN81714.1| hypothetical protein VITISV_005816 [Vitis vinifera]

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 124/204 (60%), Gaps = 6/204 (2%)

Query: 1   AKNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLS 60
           A NW+T S  C+W G++C+    RV+  N+S + L GTI  Q+GNLS L SL+LS N   
Sbjct: 29  ATNWSTKSSYCSWYGISCNAPQQRVSAINLSNMGLQGTIVPQVGNLSFLVSLDLSNNYFH 88

Query: 61  GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP 120
            S+P        +  + L      G+ P+ IFN SSL  + LSYN+LSG +P ++C+  P
Sbjct: 89  ASLPK------DIXKILLXFVYFIGSIPATIFNISSLLKISLSYNSLSGSLPMDMCNTNP 142

Query: 121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180
            L+ ++L+ N   G  P+ L +CT LQ + LS+N+F+G+IP+ IGN+ +L+ L L  N L
Sbjct: 143 KLKELNLTSNHLSGKXPTGLGQCTKLQGISLSYNEFTGSIPRAIGNLVELQSLSLXNNSL 202

Query: 181 QGEIPRELSNLAELELMSLFDNEL 204
            GEIP+ L  ++ L  + L +N L
Sbjct: 203 TGEIPQSLFKISSLRFLRLGENNL 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483198|ref|XP_002271405.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 115/170 (67%), Gaps = 1/170 (0%)

Query: 36  TGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKS 95
           TGTIP  +GN+S L++L L  N L G+IP       T+K +D++ NQL GA PS IFN S
Sbjct: 159 TGTIPPSIGNMSMLETLGLGGNHLQGNIPEEIGKLSTMKILDIQSNQLVGAIPSAIFNIS 218

Query: 96  SLQDLDLSYNALSGEIPANICSN-LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFN 154
           SLQ++ L+YN+LSG++P+++C++ L  L  I LS N F G IPS LSKC  LQ L LSFN
Sbjct: 219 SLQEIALTYNSLSGDLPSSMCNHELSALRGIRLSANRFTGPIPSNLSKCGELQTLYLSFN 278

Query: 155 DFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            F+G IP+ I ++TKL  L L  N L GE+P E+ +L  L ++++ DN L
Sbjct: 279 KFTGGIPRSIDSLTKLTMLSLAANSLSGEVPCEIGSLCTLNVLNIEDNSL 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578886|ref|XP_002530297.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223530195|gb|EEF32104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 118/221 (53%), Gaps = 26/221 (11%)

Query: 1   AKNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLS 60
           A NW+ ++ VC W GVTC     RVT  ++S + LTGTIP  LGNLS L  ++   NR  
Sbjct: 54  AANWSITTSVCTWVGVTCGARHGRVTALDLSDMGLTGTIPPHLGNLSFLAFISFYNNRFH 113

Query: 61  GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA-------------- 106
           GS+P        +K   +  N  SG  PS+I + + LQ L LS N               
Sbjct: 114 GSLPDELSKLRRIKAFGMSTNYFSGEIPSWIGSFTQLQRLSLSSNKFTGLLPAILANNTI 173

Query: 107 ------------LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFN 154
                       L+G +P NI ++L  L  + L+ N+F+G IPS L  C  L++L LSFN
Sbjct: 174 SSLWLLDFGTNNLTGRLPPNIFTHLANLRALYLNSNLFNGPIPSTLMACQQLKLLALSFN 233

Query: 155 DFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELE 195
            F G+I K+IGN+T L+ELYL  N   G IP E+ +LA LE
Sbjct: 234 HFEGSIHKDIGNLTMLQELYLGGNNFSGTIPDEIGDLAHLE 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485451|ref|XP_002276944.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 127/207 (61%), Gaps = 3/207 (1%)

Query: 1   AKNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLS 60
           A NW+T S  C+W G++C+    RV+  N+S + L GTI SQ+GNLS L SL+LS N   
Sbjct: 29  ATNWSTKSSYCSWYGISCNAPQQRVSAINLSNMGLQGTIVSQVGNLSFLVSLDLSNNYFH 88

Query: 61  GSIPS---ATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICS 117
            S+P    A      L+ + L  NQL+G  P    +  +L+ L L  N L+G IPA I +
Sbjct: 89  ASLPKDIEAICNLSKLEELYLGNNQLTGEIPKTFSHLRNLKILSLRMNNLTGSIPATIFN 148

Query: 118 NLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVR 177
             P L+ ++L+ N   G IP++L +CT LQ++ LS+N+ +G++P+ IGN+ +L+ L L+ 
Sbjct: 149 TNPNLKELNLTSNNLSGKIPTSLGQCTKLQVISLSYNELTGSMPRAIGNLVELQRLSLLN 208

Query: 178 NRLQGEIPRELSNLAELELMSLFDNEL 204
           N L GEIP+ L N++ L  + L +N L
Sbjct: 209 NSLTGEIPQSLLNISSLRFLRLGENNL 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204751|emb|CBI25249.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/255 (40%), Positives = 134/255 (52%), Gaps = 52/255 (20%)

Query: 1   AKNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLS----- 55
           A NW+T +  C W GV+C+    RV   ++S L L GTIP  LGNLS L SL+LS     
Sbjct: 527 AGNWSTKTSFCEWIGVSCNAQQQRVIALDLSNLGLRGTIPPDLGNLSFLVSLDLSSNNFH 586

Query: 56  ---------FNRL----------SGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSS 96
                     NRL          +G+IP +      L+ +D++ NQL GA PS IFN SS
Sbjct: 587 GPIPPSFGNLNRLQSLFLGNNSFTGTIPPSIGNMSMLETLDIQSNQLVGAIPSAIFNISS 646

Query: 97  LQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSK-------------- 142
           LQ++ L+YN+LSG IP  I S LP LEY+ L  N F   IPSA+ K              
Sbjct: 647 LQEIALTYNSLSGTIPEEI-SFLPSLEYLYLRSNSFTSPIPSAIFKISTLKAIDLGKNGF 705

Query: 143 ---------CTY---LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL-QGEIPRELS 189
                    C +   LQ++GL  N F+G I   IGN T L+ELYL  N L  GE+P E+ 
Sbjct: 706 SGSMPLDIMCAHRPSLQLIGLDSNRFTGTIHGGIGNCTSLRELYLSSNDLTAGEVPCEIG 765

Query: 190 NLAELELMSLFDNEL 204
           +L  L ++++ DN L
Sbjct: 766 SLCTLNVLNIEDNSL 780

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852480|emb|CAN78527.1| hypothetical protein VITISV_039533 [Vitis vinifera]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/253 (36%), Positives = 131/253 (51%), Gaps = 48/253 (18%)

Query: 1   AKNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLS------------- 47
           A NW+T S  CNW G++C+    RV+  N+S + L GTI  Q+GNLS             
Sbjct: 29  ATNWSTKSSYCNWYGISCNAPQQRVSAINLSNMGLEGTIAPQVGNLSFLISLDLSNNYFH 88

Query: 48  -----------SLQSLNLSFNRLSGSIPSATF----------------------ITH--T 72
                       LQ LNL  N+L G IP A                        + H   
Sbjct: 89  DSLPKDIGKCKELQQLNLFNNKLVGGIPEAICNLSKLEELYLGNNQLIGEIPKKMNHLQN 148

Query: 73  LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
           LK +    N L+G  P+ IFN SSL ++ LS N LSG +P ++C   P L+ ++LS N  
Sbjct: 149 LKVLSFPMNNLTGFIPATIFNISSLLNISLSNNNLSGSLPMDMCYANPKLKELNLSSNHL 208

Query: 133 HGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLA 192
            G IP+ L +C  LQ++ L++NDF+G+IP  IGN+ +L+ L L  N L GEIP+ L N++
Sbjct: 209 SGKIPTGLGQCLKLQVISLAYNDFTGSIPSGIGNLVELQRLSLQNNSLTGEIPQLLFNIS 268

Query: 193 ELELMSLFDNELQ 205
            L L++L  N L+
Sbjct: 269 SLRLLNLAVNNLE 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510768|ref|XP_003524106.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/202 (39%), Positives = 116/202 (57%), Gaps = 1/202 (0%)

Query: 3   NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS 62
           NW+ ++ VCNW GVTCD +  RV   N+  ++L+G +PS LGNL+ L  L+L  N+  G 
Sbjct: 56  NWSATTSVCNWVGVTCDAYHGRVRTLNLGDMSLSGIMPSHLGNLTFLNKLDLGGNKFHGQ 115

Query: 63  IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL 122
           +P      H LK+++L  N+ SG    +I   S+L+ L+L  N   G IP +I SNL  L
Sbjct: 116 LPEELVQLHRLKFLNLSYNEFSGNVSEWIGGLSTLRYLNLGNNDFGGFIPKSI-SNLTML 174

Query: 123 EYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG 182
           E +    N   G IP  + K T L++L +  N  SG IP+ + N++ L+ + L  N L G
Sbjct: 175 EIMDWGNNFIQGTIPPEVGKMTQLRVLSMYSNRLSGTIPRTVSNLSSLEGISLSYNSLSG 234

Query: 183 EIPRELSNLAELELMSLFDNEL 204
            IP E+  L +LE+M L DN L
Sbjct: 235 GIPSEIGELPQLEIMYLGDNPL 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.931	0.190	0.360	1.5e-27
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.956	0.172	0.375	8.4e-27
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.985	0.214	0.365	3.1e-25
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.975	0.223	0.354	3.7e-25
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.931	0.190	0.345	4.5e-25
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.975	0.281	0.357	1.3e-24
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.970	0.207	0.351	1.4e-24
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.970	0.193	0.34	1.6e-24
TAIR|locus:2051628	1008	PSKR1 "phytosulfokin receptor	0.980	0.199	0.323	6.8e-24
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.965	0.158	0.359	7.4e-24

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 70/194 (36%), Positives = 108/194 (55%)

Query:     3 NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGS 62
             +WN S+  C+WTGVTCDV    VT  ++SGLNL+GT+                     G 
Sbjct:    49 SWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQISGP 108

Query:    63 IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKS-SLQDLDLSYNALSGEIPANICSNLPF 121
             IP      + L++++L  N  +G+FP  + +   +L+ LDL  N L+G++P ++ +NL  
Sbjct:   109 IPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSL-TNLTQ 167

Query:   122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYL-VRNRL 180
             L ++ L  N F G IP+       L+ L +S N+ +G IP EIGN+T L+ELY+   N  
Sbjct:   168 LRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAF 227

Query:   181 QGEIPRELSNLAEL 194
             +  +P E+ NL+EL
Sbjct:   228 ENGLPPEIGNLSEL 241

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 8.4e-27, P = 8.4e-27
 Identities = 77/205 (37%), Positives = 111/205 (54%)

Query:     3 NWNTSSPV--CNWTGVTCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXX 60
             +W+ S+P   C+W GV C   +HRVT   +  L L+G I                     
Sbjct:    48 SWDPSTPAAPCDWRGVGCT--NHRVTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFN 105

Query:    61 GSIP-SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL 119
             G+IP S  + T  L  V L+ N LSG  P  + N +SL+  +++ N LSGEIP  + S+L
Sbjct:   106 GTIPTSLAYCTRLLS-VFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSGEIPVGLPSSL 164

Query:   120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179
              FL+   +S N F G IPS L+  T LQ+L LS+N  +G IP  +GN+  L+ L+L  N 
Sbjct:   165 QFLD---ISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNL 221

Query:   180 LQGEIPRELSNLAELELMSLFDNEL 204
             LQG +P  +SN + L  +S  +NE+
Sbjct:   222 LQGTLPSAISNCSSLVHLSASENEI 246

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 3.1e-25, P = 3.1e-25
 Identities = 75/205 (36%), Positives = 98/205 (47%)

Query:     2 KNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXX- 60
             ++W  +S  CNW G+TCD  S  V   ++S   L G+                       
Sbjct:    78 ESWRNNSDCCNWEGITCDTKSGEVIELDLSCSWLYGSFHSNSSLFRLQNLRVLDLTQNDL 137

Query:    61 -GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL 119
              G IPS+      L  + L  NQ  G  PS I N S L  L LS N  SG+IP++I  NL
Sbjct:   138 DGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIPSSI-GNL 196

Query:   120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179
               L  + LS N F G IPS++   + L  L L  NDF G IP  IGN+ +L  LYL  N 
Sbjct:   197 SHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNN 256

Query:   180 LQGEIPRELSNLAELELMSLFDNEL 204
               GEIP    NL +L ++ +  N+L
Sbjct:   257 FVGEIPSSFGNLNQLIVLQVDSNKL 281

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 3.7e-25, P = 3.7e-25
 Identities = 72/203 (35%), Positives = 102/203 (50%)

Query:     2 KNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXX- 60
             ++W  +S  CNW GVTC+  S  V   N+S  +L G                        
Sbjct:    11 ESWGNNSDCCNWEGVTCNAKSGEVIELNLSCSSLHGRFHSNSSIRNLHFLTTLDRSHNDF 70

Query:    61 -GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL 119
              G I S+      L  +DL  N+ SG   + I N S L  LDLS+N  SG+IP++I  NL
Sbjct:    71 EGQITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQFSGQIPSSI-GNL 129

Query:   120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179
               L ++ LS N F G IPS++   ++L  LGLS N F G  P  IG ++ L  L+L  N+
Sbjct:   130 SHLTFLGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLSNLTNLHLSYNK 189

Query:   180 LQGEIPRELSNLAELELMSLFDN 202
               G+IP  + NL++L ++ L  N
Sbjct:   190 YSGQIPSSIGNLSQLIVLYLSVN 212

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 4.5e-25, P = 4.5e-25
 Identities = 67/194 (34%), Positives = 103/194 (53%)

Query:     3 NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGS 62
             +W  S+  C W GVTCDV    VT  ++SGLNL+GT+                     G 
Sbjct:    49 SWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLSPDVSHLRLLQNLSLAENLISGP 108

Query:    63 IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKS-SLQDLDLSYNALSGEIPANICSNLPF 121
             IP        L++++L  N  +G+FP  I +   +L+ LD+  N L+G++P ++ +NL  
Sbjct:   109 IPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVLDVYNNNLTGDLPVSV-TNLTQ 167

Query:   122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYL-VRNRL 180
             L ++ L  N F G IP +      ++ L +S N+  G IP EIGN+T L+ELY+   N  
Sbjct:   168 LRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNLTTLRELYIGYYNAF 227

Query:   181 QGEIPRELSNLAEL 194
             +  +P E+ NL+EL
Sbjct:   228 EDGLPPEIGNLSEL 241

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 73/204 (35%), Positives = 99/204 (48%)

Query:     2 KNW-NTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXX 60
             ++W N +S  CNW GVTC+  S  V   ++S   L G                       
Sbjct:    73 ESWGNNNSDCCNWEGVTCNAKSGEVIELDLSCSYLHGRFHSNSSIRNLHFLTTLDLSFND 132

Query:    61 --GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSN 118
               G I S+      L Y+DL  N  SG  PS I N S L  LDL  N  SG++P++I  N
Sbjct:   133 FKGQIMSSIENLSHLTYLDLSFNHFSGQVPSSIGNLSHLTFLDLYCNQFSGQVPSSI-GN 191

Query:   119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
             L  L  + LS N F G  PS++   ++L  L L  N+F G IP  IGN++ L  LYL +N
Sbjct:   192 LSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQIPSSIGNLSNLTSLYLCKN 251

Query:   179 RLQGEIPRELSNLAELELMSLFDN 202
                G+IP  + NL++L  + L  N
Sbjct:   252 NFSGQIPSFIGNLSQLTRLDLSSN 275

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 71/202 (35%), Positives = 97/202 (48%)

Query:     3 NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXX-- 60
             +W  +S  CNW GVTC+  S  V   ++S  +L G                         
Sbjct:    75 SWGNNSDCCNWEGVTCNAKSGEVIELDLSCSSLHGRFHSNSSIRNLHFLTTLDLSFNDFK 134

Query:    61 GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP 120
             G I S+      L Y+DL  N  SG   + I N S L  L+L  N  SG+ P++IC NL 
Sbjct:   135 GQITSSIENLSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSIC-NLS 193

Query:   121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180
              L ++ LS N F G  PS++   ++L  L L  N FSG IP  IGN++ L  L L  N  
Sbjct:   194 HLTFLDLSYNRFFGQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNF 253

Query:   181 QGEIPRELSNLAELELMSLFDN 202
              G+IP  + NL++L  + LF N
Sbjct:   254 SGQIPSFIGNLSQLTFLGLFSN 275

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 68/200 (34%), Positives = 94/200 (47%)

Query:     3 NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGS 62
             +WN SSP CNW GVTC     RV   N+ G  LTG I                      +
Sbjct:    53 SWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGST 112

Query:    63 IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL 122
             IP        L+Y+++  N L G  PS + N S L  +DLS N L   +P+ + S L  L
Sbjct:   113 IPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGS-LSKL 171

Query:   123 EYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG 182
               + LS+N   G  P++L   T LQ L  ++N   G IP E+  +T++    +  N   G
Sbjct:   172 AILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSG 231

Query:   183 EIPRELSNLAELELMSLFDN 202
               P  L N++ LE +SL DN
Sbjct:   232 GFPPALYNISSLESLSLADN 251

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2051628 PSKR1 "phytosulfokin receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 67/207 (32%), Positives = 104/207 (50%)

Query:     3 NWNTSSPVCNWTGVTCDVHSH-RVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXXG 61
             N ++S+  CNWTG+TC+ ++  RV    +    L+G +                      
Sbjct:    55 NSSSSTDCCNWTGITCNSNNTGRVIRLELGNKKLSGKLSESLGKLDEIRVLNLSRNFIKD 114

Query:    62 SIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF 121
             SIP + F    L+ +DL  N LSG  P+ I N  +LQ  DLS N  +G +P++IC N   
Sbjct:   115 SIPLSIFNLKNLQTLDLSSNDLSGGIPTSI-NLPALQSFDLSSNKFNGSLPSHICHNSTQ 173

Query:   122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181
             +  + L+ N F G   S   KC  L+ L L  ND +G IP+++ ++ +L  L +  NRL 
Sbjct:   174 IRVVKLAVNYFAGNFTSGFGKCVLLEHLCLGMNDLTGNIPEDLFHLKRLNLLGIQENRLS 233

Query:   182 GEIPRELSNLAELELM----SLFDNEL 204
             G + RE+ NL+ L  +    +LF  E+
Sbjct:   234 GSLSREIRNLSSLVRLDVSWNLFSGEI 260

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP;IDA

GO:0009611 "response to wounding" evidence=IGI

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0045087 "innate immune response" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 7.4e-24, P = 7.4e-24
 Identities = 73/203 (35%), Positives = 102/203 (50%)

Query:     2 KNWNTSSP-VCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXX 60
             ++WN+ SP  CNWTGVTC      +   N+SGL LTG+I                     
Sbjct:    51 RDWNSGSPSYCNWTGVTCG--GREIIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLV 108

Query:    61 GSIPSA-TFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL 119
             G IP+  + ++ +L+ + L  N LSG  PS + +  +L+ L L  N L+G IP     NL
Sbjct:   109 GPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETF-GNL 167

Query:   120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179
               L+ ++L+     G IPS   +   LQ L L  N+  G IP EIGN T L       NR
Sbjct:   168 VNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNR 227

Query:   180 LQGEIPRELSNLAELELMSLFDN 202
             L G +P EL+ L  L+ ++L DN
Sbjct:   228 LNGSLPAELNRLKNLQTLNLGDN 250

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-32
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  142 bits (359), Expect = 3e-39
 Identities = 91/227 (40%), Positives = 126/227 (55%), Gaps = 29/227 (12%)

Query: 3   NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPS--------QLGNLS------- 47
           NWN+S+ VC W G+TC+ +S RV   ++SG N++G I S        Q  NLS       
Sbjct: 50  NWNSSADVCLWQGITCN-NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP 108

Query: 48  ----------SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97
                     SL+ LNLS N  +GSIP  +     L+ +DL  N LSG  P+ I + SSL
Sbjct: 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSGEIPNDIGSFSSL 166

Query: 98  QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157
           + LDL  N L G+IP ++ +NL  LE+++L+ N   G IP  L +   L+ + L +N+ S
Sbjct: 167 KVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

Query: 158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
           G IP EIG +T L  L LV N L G IP  L NL  L+ + L+ N+L
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  121 bits (306), Expect = 4e-32
 Identities = 77/172 (44%), Positives = 98/172 (56%), Gaps = 1/172 (0%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
           NL+G IP ++G L+SL  L+L +N L+G IPS+      L+Y+ L  N+LSG  P  IF+
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 94  KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF 153
              L  LDLS N+LSGEIP  +   L  LE + L  N F G IP AL+    LQ+L L  
Sbjct: 283 LQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           N FSG IPK +G    L  L L  N L GEIP  L +   L  + LF N L+
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  116 bits (293), Expect = 3e-30
 Identities = 71/171 (41%), Positives = 93/171 (54%), Gaps = 1/171 (0%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
           NLTG IPS LGNL +LQ L L  N+LSG IP + F    L  +DL  N LSG  P  +  
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 94  KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF 153
             +L+ L L  N  +G+IP  + S LP L+ + L  N F G IP  L K   L +L LS 
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
           N+ +G IP+ + +   L +L L  N L+GEIP+ L     L  + L DN  
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  102 bits (255), Expect = 3e-25
 Identities = 65/163 (39%), Positives = 90/163 (55%), Gaps = 6/163 (3%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
           V   ++S  NL G I S+  ++ SLQ L+L+ N+  G +P  +F +  L+ +DL  NQ S
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFS 488

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANI--CSNLPFLEYISLSQNMFHGGIPSALSK 142
           GA P  + + S L  L LS N LSGEIP  +  C  L  L+   LS N   G IP++ S+
Sbjct: 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD---LSHNQLSGQIPASFSE 545

Query: 143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIP 185
              L  L LS N  SG IPK +GNV  L ++ +  N L G +P
Sbjct: 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  101 bits (252), Expect = 7e-25
 Identities = 65/181 (35%), Positives = 96/181 (53%), Gaps = 1/181 (0%)

Query: 24  RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQL 83
            +    ++   L G IP +LG + SL+ + L +N LSG IP       +L ++DL  N L
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 84  SGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKC 143
           +G  PS + N  +LQ L L  N LSG IP +I  +L  L  + LS N   G IP  + + 
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 144 TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE 203
             L+IL L  N+F+G IP  + ++ +L+ L L  N+  GEIP+ L     L ++ L  N 
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367

Query: 204 L 204
           L
Sbjct: 368 L 368

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  100 bits (250), Expect = 1e-24
 Identities = 69/180 (38%), Positives = 103/180 (57%), Gaps = 2/180 (1%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
           +TV ++S  NLTG IP  L +  +L  L L  N L G IP +     +L+ V L+ N  S
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
           G  PS       +  LD+S N L G I +    ++P L+ +SL++N F GG+P       
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPD-SFGSK 475

Query: 145 YLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            L+ L LS N FSGA+P+++G++++L +L L  N+L GEIP ELS+  +L  + L  N+L
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.9 bits (236), Expect = 1e-22
 Identities = 61/171 (35%), Positives = 85/171 (49%), Gaps = 2/171 (1%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
           +L G IP  LG   SL+ + L  N  SG +PS       + ++D+  N L G   S  ++
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 94  KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF 153
             SLQ L L+ N   G +P +  S    LE + LS+N F G +P  L   + L  L LS 
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKR--LENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
           N  SG IP E+ +  KL  L L  N+L G+IP   S +  L  + L  N+L
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.8 bits (233), Expect = 3e-22
 Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 2/171 (1%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
           + +G +PS+   L  +  L++S N L G I S  +   +L+ + L  N+  G  P   F 
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FG 473

Query: 94  KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF 153
              L++LDLS N  SG +P  +  +L  L  + LS+N   G IP  LS C  L  L LS 
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKL-GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
           N  SG IP     +  L +L L +N+L GEIP+ L N+  L  +++  N L
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 83.4 bits (206), Expect = 9e-19
 Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 22  SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGN 81
           S R+   ++S    +G +P +LG+LS L  L LS N+LSG IP        L  +DL  N
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 82  QLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS 138
           QLSG  P+       L  LDLS N LSGEIP N+  N+  L  +++S N  HG +PS
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL-GNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.5 bits (178), Expect = 4e-15
 Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 100 LDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA 159
           L L    L G IP +I S L  L+ I+LS N   G IP +L   T L++L LS+N F+G+
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 160 IPKEIGNVTKLKELYLVRNRLQGEIPREL 188
           IP+ +G +T L+ L L  N L G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 13  WTGVTCDVHSHRVTVFNVSGLNLT-----GTIPSQLGNLSSLQSLNLSFNRLSGSIPSAT 67
           W+G  C   S +   F + GL L      G IP+ +  L  LQS+NLS N + G+IP + 
Sbjct: 404 WSGADCQFDSTKGKWF-IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL 462

Query: 68  FITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPA 113
               +L+ +DL  N  +G+ P  +   +SL+ L+L+ N+LSG +PA
Sbjct: 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 76  VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG 135
           + L    L G  P+ I     LQ ++LS N++ G IP ++  ++  LE + LS N F+G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGS 481

Query: 136 IPSALSKCTYLQILGLSFNDFSGAIPKEIG 165
           IP +L + T L+IL L+ N  SG +P  +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 30/84 (35%), Positives = 44/84 (52%)

Query: 121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180
           F++ + L      G IP+ +SK  +LQ + LS N   G IP  +G++T L+ L L  N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 181 QGEIPRELSNLAELELMSLFDNEL 204
            G IP  L  L  L +++L  N L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 6/162 (3%)

Query: 43  LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102
           L  L++L SL+L  N ++   P    +   LK +DL  N++  + PS + N  +L++LDL
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPK 162
           S+N LS ++P  + SNL  L  + LS N     +P  +   + L+ L LS N     +  
Sbjct: 171 SFNDLS-DLPKLL-SNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS 226

Query: 163 EIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            + N+  L  L L  N+L+ ++P  + NL+ LE + L +N++
Sbjct: 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI 267

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSA 66
           + V ++S  +  G+IP  LG L+SL+ LNL+ N LSG +P+A
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 73  LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
           LK +DL  N+L+           +L+ LDLS N L+  I     S LP L  + LS N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 96  SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFND 155
           +L+ LDLS N L+  IP      LP L+ + LS N      P A S    L+ L LS N+
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 156 F 156
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 27/136 (19%)

Query: 72  TLKYVDLRGNQLSG----AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISL 127
            L  VDL GN +         + I N  +L+ ++ S +A +G     + SNL  L     
Sbjct: 31  ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFS-DAFTGRDKDELYSNLVMLL---- 85

Query: 128 SQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNV----TKLKELYLVRNRL--- 180
                      AL KC  LQ + LS N F    P+E+G++    T L  L L  N L   
Sbjct: 86  ----------KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135

Query: 181 -QGEIPRELSNLAELE 195
             G I + L +LA  +
Sbjct: 136 AGGRIGKALFHLAYNK 151

Length = 388

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97
           ++PS L NL +L++L+LSFN LS  +P        L  +DL GN++S   P  I   S+L
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL 211

Query: 98  QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157
           ++LDLS N++   + +   SNL  L  + LS N     +P ++   + L+ L LS N   
Sbjct: 212 EELDLSNNSIIELLSS--LSNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLSNN--Q 266

Query: 158 GAIPKEIGNVTKLKELYLVRNRLQGEIP--RELSNLAELELMSLFDNEL 204
            +    +G++T L+EL L  N L   +P    L  L EL L  L   + 
Sbjct: 267 ISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKA 315

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)

Query: 3  NWNTSSPV-CNWTGVTCD 19
          +WN SS   C+WTGVTCD
Sbjct: 25 SWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.63
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.56
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.54
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.47
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.45
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.45
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.4
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.38
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.36
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.35
PLN03150	623	hypothetical protein; Provisional	99.32
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.28
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.11
PLN03150	623	hypothetical protein; Provisional	99.07
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.92
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.92
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.9
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.88
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.87
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.6
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.49
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.46
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.23
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.13
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.05
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.98
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.94
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.79
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.44
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.39
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.33
PRK15386	426	type III secretion protein GogB; Provisional	97.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.07
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.82
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.72
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.21
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.68
KOG4341	483	consensus F-box protein containing LRR [General fu	95.24
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.89
KOG4308	478	consensus LRR-containing protein [Function unknown	93.86
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.64
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.33
KOG4341	483	consensus F-box protein containing LRR [General fu	93.09
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.01
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.44
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	92.26
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.53
smart00370	26	LRR Leucine-rich repeats, outliers.	91.53
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.29
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.47

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=3.8e-24  Score=182.54  Aligned_cols=200  Identities=43%  Similarity=0.722  Sum_probs=127.3

Q ss_pred             CCCCCCCCCccceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccc-cCCCCccEEEecCc
Q 037027            3 NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAT-FITHTLKYVDLRGN   81 (205)
Q Consensus         3 ~~~~~~~~c~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~   81 (205)
                      .|....++|.|.|+.|.. ..+++.|+++++.+.+..+..|..+++|+.|++++|.+....+..+ ..+.+|++|++++|
T Consensus        50 ~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n  128 (968)
T PLN00113         50 NWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN  128 (968)
T ss_pred             CCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC
Confidence            488888999999999985 3489999999999888888888889999999999888764455433 36666666666666


Q ss_pred             cccc----------------------CCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCC
Q 037027           82 QLSG----------------------AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSA  139 (205)
Q Consensus        82 ~~~~----------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  139 (205)
                      .++.                      ..|..+..+.+|++|++++|.+.+.++..+ ..+++|++|++++|.+.+..|..
T Consensus       129 ~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~  207 (968)
T PLN00113        129 NFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRE  207 (968)
T ss_pred             ccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChH
Confidence            5543                      333334444555555555555443333333 44555555555555555444555


Q ss_pred             cCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          140 LSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       140 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus       208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence            55555555555555555555555555556666666666665555556666666666666666543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=9.2e-22  Score=168.03  Aligned_cols=181  Identities=39%  Similarity=0.542  Sum_probs=109.3

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      .++++.|++++|.+.+..|..++.+++|+.|++++|.+....+..+..+++|++|++.+|.+....|..+..+.+|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            44566666666666656666666677777777777766555666666666777777766666555566666666666666


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +.+|.+.+.++..+ ..+++|+.|++++|.+.+..|..+..+++|+.|++.+|.+.+..|..+..+++|++|++++|.+.
T Consensus       219 L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        219 LGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             CcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            66666654444444 55566666666666655555555555666666666666555455555555555555555555555


Q ss_pred             ccCchhccCCCCCcEEeccCCc
Q 037027          182 GEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       182 ~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                      +.+|..+..+++|+.|++++|.
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCc
Confidence            4455555555555555555544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.79  E-value=3.8e-20  Score=143.18  Aligned_cols=161  Identities=20%  Similarity=0.160  Sum_probs=75.6

Q ss_pred             CCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCc
Q 037027           43 LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL  122 (205)
Q Consensus        43 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  122 (205)
                      |..-.++++|++.+|+|+....+.|..+.+|-.|.+++|.++......|+++++|+.|++.+|.+. .+....|++++++
T Consensus       169 fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl  247 (873)
T KOG4194|consen  169 FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSL  247 (873)
T ss_pred             CCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhh
Confidence            333344555555555555445555555555555555555555333344444555555555555543 3333334444444


Q ss_pred             ceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027          123 EYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       123 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      +.+.+.+|.+.......|..+.++++|+|..|++...-..++.++++|+.|+++.|.|...-++....+++|+.|+++.|
T Consensus       248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence            44444444444333333444444444444444444333444444444444444444444444444444444444444444


Q ss_pred             cC
Q 037027          203 EL  204 (205)
Q Consensus       203 ~l  204 (205)
                      .|
T Consensus       328 ~i  329 (873)
T KOG4194|consen  328 RI  329 (873)
T ss_pred             cc
Confidence            43

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.79  E-value=2.8e-20  Score=143.89  Aligned_cols=187  Identities=24%  Similarity=0.197  Sum_probs=109.4

Q ss_pred             eeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCC
Q 037027           15 GVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK   94 (205)
Q Consensus        15 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l   94 (205)
                      ...|.....+++.|++.+|.|+......|+.+.+|..|.++.|.++-.-...|..+++|+.|++..|.+.......|..+
T Consensus       165 ~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL  244 (873)
T KOG4194|consen  165 PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL  244 (873)
T ss_pred             cCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence            33455555578888888888876666777777788888888888775555566667777777777777664435555666


Q ss_pred             CCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEE
Q 037027           95 SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELY  174 (205)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~  174 (205)
                      ++|+.|.+.+|.+. .+....|.++..+++|++..|++...-...+..++.|++|+++.|.+...-++.+..+++|++|+
T Consensus       245 ~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld  323 (873)
T KOG4194|consen  245 PSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD  323 (873)
T ss_pred             hhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence            66666666666665 44444445555555555555555433334444555555555555555444444444455555555


Q ss_pred             eecccccccCchhccCCCCCcEEeccCC
Q 037027          175 LVRNRLQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       175 l~~~~l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      |+.|++++..++.|..+..|+.|.+++|
T Consensus       324 Ls~N~i~~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  324 LSSNRITRLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             ccccccccCChhHHHHHHHhhhhccccc
Confidence            5555554433344443333333333333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=6.6e-20  Score=121.84  Aligned_cols=166  Identities=34%  Similarity=0.518  Sum_probs=130.7

Q ss_pred             cCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCcc
Q 037027           19 DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ   98 (205)
Q Consensus        19 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   98 (205)
                      ...+.+++.|.++++.++ .+|+.++.+.+|+.|++.+|.++ ..|..+..+++|+.|+++.+.+. ..|..|..++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            345567778888888887 56667888888888888888888 57777888888888888888877 7888888888888


Q ss_pred             EEEcccccCCc-ccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeec
Q 037027           99 DLDLSYNALSG-EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVR  177 (205)
Q Consensus        99 ~L~l~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  177 (205)
                      .|+++.|++.. .++..+ -.+..|+.+++++|.+. .+|..+..+++|++|.+..|.+. .+|+.++.++.|++|++.+
T Consensus       106 vldltynnl~e~~lpgnf-f~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNF-FYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhccccccccccCCcch-hHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            88888887752 344544 34677888888888876 66777888888888888888876 6788888888888899898


Q ss_pred             ccccccCchhccCC
Q 037027          178 NRLQGEIPRELSNL  191 (205)
Q Consensus       178 ~~l~~~~~~~l~~~  191 (205)
                      |.++ .+|..++.+
T Consensus       183 nrl~-vlppel~~l  195 (264)
T KOG0617|consen  183 NRLT-VLPPELANL  195 (264)
T ss_pred             ceee-ecChhhhhh
Confidence            8888 666665543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=1.3e-19  Score=120.47  Aligned_cols=157  Identities=30%  Similarity=0.487  Sum_probs=142.2

Q ss_pred             CCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCc
Q 037027           43 LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL  122 (205)
Q Consensus        43 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  122 (205)
                      +-.+.++++|.+++|+++ ..+..+..+.+|+.|++.+++++ .+|..++.+++|+.|++..|.+. .++..+ +.++-|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchh
Confidence            346788999999999999 78888999999999999999998 88999999999999999999987 677766 889999


Q ss_pred             ceeeeccccccc-CCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027          123 EYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD  201 (205)
Q Consensus       123 ~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~  201 (205)
                      +.+++.+|++.. ..|..|..++.|+.|.+++|.+. .+|..++.+++|+.|.+.+|.+- ..|+.++.+..|++|++.+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            999999999875 57788888899999999999987 78888999999999999999988 7899999999999999999


Q ss_pred             CcCC
Q 037027          202 NELQ  205 (205)
Q Consensus       202 n~l~  205 (205)
                      |.++
T Consensus       183 nrl~  186 (264)
T KOG0617|consen  183 NRLT  186 (264)
T ss_pred             ceee
Confidence            9763

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.63  E-value=2.2e-17  Score=122.44  Aligned_cols=184  Identities=23%  Similarity=0.220  Sum_probs=134.1

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecC-cccccCCCcccc-------
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRG-NQLSGAFPSFIF-------   92 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~-------   92 (205)
                      -++..+.+.|.-|.|+.+.+..|..+++|++|++++|.|....+.+|.+++.+-.|.+.+ |.|+..-...|.       
T Consensus        65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            345677889998999877788899999999999999999988888888888777666666 666522212221       


Q ss_pred             -----------------CCCCccEEEcccccCCc----------------------------------------------
Q 037027           93 -----------------NKSSLQDLDLSYNALSG----------------------------------------------  109 (205)
Q Consensus        93 -----------------~l~~L~~L~l~~~~~~~----------------------------------------------  109 (205)
                                       .++++..|.+.+|.+..                                              
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence                             12233333333332210                                              


Q ss_pred             ---------------------------------------ccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEE
Q 037027          110 ---------------------------------------EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILG  150 (205)
Q Consensus       110 ---------------------------------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~  150 (205)
                                                             ..+...|.++++|++|++++|+++...+.+|.....++.|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence                                                   12223356778888888888888876677788888888888


Q ss_pred             eecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       151 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +..|++..+....|..+..|++|++.+|+|+-..|.+|..+..|.+|.+-.|++
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            888888766677788888888999999998877788888888888888888875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.56  E-value=1.6e-16  Score=124.73  Aligned_cols=35  Identities=31%  Similarity=0.494  Sum_probs=15.8

Q ss_pred             CceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          169 KLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       169 ~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      ++++|+++.|+++ .+|.++..++.|+.|++.+|++
T Consensus       269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL  303 (1255)
T ss_pred             hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence            3333344444443 4444444555555555554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=2.6e-16  Score=123.56  Aligned_cols=162  Identities=27%  Similarity=0.366  Sum_probs=76.7

Q ss_pred             CCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCC
Q 037027           40 PSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL  119 (205)
Q Consensus        40 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  119 (205)
                      |..+-++..|+.|++++|.+. -.|..+...+++-+|++++|++..+....+.++..|-+|++++|.+. .+|... +.+
T Consensus        96 P~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~-RRL  172 (1255)
T KOG0444|consen   96 PTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQI-RRL  172 (1255)
T ss_pred             Cchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHH-HHH
Confidence            333444444555555555444 23333444444445555555544221122223444444455555444 444433 334


Q ss_pred             CCcceeeecccccccCCCCCcCCCCcceEEEeeccee-ecccCccccccCCceEEEeecccccccCchhccCCCCCcEEe
Q 037027          120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF-SGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMS  198 (205)
Q Consensus       120 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~  198 (205)
                      .+|++|.+++|.+.-.-..-+..+++|+.|++++.+- ...+|..+-.+.+|..++++.|.+. .+|+++..+.+|+.|+
T Consensus       173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLN  251 (1255)
T ss_pred             hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheec
Confidence            4444444444433211111122233344444444322 1244555555666666666666666 5667777777777777


Q ss_pred             ccCCcCC
Q 037027          199 LFDNELQ  205 (205)
Q Consensus       199 l~~n~l~  205 (205)
                      +++|+|+
T Consensus       252 LS~N~it  258 (1255)
T KOG0444|consen  252 LSGNKIT  258 (1255)
T ss_pred             cCcCcee
Confidence            7776653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.54  E-value=3.8e-16  Score=118.05  Aligned_cols=184  Identities=21%  Similarity=0.218  Sum_probs=125.1

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCC---CCcEEEeecCccee----ecCccccCC-CCccEEEecCccccc----CCCc
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLS---SLQSLNLSFNRLSG----SIPSATFIT-HTLKYVDLRGNQLSG----AFPS   89 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~   89 (205)
                      .++++.|+++++.+....+..+..+.   +|+.|++.+|.+.+    .....+..+ ++|+.|++.+|.++.    ....
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            55888889988887644444444333   48999998887762    122334455 788999999988763    2233


Q ss_pred             cccCCCCccEEEcccccCCcccCccc---ccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeecccCc
Q 037027           90 FIFNKSSLQDLDLSYNALSGEIPANI---CSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAIPK  162 (205)
Q Consensus        90 ~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~  162 (205)
                      .+..+.+|++|++.+|.+.+.....+   +...++|+.+++++|.+.+.    +...+..+++|+.|++++|.+.+....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            44556789999999988764222222   13446899999999887632    234466778899999999987642222


Q ss_pred             ccc-----ccCCceEEEeecccccc----cCchhccCCCCCcEEeccCCcCC
Q 037027          163 EIG-----NVTKLKELYLVRNRLQG----EIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       163 ~~~-----~~~~L~~l~l~~~~l~~----~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      .+.     ..+.|+++++.+|.+++    .+.+.+..+++|+++++++|+++
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            221     23789999999998873    34466667788999999999874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.47  E-value=1.5e-16  Score=118.55  Aligned_cols=172  Identities=25%  Similarity=0.346  Sum_probs=134.1

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS  103 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  103 (205)
                      .+..++-.+++++ ..|+.+..+.++..+++.+|++....+..+ .++.|++++...|-++ ..|..++.+.+|+-|++.
T Consensus       138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~  214 (565)
T KOG0472|consen  138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLR  214 (565)
T ss_pred             hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhh
Confidence            4455566666665 566666677777777777777774343333 3777888888888776 778888888889999999


Q ss_pred             cccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccccc
Q 037027          104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGE  183 (205)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~  183 (205)
                      +|.+. ++| ++ .++..|..++++.|.+.-...+...++.++..||+.+|++. ..|+.+.-+.+|+.++++.|.++ .
T Consensus       215 ~Nki~-~lP-ef-~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~  289 (565)
T KOG0472|consen  215 RNKIR-FLP-EF-PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-S  289 (565)
T ss_pred             hcccc-cCC-CC-CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-c
Confidence            99987 777 44 77888999999999886333345568889999999999887 67778878889999999999998 7


Q ss_pred             CchhccCCCCCcEEeccCCcC
Q 037027          184 IPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       184 ~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      .|..++++ +|+.|.+.|||+
T Consensus       290 Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  290 LPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             CCcccccc-eeeehhhcCCch
Confidence            78899999 999999999987

>PLN03210 Resistant to P

Probab=99.45  E-value=1.5e-12  Score=113.17  Aligned_cols=82  Identities=21%  Similarity=0.272  Sum_probs=49.5

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      ..+++.|++.++.+. ..++.+..+++|+.++++++......+ .+..+++|+.|++.+|......|..+..+.+|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            345666666666654 455556666777777776654332232 355666777777776654445566666666666666


Q ss_pred             cccc
Q 037027          102 LSYN  105 (205)
Q Consensus       102 l~~~  105 (205)
                      +.+|
T Consensus       688 L~~c  691 (1153)
T PLN03210        688 MSRC  691 (1153)
T ss_pred             CCCC
Confidence            6665

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.45  E-value=1.3e-12  Score=113.45  Aligned_cols=80  Identities=21%  Similarity=0.284  Sum_probs=41.6

Q ss_pred             CcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCcccccc---------------------CCceEEEeeccc
Q 037027          121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNV---------------------TKLKELYLVRNR  179 (205)
Q Consensus       121 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~---------------------~~L~~l~l~~~~  179 (205)
                      +|+.|++++|.....+|..+..+++|+.|++.+|...+.+|... .+                     +++++|++++|.
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~  857 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG  857 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC
Confidence            45555555554444455555666666666666553222222221 22                     234445555555


Q ss_pred             ccccCchhccCCCCCcEEeccCC
Q 037027          180 LQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       180 l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      ++ .+|..+..+++|+.|++.+|
T Consensus       858 i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        858 IE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             Cc-cChHHHhcCCCCCEEECCCC
Confidence            54 45556666667777766664

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.42  E-value=5.4e-16  Score=115.64  Aligned_cols=171  Identities=32%  Similarity=0.487  Sum_probs=121.3

Q ss_pred             EEEecCCcccccCCCCCCCCCCCcEEEeecCccee----------------------ecCccccCCCCccEEEecCcccc
Q 037027           27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSG----------------------SIPSATFITHTLKYVDLRGNQLS   84 (205)
Q Consensus        27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----------------------~~~~~~~~l~~L~~L~l~~~~~~   84 (205)
                      .++.+++.+. ..|+.++....+..++++.|.+..                      ..|.++..+.++..+++.++.+.
T Consensus        95 ~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~  173 (565)
T KOG0472|consen   95 SLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK  173 (565)
T ss_pred             HhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh
Confidence            4455555544 455555555555555555554441                      34444444445555555555555


Q ss_pred             cCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccc
Q 037027           85 GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI  164 (205)
Q Consensus        85 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  164 (205)
                       ..|+..-.+..|++++...|-+. .+|.+. +++..|..+++..|.+. +.| .|..|..|..++++.|++. .+|...
T Consensus       174 -~l~~~~i~m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~  247 (565)
T KOG0472|consen  174 -ALPENHIAMKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEH  247 (565)
T ss_pred             -hCCHHHHHHHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHH
Confidence             22332223667788888888776 788888 88889999999999986 455 7888899999999999887 555544


Q ss_pred             -cccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          165 -GNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       165 -~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                       .+++++-.+++++|+++ ++|+.+..+.+|..||+++|.|+
T Consensus       248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc
Confidence             48899999999999999 78999999999999999999875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.40  E-value=1.4e-14  Score=109.48  Aligned_cols=181  Identities=20%  Similarity=0.163  Sum_probs=97.1

Q ss_pred             eEEEEEecCCcccc------cCCCCCCCCCCCcEEEeecCcceeecCccccCCC---CccEEEecCccccc----CCCcc
Q 037027           24 RVTVFNVSGLNLTG------TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITH---TLKYVDLRGNQLSG----AFPSF   90 (205)
Q Consensus        24 ~l~~l~l~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~----~~~~~   90 (205)
                      .++.++++++.+.+      ..+..++.+++|+.|+++++.+....+..+..+.   +|++|++.+|.+..    .....
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~  131 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG  131 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence            46666666655431      1223345566677777776666533333333333   37777777766542    11222


Q ss_pred             ccCC-CCccEEEcccccCCcccCc---ccccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeeccc--
Q 037027           91 IFNK-SSLQDLDLSYNALSGEIPA---NICSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAI--  160 (205)
Q Consensus        91 l~~l-~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~--  160 (205)
                      +..+ ++|+.+++.+|.+++....   ..+..++.|+++++++|.+++.    ++..+...++|+.|++++|.+.+..  
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence            3344 6677777777766521111   1123445677777777766531    2223344457777777777654322  


Q ss_pred             --CccccccCCceEEEeecccccccCchhcc-----CCCCCcEEeccCCcC
Q 037027          161 --PKEIGNVTKLKELYLVRNRLQGEIPRELS-----NLAELELMSLFDNEL  204 (205)
Q Consensus       161 --~~~~~~~~~L~~l~l~~~~l~~~~~~~l~-----~~~~L~~l~l~~n~l  204 (205)
                        ...+..+++|++|++++|.+++.....+.     ..+.|++|++++|.+
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence              23344566777777777777643222222     235677777777765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.38  E-value=1.6e-14  Score=117.35  Aligned_cols=129  Identities=28%  Similarity=0.341  Sum_probs=103.6

Q ss_pred             CCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEE
Q 037027           71 HTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILG  150 (205)
Q Consensus        71 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~  150 (205)
                      +.|+.|.+.+|.+++.....+-++.+|+.|++++|.+. .++...+.++..|+.|++++|+++ .+|..+..+..|++|.
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR  436 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence            34777888888887766666777889999999999987 777777788899999999999988 5678888888999999


Q ss_pred             eecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027          151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       151 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                      ..+|++. ..| .+..++.|+.+|++.|.++......-...++|++||+.||.
T Consensus       437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            8888886 455 77788999999999999885433333344889999999985

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.36  E-value=2.3e-14  Score=116.45  Aligned_cols=179  Identities=26%  Similarity=0.400  Sum_probs=110.0

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      .+.+++.++++++.++ ..|+.+..+.+|+.+...+|.+. ..+..+....+|+.|....|.+. ..|..+..+.+|++|
T Consensus       239 ~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL  315 (1081)
T ss_pred             ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence            3445666666666655 34466666666666666666664 44444445555555555555555 455555566777777


Q ss_pred             EcccccCCcccCcccccC-------------------------CCCcceeeecccccccCCCCCcCCCCcceEEEeecce
Q 037027          101 DLSYNALSGEIPANICSN-------------------------LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFND  155 (205)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~-------------------------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  155 (205)
                      ++..|.+. .++..++..                         .+.|+.|.+.+|.+++...+.+...+.|+.|++++|.
T Consensus       316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             eehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            77777665 444322221                         2335566666666666555556666677777777777


Q ss_pred             eecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          156 FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       156 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +.......+..+..|++|+++||+++ .+|..++.++.|++|...+|.+
T Consensus       395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l  442 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL  442 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce
Confidence            66444455566677777777777777 6667777777777777766654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.35  E-value=3.7e-12  Score=105.16  Aligned_cols=162  Identities=25%  Similarity=0.426  Sum_probs=85.0

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS  103 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  103 (205)
                      .++.|++++|.++ .+|..+  ..+|+.|++++|.+. .++..+  ..+|+.|++++|.+. .+|..+.  ..|+.|+++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELK-SLPENL--QGNIKTLYANSNQLT-SIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCC-cCChhh--ccCCCEEECCCCccc-cCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            4566666666655 333332  235666666666555 223222  124555566555554 3333322  245566666


Q ss_pred             cccCCcccCcccccCCCCcceeeecccccccCCCCCcC-------------------CCCcceEEEeecceeecccCccc
Q 037027          104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALS-------------------KCTYLQILGLSFNDFSGAIPKEI  164 (205)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-------------------~~~~L~~l~l~~~~~~~~~~~~~  164 (205)
                      +|++. .++..+   .++|+.|++++|+++. +|..+.                   ..++|+.|++.+|.+.. +|..+
T Consensus       271 ~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l  344 (754)
T PRK15370        271 HNKIS-CLPENL---PEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASL  344 (754)
T ss_pred             CCccC-cccccc---CCCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhh
Confidence            65554 444333   1345555555555542 121110                   11456666666666553 34333


Q ss_pred             cccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          165 GNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       165 ~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                        .++|+.|++++|+++ .+|..+.  +.|+.|++++|.|+
T Consensus       345 --~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        345 --PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             --cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence              357778888888777 4554442  57888888888763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.35  E-value=4.2e-12  Score=104.84  Aligned_cols=161  Identities=27%  Similarity=0.463  Sum_probs=95.8

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS  103 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  103 (205)
                      +++.|++++|.+. .+|..+  ..+|+.|++++|.+. .++..+.  .+|+.|++++|.+. .+|..+.  .+|++|+++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccc-cCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence            5666666666655 333322  124555555555554 2222221  24555555555444 2333221  244444444


Q ss_pred             cccCCc--------------------ccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCcc
Q 037027          104 YNALSG--------------------EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKE  163 (205)
Q Consensus       104 ~~~~~~--------------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  163 (205)
                      +|.+..                    .++...   .++|+.|++++|.++. +|..+  .++|+.|++++|.+. .+|..
T Consensus       292 ~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~  364 (754)
T PRK15370        292 DNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPET  364 (754)
T ss_pred             CCccccCcccchhhHHHHHhcCCccccCCccc---cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChh
Confidence            444431                    333222   3568888888888774 45544  368999999999987 45554


Q ss_pred             ccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          164 IGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       164 ~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      +  .++|++|++++|.++ .+|..+.  ..|+.|++++|.++
T Consensus       365 l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~  401 (754)
T PRK15370        365 L--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV  401 (754)
T ss_pred             h--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence            4  468999999999998 5565543  36889999999864

>PLN03150 hypothetical protein; Provisional

Probab=99.32  E-value=9e-12  Score=101.83  Aligned_cols=129  Identities=31%  Similarity=0.516  Sum_probs=108.7

Q ss_pred             CCCCCCCCC-----ccceeeecCCC----ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCc
Q 037027            3 NWNTSSPVC-----NWTGVTCDVHS----HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTL   73 (205)
Q Consensus         3 ~~~~~~~~c-----~~~~~~~~~~~----~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   73 (205)
                      .|..  ++|     .|.|+.|....    ..++.|+|+++.+.+.+|..++.+++|+.|++++|.+....+..+..+++|
T Consensus       391 ~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L  468 (623)
T PLN03150        391 GWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL  468 (623)
T ss_pred             CCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence            5864  344     69999996432    258899999999999999999999999999999999987888889999999


Q ss_pred             cEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccc
Q 037027           74 KYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH  133 (205)
Q Consensus        74 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  133 (205)
                      +.|++.+|.+....|..+..+.+|++|++++|.+.+.++..+.....++..+++.+|...
T Consensus       469 ~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence            999999999998889999999999999999999988888776433445677888877543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.28  E-value=2.6e-13  Score=101.15  Aligned_cols=74  Identities=27%  Similarity=0.298  Sum_probs=60.4

Q ss_pred             CCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccc-ccCCcccCcccccCCCCc
Q 037027           48 SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSY-NALSGEIPANICSNLPFL  122 (205)
Q Consensus        48 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L  122 (205)
                      ....+.+..|.|....+++|..+++|+.|++++|.|+.+.|.+|..+..+..|.+.+ |.|+ .+++..|.++..+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence            578899999999988888999999999999999999999999999998887666665 8887 5555554444333

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.28  E-value=2.1e-11  Score=100.54  Aligned_cols=116  Identities=28%  Similarity=0.334  Sum_probs=73.1

Q ss_pred             CccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEe
Q 037027           72 TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGL  151 (205)
Q Consensus        72 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l  151 (205)
                      +|++|++++|.+. .+|..   ...|+.|++.+|.+. .++.    ....|+.|++++|.++. +|..   ..+|+.|++
T Consensus       343 ~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~----l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdL  409 (788)
T PRK15387        343 GLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-LPVL---PSELKELMV  409 (788)
T ss_pred             ccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCcc----cccccceEEecCCcccC-CCCc---ccCCCEEEc
Confidence            3445555555444 22221   123444455555544 3332    12457777777777763 3432   246778888


Q ss_pred             ecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          152 SFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      ++|.+.. +|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus       410 S~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        410 SGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             cCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence            8887763 4432   356788899999988 67888999999999999999875

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.21  E-value=1.7e-13  Score=106.37  Aligned_cols=168  Identities=29%  Similarity=0.435  Sum_probs=101.3

Q ss_pred             EEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccC
Q 037027           28 FNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNAL  107 (205)
Q Consensus        28 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  107 (205)
                      .+++.|.+. .+|+.+..|..|+.+.+++|.+. .++.++..+..|.+++++.|.++ .+|..++. .-|+.|.+++|++
T Consensus        80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-lpLkvli~sNNkl  155 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-LPLKVLIVSNNKL  155 (722)
T ss_pred             hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-CcceeEEEecCcc
Confidence            344444433 34444444444555555555554 45555566666666666666665 55555432 2355566666666


Q ss_pred             CcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchh
Q 037027          108 SGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE  187 (205)
Q Consensus       108 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~  187 (205)
                      . .++..+ .....|..++.+.|.+. .+|.-++.+.+|+.+.+..|.+. .+|..+. .-.|..||+++|++. .+|-.
T Consensus       156 ~-~lp~~i-g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  156 T-SLPEEI-GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             c-cCCccc-ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchh
Confidence            5 566555 35556666666666665 34444555566666666666555 3454554 446678888888888 77888


Q ss_pred             ccCCCCCcEEeccCCcCC
Q 037027          188 LSNLAELELMSLFDNELQ  205 (205)
Q Consensus       188 l~~~~~L~~l~l~~n~l~  205 (205)
                      |.++.+|+.|-+.+|+|+
T Consensus       230 fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhheeeeeccCCCC
Confidence            888888888888888874

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=2e-11  Score=95.04  Aligned_cols=173  Identities=36%  Similarity=0.494  Sum_probs=134.8

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCC-CCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLS-SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      ..+..+++.++.+. .++.....+. +|+.|++++|.+. ..+..+..++.|+.|++..|.+. ..+........|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            35788899888887 4555555664 8999999999988 44466788999999999999988 4555444678899999


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +++|.+. .++... .....|.++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..+..++.++++++++|.+.
T Consensus       193 ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         193 LSGNKIS-DLPPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             ccCCccc-cCchhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence            9999997 677653 34556999999999543 45666778888888888888776 33566778888999999999998


Q ss_pred             ccCchhccCCCCCcEEeccCCcC
Q 037027          182 GEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       182 ~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +. +. ++...+++.+++++|.+
T Consensus       269 ~i-~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         269 SI-SS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cc-cc-ccccCccCEEeccCccc
Confidence            44 33 88999999999999865

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=3.5e-11  Score=82.36  Aligned_cols=124  Identities=30%  Similarity=0.261  Sum_probs=37.7

Q ss_pred             CCCCcEEEeecCcceeecCcccc-CCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcce
Q 037027           46 LSSLQSLNLSFNRLSGSIPSATF-ITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEY  124 (205)
Q Consensus        46 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  124 (205)
                      ..+++.|++.++.+.. +. .+. .+.+|+.|++++|.+...  +.+..+..|++|++.+|.++ .+...+...+++|+.
T Consensus        18 ~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            3456677777777663 22 222 455677777777766532  23555667777777777775 444333234667777


Q ss_pred             eeecccccccC-CCCCcCCCCcceEEEeecceeecccC---ccccccCCceEEE
Q 037027          125 ISLSQNMFHGG-IPSALSKCTYLQILGLSFNDFSGAIP---KEIGNVTKLKELY  174 (205)
Q Consensus       125 l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~  174 (205)
                      |++++|++.+. ....+..+++|+.|++.+|++.....   ..+..+|+|+.||
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            77777766542 12345566667777777666643211   2234456666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=5.2e-11  Score=81.51  Aligned_cols=127  Identities=28%  Similarity=0.296  Sum_probs=52.0

Q ss_pred             cCCCCccEEEecCcccccCCCcccc-CCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCc-CCCCc
Q 037027           68 FITHTLKYVDLRGNQLSGAFPSFIF-NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL-SKCTY  145 (205)
Q Consensus        68 ~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~  145 (205)
                      .+..++++|++.++.++..  +.+. .+.+|+.|++++|.+. .+.. + ..++.|++|++++|.++. +.+.+ ..+++
T Consensus        16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~-l-~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEG-L-PGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccC-c-cChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            4556789999999998743  3444 5789999999999997 5553 3 568999999999999984 33333 45789


Q ss_pred             ceEEEeecceeeccc-CccccccCCceEEEeecccccccC---chhccCCCCCcEEecc
Q 037027          146 LQILGLSFNDFSGAI-PKEIGNVTKLKELYLVRNRLQGEI---PRELSNLAELELMSLF  200 (205)
Q Consensus       146 L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~~~---~~~l~~~~~L~~l~l~  200 (205)
                      |+.|++++|.+.+.. -..+..+++|+.|++.+|++.+..   ..++..+|+|+.||-.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            999999999886422 245667899999999999998532   2566788999988754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=6e-12  Score=95.02  Aligned_cols=180  Identities=21%  Similarity=0.185  Sum_probs=93.7

Q ss_pred             eEEEEEecCCcccccCC--CCCCCCCCCcEEEeecCcceee--cCccccCCCCccEEEecCcccccCCCccc-cCCCCcc
Q 037027           24 RVTVFNVSGLNLTGTIP--SQLGNLSSLQSLNLSFNRLSGS--IPSATFITHTLKYVDLRGNQLSGAFPSFI-FNKSSLQ   98 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~   98 (205)
                      +++.+.+.++.+. ..+  +....+++++.|++++|=+...  ...-...+++|+.|+++.|.+.....+.. ..+.+|+
T Consensus       122 kL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  122 KLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             hhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            4555555554433 112  2344566677777766644311  22223456667777776666542111111 1245666


Q ss_pred             EEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeeccc-CccccccCCceEEEeec
Q 037027           99 DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI-PKEIGNVTKLKELYLVR  177 (205)
Q Consensus        99 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~  177 (205)
                      .|.++.|+++..-.+.+...+|++..|++..|.....-......++.|+.|+|++|++.+.. ......++.|+.++++.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence            67777776653333344345666677777666321121222344556677777776654221 13445566666677666


Q ss_pred             cccccc-Cchh-----ccCCCCCcEEeccCCcC
Q 037027          178 NRLQGE-IPRE-----LSNLAELELMSLFDNEL  204 (205)
Q Consensus       178 ~~l~~~-~~~~-----l~~~~~L~~l~l~~n~l  204 (205)
                      +.+.+. .|++     ...+++|++|++..|++
T Consensus       281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             cCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            666542 1222     33456667777666665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.12  E-value=6.3e-10  Score=92.04  Aligned_cols=135  Identities=29%  Similarity=0.395  Sum_probs=69.9

Q ss_pred             EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCcccc--------------
Q 037027           27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF--------------   92 (205)
Q Consensus        27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--------------   92 (205)
                      .|+++++.++ .+|..+.  .+|+.|++.+|.++. ++.   .+++|++|++.+|.++ .+|....              
T Consensus       205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~  276 (788)
T PRK15387        205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH  276 (788)
T ss_pred             EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchhh
Confidence            4566666665 4454443  256666666666652 221   2355666666666655 2232110              


Q ss_pred             ---CCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCC
Q 037027           93 ---NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTK  169 (205)
Q Consensus        93 ---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  169 (205)
                         -...|+.|++.+|.+. .++.    ..++|+.|++++|.++. +|..   ..+|..|++.+|.+.. +|.   ...+
T Consensus       277 Lp~lp~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~---lp~~  343 (788)
T PRK15387        277 LPALPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT---LPSG  343 (788)
T ss_pred             hhhchhhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc---cccc
Confidence               0123444455555444 3332    13456666776666653 2321   1245556666666542 332   1247


Q ss_pred             ceEEEeecccccc
Q 037027          170 LKELYLVRNRLQG  182 (205)
Q Consensus       170 L~~l~l~~~~l~~  182 (205)
                      |++|++++|++++
T Consensus       344 Lq~LdLS~N~Ls~  356 (788)
T PRK15387        344 LQELSVSDNQLAS  356 (788)
T ss_pred             cceEecCCCccCC
Confidence            8888888888873

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.11  E-value=1e-10  Score=66.35  Aligned_cols=61  Identities=33%  Similarity=0.453  Sum_probs=47.8

Q ss_pred             CcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          144 TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       144 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      ++|+.|++++|.+....+..+..+++|+++++++|.++...++.|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3577788888877766667777888888888888888866677888888888888888875

...

>PLN03150 hypothetical protein; Provisional

Probab=99.07  E-value=2.9e-10  Score=93.09  Aligned_cols=106  Identities=38%  Similarity=0.618  Sum_probs=80.0

Q ss_pred             ccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEee
Q 037027           97 LQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLV  176 (205)
Q Consensus        97 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  176 (205)
                      ++.|++.++.+.+.++..+ ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            5677777777776666665 677888888888888877777777788888888888888877777777788888888888


Q ss_pred             cccccccCchhccCC-CCCcEEeccCCc
Q 037027          177 RNRLQGEIPRELSNL-AELELMSLFDNE  203 (205)
Q Consensus       177 ~~~l~~~~~~~l~~~-~~L~~l~l~~n~  203 (205)
                      +|.+.+.+|..+... .++..+++.+|+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            888877777776643 456667777664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=1.9e-09  Score=61.09  Aligned_cols=59  Identities=32%  Similarity=0.466  Sum_probs=42.0

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ   82 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   82 (205)
                      +++.|++++|.+....+..|+++++|+.|++++|.+....+.+|..+++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            56677777777775556677777777777777777776666677777777777777664

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=8.2e-11  Score=89.03  Aligned_cols=187  Identities=25%  Similarity=0.187  Sum_probs=128.3

Q ss_pred             ecCCCceEEEEEecCCccccc--CCCCCCCCCCCcEEEeecCcceeecCc-cccCCCCccEEEecCcccccC-CCccccC
Q 037027           18 CDVHSHRVTVFNVSGLNLTGT--IPSQLGNLSSLQSLNLSFNRLSGSIPS-ATFITHTLKYVDLRGNQLSGA-FPSFIFN   93 (205)
Q Consensus        18 ~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~~~l~~   93 (205)
                      ..+.+++++.|+++++-+...  +..-..++++|+.|+++.|++...... .-..+..|+.|.++.|.++.. ....+..
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            345677999999999865422  223335689999999999988622221 123567899999999988732 2223446


Q ss_pred             CCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCC-CCCcCCCCcceEEEeecceeecc-cCcc-----ccc
Q 037027           94 KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI-PSALSKCTYLQILGLSFNDFSGA-IPKE-----IGN  166 (205)
Q Consensus        94 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~-----~~~  166 (205)
                      ++.|+.|++..|... .........+..|+.|++++|.+.++. ......++.|+.|.++.+.+... .|+.     .-.
T Consensus       221 fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  221 FPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             CCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence            789999999998422 111111145678999999999887542 24567889999999999987532 2222     345


Q ss_pred             cCCceEEEeecccccccC-chhccCCCCCcEEeccCCcCC
Q 037027          167 VTKLKELYLVRNRLQGEI-PRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       167 ~~~L~~l~l~~~~l~~~~-~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      +++|++|++..|++.+.- ...+..+++|+.+.+..|.++
T Consensus       300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            789999999999997431 245566777888877777653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.92  E-value=4.7e-11  Score=93.16  Aligned_cols=146  Identities=29%  Similarity=0.392  Sum_probs=102.7

Q ss_pred             EEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccC
Q 037027           28 FNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNAL  107 (205)
Q Consensus        28 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  107 (205)
                      +.+.+|.+- .+|+.+.++..|+.++|+.|.+. ..+..++.+ -|+.|-+.+|+++ ..|+.+....+|..|+.+.|.+
T Consensus       103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence            445555443 56777777888888888887776 455544333 3677777777777 6666666667777888888877


Q ss_pred             CcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccc
Q 037027          108 SGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG  182 (205)
Q Consensus       108 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~  182 (205)
                      . .++..+ .++..|+.+++.+|++. ..|+.+..+ .|..||++.|.+. .+|..+..++.|++|-|.+|.+++
T Consensus       179 ~-slpsql-~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  179 Q-SLPSQL-GYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             h-hchHHh-hhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            6 666666 66777788888888776 345555543 4788888888776 677777788888888888888873

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.90  E-value=1.4e-10  Score=85.51  Aligned_cols=182  Identities=20%  Similarity=0.201  Sum_probs=121.3

Q ss_pred             ceEEEEEecCCcccc----cCCCCCCCCCCCcEEEeecCcce----------eecCccccCCCCccEEEecCcccccCCC
Q 037027           23 HRVTVFNVSGLNLTG----TIPSQLGNLSSLQSLNLSFNRLS----------GSIPSATFITHTLKYVDLRGNQLSGAFP   88 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~----------~~~~~~~~~l~~L~~L~l~~~~~~~~~~   88 (205)
                      ..++.++|+|+.+..    .+...++.-+.|+..+++...-.          .....++.++++|++++++.|-+....+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            368889999998752    24445566677888888764221          1223344567789999999987664333


Q ss_pred             cc----ccCCCCccEEEcccccCCcccCccc-------------ccCCCCcceeeecccccccC----CCCCcCCCCcce
Q 037027           89 SF----IFNKSSLQDLDLSYNALSGEIPANI-------------CSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQ  147 (205)
Q Consensus        89 ~~----l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~  147 (205)
                      ..    ++++..|++|++.+|++. ......             ...-+.|+.+..++|++-+.    +...+...+.|+
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            33    345778999999998774 222111             13346788888888877542    234466677888


Q ss_pred             EEEeecceeeccc----CccccccCCceEEEeecccccc----cCchhccCCCCCcEEeccCCcCC
Q 037027          148 ILGLSFNDFSGAI----PKEIGNVTKLKELYLVRNRLQG----EIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       148 ~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~l~~----~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      .++++.|.+....    ...+.++++|+.|++.+|-++.    .+.+.+..+++|+.|++.+|.++
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            8888888774322    2455678888888888887764    24466667888888888887653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=1.3e-10  Score=84.49  Aligned_cols=129  Identities=30%  Similarity=0.285  Sum_probs=102.6

Q ss_pred             CCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceee
Q 037027           47 SSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYIS  126 (205)
Q Consensus        47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~  126 (205)
                      +.|+.+++++|.|. -+.....-.+.++.|+++.|.+...  ..+..+++|++|++++|.++ ++...- .++.+++++.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh-~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWH-LKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhH-hhhcCEeeee
Confidence            46889999999988 4566677889999999999998733  23778899999999999887 665544 6788999999


Q ss_pred             ecccccccCCCCCcCCCCcceEEEeecceeec-ccCccccccCCceEEEeecccccc
Q 037027          127 LSQNMFHGGIPSALSKCTYLQILGLSFNDFSG-AIPKEIGNVTKLKELYLVRNRLQG  182 (205)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~l~~  182 (205)
                      ++.|.+.  ....+..+.+|..||+.+|++.. .....++.+|-|+++.+.+|++..
T Consensus       359 La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            9999884  33567788899999999998752 223566788899999999998874

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.87  E-value=1.3e-09  Score=84.95  Aligned_cols=156  Identities=33%  Similarity=0.528  Sum_probs=119.7

Q ss_pred             CCCCCCCcEEEeecCcceeecCccccCCC-CccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCC
Q 037027           43 LGNLSSLQSLNLSFNRLSGSIPSATFITH-TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF  121 (205)
Q Consensus        43 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  121 (205)
                      +..+..++.+++.++.+. .++....... +|+.|+++.+.+. ..+..+..++.|+.|++..|++. .++... ...+.
T Consensus       112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~-~~~~~  187 (394)
T COG4886         112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLL-SNLSN  187 (394)
T ss_pred             hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhh-hhhhh
Confidence            344567888999998888 4555555563 8999999999887 55556677899999999999987 666543 36788


Q ss_pred             cceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027          122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD  201 (205)
Q Consensus       122 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~  201 (205)
                      +..+++++|.+. .+|........|+.+.+++|... ..+..+..++.+..+.+.+|++. ..+..+..++++++|++.+
T Consensus       188 L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~  264 (394)
T COG4886         188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN  264 (394)
T ss_pred             hhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccc
Confidence            999999999987 44554445566899999998533 44556677888888888888887 4467888899999999999


Q ss_pred             CcCC
Q 037027          202 NELQ  205 (205)
Q Consensus       202 n~l~  205 (205)
                      |.++
T Consensus       265 n~i~  268 (394)
T COG4886         265 NQIS  268 (394)
T ss_pred             cccc
Confidence            9874

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.82  E-value=2.6e-10  Score=84.01  Aligned_cols=182  Identities=20%  Similarity=0.214  Sum_probs=126.1

Q ss_pred             ceEEEEEecCCcccccCCCC----CCCCCCCcEEEeecCcceee-------------cCccccCCCCccEEEecCccccc
Q 037027           23 HRVTVFNVSGLNLTGTIPSQ----LGNLSSLQSLNLSFNRLSGS-------------IPSATFITHTLKYVDLRGNQLSG   85 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~-------------~~~~~~~l~~L~~L~l~~~~~~~   85 (205)
                      ++++.++|+.|-+...-+..    +..+..|++|.+.+|.+...             .......-+.|+++...+|.+.+
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            48888999998776443332    34567789999998877521             11223445678999988887763


Q ss_pred             C----CCccccCCCCccEEEcccccCCcccC---cccccCCCCcceeeeccccccc----CCCCCcCCCCcceEEEeecc
Q 037027           86 A----FPSFIFNKSSLQDLDLSYNALSGEIP---ANICSNLPFLEYISLSQNMFHG----GIPSALSKCTYLQILGLSFN  154 (205)
Q Consensus        86 ~----~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~----~~~~~~~~~~~L~~l~l~~~  154 (205)
                      .    ....++..+.|+.+.+..|.|.....   ..-+..+++|+.|++.+|.++.    .+.+.++.++.|+.+.+++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            2    22335566788999999887752221   1223567889999999998764    35567788889999999999


Q ss_pred             eeecccCccc-----cccCCceEEEeeccccccc----CchhccCCCCCcEEeccCCcC
Q 037027          155 DFSGAIPKEI-----GNVTKLKELYLVRNRLQGE----IPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       155 ~~~~~~~~~~-----~~~~~L~~l~l~~~~l~~~----~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      .+.......+     ...++|+.+.+.+|.++..    +..+++..+.|..|++++|.+
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            8764333222     3468899999999988743    334555678899999999876

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.73  E-value=1.1e-09  Score=79.81  Aligned_cols=128  Identities=23%  Similarity=0.306  Sum_probs=101.3

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS  103 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  103 (205)
                      .++++|+++|.|+ .+.+.+.-.+.++.|++++|.+..  ...+..+++|+.|++++|.++... ..=.++.++++|.++
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHhhh-hhHhhhcCEeeeehh
Confidence            3667999999887 677777788999999999999973  334778999999999999886321 112357789999999


Q ss_pred             cccCCcccCcccccCCCCcceeeeccccccc-CCCCCcCCCCcceEEEeecceeec
Q 037027          104 YNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDFSG  158 (205)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~  158 (205)
                      +|.+. .++. + .++-+|..+++.+|+|.. .....+++++.|+++.+.+|++.+
T Consensus       361 ~N~iE-~LSG-L-~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  361 QNKIE-TLSG-L-RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhHh-hhhh-h-HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            99886 4433 2 567789999999999874 233678899999999999999864

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=4.3e-10  Score=81.62  Aligned_cols=157  Identities=22%  Similarity=0.152  Sum_probs=87.0

Q ss_pred             CCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCC--CccccCCCCccEEEcccccCCcccCc-ccccCCCCc
Q 037027           46 LSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAF--PSFIFNKSSLQDLDLSYNALSGEIPA-NICSNLPFL  122 (205)
Q Consensus        46 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L  122 (205)
                      +++|+.+++.++.+.+-+...+.+-..|+.+++++|+--...  .-.+..+..|..|++++|.+..+... .+...-++|
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l  288 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL  288 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence            444555555555544444444445555666666665421111  11133456666777776654322111 111112456


Q ss_pred             ceeeecccccc--c-CCCCCcCCCCcceEEEeeccee-ecccCccccccCCceEEEeeccccc-ccCchhccCCCCCcEE
Q 037027          123 EYISLSQNMFH--G-GIPSALSKCTYLQILGLSFNDF-SGAIPKEIGNVTKLKELYLVRNRLQ-GEIPRELSNLAELELM  197 (205)
Q Consensus       123 ~~l~l~~~~~~--~-~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~l~~~~~L~~l  197 (205)
                      ..|+++++.-.  . .+.--.+.+++|..||+++|.. .+.....+..++.|+++.++.|-.- -...-.+...|.|.+|
T Consensus       289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL  368 (419)
T KOG2120|consen  289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL  368 (419)
T ss_pred             hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEE
Confidence            77777766321  1 1111135678899999999854 3334456677899999999988532 1222345677889999


Q ss_pred             eccCC
Q 037027          198 SLFDN  202 (205)
Q Consensus       198 ~l~~n  202 (205)
                      ++.++
T Consensus       369 dv~g~  373 (419)
T KOG2120|consen  369 DVFGC  373 (419)
T ss_pred             Eeccc
Confidence            98876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.60  E-value=8.3e-09  Score=74.18  Aligned_cols=184  Identities=21%  Similarity=0.204  Sum_probs=129.7

Q ss_pred             CCceEEEEEecCCccccc----CCCCCCCCCCCcEEEeecCcce----------eecCccccCCCCccEEEecCcccccC
Q 037027           21 HSHRVTVFNVSGLNLTGT----IPSQLGNLSSLQSLNLSFNRLS----------GSIPSATFITHTLKYVDLRGNQLSGA   86 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~----------~~~~~~~~~l~~L~~L~l~~~~~~~~   86 (205)
                      .+..++.++++||.|...    +...+++-++|+..+++.....          .....++.++++|+.++++.|-+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            355788999999988633    4556677788998888875322          22345567899999999999987765


Q ss_pred             CCcc----ccCCCCccEEEcccccCCcccCcccc-------------cCCCCcceeeecccccccCCC----CCcCCCCc
Q 037027           87 FPSF----IFNKSSLQDLDLSYNALSGEIPANIC-------------SNLPFLEYISLSQNMFHGGIP----SALSKCTY  145 (205)
Q Consensus        87 ~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~-------------~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~  145 (205)
                      .++.    +++...|.||.+.+|++- .+.....             ..-|.|+++.+++|++.....    ..+..-..
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            5554    345678999999999874 4333211             234779999999998863211    12333357


Q ss_pred             ceEEEeecceeecccC-----ccccccCCceEEEeecccccc----cCchhccCCCCCcEEeccCCcCC
Q 037027          146 LQILGLSFNDFSGAIP-----KEIGNVTKLKELYLVRNRLQG----EIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       146 L~~l~l~~~~~~~~~~-----~~~~~~~~L~~l~l~~~~l~~----~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      |..+.+..|.+.....     ..+.++.+|+.|++++|.++-    ....++..++.|+.|.+.+|-++
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            8899999998764322     223567899999999998874    34566678888999999888653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.49  E-value=4.2e-08  Score=82.88  Aligned_cols=105  Identities=24%  Similarity=0.237  Sum_probs=54.0

Q ss_pred             eEEEEEecCCc--ccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           24 RVTVFNVSGLN--LTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        24 ~l~~l~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      ++++|-+.++.  +.....++|..++.|+.||+++|.-....|..+..+-+||+|++.++.+. .+|..+..+..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            45555555543  33333444555566666666655433345555555666666666666555 5555555555666666


Q ss_pred             cccccCCcccCcccccCCCCcceeeeccc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQN  130 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~  130 (205)
                      +..+...... ..+...+.+|+++.+...
T Consensus       625 l~~~~~l~~~-~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  625 LEVTGRLESI-PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccccccccc-cchhhhcccccEEEeecc
Confidence            5555433122 222233555555555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.46  E-value=2.9e-08  Score=77.88  Aligned_cols=151  Identities=29%  Similarity=0.345  Sum_probs=70.4

Q ss_pred             CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcc
Q 037027           44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE  123 (205)
Q Consensus        44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  123 (205)
                      ..+.+++.+++.+|.+.. ....+..+.+|++|++++|.++..  ..+..+..|+.|++.+|.+. .+...  ..+..++
T Consensus        92 ~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~~~--~~l~~L~  165 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DISGL--ESLKSLK  165 (414)
T ss_pred             ccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hccCC--ccchhhh
Confidence            344455555555555542 111134455555555555555422  22233444555555555554 22221  2244455


Q ss_pred             eeeecccccccCCC-CCcCCCCcceEEEeeccee----------------------ecccCccccccC--CceEEEeecc
Q 037027          124 YISLSQNMFHGGIP-SALSKCTYLQILGLSFNDF----------------------SGAIPKEIGNVT--KLKELYLVRN  178 (205)
Q Consensus       124 ~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~----------------------~~~~~~~~~~~~--~L~~l~l~~~  178 (205)
                      .+++++|.+..... . ...+.+++.+++.+|.+                      ....+  +....  +|+.+++.+|
T Consensus       166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n  242 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGN  242 (414)
T ss_pred             cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccC
Confidence            55555555443211 1 23344444444444433                      21111  11111  2677777777


Q ss_pred             cccccCchhccCCCCCcEEeccCCcC
Q 037027          179 RLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       179 ~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      ++. .+++.+..+..+..+++.+|.+
T Consensus       243 ~i~-~~~~~~~~~~~l~~l~~~~n~~  267 (414)
T KOG0531|consen  243 RIS-RSPEGLENLKNLPVLDLSSNRI  267 (414)
T ss_pred             ccc-cccccccccccccccchhhccc
Confidence            776 3335566666777777776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.34  E-value=5.5e-07  Score=47.05  Aligned_cols=36  Identities=33%  Similarity=0.517  Sum_probs=15.8

Q ss_pred             cceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          145 YLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       145 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +|++|++++|++. .++..+..+++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3445555555444 22333444555555555555444

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.31  E-value=6.6e-07  Score=75.83  Aligned_cols=128  Identities=27%  Similarity=0.342  Sum_probs=68.1

Q ss_pred             CCCcEEEeecCcceeecCccccCCCCccEEEecCcc--cccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcce
Q 037027           47 SSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ--LSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEY  124 (205)
Q Consensus        47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  124 (205)
                      ...+++.+.++.+. ..+.+. ..+.|++|-+..+.  +.......|..++.|+.|++++|.--+++|..+ +.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhc
Confidence            34555666555554 222222 23356666665554  222333345556666666666553333555555 55566666


Q ss_pred             eeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecc
Q 037027          125 ISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN  178 (205)
Q Consensus       125 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  178 (205)
                      |++++..+. .+|..+..++.|.+|++..+......+.....+++|++|.+...
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            666666665 45666666666666666655433333444445566666655554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.27  E-value=5.6e-09  Score=84.20  Aligned_cols=126  Identities=25%  Similarity=0.310  Sum_probs=82.5

Q ss_pred             CcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeec
Q 037027           49 LQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS  128 (205)
Q Consensus        49 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~  128 (205)
                      |...+++.|.+. ....++..++.++.|++++|+++..  ..++.+++|++|+++.|.+. .++..--.++ .|+.|.+.
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            333444444444 3444555677788888888888743  26778888888888888876 6665432233 38888888


Q ss_pred             ccccccCCCCCcCCCCcceEEEeecceeeccc-CccccccCCceEEEeeccccc
Q 037027          129 QNMFHGGIPSALSKCTYLQILGLSFNDFSGAI-PKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       129 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +|.++..  ..+.++++|+.||++.|-+.+.. -.-++.+..|+.|+|.||++-
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8877532  33567788888888888664321 112345677888888888763

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=4.9e-07  Score=66.10  Aligned_cols=160  Identities=18%  Similarity=0.127  Sum_probs=91.0

Q ss_pred             CCCCcEEEeecCcceeec--CccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcc
Q 037027           46 LSSLQSLNLSFNRLSGSI--PSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE  123 (205)
Q Consensus        46 ~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  123 (205)
                      .+.++.+++.+|.+.+..  ...+..+|.|++|+++.|++.......-.+..+|+++.+.++.+...........+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            456777888888776442  234467788888888888766322211134567777777777665444444445666667


Q ss_pred             eeeecccccccC--CCCCc---------------------------CCCCcceEEEeecceeecc-cCccccccCCceEE
Q 037027          124 YISLSQNMFHGG--IPSAL---------------------------SKCTYLQILGLSFNDFSGA-IPKEIGNVTKLKEL  173 (205)
Q Consensus       124 ~l~l~~~~~~~~--~~~~~---------------------------~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l  173 (205)
                      .+.++.|+....  ..+..                           +.++++..+.+..|++.+. .....-.++++.-|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            777766633210  00111                           1123333344444433211 11222334566667


Q ss_pred             EeecccccccC-chhccCCCCCcEEeccCCcCC
Q 037027          174 YLVRNRLQGEI-PRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       174 ~l~~~~l~~~~-~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      +++.++|.+.. -++++.+++|+.|.+.++|+.
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            77777776532 377888899999999888863

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.23  E-value=4.6e-08  Score=79.10  Aligned_cols=102  Identities=32%  Similarity=0.350  Sum_probs=57.9

Q ss_pred             CccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEe
Q 037027           96 SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYL  175 (205)
Q Consensus        96 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l  175 (205)
                      +|.+.+.+.|.+. .+...+ +-++.++.|+++.|+++..  +.++.++.|.+||++.|.++. .|..-..-++|+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhhheeeee
Confidence            3444444444443 333333 4456677777777777532  366677777777777777663 3333222334777777


Q ss_pred             ecccccccCchhccCCCCCcEEeccCCcC
Q 037027          176 VRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       176 ~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      ++|.++ . ...+.++++|+.||++.|-|
T Consensus       240 rnN~l~-t-L~gie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  240 RNNALT-T-LRGIENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             cccHHH-h-hhhHHhhhhhhccchhHhhh
Confidence            777665 2 23445666666666666643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.18  E-value=8.9e-08  Score=75.20  Aligned_cols=129  Identities=29%  Similarity=0.395  Sum_probs=97.6

Q ss_pred             CCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcce
Q 037027           45 NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEY  124 (205)
Q Consensus        45 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  124 (205)
                      .+..++.+.+..+.+.. ....+..+.++..+++..+.+. .....+..+.+|++|+++.|.|. .+..-  ..++.|+.
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~~l--~~l~~L~~  144 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLEGL--STLTLLKE  144 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cccch--hhccchhh
Confidence            45667777777777763 3445678899999999999997 33333677899999999999997 44432  44667999


Q ss_pred             eeecccccccCCCCCcCCCCcceEEEeecceeecccC-ccccccCCceEEEeeccccc
Q 037027          125 ISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIP-KEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       125 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~  181 (205)
                      |++.+|.+...  +.+..++.|+.+++++|.+..... . ...+.+++.+++.+|.+.
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            99999999743  445568999999999998864433 2 466888888888888775

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.13  E-value=5.7e-06  Score=57.23  Aligned_cols=103  Identities=21%  Similarity=0.223  Sum_probs=54.1

Q ss_pred             ccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccC-CCCCcCCCCcceEEEe
Q 037027           73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG-IPSALSKCTYLQILGL  151 (205)
Q Consensus        73 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l  151 (205)
                      ...+++++|.+.  -...|..+..|.+|.+.+|.|+ .+...+-..++++..|.+.+|++... ..+.+..++.|+.|.+
T Consensus        44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            445556555543  1223445556666666666665 55554444456666666666665431 1133455566666666


Q ss_pred             ecceeecccC---ccccccCCceEEEeecc
Q 037027          152 SFNDFSGAIP---KEIGNVTKLKELYLVRN  178 (205)
Q Consensus       152 ~~~~~~~~~~---~~~~~~~~L~~l~l~~~  178 (205)
                      -+|++....-   ..++.+++|++|+++.-
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhh
Confidence            6665542211   23344566666665554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.09  E-value=3e-05  Score=50.63  Aligned_cols=122  Identities=21%  Similarity=0.255  Sum_probs=42.6

Q ss_pred             cccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCc
Q 037027           66 ATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY  145 (205)
Q Consensus        66 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  145 (205)
                      +|..+.+|+.+.+.. .+.......+..+.+|+.+.+..+ +. .+....+..++.++.+.+.. .+.......+..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            344444444444432 122222333444444555555443 33 33433444554555555544 222223344555666


Q ss_pred             ceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCC
Q 037027          146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAEL  194 (205)
Q Consensus       146 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L  194 (205)
                      ++.+.+..+ +.......+..+ .++.+.+.. .++......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            666666543 322334444444 666666554 3332444566666555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.05  E-value=1.1e-06  Score=72.62  Aligned_cols=132  Identities=21%  Similarity=0.303  Sum_probs=88.8

Q ss_pred             CCccEEEecCcccc-cCCCcccc-CCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceE
Q 037027           71 HTLKYVDLRGNQLS-GAFPSFIF-NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQI  148 (205)
Q Consensus        71 ~~L~~L~l~~~~~~-~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  148 (205)
                      .+|++|++++...- ...+..++ -+|.|++|.+.+-.+...--...+..+|+|..||+++.+++..  ..+..+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            46888898885432 12222232 4789999998887664222234557889999999999988743  66788888998


Q ss_pred             EEeecceeec-ccCccccccCCceEEEeeccccccc------CchhccCCCCCcEEeccCCcC
Q 037027          149 LGLSFNDFSG-AIPKEIGNVTKLKELYLVRNRLQGE------IPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       149 l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~l~~~------~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      |.+.+-.+.. ..-..+..+++|+.||++.....+.      .-+....+|+|+.||.+++.+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            8877755532 2223456789999999998754421      113333578999999988765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=7e-08  Score=70.38  Aligned_cols=157  Identities=20%  Similarity=0.164  Sum_probs=104.5

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCc-ceee-cCccccCCCCccEEEecCccccc-CCCccccC-CCCc
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNR-LSGS-IPSATFITHTLKYVDLRGNQLSG-AFPSFIFN-KSSL   97 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~-l~~L   97 (205)
                      +.+++.+++.|+.+...+...+++-++|+.++++.+. ++.. ....+..+..|+.|+++.|.... ........ -..|
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l  288 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL  288 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence            3467788888888877777788888999999998764 4422 22345788999999999997652 22222222 2467


Q ss_pred             cEEEcccccCC--cccCcccccCCCCcceeeeccccc-ccCCCCCcCCCCcceEEEeeccee-ecccCccccccCCceEE
Q 037027           98 QDLDLSYNALS--GEIPANICSNLPFLEYISLSQNMF-HGGIPSALSKCTYLQILGLSFNDF-SGAIPKEIGNVTKLKEL  173 (205)
Q Consensus        98 ~~L~l~~~~~~--~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~l  173 (205)
                      ..|+++++.-.  .....-+...++++..|++++|.. +......+..++.|+++.++.|.. .....-.+...++|.+|
T Consensus       289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL  368 (419)
T KOG2120|consen  289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL  368 (419)
T ss_pred             hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEE
Confidence            77888876321  111112235678999999998854 322334567788899999999853 22222344667889999


Q ss_pred             Eeecc
Q 037027          174 YLVRN  178 (205)
Q Consensus       174 ~l~~~  178 (205)
                      ++-++
T Consensus       369 dv~g~  373 (419)
T KOG2120|consen  369 DVFGC  373 (419)
T ss_pred             Eeccc
Confidence            88776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.97  E-value=3.1e-07  Score=59.59  Aligned_cols=85  Identities=26%  Similarity=0.376  Sum_probs=43.2

Q ss_pred             CCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEE
Q 037027           94 KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKEL  173 (205)
Q Consensus        94 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  173 (205)
                      ..+|...++++|.+. .++..+-...+.+.++++.+|.+. ..|..+..++.|+.+.+..|++. ..|+.+..+.++..|
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            344555555555554 444444344445555555555555 33444555555555555555554 334444445555555


Q ss_pred             Eeeccccc
Q 037027          174 YLVRNRLQ  181 (205)
Q Consensus       174 ~l~~~~l~  181 (205)
                      +..+|.+.
T Consensus       129 ds~~na~~  136 (177)
T KOG4579|consen  129 DSPENARA  136 (177)
T ss_pred             cCCCCccc
Confidence            55555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.94  E-value=2e-05  Score=54.58  Aligned_cols=102  Identities=22%  Similarity=0.196  Sum_probs=42.9

Q ss_pred             CcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccC-cccccCCCCcceeee
Q 037027           49 LQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIP-ANICSNLPFLEYISL  127 (205)
Q Consensus        49 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~l~l  127 (205)
                      ...+++.+|.+.  -...|..++.|.+|.+.+|.++.+.|..-..++.|..|.+.+|++. .+. -.-...++.|+.|.+
T Consensus        44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeee
Confidence            344444444443  1223344445555555555554333333333444555555555443 221 111133445555555


Q ss_pred             cccccccC---CCCCcCCCCcceEEEeec
Q 037027          128 SQNMFHGG---IPSALSKCTYLQILGLSF  153 (205)
Q Consensus       128 ~~~~~~~~---~~~~~~~~~~L~~l~l~~  153 (205)
                      -+|.+...   .---++.+++|+.||+..
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            55544320   011233445555555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.86  E-value=0.00013  Score=47.51  Aligned_cols=122  Identities=24%  Similarity=0.239  Sum_probs=48.5

Q ss_pred             CCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCC
Q 037027           42 QLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF  121 (205)
Q Consensus        42 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  121 (205)
                      .|.++.+|+.+.+.. .+......+|..+..|+.+.+... +.......+..+..++.+.+.. .+. .+....+..++.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence            455555666666553 344445556666666666666553 3323334445555666666654 332 344444455666


Q ss_pred             cceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCc
Q 037027          122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKL  170 (205)
Q Consensus       122 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L  170 (205)
                      ++.+.+..+ +.......+..+ +++.+.+..+ +.......+..+++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-ITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TTB--SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECCC-ccEECCccccccccC
Confidence            666666543 332333445555 6666665542 222333444444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.79  E-value=3.4e-05  Score=40.23  Aligned_cols=34  Identities=35%  Similarity=0.554  Sum_probs=13.0

Q ss_pred             ccEEEecCcccccCCCccccCCCCccEEEcccccC
Q 037027           73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNAL  107 (205)
Q Consensus        73 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  107 (205)
                      |++|++.+|.++ .++..+..+++|+.|++++|.+
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            344444444443 2222234444444444444443

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.70  E-value=1.9e-06  Score=56.00  Aligned_cols=105  Identities=23%  Similarity=0.263  Sum_probs=65.6

Q ss_pred             EEEEEecCCcccccCCCC---CCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           25 VTVFNVSGLNLTGTIPSQ---LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        25 l~~l~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      +..++++.|.+. .+++.   +.....|+..++++|.+.+..+.....++.++.+++.+|.+. ..|+.+..++.|+.++
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            345666666554 22222   223345666777777777433333345557777888888777 5666677788888888


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFH  133 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  133 (205)
                      ++.|.+. ..++-++ .+.++..|+..++.+.
T Consensus       107 l~~N~l~-~~p~vi~-~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIA-PLIKLDMLDSPENARA  136 (177)
T ss_pred             cccCccc-cchHHHH-HHHhHHHhcCCCCccc
Confidence            8888776 5555453 3666677777666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=3.5e-06  Score=61.77  Aligned_cols=112  Identities=23%  Similarity=0.204  Sum_probs=70.0

Q ss_pred             CCCCCCCcEEEeecCcceeecC-ccc-cCCCCccEEEecCcccccC--CCccccCCCCccEEEcccccCCcccCcccccC
Q 037027           43 LGNLSSLQSLNLSFNRLSGSIP-SAT-FITHTLKYVDLRGNQLSGA--FPSFIFNKSSLQDLDLSYNALSGEIPANICSN  118 (205)
Q Consensus        43 ~~~~~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  118 (205)
                      ++..+.++.+.+.++.+..... ..| ..++.++.+++.+|.+++.  ....+..+++|++|+++.|++...+ ......
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p  119 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLP  119 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCccc
Confidence            3334445566666665541111 111 3456788999999988742  2334457899999999999887333 323235


Q ss_pred             CCCcceeeeccccccc-CCCCCcCCCCcceEEEeecce
Q 037027          119 LPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFND  155 (205)
Q Consensus       119 ~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~  155 (205)
                      ..+|+++-+.+..+.. .....+..++.++.++++.|.
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            6788888887776542 223445667778888888873

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.44  E-value=0.0015  Score=50.98  Aligned_cols=133  Identities=15%  Similarity=0.201  Sum_probs=73.9

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcc-cccCCCccccCCCCccEEE
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ-LSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~  101 (205)
                      .+++.|++++|.+. .+|. +  -.+|+.|.+.++.-....+..+  ..+|+.|.+.+|. +. .+|      .+|++|+
T Consensus        52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceEE
Confidence            46778888888665 3442 1  2358888887754332344333  3578888888873 32 333      3466777


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccc--cCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFH--GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN  178 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  178 (205)
                      +..+... .+.    .-.+.|+.|.+..++..  ...+..  -..+|+.|++.+|... ..|..+  ..+|++|++..+
T Consensus       119 L~~n~~~-~L~----~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~n  187 (426)
T PRK15386        119 IKGSATD-SIK----NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL--PESLQSITLHIE  187 (426)
T ss_pred             eCCCCCc-ccc----cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc--cccCcEEEeccc
Confidence            7655443 221    11234666666433211  011111  1257899999888754 334333  368888888765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.39  E-value=1.3e-05  Score=58.09  Aligned_cols=135  Identities=19%  Similarity=0.165  Sum_probs=62.6

Q ss_pred             CceEEEEEecCCcccccCCCC----CCCCCCCcEEEeecCcceeecCcc-------------ccCCCCccEEEecCcccc
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQ----LGNLSSLQSLNLSFNRLSGSIPSA-------------TFITHTLKYVDLRGNQLS   84 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~   84 (205)
                      +|++..++++.|-+....|+.    +++-..|.+|.+++|.+....-..             ...-|.|+++....|.+.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            345666666666554333332    334455666666666554111111             112345666666665544


Q ss_pred             cCCC----ccccCCCCccEEEcccccCCcccC-ccc---ccCCCCcceeeeccccccc----CCCCCcCCCCcceEEEee
Q 037027           85 GAFP----SFIFNKSSLQDLDLSYNALSGEIP-ANI---CSNLPFLEYISLSQNMFHG----GIPSALSKCTYLQILGLS  152 (205)
Q Consensus        85 ~~~~----~~l~~l~~L~~L~l~~~~~~~~~~-~~~---~~~~~~L~~l~l~~~~~~~----~~~~~~~~~~~L~~l~l~  152 (205)
                      .-..    ..+.....|+++.+..|.|..+.. .-.   ...+.+|+.|++..|.++-    .+..+++.++.|+.|.+.
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            2111    112223355566666665542211 100   1223556666666665542    223444555556666666


Q ss_pred             ccee
Q 037027          153 FNDF  156 (205)
Q Consensus       153 ~~~~  156 (205)
                      +|-+
T Consensus       251 DCll  254 (388)
T COG5238         251 DCLL  254 (388)
T ss_pred             chhh
Confidence            6654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.38  E-value=3.2e-05  Score=64.26  Aligned_cols=133  Identities=21%  Similarity=0.207  Sum_probs=79.6

Q ss_pred             CCcEEEeecCcce--eecCccccCCCCccEEEecCcccccC-CCccccCCCCccEEEcccccCCcccCcccccCCCCcce
Q 037027           48 SLQSLNLSFNRLS--GSIPSATFITHTLKYVDLRGNQLSGA-FPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEY  124 (205)
Q Consensus        48 ~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  124 (205)
                      +|++|++.+...-  +....--.-+|+|+.|.+.+-.+... +.....++++|..||+++++++ .+ ..+ +.+++|+.
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq~  199 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQV  199 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHH-hccccHHH
Confidence            5677777664322  11111123467888888877655422 2222345788888888888886 44 223 56778888


Q ss_pred             eeecccccccC-CCCCcCCCCcceEEEeecceeeccc--C----ccccccCCceEEEeeccccccc
Q 037027          125 ISLSQNMFHGG-IPSALSKCTYLQILGLSFNDFSGAI--P----KEIGNVTKLKELYLVRNRLQGE  183 (205)
Q Consensus       125 l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~--~----~~~~~~~~L~~l~l~~~~l~~~  183 (205)
                      |.+.+-.+... .-..+..+++|+.||++........  .    ..-..+|.|+.|+.+++.+.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            87776665431 1134567888888888886543211  1    1123467888888888777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.33  E-value=9.7e-05  Score=53.14  Aligned_cols=87  Identities=20%  Similarity=0.191  Sum_probs=38.1

Q ss_pred             CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCc--ccccCCCccccCCCCccEEEcccccCCcccC-cccccCCC
Q 037027           44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGN--QLSGAFPSFIFNKSSLQDLDLSYNALSGEIP-ANICSNLP  120 (205)
Q Consensus        44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~  120 (205)
                      ..+.+++.+++.+..++  ....+..+++|+.|.++.|  .+..-+......+++|+++++++|++.. +. ..-...+.
T Consensus        40 d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELE  116 (260)
T ss_pred             ccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhc
Confidence            33444555554444443  2223445555555555555  2322222222334555555555555531 11 01112334


Q ss_pred             Ccceeeecccccc
Q 037027          121 FLEYISLSQNMFH  133 (205)
Q Consensus       121 ~L~~l~l~~~~~~  133 (205)
                      +|..|++++|..+
T Consensus       117 nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  117 NLKSLDLFNCSVT  129 (260)
T ss_pred             chhhhhcccCCcc
Confidence            4555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.28  E-value=0.0023  Score=49.93  Aligned_cols=54  Identities=15%  Similarity=0.222  Sum_probs=26.7

Q ss_pred             CCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccc
Q 037027           46 LSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN  105 (205)
Q Consensus        46 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  105 (205)
                      +.+++.|++++|.+. .+|   ....+|++|.+.+|.-...+|..+  ..+|++|.+.+|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            355666666666554 222   122346666666544322334333  235666666655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=1.3e-05  Score=58.35  Aligned_cols=100  Identities=29%  Similarity=0.398  Sum_probs=69.9

Q ss_pred             CCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeeccc-CccccccCCceE
Q 037027           94 KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI-PKEIGNVTKLKE  172 (205)
Q Consensus        94 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~  172 (205)
                      +.+.+.|+..++.++ .+  +++..++.|+.|.++-|+|+.  ...+..|++|..|.|..|.+.+.. -.-+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            445677888888886 23  456788999999999998864  345778899999999888775321 134467889999


Q ss_pred             EEeecccccccCc-----hhccCCCCCcEEe
Q 037027          173 LYLVRNRLQGEIP-----RELSNLAELELMS  198 (205)
Q Consensus       173 l~l~~~~l~~~~~-----~~l~~~~~L~~l~  198 (205)
                      |+|..|+=-+..+     .++.-+|+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9998885443222     4455566666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=2.4e-05  Score=57.01  Aligned_cols=101  Identities=23%  Similarity=0.172  Sum_probs=70.7

Q ss_pred             CCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCC-CCcCCCCcce
Q 037027           69 ITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP-SALSKCTYLQ  147 (205)
Q Consensus        69 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~  147 (205)
                      .+.+++.|+..+|.+.++  ....+++.|+.|.++-|.|+ .+..  +..+..|+.+++-.|.|.+... .-+.++++|+
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            355677888888887632  23346888999999999987 5543  2557889999999998864211 3467889999


Q ss_pred             EEEeecceeecccC-----ccccccCCceEEE
Q 037027          148 ILGLSFNDFSGAIP-----KEIGNVTKLKELY  174 (205)
Q Consensus       148 ~l~l~~~~~~~~~~-----~~~~~~~~L~~l~  174 (205)
                      .|.|..|+..+..+     ..+..+|+|+.|+
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99998887654333     2344567777765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.72  E-value=0.00049  Score=49.61  Aligned_cols=107  Identities=21%  Similarity=0.139  Sum_probs=64.5

Q ss_pred             ccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccc--cCCcccCcccccCCCCcceeeeccccccc-CCCCCcC
Q 037027           65 SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN--ALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALS  141 (205)
Q Consensus        65 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~  141 (205)
                      +....+..++.+.+.++..+.  -..+..+++|+.|.++.|  .+.+.+.... ...++|++++++.|.++. .....+.
T Consensus        37 gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   37 GLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             cccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhh
Confidence            333445567777776666542  234456788999999988  4443333322 455889999999998863 1112345


Q ss_pred             CCCcceEEEeecceeeccc---CccccccCCceEEE
Q 037027          142 KCTYLQILGLSFNDFSGAI---PKEIGNVTKLKELY  174 (205)
Q Consensus       142 ~~~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~l~  174 (205)
                      .+.+|..|++.+|......   -..+.-+++|.+++
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            5667788888888654311   12334456666654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.00026  Score=49.16  Aligned_cols=80  Identities=19%  Similarity=0.184  Sum_probs=48.9

Q ss_pred             cceeeecccccccCCCCCcCCCCcceEEEeeccee-ecccCccc-cccCCceEEEeecc-cccccCchhccCCCCCcEEe
Q 037027          122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF-SGAIPKEI-GNVTKLKELYLVRN-RLQGEIPRELSNLAELELMS  198 (205)
Q Consensus       122 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~-~~~~~L~~l~l~~~-~l~~~~~~~l~~~~~L~~l~  198 (205)
                      ++.++-+++.|..+.-+.+..++.++.|.+.+|.- .+..-..+ ...++|+.|++++| .|++-....+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            56666667766655555666667777777777642 22111111 23567777777777 57766566666777777666


Q ss_pred             ccC
Q 037027          199 LFD  201 (205)
Q Consensus       199 l~~  201 (205)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.68  E-value=0.0055  Score=26.56  Aligned_cols=19  Identities=42%  Similarity=0.524  Sum_probs=10.6

Q ss_pred             ceEEEeecccccccCchhcc
Q 037027          170 LKELYLVRNRLQGEIPRELS  189 (205)
Q Consensus       170 L~~l~l~~~~l~~~~~~~l~  189 (205)
                      |++|++++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            556666666666 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.24  E-value=0.0001  Score=56.50  Aligned_cols=179  Identities=17%  Similarity=0.124  Sum_probs=93.2

Q ss_pred             eEEEEEecCCcccccC--CCCCCCCCCCcEEEeecCc-ceeecCc-cccCCCCccEEEecCcc-cccCCCccc-cCCCCc
Q 037027           24 RVTVFNVSGLNLTGTI--PSQLGNLSSLQSLNLSFNR-LSGSIPS-ATFITHTLKYVDLRGNQ-LSGAFPSFI-FNKSSL   97 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~~~l-~~l~~L   97 (205)
                      .++.|.++|+.-.+..  ......++++++|.+.++. +++.... .-..+.+++++++..|. +++..-..+ ..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            5778888888654332  2334568889998888875 3322211 22456778888888854 333222222 346788


Q ss_pred             cEEEcccc-cCCcccCcccccCCCCcceeeeccc--------------------------c-cccCCC-CCcCCCCcceE
Q 037027           98 QDLDLSYN-ALSGEIPANICSNLPFLEYISLSQN--------------------------M-FHGGIP-SALSKCTYLQI  148 (205)
Q Consensus        98 ~~L~l~~~-~~~~~~~~~~~~~~~~L~~l~l~~~--------------------------~-~~~~~~-~~~~~~~~L~~  148 (205)
                      ++++++++ .+++.....+.++...++.+...+|                          . +++... ..-..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            88888877 3332222223344444444443333                          1 111100 01122345556


Q ss_pred             EEeeccee-eccc-CccccccCCceEEEeeccc-ccccCchhcc-CCCCCcEEeccCC
Q 037027          149 LGLSFNDF-SGAI-PKEIGNVTKLKELYLVRNR-LQGEIPRELS-NLAELELMSLFDN  202 (205)
Q Consensus       149 l~l~~~~~-~~~~-~~~~~~~~~L~~l~l~~~~-l~~~~~~~l~-~~~~L~~l~l~~n  202 (205)
                      ++.+++.. .+.. ...-.++.+|+.+-+.+|+ +++.....++ ++++|+.+++..+
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~  356 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC  356 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence            65555432 1111 1112455677777777773 5544444443 5667777776654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.89  E-value=0.0021  Score=51.50  Aligned_cols=86  Identities=23%  Similarity=0.102  Sum_probs=43.0

Q ss_pred             CCceEEEEEecCC-cccccC----CCCCCCCCCCcEEEeecCc-ceeecCcccc-CCCCccEEEecCcc-cccCCCc-cc
Q 037027           21 HSHRVTVFNVSGL-NLTGTI----PSQLGNLSSLQSLNLSFNR-LSGSIPSATF-ITHTLKYVDLRGNQ-LSGAFPS-FI   91 (205)
Q Consensus        21 ~~~~l~~l~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~~-~l   91 (205)
                      ..+.++.|+++++ ......    ......+++++.+++..+. +++....++. .+++|+.|.+.+|. +++..-. ..
T Consensus       212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~  291 (482)
T KOG1947|consen  212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA  291 (482)
T ss_pred             hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence            3446666777652 111111    1122345667777777665 4433333322 25677777766665 3322111 12


Q ss_pred             cCCCCccEEEccccc
Q 037027           92 FNKSSLQDLDLSYNA  106 (205)
Q Consensus        92 ~~l~~L~~L~l~~~~  106 (205)
                      ..++.|++|++..+.
T Consensus       292 ~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  292 ERCPSLRELDLSGCH  306 (482)
T ss_pred             HhcCcccEEeeecCc
Confidence            345667777777663

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.86  E-value=2.5e-05  Score=62.18  Aligned_cols=180  Identities=23%  Similarity=0.269  Sum_probs=109.8

Q ss_pred             EEEEEecCCccccc----CCCCCCCCCCCcEEEeecCcceeecCc----cccCC-CCccEEEecCcccccCC----Cccc
Q 037027           25 VTVFNVSGLNLTGT----IPSQLGNLSSLQSLNLSFNRLSGSIPS----ATFIT-HTLKYVDLRGNQLSGAF----PSFI   91 (205)
Q Consensus        25 l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~----~~~l   91 (205)
                      +..+++.+|.+...    ....+...+.|..+++.+|.+.+....    .+... ..+++|.+..|.++...    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55677777776533    223344567788888888887633222    22222 45777788777776432    2233


Q ss_pred             cCCCCccEEEcccccCCcc----cCccc---ccCCCCcceeeecccccccC----CCCCcCCCCc-ceEEEeecceeecc
Q 037027           92 FNKSSLQDLDLSYNALSGE----IPANI---CSNLPFLEYISLSQNMFHGG----IPSALSKCTY-LQILGLSFNDFSGA  159 (205)
Q Consensus        92 ~~l~~L~~L~l~~~~~~~~----~~~~~---~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~-L~~l~l~~~~~~~~  159 (205)
                      ....+++.++++.|.+...    +....   +....+++++.+.+|.++..    ....+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            3466788888888866311    11111   12356688888888876531    1122334444 56688888877543


Q ss_pred             c----Ccccccc-CCceEEEeecccccc----cCchhccCCCCCcEEeccCCcC
Q 037027          160 I----PKEIGNV-TKLKELYLVRNRLQG----EIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       160 ~----~~~~~~~-~~L~~l~l~~~~l~~----~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      .    .+.+... +.++++++..|.+++    ..++.+..++.++.+.+..|++
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            2    2333334 577889999998875    3456666778888888888876

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.64  E-value=0.054  Score=21.76  Aligned_cols=12  Identities=33%  Similarity=0.526  Sum_probs=5.6

Q ss_pred             CCcEEeccCCcC
Q 037027          193 ELELMSLFDNEL  204 (205)
Q Consensus       193 ~L~~l~l~~n~l  204 (205)
                      +|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            456666666654

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.33  E-value=0.0059  Score=48.89  Aligned_cols=129  Identities=22%  Similarity=0.163  Sum_probs=61.7

Q ss_pred             CCCccEEEecCcccccC--CCccccCCCCccEEEcccc-c-CC--cccCcccccCCCCcceeeecccc-cccCCCCCcC-
Q 037027           70 THTLKYVDLRGNQLSGA--FPSFIFNKSSLQDLDLSYN-A-LS--GEIPANICSNLPFLEYISLSQNM-FHGGIPSALS-  141 (205)
Q Consensus        70 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~-~~--~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~-  141 (205)
                      .+.|+.+.+.++.-...  ........+.|+.|++..+ . +.  ..........++.++.+++.++. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45666666666543212  1223334566777776652 1 11  00111122344666777777766 4432222222 


Q ss_pred             CCCcceEEEeecce-eeccc-CccccccCCceEEEeecccc-ccc-CchhccCCCCCcEEe
Q 037027          142 KCTYLQILGLSFND-FSGAI-PKEIGNVTKLKELYLVRNRL-QGE-IPRELSNLAELELMS  198 (205)
Q Consensus       142 ~~~~L~~l~l~~~~-~~~~~-~~~~~~~~~L~~l~l~~~~l-~~~-~~~~l~~~~~L~~l~  198 (205)
                      .+++|+.|.+.+|. +.+.. ......++.|++|++++|.. ++. +.....++++++.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~  327 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK  327 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence            26677777766665 33222 22234466677777777643 222 222233455554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=93.09  E-value=0.028  Score=43.70  Aligned_cols=133  Identities=21%  Similarity=0.150  Sum_probs=70.0

Q ss_pred             CCCccEEEecCcccc-cCCCcc-ccCCCCccEEEcccccC-CcccCcccccCCCCcceeeeccccccc--CCCCCcCCCC
Q 037027           70 THTLKYVDLRGNQLS-GAFPSF-IFNKSSLQDLDLSYNAL-SGEIPANICSNLPFLEYISLSQNMFHG--GIPSALSKCT  144 (205)
Q Consensus        70 l~~L~~L~l~~~~~~-~~~~~~-l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~  144 (205)
                      +..||++..+++... +..-.. ..+..+|+.+.+..++. ++.....+-++++.|+.+++.++....  .+...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            445666666655321 111111 12346677777777642 211122233456677777777764321  1222234567


Q ss_pred             cceEEEeecceee-cccCccc----cccCCceEEEeeccc-ccccCchhccCCCCCcEEeccCC
Q 037027          145 YLQILGLSFNDFS-GAIPKEI----GNVTKLKELYLVRNR-LQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       145 ~L~~l~l~~~~~~-~~~~~~~----~~~~~L~~l~l~~~~-l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      .|+.+.+++|... +.....+    .....++.+.+..++ +++...+.+..+++|+.+++.++
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            7777777776542 2211111    234566677777774 34455566667777777777665

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.01  E-value=0.0062  Score=42.56  Aligned_cols=33  Identities=15%  Similarity=0.129  Sum_probs=14.3

Q ss_pred             ccEEEecCcccccCCCccccCCCCccEEEcccc
Q 037027           73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN  105 (205)
Q Consensus        73 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  105 (205)
                      ++.++-+++.+...--+.+..+..++.|.+.++
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            444444444443332333344444444444444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.44  E-value=0.023  Score=25.06  Aligned_cols=16  Identities=31%  Similarity=0.466  Sum_probs=7.3

Q ss_pred             CCceEEEeeccccccc
Q 037027          168 TKLKELYLVRNRLQGE  183 (205)
Q Consensus       168 ~~L~~l~l~~~~l~~~  183 (205)
                      ++|++|++++|.+.+.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4455555555555543

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.26  E-value=0.1  Score=26.77  Aligned_cols=18  Identities=61%  Similarity=1.438  Sum_probs=12.2

Q ss_pred             CCCCCC--CCCCccceeeec
Q 037027            2 KNWNTS--SPVCNWTGVTCD   19 (205)
Q Consensus         2 ~~~~~~--~~~c~~~~~~~~   19 (205)
                      ..|...  .++|.|.|+.|.
T Consensus        24 ~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   24 SSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             TT--TT--S-CCCSTTEEE-
T ss_pred             ccCCCcCCCCCeeeccEEeC
Confidence            458887  799999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.53  E-value=0.16  Score=22.76  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=12.4

Q ss_pred             CCceEEEeecccccccCchhc
Q 037027          168 TKLKELYLVRNRLQGEIPREL  188 (205)
Q Consensus       168 ~~L~~l~l~~~~l~~~~~~~l  188 (205)
                      ++|++|++.+|.++...+.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456777777777764333333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.53  E-value=0.16  Score=22.76  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=12.4

Q ss_pred             CCceEEEeecccccccCchhc
Q 037027          168 TKLKELYLVRNRLQGEIPREL  188 (205)
Q Consensus       168 ~~L~~l~l~~~~l~~~~~~~l  188 (205)
                      ++|++|++.+|.++...+.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456777777777764333333

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.29  E-value=0.76  Score=21.03  Aligned_cols=13  Identities=31%  Similarity=0.457  Sum_probs=8.5

Q ss_pred             CCCcEEeccCCcC
Q 037027          192 AELELMSLFDNEL  204 (205)
Q Consensus       192 ~~L~~l~l~~n~l  204 (205)
                      ++|+.|++++|.+
T Consensus         2 ~~L~~LdL~~N~i   14 (28)
T smart00368        2 PSLRELDLSNNKL   14 (28)
T ss_pred             CccCEEECCCCCC
Confidence            4566777777765

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.47  E-value=0.96  Score=20.43  Aligned_cols=13  Identities=31%  Similarity=0.501  Sum_probs=7.1

Q ss_pred             CCCcEEeccCCcC
Q 037027          192 AELELMSLFDNEL  204 (205)
Q Consensus       192 ~~L~~l~l~~n~l  204 (205)
                      .+|+.|++++|.|
T Consensus         2 ~~L~~L~L~~NkI   14 (26)
T smart00365        2 TNLEELDLSQNKI   14 (26)
T ss_pred             CccCEEECCCCcc
Confidence            3455555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-20
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-04
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-20
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-04
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-14
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-06
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		6e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		9e-05
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		3e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 96/191 (50%), Gaps = 7/191 (3%)
Query: 17  TCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSATFIT-HTLKY 75
            CD     +T  ++SG +  G +P                    G +P  T +    LK 
Sbjct: 292 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 76  VDLRGNQLSGAFPSFIFNKS-SLQDLDLSYNALSGEIPANICSNLP-FLEYISLSQNMFH 133
           +DL  N+ SG  P  + N S SL  LDLS N  SG I  N+C N    L+ + L  N F 
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 134 GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAE 193
           G IP  LS C+ L  L LSFN  SG IP  +G+++KL++L L  N L+GEIP+EL  +  
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 194 LELMSLFDNEL 204
           LE + L  N+L
Sbjct: 468 LETLILDFNDL 478

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 56/163 (34%)
Query: 95  SSLQDLDLSYNALSGEIPA----NICSNLPF----------------------------- 121
           +SL  LDLS N+LSG +        CS L F                             
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 122 --------------------LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIP 161
                               L+++++S N   G +   +S+C  L+ L +S N+FS  IP
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 217
Query: 162 KEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
             +G+ + L+ L +  N+L G+  R +S   EL+L+++  N+ 
Sbjct: 218 F-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 96/191 (50%), Gaps = 7/191 (3%)
Query: 17  TCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSATFIT-HTLKY 75
            CD     +T  ++SG +  G +P                    G +P  T +    LK 
Sbjct: 289 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 76  VDLRGNQLSGAFPSFIFNKS-SLQDLDLSYNALSGEIPANICSNLP-FLEYISLSQNMFH 133
           +DL  N+ SG  P  + N S SL  LDLS N  SG I  N+C N    L+ + L  N F 
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 134 GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAE 193
           G IP  LS C+ L  L LSFN  SG IP  +G+++KL++L L  N L+GEIP+EL  +  
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 194 LELMSLFDNEL 204
           LE + L  N+L
Sbjct: 465 LETLILDFNDL 475

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 56/163 (34%)
Query: 95  SSLQDLDLSYNALSGEIPA----NICSNLPF----------------------------- 121
           +SL  LDLS N+LSG +        CS L F                             
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 122 --------------------LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIP 161
                               L+++++S N   G +   +S+C  L+ L +S N+FS  IP
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 214
Query: 162 KEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
             +G+ + L+ L +  N+L G+  R +S   EL+L+++  N+ 
Sbjct: 215 F-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Query: 4   WNTSSPVCN--WTGVTCDV--HSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXX---XXXX 56
           W  ++  CN  W GV CD    ++RV   ++SGLNL    P                   
Sbjct: 27  WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86
Query: 57  XXXXGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANIC 116
               G IP A      L Y+ +    +SGA P F+    +L  LD SYNALSG +P +I 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 117 SNLPFLEYISLSQNMFHGGIPSALSKCTYL-QILGLSFNDFSGAIPKEIGNVTKLKELYL 175
           S+LP L  I+   N   G IP +    + L   + +S N  +G IP    N+  L  + L
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 176 VRNRLQGE 183
            RN L+G+
Sbjct: 205 SRNMLEGD 212

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 73  LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM 131
           L Y+ L GNQL  + P+ +F+K ++L++L L  N L   +P  +   L  L Y++L+ N 
Sbjct: 87  LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQ 144
Query: 132 FHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNL 191
                     K T L  L LS+N            +T+LK+L L +N+L+         L
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204
Query: 192 AELELMSLFDN 202
             L+ + L DN
Sbjct: 205 TSLQYIWLHDN 215

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 62  SIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLP 120
           S+P  T I     Y+DL  N L  + P+ +F++ +SL  L L  N L   +P  + + L 
Sbjct: 21  SVP--TGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLT 76
Query: 121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180
            L Y++LS N           K T L+ L L+ N            +T+LK+L L +N+L
Sbjct: 77  SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 181 QGEIPRELSNLAELELMSLFDN 202
           +         L  L+ + L DN
Sbjct: 137 KSVPDGVFDRLTSLQYIWLHDN 158

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)
Query: 62  SIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNL 119
           S+PS  F   T L+ + L  N+L    P+ IF +  +L+ L ++ N L   +P  +   L
Sbjct: 51  SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQL 108
Query: 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRN 178
             L  + L +N      P      T L  L L +N+   ++PK +   +T LKEL L  N
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNN 167
Query: 179 RLQGEIPRELSNLAELELMSLFDNELQ 205
           +L+         L EL+ + L +N+L+
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLK 194

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 73  LKYVDLRGNQLSGAFPSFIFNK--SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
           L+ + L+ N L   F   +  K  SSL+ LD+S N+L+       C+    +  ++LS N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 131 MFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSN 190
           M  G +   L     +++L L  N+   +IPK++ ++  L+EL +  N+L+         
Sbjct: 439 MLTGSVFRCLPP--KVKVLDLH-NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495
Query: 191 LAELELMSLFDN 202
           L  L+ + L DN
Sbjct: 496 LTSLQYIWLHDN 507

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	8e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  185 bits (473), Expect = 1e-58
 Identities = 73/211 (34%), Positives = 102/211 (48%), Gaps = 10/211 (4%)

Query: 3   NWNTSSPVCN--WTGVTCDV--HSHRVTVFNVSGLNLTGT--IPSQLGNLSSLQSLNLS- 55
           +W  ++  CN  W GV CD    ++RV   ++SGLNL     IPS L NL  L  L +  
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 56  FNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANI 115
            N L G IP A      L Y+ +    +SGA P F+    +L  LD SYNALSG +P +I
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 116 CSNLPFLEYISLSQNMFHGGIPSALSKCTYL-QILGLSFNDFSGAIPKEIGNVTKLKELY 174
            S+LP L  I+   N   G IP +    + L   + +S N  +G IP    N+  L  + 
Sbjct: 146 -SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203

Query: 175 LVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           L RN L+G+      +    + + L  N L 
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  158 bits (402), Expect = 6e-48
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 5/178 (2%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATF-ITHTLKYVDLRGNQLS 84
              + S   L+GT+P  + +L +L  +    NR+SG+IP +    +     + +  N+L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
           G  P    N  +L  +DLS N L G+       +    + I L++N     +   +    
Sbjct: 188 GKIPPTFAN-LNLAFVDLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDLGK-VGLSK 244

Query: 145 YLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
            L  L L  N   G +P+ +  +  L  L +  N L GEIP +  NL   ++ +  +N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  136 bits (344), Expect = 2e-39
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 5/153 (3%)

Query: 34  NLTGTIPSQLGNLSSL-QSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF 92
            ++G IP   G+ S L  S+ +S NRL+G IP  TF    L +VDL  N L G       
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 93  NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLS 152
           +  + Q + L+ N+L+ ++          L  + L  N  +G +P  L++  +L  L +S
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 153 FNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIP 185
           FN+  G IP+  GN+ +        N+     P
Sbjct: 277 FNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.9 bits (211), Expect = 4e-20
 Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 86  AFPSFIFNKSSLQD----LDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG--GIPSA 139
                + N ++L       D       G +     +    +  + LS         IPS+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 140 LSKCTYLQILGLS-FNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMS 198
           L+   YL  L +   N+  G IP  I  +T+L  LY+    + G IP  LS +  L  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 199 LFDNELQ 205
              N L 
Sbjct: 132 FSYNALS 138

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ-LS 84
              ++    + GT+P  L  L  L SLN+SFN L G IP    +           N+ L 
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR-FDVSAYANNKCLC 305

Query: 85  GA 86
           G+
Sbjct: 306 GS 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  175 bits (446), Expect = 2e-51
 Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 14/211 (6%)

Query: 3   NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLT---GTIPSQLGNLSSLQSLNLSFNRL 59
           +W+++   C + GVTC     +VT  ++S   L      + S L +L+ L+SL LS + +
Sbjct: 32  DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI 89

Query: 60  SGSIPSATFITHTLKYVDLRGNQLSGAFPSF--IFNKSSLQDLDLSYNALSGEIPANICS 117
           +GS+         L  +DL  N LSG   +   + + S L+ L++S N L      +   
Sbjct: 90  NGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148

Query: 118 NLPFLEYISLSQNMFHGGIPSAL---SKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELY 174
            L  LE + LS N   G           C  L+ L +S N  SG +   +     L+ L 
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD 206

Query: 175 LVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           +  N     IP  L + + L+ + +  N+L 
Sbjct: 207 VSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  172 bits (437), Expect = 4e-50
 Identities = 77/183 (42%), Positives = 104/183 (56%), Gaps = 3/183 (1%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLS 84
           T  ++SG +  G +P   G+ S L+SL LS N  SG +P  T +    LK +DL  N+ S
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 85  GAFPSFIFN-KSSLQDLDLSYNALSGEIPANICSN-LPFLEYISLSQNMFHGGIPSALSK 142
           G  P  + N  +SL  LDLS N  SG I  N+C N    L+ + L  N F G IP  LS 
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
           C+ L  L LSFN  SG IP  +G+++KL++L L  N L+GEIP+EL  +  LE + L  N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 203 ELQ 205
           +L 
Sbjct: 477 DLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  168 bits (428), Expect = 7e-49
 Identities = 65/186 (34%), Positives = 92/186 (49%), Gaps = 5/186 (2%)

Query: 21  HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRG 80
               +   +VS  N +  IP  LG+ S+LQ L++S N+LSG    A      LK +++  
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 81  NQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL 140
           NQ  G  P       SLQ L L+ N  +GEIP  +      L  + LS N F+G +P   
Sbjct: 257 NQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 141 SKCTYLQILGLSFNDFSGAIPKE-IGNVTKLKELYLVRNRLQGEIPRELSNL-AELELMS 198
             C+ L+ L LS N+FSG +P + +  +  LK L L  N   GE+P  L+NL A L  + 
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 199 LFDNEL 204
           L  N  
Sbjct: 375 LSSNNF 380

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  165 bits (419), Expect = 1e-47
 Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 5/183 (2%)

Query: 26  TVFNVSGLNLTGTIP-SQLGNLSSLQSLNLSFNRLSGSIPSATF-ITHTLKYVDLRGNQL 83
               +S  N +G +P   L  +  L+ L+LSFN  SG +P +   ++ +L  +DL  N  
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 84  SGAFPSFIFN--KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALS 141
           SG     +    K++LQ+L L  N  +G+IP  +  N   L  + LS N   G IPS+L 
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLG 439

Query: 142 KCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD 201
             + L+ L L  N   G IP+E+  V  L+ L L  N L GEIP  LSN   L  +SL +
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 202 NEL 204
           N L
Sbjct: 500 NRL 502

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  163 bits (416), Expect = 3e-47
 Identities = 67/185 (36%), Positives = 86/185 (46%), Gaps = 3/185 (1%)

Query: 22  SHRVTVFNVSGLNLTGTIPSQLGN--LSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLR 79
           S  +   ++S  N +G I   L     ++LQ L L  N  +G IP        L  + L 
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 80  GNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSA 139
            N LSG  PS + + S L+DL L  N L GEIP  +   +  LE + L  N   G IPS 
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSG 485

Query: 140 LSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSL 199
           LS CT L  + LS N  +G IPK IG +  L  L L  N   G IP EL +   L  + L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 200 FDNEL 204
             N  
Sbjct: 546 NTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  161 bits (409), Expect = 3e-46
 Identities = 61/172 (35%), Positives = 84/172 (48%), Gaps = 5/172 (2%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
            L+GTIPS LG+LS L+ L L  N L G IP       TL+ + L  N L+G  PS + N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 94  KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF 153
            ++L  + LS N L+GEIP  I   L  L  + LS N F G IP+ L  C  L  L L+ 
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

Query: 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           N F+G IP  +   +      +  N + G+    + N    +      N L+
Sbjct: 548 NLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  159 bits (404), Expect = 2e-45
 Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 10/187 (5%)

Query: 23  HRVTVFNVSGLNLTGTIPSQL---GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLR 79
           + + V ++S  +++G              L+ L +S N++SG +  +      L+++D+ 
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVS 208

Query: 80  GNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSA 139
            N  S   P  + + S+LQ LD+S N LSG+    I S    L+ +++S N F G IP  
Sbjct: 209 SNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPP- 265

Query: 140 LSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRELSNLAELELMS 198
                 LQ L L+ N F+G IP  + G    L  L L  N   G +P    + + LE ++
Sbjct: 266 -LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 199 LFDNELQ 205
           L  N   
Sbjct: 325 LSSNNFS 331

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  144 bits (365), Expect = 3e-40
 Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 21/201 (10%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
               +   +LTG IPS L N ++L  ++LS NRL+G IP        L  + L  N  SG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANIC-------------------SNLPFLEYIS 126
             P+ + +  SL  LDL+ N  +G IPA +                     N    +   
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588

Query: 127 LSQNM--FHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEI 184
            + N+  F G     L++ +      ++   + G       N   +  L +  N L G I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 185 PRELSNLAELELMSLFDNELQ 205
           P+E+ ++  L +++L  N++ 
Sbjct: 649 PKEIGSMPYLFILNLGHNDIS 669

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  137 bits (347), Expect = 9e-38
 Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 7/182 (3%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGN--QL 83
              +++     GTIP+ +   S      ++ N ++G            K     GN  + 
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 84  SGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKC 143
            G     +   S+    +++     G        N   + ++ +S NM  G IP  +   
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 144 TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE 203
            YL IL L  ND SG+IP E+G++  L  L L  N+L G IP+ +S L  L  + L +N 
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715

Query: 204 LQ 205
           L 
Sbjct: 716 LS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  130 bits (328), Expect = 3e-35
 Identities = 44/161 (27%), Positives = 65/161 (40%), Gaps = 3/161 (1%)

Query: 28  FNVSGLNLTGTIPSQLGNLSSLQSLNLSFN--RLSGSIPSATFITHTLKYVDLRGNQLSG 85
             ++   + G     + N    +  + + N     G          T    ++      G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
                  N  S+  LD+SYN LSG IP  I  ++P+L  ++L  N   G IP  +     
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRG 681

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPR 186
           L IL LS N   G IP+ +  +T L E+ L  N L G IP 
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (262), Expect = 2e-26
 Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 25/137 (18%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
               N++     G       N  S+  L++S+N LSG IP                    
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE------------------ 651

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
                 I +   L  L+L +N +SG IP  +  +L  L  + LS N   G IP A+S  T
Sbjct: 652 ------IGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 145 YLQILGLSFNDFSGAIP 161
            L  + LS N+ SG IP
Sbjct: 705 MLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 7e-20
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
           +   ++S   L+G IP ++G++  L  LNL  N +SGSIP        L  +DL  N+L 
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPA-NICSNLPFLEYI 125
           G  P  +   + L ++DLS N LSG IP        P  +++
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (293), Expect = 1e-30
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 4/175 (2%)

Query: 33  LNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF 92
           L+  G         +SL+ L+LSFN +   + S       L+++D + + L       +F
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 93  NK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI-PSALSKCTYLQILG 150
               +L  LD+S+          I + L  LE + ++ N F     P   ++   L  L 
Sbjct: 418 LSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           LS        P    +++ L+ L +  N            L  L+++    N + 
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  115 bits (289), Expect = 4e-30
 Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 1/155 (0%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLRGNQLSGAFPSFIFNKSS 96
           T+ S    L  L+ L+   + L      + F++   L Y+D+       AF       SS
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 97  LQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF 156
           L+ L ++ N+       +I + L  L ++ LSQ       P+A +  + LQ+L +S N+F
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 157 SGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNL 191
                     +  L+ L    N +     +EL + 
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  111 bits (280), Expect = 7e-29
 Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 6/185 (3%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
            V ++S   +         +LS L +L L+ N +      A     +L+ +      L+ 
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
                I +  +L++L++++N +         SNL  LE++ LS N       + L     
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 146 LQI----LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLF 200
           + +    L LS N  +  I        +L +L L  N     + +  +  LA LE+  L 
Sbjct: 175 MPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 201 DNELQ 205
             E +
Sbjct: 234 LGEFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  109 bits (274), Expect = 5e-28
 Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 7/186 (3%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
               ++S   L         +   LQ L+LS   +      A      L  + L GN + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG-IPSALSKC 143
                     SSLQ L      L+      I  +L  L+ ++++ N+     +P   S  
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 144 TYLQILGLSFNDFSGAIPKEIGNVTKLK----ELYLVRNRLQGEIPRELSNLAELELMSL 199
           T L+ L LS N        ++  + ++      L L  N +    P     +  L  ++L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTL 207

Query: 200 FDNELQ 205
            +N   
Sbjct: 208 RNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  107 bits (269), Expect = 2e-27
 Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 5/175 (2%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
             +    LN    IP  L    S ++L+LSFN L      + F    L+ +DL   ++  
Sbjct: 10  ITYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
                  + S L  L L+ N +         S L  L+ +   +          +     
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 146 LQILGLSFNDF-SGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSL 199
           L+ L ++ N   S  +P+   N+T L+ L L  N++Q     +L  L ++ L++L
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.9 bits (239), Expect = 3e-23
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 5/170 (2%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLS 84
              ++S  +           LSSL+ L ++ N    +     F     L ++DL   QL 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKC- 143
              P+   + SSLQ L++S+N             L  L+ +  S N         L    
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542

Query: 144 TYLQILGLSFNDFSGAIPKE--IGNVTKLKELYLVRNRLQGEIPRELSNL 191
           + L  L L+ NDF+     +  +  +   ++L +   R++   P +   +
Sbjct: 543 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.8 bits (218), Expect = 1e-20
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 16/182 (8%)

Query: 36  TGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYV----DLRGNQLSGAFPSFI 91
           +  +P    NL++L+ L+LS N++     +   + H +  +    DL  N ++       
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGA 196

Query: 92  FNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG------IPSALSKCTY 145
           F +  L  L L  N  S  +       L  LE   L    F           SAL     
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 146 LQILGLSFN---DFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
           L I          +   I      +T +    LV   ++       S     + + L + 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNC 314

Query: 203 EL 204
           + 
Sbjct: 315 KF 316

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.6 bits (215), Expect = 4e-20
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 4/130 (3%)

Query: 76  VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG 135
                       P  +    S ++LDLS+N L      +   + P L+ + LS+      
Sbjct: 12  YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTI 67

Query: 136 IPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELE 195
              A    ++L  L L+ N            ++ L++L  V   L       + +L  L+
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 196 LMSLFDNELQ 205
            +++  N +Q
Sbjct: 128 ELNVAHNLIQ 137

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.3 bits (170), Expect = 4e-14
 Identities = 32/210 (15%), Positives = 57/210 (27%), Gaps = 29/210 (13%)

Query: 24  RVTVFNVSGLNLTGTIPSQ-LGNLSSLQSLNLSFNRLSGSIPSATFITHTLK-------- 74
           R+    +     +  +    +  L+ L+   L             F    L+        
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 75  YVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF- 132
              L            +FN  +++    L    +      +       LE ++     F 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 133 ---------------HGGIPSALSKCTYLQILGLSFND--FSGAIPKEIGNVTKLKELYL 175
                           GG   +      L+ L LS N   F G   +     T LK L L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 176 VRNRLQGEIPRELSNLAELELMSLFDNELQ 205
             N +   +      L +LE +    + L+
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 409

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 12/125 (9%)

Query: 24  RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQL 83
            +T  ++S   L    P+   +LSSLQ LN+S N             ++L+ +D   N +
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 84  SGAFPSFIFN-KSSLQDLDLSYNALSGEIPANICSNLPFLEYIS------LSQNMFHGGI 136
             +    + +  SSL  L+L+ N  +       C +  FL++I       +         
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACT-----CEHQSFLQWIKDQRQLLVEVERMECAT 585

Query: 137 PSALS 141
           PS   
Sbjct: 586 PSDKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATF-ITHTLKYVDLRGN 81
             + V N+S  N           L+SLQ L+ S N +  S          +L +++L  N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 82  QLSGAFPS--FIFNKSSLQDLDLSYNALSGEIPAN 114
             +       F+      + L +    +    P++
Sbjct: 554 DFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  116 bits (292), Expect = 2e-30
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 3/182 (1%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
           +TV N++   L     +     S L SL++ FN +S   P        LK ++L+ N+LS
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
                     ++L +L L  N++   I  N       L  + LS N           +  
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 145 YLQILGLSFNDFSGAIPKEIGNV--TKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
            LQ L LS N       +E+     + LK+L L  N+++   P     +  L  + L + 
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 203 EL 204
           +L
Sbjct: 206 QL 207

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (289), Expect = 6e-30
 Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 6/188 (3%)

Query: 21  HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITH--TLKYVDL 78
               +   ++S   L+ T       L +LQ L LS N++         I    +LK ++L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 79  RGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICS--NLPFLEYISLSQNMFHGGI 136
             NQ+    P        L  L L+   L   +   +C       +  +SLS +      
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 137 PSALS--KCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAEL 194
            +     K T L +L LS+N+ +         + +L+  +L  N +Q      L  L  +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 195 ELMSLFDN 202
             ++L  +
Sbjct: 299 RYLNLKRS 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  111 bits (280), Expect = 8e-29
 Identities = 42/185 (22%), Positives = 67/185 (36%), Gaps = 6/185 (3%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
           T  +V    ++   P     L  L+ LNL  N LS            L  + L  N +  
Sbjct: 52  TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALS--KC 143
              +    + +L  LDLS+N LS          L  L+ + LS N         L     
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 144 TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELS---NLAELELMSLF 200
           + L+ L LS N      P     + +L  L+L   +L   +  +L        +  +SL 
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 201 DNELQ 205
           +++L 
Sbjct: 231 NSQLS 235

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  111 bits (279), Expect = 1e-28
 Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 6/189 (3%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLS-GSIPSATF---ITHTLKYVDL 78
             +   N+   ++ G   +    L +L+ L+LS +  S  ++ + TF       L  ++L
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 79  RGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS 138
             N++S            L+ LDL  N +  E+       L  +  I LS N +     +
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

Query: 139 ALSKCTYLQILGLSFNDFSG--AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELEL 196
           + +    LQ L L         + P     +  L  L L  N +       L  L +LE+
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 197 MSLFDNELQ 205
           + L  N L 
Sbjct: 509 LDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (274), Expect = 5e-28
 Identities = 42/190 (22%), Positives = 69/190 (36%), Gaps = 8/190 (4%)

Query: 22  SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGN 81
               T  ++S  +L          L  L+ LN+  N + G   +       LKY+ L  +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 82  QLS-GAFPSFIF---NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP 137
             S     +  F     S L  L+L+ N +S  I ++  S L  LE + L  N     + 
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 138 -SALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG--EIPRELSNLAEL 194
                    +  + LS+N +          V  L+ L L R  L+     P     L  L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 195 ELMSLFDNEL 204
            ++ L +N +
Sbjct: 483 TILDLSNNNI 492

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (272), Expect = 1e-27
 Identities = 35/196 (17%), Positives = 74/196 (37%), Gaps = 13/196 (6%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNL---------SFNRLSGSIPSATFITHTL 73
            ++  F +   N+       L  L +++ LNL         S   L      +      L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 74  KYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALS-GEIPANICSNLPF--LEYISLSQN 130
           +++++  N + G   +      +L+ L LS +  S   +      +L    L  ++L++N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 131 MFHGGIPSALSKCTYLQILGLSFNDFSGAIP-KEIGNVTKLKELYLVRNRLQGEIPRELS 189
                   A S   +L++L L  N+    +  +E   +  + E+YL  N+         +
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451

Query: 190 NLAELELMSLFDNELQ 205
            +  L+ + L    L+
Sbjct: 452 LVPSLQRLMLRRVALK 467

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  104 bits (262), Expect = 2e-26
 Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 10/193 (5%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT--LKYVDLRG 80
             +    +S         +    + SLQ L L    L     S +       L  +DL  
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 81  NQLSGAFPSFIFNKSSLQDLDLSYNALS-------GEIPANICSNLPFLEYISLSQNMFH 133
           N ++      +     L+ LDL +N L+          P      L  L  ++L  N F 
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 134 GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELS-NLA 192
                       L+I+ L  N+ +        N   LK L L +N +     +       
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 193 ELELMSLFDNELQ 205
            L  + +  N   
Sbjct: 610 NLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (260), Expect = 4e-26
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 6/182 (3%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
            V + S L LT  +P  L   +++  LNL+ N+L     +       L  +D+  N +S 
Sbjct: 7   EVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
             P        L+ L+L +N LS  +     +    L  + L  N       +   K   
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLA--ELELMSLFDNE 203
           L  L LS N  S         +  L+EL L  N++Q     EL   A   L+ + L  N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 204 LQ 205
           ++
Sbjct: 183 IK 184

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (259), Expect = 6e-26
 Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 17/201 (8%)

Query: 21  HSHRVTVFNVSGLNLTGTIPS--QLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDL 78
               +    +S   +         +   SSL+ L LS N++    P        L  + L
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 79  RGNQLSGAFPSFIF---NKSSLQDLDLSYNALSGEIPANICSNLPF--LEYISLSQNMFH 133
              QL  +    +      +S+++L LS + LS          L +  L  + LS N  +
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 134 GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN---------RLQGEI 184
                + +    L+   L +N+        +  +  ++ L L R+          L    
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 185 PRELSNLAELELMSLFDNELQ 205
                 L  LE +++ DN++ 
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIP 342

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (255), Expect = 2e-25
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 4/158 (2%)

Query: 48  SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNAL 107
           S +  + S  +L+  +P    +   +  ++L  NQL     +     S L  LD+ +N +
Sbjct: 5   SHEVADCSHLKLT-QVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 108 SGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNV 167
           S  +   +C  LP L+ ++L  N          + CT L  L L  N             
Sbjct: 62  SK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 168 TKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
             L  L L  N L          L  L+ + L +N++Q
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.9 bits (234), Expect = 1e-22
 Identities = 38/158 (24%), Positives = 57/158 (36%), Gaps = 10/158 (6%)

Query: 37  GTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS--------GAFP 88
            + PS    L +L  L+LS N ++            L+ +DL+ N L+        G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 89  SFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQI 148
            F+   S L  L+L  N     IP  +  +L  L+ I L  N  +    S  +    L+ 
Sbjct: 530 YFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 149 LGLSFNDFSGAIPKEIGNV-TKLKELYLVRNRLQGEIP 185
           L L  N  +    K  G     L EL +  N       
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 26/110 (23%), Positives = 36/110 (32%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP 88
            +      G     L  LS L  LNL  N               LK +DL  N L+    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 89  SFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS 138
           S   N+ SL+ L+L  N ++             L  + +  N F     S
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 21  HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSA-TFITHTLKYVDLR 79
               + + ++   NL     S   N  SL+SLNL  N ++             L  +D+R
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 80  GNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS 128
            N       S  +  + + +   +   LS      +C+  P      + 
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHY---LCNTPPHYHGFPVR 663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  115 bits (290), Expect = 3e-30
 Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 33/232 (14%)

Query: 3   NWNTSSPVCNW---TGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRL 59
           NWN +  +  W    GV  D ++ RVT  +++G    G +P  +G L+ L+ L+   +  
Sbjct: 301 NWNFNKELDMWGDQPGVDLD-NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359

Query: 60  SGSIPSATFITHTLKYVDLRGNQLSGAFPS-FIFNKSSLQDLDLSYNALSGEIPANICSN 118
           + S         T    + R +++   +   F+     L   DL  +A++          
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN---PEMKP 416

Query: 119 LPFLEYISLSQNMFHG------GIPSALSKCTYLQILGLSFNDFSG-------------- 158
           +     ISL              I  A+ + T LQI+  + + F+               
Sbjct: 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476

Query: 159 -----AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
                       N+  L ++ L       ++P  L +L EL+ +++  N   
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  103 bits (259), Expect = 5e-26
 Identities = 28/189 (14%), Positives = 54/189 (28%), Gaps = 16/189 (8%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG--- 85
           N               NL  L  + L        +P   +    L+ +++  N+      
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532

Query: 86  ------AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSA 139
                            +Q   + YN L     +     +  L  +    N        A
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEA 590

Query: 140 LSKCTYLQILGLSFNDFSGAIPKEIGNVTK-LKELYLVRNRLQGEIPR--ELSNLAELEL 196
                 L  L L +N     IP++    T  ++ L    N+L+  IP      ++  +  
Sbjct: 591 FGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648

Query: 197 MSLFDNELQ 205
           +    N++ 
Sbjct: 649 VDFSYNKIG 657

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (254), Expect = 2e-25
 Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 18/183 (9%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS---- 84
            +       +         +  ++ LS+N +             +  + L  N ++    
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 85  ---GAFPSFIFNKSSLQDLDLSYNALSGEIPANI-CSNLPFLEYISLSQNMFHGGIPSAL 140
                      N   L  +DL +N L+  +  +   + LP+L  + +S N F    P+  
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQP 772

Query: 141 SKCTYLQILGLSF------NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAE 193
              + L+  G+        N      P  I     L +L +  N ++ ++  +    L  
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYI 831

Query: 194 LEL 196
           L++
Sbjct: 832 LDI 834

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 97.6 bits (243), Expect = 7e-24
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 21/197 (10%)

Query: 24  RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT--------LKY 75
             +   +S   +           S + ++ LS N ++ SIP  +             L  
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTT 732

Query: 76  VDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQ----- 129
           +DLR N+L+     F       L ++D+SYN  S   P     N   L+   +       
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL-NSSQLKAFGIRHQRDAE 790

Query: 130 -NMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPREL 188
            N      P+ ++ C  L  L +  ND    + +++    +L  L +  N         +
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLT--PQLYILDIADNPNISIDVTSV 847

Query: 189 SNLAELELMSLFDNELQ 205
               E  +  L  ++ Q
Sbjct: 848 CPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.8 bits (233), Expect = 2e-22
 Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 17/194 (8%)

Query: 26  TVFNVSGLNLTGTIPSQ-LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
            +F +   NL     S  L  +  L  L+   N++   + +       L  + L  NQ+ 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVK-LTDLKLDYNQIE 608

Query: 85  GAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALS-- 141
              P         ++ L  S+N L          ++  +  +  S N       +     
Sbjct: 609 E-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 142 ---KCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ-------GEIPRELSNL 191
              K      + LS+N+      +     + +  + L  N +                N 
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 192 AELELMSLFDNELQ 205
             L  + L  N+L 
Sbjct: 728 YLLTTIDLRFNKLT 741

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 11/119 (9%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSF------NRLSGSIPSATFITHTLKYVDLR 79
           +  +VS    + + P+Q  N S L++  +        NR+    P+      +L  + + 
Sbjct: 756 SNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 80  GNQLSGAFPSFIFNKSSLQDLDLSYNAL-SGEIPANICSNLPFLEYISLSQNMFHGGIP 137
            N +       +     L  LD++ N   S ++ +        +  +   +     G  
Sbjct: 815 SNDIRK-VDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (284), Expect = 2e-29
 Identities = 30/197 (15%), Positives = 69/197 (35%), Gaps = 21/197 (10%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRL--------SGSIPSATFITHTLKYVD 77
           T   V        +P+ L  L  +Q +N++ NR              +   +   ++ + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 78  LRGNQL-SGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI 136
           +  N L +    + +     L  L+  YN L G++PA    +   L  ++L+ N      
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FG-SEIKLASLNLAYNQITEIP 369

Query: 137 PSALSKCTYLQILGLSFNDFSGAIPK--EIGNVTKLKELYLVRNRLQG-------EIPRE 187
            +       ++ L  + N     IP   +  +V+ +  +    N +          +   
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 188 LSNLAELELMSLFDNEL 204
                 +  ++L +N++
Sbjct: 429 PFKGINVSSINLSNNQI 445

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  109 bits (274), Expect = 5e-28
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 15/184 (8%)

Query: 36  TGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKS 95
           T  + + L  +  L  L   +N+L G +P+       L  ++L  NQ++    +F     
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK-LASLNLAYNQITEIPANFCGFTE 377

Query: 96  SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG-------GIPSALSKCTYLQI 148
            +++L  ++N L          ++  +  I  S N            +     K   +  
Sbjct: 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

Query: 149 LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG-------EIPRELSNLAELELMSLFD 201
           + LS N  S    +     + L  + L+ N L         +      N   L  + L  
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 202 NELQ 205
           N+L 
Sbjct: 498 NKLT 501

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (270), Expect = 2e-27
 Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 26/203 (12%)

Query: 26  TVFNVSGLNLTGTIPS--QLGNLSSLQSLNLSFNRLSG-------SIPSATFITHTLKYV 76
              + +   L   IP+     ++S + +++ S+N +          +    F    +  +
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 77  DLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANIC-------SNLPFLEYISLSQ 129
           +L  NQ+S          S L  ++L  N L+  IP N          N   L  I L  
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 130 NMFHGGIPS-ALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLV------RNRLQG 182
           N           +   YL  + LS+N FS   P +  N + LK   +        NR   
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 183 EIPRELSNLAELELMSLFDNELQ 205
           E P  ++    L  + +  N+++
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIR 579

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (268), Expect = 3e-27
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 16/177 (9%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG-------A 86
                +        ++ S+NLS N++S            L  ++L GN L+         
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 87  FPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYL 146
                 N   L  +DL +N L+        + LP+L  I LS N F    P+     + L
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTL 538

Query: 147 QILGL------SFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELEL 196
           +  G+        N      P+ I     L +L +  N ++  +  +   N++ L++
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNISVLDI 594

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (268), Expect = 3e-27
 Identities = 39/193 (20%), Positives = 64/193 (33%), Gaps = 17/193 (8%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSG-------SIPSATFITHTLKYVDL 78
           +  N+S   ++          S L S+NL  N L+                T+ L  +DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 79  RGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICS-----NLPFLEYISLSQNMF 132
           R N+L+     F       L  +DLSYN+ S   P    +                 N  
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 133 HGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLA 192
               P  ++ C  L  L +  ND    + ++I     +  L +  N         +    
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISIDLSYVCPYI 611

Query: 193 ELELMSLFDNELQ 205
           E  +  LF ++ Q
Sbjct: 612 EAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (254), Expect = 3e-25
 Identities = 17/186 (9%), Positives = 53/186 (28%), Gaps = 17/186 (9%)

Query: 29  NVSGLNLTGTIPSQLG--NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGA 86
               ++   T        + S L    ++ +    SI  ++ IT     +    N ++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 87  FPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYL 146
               +   + L+   +  +    E            E  +      +            L
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDL 251

Query: 147 QILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL--------QGEIPRELSNLAELELMS 198
             + +        +P  +  + +++ + +  NR           +   +     +++++ 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 199 LFDNEL 204
           +  N L
Sbjct: 312 IGYNNL 317

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 23/176 (13%), Positives = 54/176 (30%), Gaps = 10/176 (5%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
           +  G       N +  + L++   +   S+ S       +  + L G   SG  P  I  
Sbjct: 48  SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGR----VTGLSLEGFGASGRVPDAIGQ 103

Query: 94  KSSLQDLDLSYNALSGEIPANI---CSNLPFLEYISLSQNMFHGGIPSALSKCTY--LQI 148
            + L+ L L  +              S     E     +  +         +  +  L  
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 149 LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
             ++ +    +I K      K  ++  + N +   + + +  L +L    + ++  
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPF 218

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 4/103 (3%)

Query: 107 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSG----AIPK 162
           + G  P    ++   +  +SL      G +P A+ + T L++L L  +          PK
Sbjct: 68  MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPK 127

Query: 163 EIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            I      ++   +R   Q             +L+    N   
Sbjct: 128 GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  110 bits (277), Expect = 2e-28
 Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 4/185 (2%)

Query: 24  RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQL 83
            V   N+          +     S LQ L+L+   LS  +PS      TLK + L  N+ 
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313

Query: 84  SGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH--GGIPSALS 141
                    N  SL  L +  N    E+      NL  L  + LS +           L 
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 142 KCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLF 200
             ++LQ L LS+N+      +      +L+ L L   RL+ +  +    NL  L++++L 
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 201 DNELQ 205
            + L 
Sbjct: 434 HSLLD 438

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (258), Expect = 6e-26
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 6/177 (3%)

Query: 33  LNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF 92
           +  +     QL NLS LQSLNLS+N        A      L+ +DL   +L        F
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 93  NK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI---PSALSKCTYLQI 148
                L+ L+LS++ L       +   LP L++++L  N F  G     ++L     L+I
Sbjct: 422 QNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 149 LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           L LSF D S        ++  +  + L  NRL       LS+L  + L +L  N + 
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNHIS 536

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.9 bits (247), Expect = 2e-24
 Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 6/189 (3%)

Query: 23  HRVTVFNVSGLNLTGTIPSQ-LGNLSSLQSLNLSFNRLSGSIPSATFITHT--LKYVDLR 79
             +T  ++ G      + +  L NL +L+ L+LS + +  S      + +   L+ ++L 
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 80  GNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSA 139
            N+              L+ LDL++  L  +   +   NL  L+ ++LS ++        
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 140 LSKCTYLQILGLSFNDFSGAIPKEIG---NVTKLKELYLVRNRLQGEIPRELSNLAELEL 196
                 LQ L L  N F     ++      + +L+ L L    L        ++L  +  
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 197 MSLFDNELQ 205
           + L  N L 
Sbjct: 505 VDLSHNRLT 513

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.5 bits (246), Expect = 3e-24
 Identities = 42/181 (23%), Positives = 66/181 (36%), Gaps = 6/181 (3%)

Query: 20  VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDL 78
           +       +N   L L   IP  L   +S + L  SFN L  +I + TF     L ++DL
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDL 64

Query: 79  RGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS 138
              Q+         ++  L  L L+ N L   +     S    L+++   Q         
Sbjct: 65  TRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 139 ALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMS 198
            L     L+ L L  N  S     +     KLK L    N +      ++S+L +   +S
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 199 L 199
           L
Sbjct: 184 L 184

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.2 bits (245), Expect = 4e-24
 Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 4/183 (2%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLS 84
              N+S                 L+ L+L+F RL      + F   H LK ++L  + L 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSG--EIPANICSNLPFLEYISLSQNMFHGGIPSALSK 142
            +         +LQ L+L  N          N    L  LE + LS          A + 
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
              +  + LS N  + +  + + ++  +  L L  N +   +P  L  L++   ++L  N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 203 ELQ 205
            L 
Sbjct: 558 PLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.3 bits (209), Expect = 3e-19
 Identities = 32/214 (14%), Positives = 71/214 (33%), Gaps = 31/214 (14%)

Query: 21  HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSA-TFITH-TLKYVDL 78
           +   +    +   +++     +      L+ L+   N +        + +   T   ++L
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 79  RGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSN-------------------- 118
            GN ++G      F+ +  Q L+         I   + ++                    
Sbjct: 187 NGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 119 -------LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLK 171
                     +E I+L ++ F     +     + LQ L L+    S  +P  +  ++ LK
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304

Query: 172 ELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           +L L  N+ +       SN   L  +S+  N  +
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.3 bits (209), Expect = 3e-19
 Identities = 35/208 (16%), Positives = 62/208 (29%), Gaps = 29/208 (13%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
                    ++      L N  +L+SL L  N +S       F T  LK +D + N +  
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

Query: 86  -------------------------AFPSFIFNKSSLQDLDLSYNALSGEIPANIC-SNL 119
                                          F+ +  Q L+         I   +  S +
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

Query: 120 PFLEYISLSQNMFHGGIPSALSKC--TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVR 177
             L   +          P+         ++ + L  + F           + L+EL L  
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

Query: 178 NRLQGEIPRELSNLAELELMSLFDNELQ 205
             L  E+P  L  L+ L+ + L  N+ +
Sbjct: 288 THLS-ELPSGLVGLSTLKKLVLSANKFE 314

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 5e-16
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 5/139 (3%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT---LKYVDLR 79
           H + V N+S   L  +       L +LQ LNL  N         T    T   L+ + L 
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 80  GNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSA 139
              LS        +   +  +DLS+N L+        S+L  + Y++L+ N     +PS 
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI-YLNLASNHISIILPSL 542

Query: 140 LSKCTYLQILGLSFNDFSG 158
           L   +  + + L  N    
Sbjct: 543 LPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 24  RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQL 83
           R+ +  +S  +L+        +L  +  ++LS NRL+ S            Y++L  N +
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIYLNLASNHI 535

Query: 84  SGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKC 143
           S   PS +   S  + ++L  N L        CSN+ FLE+   +         +     
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDC-----TCSNIYFLEWYKENMQKLEDTEDTLCENP 590

Query: 144 TYLQILGLSFNDFS 157
             L+ + LS    S
Sbjct: 591 PLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 4/106 (3%)

Query: 100 LDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA 159
            +     L+ EIP  +       E +  S N+      +  S+   L  L L+       
Sbjct: 17  YNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 160 IPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
                 +  +L  L L  N L       LS    L+ +      + 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (266), Expect = 6e-27
 Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 1/172 (0%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLRGNQLSGAFPSFIF 92
           N    + +    L  LQ L+   + L      + F++   L Y+D+        F     
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 93  NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLS 152
             +SL  L ++ N+      +N+ +N   L ++ LS+                LQ+L +S
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 153 FNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            N+           +  L  L    NR++            L   +L +N +
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.3 bits (240), Expect = 2e-23
 Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 4/175 (2%)

Query: 33  LNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF 92
           L+ +G         +SL+ L+LSFN     + +       L+++D + + L        F
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 93  NK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS-ALSKCTYLQILG 150
                L  LD+SY          I   L  L  + ++ N F     S   +  T L  L 
Sbjct: 421 LSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           LS              + +L+ L +  N L        + L  L  +    N ++
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 89.7 bits (223), Expect = 4e-21
 Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 37  GTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSS 96
           G++   +  + ++ +      +LS  +P    I  + K +DL  N L         N S 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 97  LQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF 156
           LQ LDLS   +   I       L  L  + L+ N      P + S  T L+ L       
Sbjct: 58  LQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 157 SGAIPKEIGNVTKLKELYLVRNRLQG-EIPRELSNLAELELMSLFDNELQ 205
           +      IG +  LK+L +  N +   ++P   SNL  L  + L  N +Q
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.8 bits (218), Expect = 2e-20
 Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 6/185 (3%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
              ++S   +          L  L +L L+ N +    P +     +L+ +     +L+ 
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALS---- 141
                I    +L+ L++++N +         SNL  L ++ LS N       + L     
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 142 KCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLF 200
                  L +S N     I  +     KL EL L  N     I +  L NLA L +  L 
Sbjct: 179 NPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 201 DNELQ 205
             E +
Sbjct: 238 LGEFK 242

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.7 bits (210), Expect = 2e-19
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 2/133 (1%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLRGNQLS 84
              ++S  N           L+SL +L ++ N    +  S  F     L ++DL   QL 
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
                       LQ L++S+N L   + ++  + L  L  +  S N              
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 145 YLQILGLSFNDFS 157
            L    L+ N  +
Sbjct: 546 SLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 28/198 (14%), Positives = 66/198 (33%), Gaps = 16/198 (8%)

Query: 21  HSHRVTVFNVSGLNLTG-TIPSQLGNLSSLQSLNLSFNRLSGSIPSA----TFITHTLKY 75
               +   NV+   +    +P+   NL++L  ++LS+N +     +              
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 76  VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG 135
           +D+  N +        F    L +L L  N  S  I      NL  L    L    F   
Sbjct: 186 LDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 136 IPSALSKCTYLQILG--------LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE 187
               + + + ++ L         L++ +       +   +  +  + L    +  +   +
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLED 302

Query: 188 LSNLAELELMSLFDNELQ 205
           +    + + +S+   +L+
Sbjct: 303 VPKHFKWQSLSIIRCQLK 320

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 46/218 (21%), Positives = 74/218 (33%), Gaps = 31/218 (14%)

Query: 14  TGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTL 73
             +       +    ++    L    P+   +L  L+SL L+ N+ S S         +L
Sbjct: 298 KYLEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTLTMNKGSISFKKVAL--PSL 352

Query: 74  KYVDLRGNQLS--GAFPSFIFNKSSLQDLDLSYNA-----------------------LS 108
            Y+DL  N LS  G         +SL+ LDLS+N                        L 
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK 412

Query: 109 GEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNV 167
                +   +L  L Y+ +S               T L  L ++ N F       +  N 
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472

Query: 168 TKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           T L  L L + +L+         L  L+L+++  N L 
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.4 bits (152), Expect = 8e-12
 Identities = 33/206 (16%), Positives = 58/206 (28%), Gaps = 32/206 (15%)

Query: 29  NVSGLNLTGTIPS-QLGNLSSLQSLNLSFNRLSGSIPSATFITHTLK--------YVDLR 79
            + G   +  I    L NL+ L    L             F    ++           L 
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 80  GNQLSGAFPSFIFNKSSLQDLDLSYNALSG------------------EIPANICSNLPF 121
                          +++  + L+  ++                    ++      +LPF
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329

Query: 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS--GAIPKEIGNVTKLKELYLVRNR 179
           L+ ++L+ N   G I         L  L LS N  S  G           L+ L L  N 
Sbjct: 330 LKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 180 LQGEIPRELSNLAELELMSLFDNELQ 205
               +      L EL+ +    + L+
Sbjct: 388 AI-IMSANFMGLEELQHLDFQHSTLK 412

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ 82
           HR+ + N+S  NL     S    L SL +L+ SFNR+  S         +L + +L  N 
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

Query: 83  LS 84
           ++
Sbjct: 557 VA 558

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.6 bits (228), Expect = 2e-22
 Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 7/173 (4%)

Query: 33  LNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF 92
           L+L      +L    S+++L+ + N +S  +  +       K + L  N+++        
Sbjct: 85  LDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEG 141

Query: 93  NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLS 152
            +S +Q LDL  N +     A + ++   LE+++L  N  +  +         L+ L LS
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLS 199

Query: 153 FNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            N  +  +  E  +   +  + L  N+L   I + L     LE   L  N   
Sbjct: 200 SNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 7e-20
 Identities = 37/187 (19%), Positives = 77/187 (41%), Gaps = 14/187 (7%)

Query: 21  HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLR 79
           + +R  +  V+  +L   + S   +  +++ L+LS N LS  I +A       L+ ++L 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 80  GNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSA 139
            N L       + + S+L+ LDL+ N +  E+        P +E +  + N       S 
Sbjct: 67  SNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSCSR 118

Query: 140 LSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG-EIPRELSNLAELELMS 198
                  + + L+ N  +     + G  ++++ L L  N +         ++   LE ++
Sbjct: 119 GQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 199 LFDNELQ 205
           L  N + 
Sbjct: 176 LQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 24/165 (14%), Positives = 59/165 (35%), Gaps = 9/165 (5%)

Query: 43  LGNLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLRGNQLSG-AFPSFIFNKSSLQDL 100
                  +++ L+ N+++  +          ++Y+DL+ N++    F     +  +L+ L
Sbjct: 116 CSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI 160
           +L YN +  ++   +      L+ + LS N     +         +  + L  N     I
Sbjct: 175 NLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            K +     L+   L  N       R+        + ++    ++
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 6e-19
 Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 11/167 (6%)

Query: 39  IPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ 98
           I     N +  +   ++ + L  ++ S       +K +DL GN LS    + +   + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 99  DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSG 158
            L+LS N L  E       +L  L  + L+ N         L     ++ L  + N+ S 
Sbjct: 62  LLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 159 AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            +    G     K +YL  N++      +    + ++ + L  NE+ 
Sbjct: 113 RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
           A      N +  +   ++ ++L  +  A++  +   ++ + LS N       + L+  T 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           L++L LS N        ++ +++ L+ L L  N +Q     EL     +E +   +N + 
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 3/113 (2%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97
            +  Q+   + L++L+LS N+L+  +         + ++ LR N+L       +    +L
Sbjct: 183 DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239

Query: 98  QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILG 150
           +  DL  N        +  S    ++ ++        G          L   G
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.2 bits (232), Expect = 2e-22
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 5/175 (2%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLS--GSIPSATFITHTLKYVDLRGNQLSGAFPSFI 91
           N  G   S++ +L SL+ L+LS N LS  G    + F T +LKY+DL  N +     S  
Sbjct: 335 NKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 392

Query: 92  FNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGL 151
                L+ LD  ++ L      ++  +L  L Y+ +S            +  + L++L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 152 SFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           + N F      +I   +  L  L L + +L+   P   ++L+ L+++++  N+L+
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.4 bits (209), Expect = 2e-19
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 1/150 (0%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAFPSFIFNKSS 96
           T+ S    L  L+ L+   + L      + F+    L Y+D+       AF       SS
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 97  LQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF 156
           L+ L ++ N+       +I + L  L ++ LSQ       P+A +  + LQ+L ++ N  
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 157 SGAIPKEIGNVTKLKELYLVRNRLQGEIPR 186
                     +T L++++L  N      PR
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.0 bits (208), Expect = 3e-19
 Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 7/176 (3%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLS 84
             +    LN    IP  L    S ++L+LSFN L   + S +F +   L+ +DL   ++ 
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
                   + S L  L L+ N +   +     S L  L+ +   +          +    
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 145 YLQILGLSFNDF-SGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSL 199
            L+ L ++ N   S  +P+   N+T L+ L L  N++Q     +L  L ++ L++L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.1 bits (203), Expect = 2e-18
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 8/186 (4%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLS 84
            V ++S   +         +LS L +L L+ N +  S+    F    +L+ +      L+
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA 113

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
                 I +  +L++L++++N +         SNL  LE++ LS N       + L    
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 145 YLQI----LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSL 199
            + +    L LS N  +  I        +L +L L  N     + +  +  LA LE+  L
Sbjct: 174 QMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 200 FDNELQ 205
              E +
Sbjct: 233 VLGEFR 238

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 11/188 (5%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQL 83
               ++S   L         +   LQ L+LS   +  +I    + + + L  + L GN +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 84  SGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF-HGGIPSALS 141
                   F+  SSLQ L      L+  +      +L  L+ ++++ N+     +P   S
Sbjct: 89  QS-LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 142 KCTYLQILGLSFNDFSGAIPKEIGNVTKLK----ELYLVRNRLQGEIPRELSNLAELELM 197
             T L+ L LS N        ++  + ++      L L  N +   I         L  +
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKL 205

Query: 198 SLFDNELQ 205
           +L +N   
Sbjct: 206 TLRNNFDS 213

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.1 bits (185), Expect = 4e-16
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG-AFPSFIFNK-SSLQDLDL 102
            L SL+ L  + N+   +  S   +   L+++DL  N LS     S      +SL+ LDL
Sbjct: 323 KLKSLKRLTFTSNKGG-NAFSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP-SALSKCTYLQILGLSFNDFSGAIP 161
           S+N +   + +N    L  LE++    +        S       L  L +S      A  
Sbjct: 381 SFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 162 KEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNELQ 205
                ++ L+ L +  N  Q     +  + L  L  + L   +L+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 4/130 (3%)

Query: 76  VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG 135
                       P  +    S ++LDLS+N L   + +    + P L+ + LS+      
Sbjct: 12  YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 136 IPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELE 195
              A    ++L  L L+ N            ++ L++L  V   L       + +L  L+
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 196 LMSLFDNELQ 205
            +++  N +Q
Sbjct: 128 ELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 2/113 (1%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAF 87
           ++S  +           LSSL+ L ++ N    +     F     L ++DL   QL    
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 88  PSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL 140
           P+   + SSLQ L+++ N L   +P  I   L  L+ I L  N +    P   
Sbjct: 487 PTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 9e-13
 Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 17/182 (9%)

Query: 39  IPSQLGNLSSLQSLNLSFNRLSGSIPSATF-----ITHTLKYVDLRGNQLSGAFPSFIFN 93
           +P    NL++L+ L+LS N++  SI          +      +DL  N ++       F 
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK 198

Query: 94  KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI------PSALSKCTYLQ 147
           +  L  L L  N  S  +       L  LE   L    F           SAL     L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 148 ILGLSFN---DFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNE 203
           I          +   I      +T +    LV   ++             LEL++    +
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 204 LQ 205
             
Sbjct: 319 FP 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 3e-22
 Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 13/185 (7%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
               +  + L    P Q   LS LQ + +    L   +P        L+ + L  N L  
Sbjct: 84  VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR- 140

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICS--------NLPFLEYISLSQNMFHGGIP 137
           A P+ I + + L++L +       E+P  + S         L  L+ + L        +P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 138 SALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELM 197
           ++++    L+ L +  +  S A+   I ++ KL+EL L         P      A L+ +
Sbjct: 200 ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 198 SLFDN 202
            L D 
Sbjct: 259 ILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.2 bits (222), Expect = 1e-21
 Identities = 33/188 (17%), Positives = 70/188 (37%), Gaps = 13/188 (6%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPS---------ATFITHTLKYV 76
               ++   L   +P+ + +L+ L+ L++        +P                 L+ +
Sbjct: 130 ETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 77  DLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI 136
            L    +  + P+ I N  +L+ L +  + LS  +   I  +LP LE + L         
Sbjct: 189 RLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNY 245

Query: 137 PSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELEL 196
           P        L+ L L        +P +I  +T+L++L L        +P  ++ L    +
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 197 MSLFDNEL 204
           + +  +  
Sbjct: 306 ILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 4e-19
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 35/215 (16%)

Query: 21  HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT---------- 70
           HS         G          L       + + +    +    ++              
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 71  -----------HTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL 119
                           ++LR   L   FP   F  S LQ + +    L  E+P  +    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QF 126

Query: 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNV---------TKL 170
             LE ++L++N     +P++++    L+ L +        +P+ + +            L
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 171 KELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           + L L    ++  +P  ++NL  L+ + + ++ L 
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 26  TVFNVSGLNLTGTIPSQLGN---------LSSLQSLNLSFNRLSGSIPSATFITHTLKYV 76
              ++        +P  L +         L +LQSL L +  +  S+P++      LK +
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 77  DLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI 136
            +R + LS A    I +   L++LDL         P         L+ + L        +
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTL 269

Query: 137 PSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPREL 188
           P  + + T L+ L L        +P  I  +     + +  + LQ ++ +  
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH-LQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.0 bits (159), Expect = 8e-13
 Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 9/161 (5%)

Query: 43  LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102
             + S  ++L    +                   D      +        N ++ Q    
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETR 63

Query: 103 SYNALSGEIPANI-CSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIP 161
           +  AL       +  +  P    + L         P    + ++LQ + +        +P
Sbjct: 64  TGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 162 KEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
             +     L+ L L RN L+  +P  +++L  L  +S+   
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.1 bits (221), Expect = 5e-21
 Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 7/173 (4%)

Query: 33  LNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF 92
           L+L      +L    S+++L+ + N +S  +  +       K + L  N+++        
Sbjct: 85  LDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEG 141

Query: 93  NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLS 152
            +S +Q LDL  N +     A + ++   LE+++L  N  +  +   +     L+ L LS
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLS 199

Query: 153 FNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            N  +  +  E  +   +  + L  N+L   I + L     LE   L  N   
Sbjct: 200 SNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.8 bits (202), Expect = 2e-18
 Identities = 35/186 (18%), Positives = 75/186 (40%), Gaps = 12/186 (6%)

Query: 21  HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRG 80
           + +R  +  V+  +L   + S   +  +++ L+LS N LS    +       L+ ++L  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 81  NQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL 140
           N L       + + S+L+ LDL+ N +  E+        P +E +  + N       S  
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSCSRG 119

Query: 141 SKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG-EIPRELSNLAELELMSL 199
                 + + L+ N  +     + G  ++++ L L  N +         ++   LE ++L
Sbjct: 120 QG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 200 FDNELQ 205
             N + 
Sbjct: 177 QYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 80.3 bits (198), Expect = 6e-18
 Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 11/167 (6%)

Query: 39  IPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ 98
           I     N +  +   ++ + L  ++ S       +K +DL GN LS    + +   + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 99  DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSG 158
            L+LS N L  E       +L  L  + L+ N         L     ++ L  + N+ S 
Sbjct: 62  LLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 159 AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            +    G     K +YL  N++      +    + ++ + L  NE+ 
Sbjct: 113 RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 6e-12
 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
           A      N +  +   ++ ++L  +  A++  +   ++ + LS N       + L+  T 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
           L++L LS N     +   + +++ L+ L L  N +Q     EL     +E +   +N +
Sbjct: 60  LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 20/175 (11%), Positives = 43/175 (24%), Gaps = 9/175 (5%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97
            I   L    +L+  +L  N          F +   +   +    +           +  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 98  QDLDLSYNALSGEIPANICSNLPFLEYISLS----QNMFHGGIPSALSKCTYLQILGLSF 153
                       ++PA     L  L+    +    Q      +          + +    
Sbjct: 287 TLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELE---LMSLFDNELQ 205
             +   I +          L   +  L  ++       AEL+     ++   ELQ
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ 400

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 16/71 (22%), Positives = 28/71 (39%)

Query: 135 GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAEL 194
            I          +I  ++ +    A+     +   +KEL L  N L      +L+   +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 195 ELMSLFDNELQ 205
           EL++L  N L 
Sbjct: 61  ELLNLSSNVLY 71

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.5 bits (217), Expect = 2e-20
 Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 3/183 (1%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQL 83
           +   ++S   +T      L   ++LQ L L  +R++ +I    F +   L+++DL  N L
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHL 86

Query: 84  SGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP-SALSK 142
           S    S+    SSL+ L+L  N        ++  NL  L+ + +        I     + 
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
            T L  L +          + + ++  +  L L  +     +      L+ +  + L D 
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 203 ELQ 205
            L 
Sbjct: 207 NLA 209

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.6 bits (207), Expect = 4e-19
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 10/184 (5%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLS 84
            V +    + T +IPS L   ++++SL+LSFN+++  I          L+ + L+ ++++
Sbjct: 8   GVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN 63

Query: 85  GAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSK 142
                  F    SL+ LDLS N LS  + ++    L  L+Y++L  N +   G+ S    
Sbjct: 64  -TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 143 CTYLQILGLSFNDFSGAIPKE-IGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD 201
            T LQ L +   +    I +     +T L EL +    L+    + L ++ ++  ++L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 202 NELQ 205
           +E  
Sbjct: 182 SESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.4 bits (196), Expect = 1e-17
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 6/163 (3%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSY 104
           +  +    +      + SIPS   +T  +K +DL  N+++      +   ++LQ L L  
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 105 NALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSG-AIPKE 163
           + ++  I  +   +L  LE++ LS N       S     + L+ L L  N +    +   
Sbjct: 60  SRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 164 IGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNELQ 205
             N+T L+ L +       EI R   + L  L  + +    L+
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 11/177 (6%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQL 83
           +   ++    L   + +    L  ++ + +  +++   +P +      +L+++DL  N +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346

Query: 84  SGAF---PSFIFNKSSLQDLDLSYNALSG-EIPANICSNLPFLEYISLSQNMFHGGIPSA 139
              +    +      SLQ L LS N L   +    I   L  L  + +S+N FH  +P +
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405

Query: 140 LSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELEL 196
                 ++ L LS       +   I     L+ L +  N L       L  L EL +
Sbjct: 406 CQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQELYI 458

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.8 bits (184), Expect = 4e-16
 Identities = 35/179 (19%), Positives = 63/179 (35%), Gaps = 3/179 (1%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLS 84
            V  +    +         +L SL+ L+LS N LS S+ S+ F   + LKY++L GN   
Sbjct: 53  QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 85  GAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKC 143
               + +F   ++LQ L +       EI     + L  L  + +           +L   
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 144 TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
             +  L L  ++ +  +      ++ ++ L L    L       L        M     
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 8/165 (4%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSY 104
              +++ L++    L   + +   +   +K + +  +++     SF  +  SL+ LDLS 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 105 NALSGEIPAN--ICSNLPFLEYISLSQNMFH--GGIPSALSKCTYLQILGLSFNDFSGAI 160
           N +  E   N       P L+ + LSQN           L     L  L +S N F   +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM 402

Query: 161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           P       K++ L L    ++  +   +     LE++ + +N L 
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 13/161 (8%)

Query: 23  HRVTVFNVSGLNLT--GTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRG 80
             +    +S  +L         L  L +L SL++S N     +P +      +++++L  
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419

Query: 81  NQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL 140
             +     + I    +L+ LD+S N L      +    LP L+ + +S+N     +P A 
Sbjct: 420 TGIR-VVKTCIP--QTLEVLDVSNNNLD-----SFSLFLPRLQELYISRNKLKT-LPDA- 469

Query: 141 SKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181
           S    L ++ +S N            +T L++++L  N   
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 16/188 (8%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSI---PSATFITHTLKYVDLR 79
            +V    V    +     S   +L SL+ L+LS N +        +      +L+ + L 
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 80  GNQLS--GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP 137
            N L         +    +L  LD+S N     +P + C     + +++LS         
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS-CQWPEKMRFLNLSSTGIRVVKT 427

Query: 138 SALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELM 197
                   L++L +S N+   +       + +L+ELY+ RN+L+  +P + S    L +M
Sbjct: 428 CIPQT---LEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLP-DASLFPVLLVM 478

Query: 198 SLFDNELQ 205
            +  N+L+
Sbjct: 479 KISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 20/197 (10%), Positives = 56/197 (28%), Gaps = 17/197 (8%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
               +  L+L       L ++  +  L L  +  +  +     I  +++Y++LR   L+ 
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

Query: 86  AFPSFIFNKSSLQDLDLSYN-----------------ALSGEIPANICSNLPFLEYISLS 128
              S +        +                          E+      +         +
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270

Query: 129 QNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPREL 188
            +           +   ++ L +        +      + K+K + +  +++        
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330

Query: 189 SNLAELELMSLFDNELQ 205
            +L  LE + L +N + 
Sbjct: 331 QHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ 82
             + V +VS  NL  +       L  LQ L +S N+L  ++P A+     L  + +  NQ
Sbjct: 431 QTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLPDASLFPV-LLVMKISRNQ 484

Query: 83  LSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL 122
           L           +SLQ + L  N          C  + +L
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPWDCS-----CPRIDYL 519

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.7 bits (215), Expect = 3e-20
 Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 7/169 (4%)

Query: 40  PSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAFPSFIFNK-SSL 97
                 LS+L  L++S N++   +    F   + LK +++  N L        F+  +SL
Sbjct: 97  LGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSL 154

Query: 98  QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157
           + L L    L+  IP    S+L  L  + L     +     +  +   L++L +S   + 
Sbjct: 155 EQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNELQ 205
             +         L  L +    L   +P   + +L  L  ++L  N + 
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.8 bits (205), Expect = 6e-19
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDL 102
            L+SL+ L L    L+ SIP+      H L  + LR   ++ A   + F +   L+ L++
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEI 207

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPK 162
           S+      +  N    L  L  +S++          A+    YL+ L LS+N  S  I  
Sbjct: 208 SHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEG 265

Query: 163 EI-GNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNELQ 205
            +   + +L+E+ LV  +L   +       L  L ++++  N+L 
Sbjct: 266 SMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 7/169 (4%)

Query: 40  PSQLGNLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLRGNQLSGAFPSFIFNK-SSL 97
                +L +L+SL +  N L   I    F   ++L+ + L    L+ + P+   +    L
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGL 178

Query: 98  QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157
             L L +  ++  I       L  L+ + +S   +   +         L  L ++  + +
Sbjct: 179 IVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 158 GAIPKE-IGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            A+P   + ++  L+ L L  N +       L  L  L+ + L   +L 
Sbjct: 238 -AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
            V  +  LN+          L  L+ L +S      ++         L  + +    L+ 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237

Query: 86  AFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
           A P         L+ L+LSYN +S  I  ++   L  L+ I L         P A     
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 145 YLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQ 181
           YL++L +S N  +  + + +  +V  L+ L L  N L 
Sbjct: 297 YLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.0 bits (169), Expect = 4e-14
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 6/160 (3%)

Query: 47  SSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA 106
           +  +++     R   ++P    I    + +DL  N++         +   L++L+L+ N 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEG--IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 107 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGN 166
           +S  +     +NL  L  + L  N          +  + L  L +S N     +     +
Sbjct: 68  VS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 167 VTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNELQ 205
           +  LK L +  N L   I     S L  LE ++L    L 
Sbjct: 127 LYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 21  HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLR 79
           +   +T  +++  NLT      + +L  L+ LNLS+N +S +I  +       L+ + L 
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLV 280

Query: 80  GNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133
           G QL+     + F   + L+ L++S N L+  +  ++  ++  LE + L  N   
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 85.7 bits (213), Expect = 3e-20
 Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 43  LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102
           L +L+SL       N+++   P A      L  + +  N+++    S + N S L  L++
Sbjct: 195 LASLTSLHYFTAYVNQITDITPVANMTR--LNSLKIGNNKITD--LSPLANLSQLTWLEI 250

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPK 162
             N +S  I A    +L  L+ +++  N       S L+  + L  L L+ N       +
Sbjct: 251 GTNQISD-INA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME 305

Query: 163 EIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            IG +T L  L+L +N +    P  L++L++++     +  ++
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.5 bits (210), Expect = 8e-20
 Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 15/180 (8%)

Query: 29  NVSGLNLTG---TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
           +++ L + G        +  L++L+ LNL+ N+++   P +      L  + +  N+++ 
Sbjct: 45  SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNL--VKLTNLYIGTNKITD 102

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
              S + N ++L++L L+ + +S   P    +NL  +  ++L  N       S LS  T 
Sbjct: 103 --ISALQNLTNLRELYLNEDNISDISPL---ANLTKMYSLNLGANHNL-SDLSPLSNMTG 156

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           L  L ++ +      P  I N+T L  L L  N+++   P  L++L  L   + + N++ 
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 14/181 (7%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
                +   ++T  +      L S+  L ++  +++ SI    ++T+ L+Y++L GNQ++
Sbjct: 24  GIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQGIEYLTN-LEYLNLNGNQIT 79

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
               S + N   L +L +  N ++ +I A    NL  L  + L+++       S L+  T
Sbjct: 80  D--ISPLSNLVKLTNLYIGTNKIT-DISAL--QNLTNLRELYLNEDNISD--ISPLANLT 132

Query: 145 YLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            +  L L  N         + N+T L  L +  ++++   P  ++NL +L  +SL  N++
Sbjct: 133 KMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189

Query: 205 Q 205
           +
Sbjct: 190 E 190

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.0 bits (206), Expect = 3e-19
 Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 27/191 (14%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
           N   +  S L N++ L  L ++ +++    P A      L  + L  NQ+     S + +
Sbjct: 142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANL--TDLYSLSLNYNQIED--ISPLAS 197

Query: 94  KSSLQDLDLSYNALSGEIPANICSNL-------------------PFLEYISLSQNMFHG 134
            +SL       N ++   P    + L                     L ++ +  N    
Sbjct: 198 LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD 257

Query: 135 GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAEL 194
              +A+   T L++L +  N  S      + N+++L  L+L  N+L  E    +  L  L
Sbjct: 258 --INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 195 ELMSLFDNELQ 205
             + L  N + 
Sbjct: 314 TTLFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.4 bits (202), Expect = 1e-18
 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 12/168 (7%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97
           T  S L NL++L+ L L+ + +S   P A      +  ++L  N       S + N + L
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDISPLANL--TKMYSLNLGANHNLS-DLSPLSNMTGL 157

Query: 98  QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157
             L ++ + +    P    +NL  L  +SL+ N       S L+  T L       N  +
Sbjct: 158 NYLTVTESKVKDVTPI---ANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQIT 212

Query: 158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
              P  + N+T+L  L +  N++    P  L+NL++L  + +  N++ 
Sbjct: 213 DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.4 bits (194), Expect = 1e-17
 Identities = 33/165 (20%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100
               +L+      L    ++  +        ++  + + G +++      I   ++L+ L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQEEL--ESITKLVVAGEKVAS--IQGIEYLTNLEYL 71

Query: 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI 160
           +L+ N ++   P    SNL  L  + +  N       SAL   T L+ L L+ ++ S   
Sbjct: 72  NLNGNQITDISPL---SNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDIS 126

Query: 161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           P  + N+TK+  L L  N    ++   LSN+  L  +++ +++++
Sbjct: 127 P--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97
           +  S L NLS L SL L+ N+L             L  + L  N ++   P  + + S +
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 98  QDLDLSYNALS 108
              D +   + 
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
               ++   L       +G L++L +L LS N ++   P A+     +   D     + 
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL--SKMDSADFANQVIK 346

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.0 bits (213), Expect = 5e-20
 Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 11/177 (6%)

Query: 34  NLTGTIPSQ-LGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAFPSFI 91
           N   TI       L++L +L L  NRL+ +IP+  F+    LK + LR N +  + PS+ 
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

Query: 92  FNK-SSLQDLDLS-YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQIL 149
           FN+  SL+ LDL     LS  I       L  L Y++L+       IP  L+    L  L
Sbjct: 156 FNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDEL 212

Query: 150 GLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNELQ 205
            LS N  S   P     +  L++L+++++++Q  I R    NL  L  ++L  N L 
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.6 bits (207), Expect = 3e-19
 Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 8/187 (4%)

Query: 22  SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRG 80
           S    + N+    +     +   +L  L+ L LS N +  +I    F     L  ++L  
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 81  NQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS-A 139
           N+L+          S L++L L  N +   IP+   + +P L  + L +      I   A
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 140 LSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMS 198
               + L+ L L+  +    IP  +  + KL EL L  N L   I       L  L+ + 
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLW 237

Query: 199 LFDNELQ 205
           +  +++Q
Sbjct: 238 MIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 48/172 (27%), Positives = 70/172 (40%), Gaps = 9/172 (5%)

Query: 38  TIPSQ-LGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDL-RGNQLSGAFPSFIFNK 94
           TIP+     LS L+ L L  N +  SIPS  F    +L+ +DL    +LS       F  
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEG 183

Query: 95  -SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF 153
            S+L+ L+L+   L  EIP    + L  L+ + LS N      P +     +LQ L +  
Sbjct: 184 LSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           +           N+  L E+ L  N L        + L  LE + L  N   
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.1 bits (211), Expect = 5e-20
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 15/167 (8%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLS 103
            +  L  + ++   ++ +IP       +L  + L GN+++    +      ++L  L LS
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSG----- 158
           +N++S  +     +N P L  + L+ N     +P  L+   Y+Q++ L  N+ S      
Sbjct: 225 FNSIS-AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSND 282

Query: 159 -AIPKEIGNVTKLKELYLVRNRLQ-GEIPREL-SNLAELELMSLFDN 202
              P           + L  N +Q  EI       +     + L + 
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 28/184 (15%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLS 103
            L  L+ L LS N+L   +P       TL+ + +  N+++      +FN  + +  ++L 
Sbjct: 98  PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELG 153

Query: 104 YNAL-SGEIPANICSNLPFLEYISLSQNMFHG---GIPSAL------------------S 141
            N L S  I       +  L YI ++         G+P +L                   
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLK 213

Query: 142 KCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD 201
               L  LGLSFN  S      + N   L+EL+L  N+L  ++P  L++   ++++ L +
Sbjct: 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 202 NELQ 205
           N + 
Sbjct: 273 NNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.6 bits (202), Expect = 8e-19
 Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 13/185 (7%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQL 83
             + ++    +T        NL +L +L L  N++S  I    F     L+ + L  NQL
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL 112

Query: 84  SGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH-GGIPS-ALS 141
               P  +    +LQ+L +  N ++ ++  ++ + L  +  + L  N     GI + A  
Sbjct: 113 K-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 142 KCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLF 200
               L  + ++  + +  IP+  G    L EL+L  N++  ++    L  L  L  + L 
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 201 DNELQ 205
            N + 
Sbjct: 225 FNSIS 229

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 16/152 (10%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAFPSFIF-NKS 95
           TIP  L    SL  L+L  N+++  + +A+    + L  + L  N +S A  +    N  
Sbjct: 185 TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTP 240

Query: 96  SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG------GIPSALSKCTYLQIL 149
            L++L L+ N L  ++P  + ++  +++ + L  N            P   +K      +
Sbjct: 241 HLRELHLNNNKLV-KVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 150 GLSFNDFS-GAIPKEI-GNVTKLKELYLVRNR 179
            L  N      I       V     + L   +
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 23/103 (22%)

Query: 33  LNLTG----TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP 88
           L+L       +P  L +   +Q + L  N +S +I S  F                   P
Sbjct: 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDF-----------------CPP 286

Query: 89  SFIFNKSSLQDLDLSYNALS-GEIPANICSNLPFLEYISLSQN 130
            +   K+S   + L  N +   EI  +    +     + L   
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.6 bits (212), Expect = 7e-20
 Identities = 51/177 (28%), Positives = 78/177 (44%), Gaps = 11/177 (6%)

Query: 34  NLTGTIPSQ-LGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAFPSFI 91
           N    I       L+SL +L L  N L+  IPS  F     L+ + LR N +  + PS+ 
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 92  FNK-SSLQDLDLS-YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQIL 149
           FN+  SL  LDL     L   I       L  L+Y++L        +P  L+    L+ L
Sbjct: 167 FNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEEL 223

Query: 150 GLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNELQ 205
            +S N F    P     ++ LK+L+++ +++   I R     LA L  ++L  N L 
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 14/190 (7%)

Query: 22  SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRG 80
                  N+   N+         +L  L+ L L  N +   I    F    +L  ++L  
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 81  NQLS----GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI 136
           N L+    GAF       S L++L L  N +   IP+   + +P L  + L +      I
Sbjct: 133 NWLTVIPSGAF----EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 137 PS-ALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELE 195
              A      L+ L L   +    +P  +  +  L+EL +  N      P     L+ L+
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 196 LMSLFDNELQ 205
            + + ++++ 
Sbjct: 246 KLWVMNSQVS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLRGNQLSGAF 87
           N+   N+   +P+ L  L  L+ L +S N     I   +F    +LK + +  +Q+S   
Sbjct: 202 NLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LI 257

Query: 88  PSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133
               F+  +SL +L+L++N LS  +P ++ + L +L  + L  N ++
Sbjct: 258 ERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 29  NVSGLNLTGTIPSQ-LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAF 87
           ++  L     I       L +L+ LNL    +   +P+ T +   L+ +++ GN      
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVG-LEELEMSGNHFP-EI 233

Query: 88  PSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYL 146
               F+  SSL+ L +  + +S  I  N    L  L  ++L+ N          +   YL
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292

Query: 147 QILGLSFN 154
             L L  N
Sbjct: 293 VELHLHHN 300

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.9 bits (208), Expect = 8e-20
 Identities = 40/176 (22%), Positives = 62/176 (35%), Gaps = 8/176 (4%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAFPSFIF 92
            ++    +      +L  L L  N L+  I +A F     L+ +DL  N    +     F
Sbjct: 43  RISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101

Query: 93  NK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS-ALSKCTYLQILG 150
           +    L  L L    L  E+   +   L  L+Y+ L  N     +P         L  L 
Sbjct: 102 HGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLF 159

Query: 151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNELQ 205
           L  N  S    +    +  L  L L +NR+   +      +L  L  + LF N L 
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 43/190 (22%), Positives = 72/190 (37%), Gaps = 7/190 (3%)

Query: 18  CDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYV 76
           C  ++      +     L   +P  +   ++ Q + L  NR+S  +P+A+F     L  +
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTIL 61

Query: 77  DLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI 136
            L  N L+    +     + L+ LDLS NA    +       L  L  + L +       
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 137 PSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRELSNLAELE 195
           P        LQ L L  N    A+P +   ++  L  L+L  NR+     R    L  L+
Sbjct: 122 PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 196 LMSLFDNELQ 205
            + L  N + 
Sbjct: 181 RLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 38  TIPSQ-LGNLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLRGNQLSGAFPSFIFNK- 94
            +P     +L +L  L L  NR+S S+P   F   H+L  + L  N+++       F   
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDL 200

Query: 95  SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133
             L  L L  N LS  +P    + L  L+Y+ L+ N + 
Sbjct: 201 GRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.9 bits (208), Expect = 9e-20
 Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 30/209 (14%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLS------------------------ 60
            T   +    L          L+ L  L+LS N LS                        
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 61  -GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSN 118
             ++ S       L+++D + + L       +F    +L  LD+S+          I + 
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNG 148

Query: 119 LPFLEYISLSQNMFHGGIPS-ALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLV 176
           L  LE + ++ N F         ++   L  L LS       +      +++ L+ L + 
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207

Query: 177 RNRLQGEIPRELSNLAELELMSLFDNELQ 205
            N            L  L+++    N + 
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.2 bits (188), Expect = 7e-17
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 4/168 (2%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLRGNQLSGAFPSFIFNK-S 95
           T+ S    L  L+ L+   + L      + F++   L Y+D+          + IFN  S
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLS 150

Query: 96  SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFND 155
           SL+ L ++ N+       +I + L  L ++ LSQ       P+A +  + LQ+L +S N+
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210

Query: 156 FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAE-LELMSLFDN 202
           F          +  L+ L    N +     +EL +    L  ++L  N
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 6/157 (3%)

Query: 48  SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNAL 107
           S   +  +   L+ S+P+   I  +   ++L  N+L           + L  L LS N L
Sbjct: 8   SGTEIRCNSKGLT-SVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 108 S-GEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-G 165
           S     +        L+Y+ LS N     + S       L+ L    ++        +  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 166 NVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
           ++  L  L +     +       + L+ LE++ +  N
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 9e-12
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 5/132 (3%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAF 87
           ++S  +           LSSL+ L ++ N    +     F     L ++DL   QL    
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QL 190

Query: 88  PSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSK-CTY 145
               FN  SSLQ L++S+N     +       L  L+ +  S N         L    + 
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249

Query: 146 LQILGLSFNDFS 157
           L  L L+ NDF+
Sbjct: 250 LAFLNLTQNDFA 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.3 bits (209), Expect = 2e-19
 Identities = 38/177 (21%), Positives = 77/177 (43%), Gaps = 11/177 (6%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP 88
           ++   N++  + S L    +++ L+ S N ++  +     +   L  + L+ N L+    
Sbjct: 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVNVE--LTILKLQHNNLTD--T 241

Query: 89  SFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQI 148
           +++ N   L ++DLSYN L  +I  +    +  LE + +S N     +         L++
Sbjct: 242 AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 299

Query: 149 LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           L LS N     + +      +L+ LYL  N +   +   LS    L+ ++L  N+  
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.4 bits (204), Expect = 7e-19
 Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 13/189 (6%)

Query: 19  DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVD 77
           D+  +   +       +     + L +   ++ LNL+  ++   I +  F     ++ + 
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLY 99

Query: 78  LRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI 136
           +  N +    P  +F     L  L L  N LS  +P  I  N P L  +S+S N      
Sbjct: 100 MGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIE 157

Query: 137 PSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELEL 196
                  T LQ L LS N  +  +   +  +  L    +  N L       L+    +E 
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEE 209

Query: 197 MSLFDNELQ 205
           +    N + 
Sbjct: 210 LDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 79.7 bits (197), Expect = 6e-18
 Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 27/198 (13%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLS 84
           TV  +   +L+        N   L +L++S N L   I   TF  T +L+ + L  N+L+
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 178

Query: 85  ----GAFPS------------FIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS 128
                  PS             +    ++++LD S+N+++  +   +   L  L    L 
Sbjct: 179 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVNVELTIL---KLQ 234

Query: 129 QNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRE 187
            N       + L     L  + LS+N+    I       + +L+ LY+  NRL   +   
Sbjct: 235 HNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLY 290

Query: 188 LSNLAELELMSLFDNELQ 205
              +  L+++ L  N L 
Sbjct: 291 GQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.0 bits (190), Expect = 5e-17
 Identities = 29/171 (16%), Positives = 66/171 (38%), Gaps = 7/171 (4%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAF 87
           ++           +   L++ + +    + +   +P+A   +   ++ ++L   Q+    
Sbjct: 27  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EI 84

Query: 88  PSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYL 146
            ++ F    ++Q L + +NA+   +P ++  N+P L  + L +N               L
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143

Query: 147 QILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRELSNLAELEL 196
             L +S N+    I  +     T L+ L L  NRL       + +L    +
Sbjct: 144 TTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 7e-17
 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 16/185 (8%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGN 81
            +V + N++ L +            ++Q L + FN +   +P   F     L  + L  N
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 127

Query: 82  QLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL 140
            LS + P  IF+    L  L +S N L   I  +       L+ + LS N       S +
Sbjct: 128 DLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 185

Query: 141 SKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLF 200
                L    +S+N  S      +     ++EL    N +   +   +    EL ++ L 
Sbjct: 186 PS---LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQ 234

Query: 201 DNELQ 205
            N L 
Sbjct: 235 HNNLT 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 7/171 (4%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK-SS 96
            I S L        +++                +  K V  + + +    P+ + +    
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 97  LQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF 156
           ++ L+L+   +  EI     +    ++ + +  N      P        L +L L  ND 
Sbjct: 71  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 157 SGAIPKEI-GNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNELQ 205
           S ++P+ I  N  KL  L +  N L+  I  +       L+ + L  N L 
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF---NK 94
            +         L++L L  N +  ++  +T   HTLK + L  N         +F    +
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIV-TLKLSTH--HTLKNLTLSHNDWDCNSLRALFRNVAR 365

Query: 95  SSLQDLDLS 103
            ++ D D  
Sbjct: 366 PAVDDADQH 374

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 5e-19
 Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 27/185 (14%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
           +TV  ++   L  ++P    +L   + L+   NRLS ++P        LK++D+  NQL+
Sbjct: 82  ITVLEITQNALI-SLPELPASL---EYLDACDNRLS-TLPEL--PAS-LKHLDVDNNQLT 133

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
              P      + L+ ++   N L+  +P    S    LE +S+  N     +P       
Sbjct: 134 -MLPELP---ALLEYINADNNQLT-MLPELPTS----LEVLSVRNNQL-TFLPELPES-- 181

Query: 145 YLQILGLSFNDFSGAIPKEIGNVTKLKE----LYLVRNRLQGEIPRELSNLAELELMSLF 200
            L+ L +S N    ++P         +E         NR+   IP  + +L     + L 
Sbjct: 182 -LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 201 DNELQ 205
           DN L 
Sbjct: 239 DNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.2 bits (187), Expect = 2e-16
 Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 23/163 (14%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
                +   L  ++    L L+   LS S+P    +   +  +++  N L  + P     
Sbjct: 48  EAVSLLKECL--INQFSELQLNRLNLS-SLPDN--LPPQITVLEITQNALI-SLPELP-- 99

Query: 94  KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF 153
            +SL+ LD   N LS  +P    S    L+++ +  N     +P   +    L+ +    
Sbjct: 100 -ASLEYLDACDNRLS-TLPELPAS----LKHLDVDNNQLT-MLPELPAL---LEYINADN 149

Query: 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELEL 196
           N  +  +P+   +   L+ L +  N+L   +P    +L  L++
Sbjct: 150 NQLT-MLPELPTS---LEVLSVRNNQLT-FLPELPESLEALDV 187

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.8 bits (186), Expect = 2e-16
 Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 23/180 (12%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP 88
           +     L+ T+P    +L   + L++  N+L+  +P        L+Y++   NQL+   P
Sbjct: 106 DACDNRLS-TLPELPASL---KHLDVDNNQLT-MLPEL--PAL-LEYINADNNQLT-MLP 156

Query: 89  SFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQ- 147
                 +SL+ L +  N L+  +P    S    LE + +S N+    +P+   +  + + 
Sbjct: 157 ELP---TSLEVLSVRNNQLT-FLPELPES----LEALDVSTNLLES-LPAVPVRNHHSEE 207

Query: 148 ---ILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
                    N  +  IP+ I ++     + L  N L   I   LS               
Sbjct: 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.7 bits (165), Expect = 1e-13
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRG---NQLSGAFPSFIFNK 94
           +I   + N  SL S N  +N +SG+           +   L G   N+        + N 
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN- 59

Query: 95  SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFN 154
               +L L+   LS  +P N+      +  + ++QN     +P   +    L+ L    N
Sbjct: 60  -QFSELQLNRLNLS-SLPDNLPPQ---ITVLEITQNALI-SLPELPAS---LEYLDACDN 110

Query: 155 DFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELEL 196
             S  +P+   +   LK L +  N+L   +P   + L  +  
Sbjct: 111 RLS-TLPELPAS---LKHLDVDNNQLT-MLPELPALLEYINA 147

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 6/91 (6%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQS----LNLSFNRLSGSIPSATFITHTLKYVDLRGN 81
              +VS   L  ++P+        +          NR++  IP           + L  N
Sbjct: 183 EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240

Query: 82  QLSGAFPSFIFNKSSLQDLDLSYNALSGEIP 112
            LS      +  +++  D        S    
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.6 bits (204), Expect = 8e-19
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 7/183 (3%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ 82
             + + N +              +S    L+ S N L+ ++         L+ + L+ NQ
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 83  LSGAFP-SFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL 140
           L      + +  +  SLQ LD+S N++S +     CS    L  +++S N+    I   L
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 141 SKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSL 199
                +++L L  N    +IPK++  +  L+EL +  N+L+  +P      L  L+ + L
Sbjct: 420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL 475

Query: 200 FDN 202
             N
Sbjct: 476 HTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.3 bits (146), Expect = 4e-11
 Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 13/184 (7%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLS 84
            + + S   L   +P  L        LN+S N +S  + ++  ++ + L+ + +  N++ 
Sbjct: 3   FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ 58

Query: 85  GAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSK 142
                 +F     L+ LDLS+N L  +I    C     L+++ LS N F    I      
Sbjct: 59  -YLDISVFKFNQELEYLDLSHNKLV-KIS---CHPTVNLKHLDLSFNAFDALPICKEFGN 113

Query: 143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKE-LYLVRNRLQGEIPRELSNLAELELMSLFD 201
            + L+ LGLS      +    I ++   K  L L     + E P  L +     L  +F 
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 202 NELQ 205
              +
Sbjct: 174 TNKE 177

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 32/183 (17%), Positives = 74/183 (40%), Gaps = 9/183 (4%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQL 83
            T+ N+S   ++    S + +LS L+ L +S NR+   +  + F  +  L+Y+DL  N+L
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81

Query: 84  SGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSK 142
                    +   +L+ LDLS+NA           N+  L+++ LS           ++ 
Sbjct: 82  V----KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
               ++L +    +     ++   +       L       +    + +++   + +L  +
Sbjct: 138 LNISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 203 ELQ 205
            ++
Sbjct: 196 NIK 198

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSY 104
              SL SLN+S N L+ +I     +   +K +DL  N++  + P  +    +LQ+L+++ 
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVAS 453

Query: 105 NALSGEIPANICSNLPFLEYISLSQNMFH 133
           N L   +P  I   L  L+ I L  N + 
Sbjct: 454 NQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 24/183 (13%), Positives = 56/183 (30%), Gaps = 6/183 (3%)

Query: 27  VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGA 86
           + +VS   +     S +  +      +   + L+    +      TL  ++   N     
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 87  FPSFIFNKSSLQDLDLSYNALSG----EIPANICSNLPFLEYISLSQNMFHGGIPSALSK 142
               +   +++    +S   L G           ++L  L    +  ++F          
Sbjct: 241 LQ--LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
            + + I   + +            ++    L    N L   +     +L ELE + L  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 203 ELQ 205
           +L+
Sbjct: 359 QLK 361

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.3 bits (203), Expect = 1e-18
 Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 13/164 (7%)

Query: 42  QLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101
            L  + SL   N+S+N LS ++         ++ +D   N ++      +     L  L 
Sbjct: 187 DLSLIPSLFHANVSYNLLS-TLAIPIA----VEELDASHNSIN-VVRGPVN--VELTILK 238

Query: 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIP 161
           L +N L+ +       N P L  + LS N     +     K   L+ L +S N    A+ 
Sbjct: 239 LQHNNLT-DTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 294

Query: 162 KEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
                +  LK L L  N L   + R       LE + L  N + 
Sbjct: 295 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.4 bits (198), Expect = 5e-18
 Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 13/189 (6%)

Query: 19  DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVD 77
           D+  +   +       +     + L +   ++ LNL+  ++   I +  F     ++ + 
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLY 105

Query: 78  LRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI 136
           +  N +    P  +F     L  L L  N LS  +P  I  N P L  +S+S N      
Sbjct: 106 MGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIE 163

Query: 137 PSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELEL 196
                  T LQ L LS N  +  +   +  +  L    +  N L       L+    +E 
Sbjct: 164 DDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEE 215

Query: 197 MSLFDNELQ 205
           +    N + 
Sbjct: 216 LDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 77.7 bits (191), Expect = 5e-17
 Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 15/183 (8%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ 82
            ++T  ++S  NL           +SLQ+L LS NRL+  +  +     +L + ++  N 
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNL 203

Query: 83  LSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSK 142
           LS      +    ++++LD S+N+++  +   +   L  L    L  N       + L  
Sbjct: 204 LS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELTIL---KLQHNNLTD--TAWLLN 252

Query: 143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
              L  + LS+N+    +      + +L+ LY+  NRL   +      +  L+++ L  N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311

Query: 203 ELQ 205
            L 
Sbjct: 312 HLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.5 bits (188), Expect = 1e-16
 Identities = 29/171 (16%), Positives = 66/171 (38%), Gaps = 7/171 (4%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAF 87
           ++           +   L++ + +    + +   +P+A   +   ++ ++L   Q+    
Sbjct: 33  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EI 90

Query: 88  PSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYL 146
            ++ F    ++Q L + +NA+   +P ++  N+P L  + L +N               L
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149

Query: 147 QILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRELSNLAELEL 196
             L +S N+    I  +     T L+ L L  NRL       + +L    +
Sbjct: 150 TTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.7 bits (173), Expect = 1e-14
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 7/171 (4%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK-SS 96
            I S L        +++                +  K V  + + +    P+ + +    
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76

Query: 97  LQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF 156
           ++ L+L+   +  EI     +    ++ + +  N      P        L +L L  ND 
Sbjct: 77  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 157 SGAIPKEI-GNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNELQ 205
           S ++P+ I  N  KL  L +  N L+  I  +       L+ + L  N L 
Sbjct: 136 S-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 14/167 (8%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF---NK 94
            +         L++L L  N +  ++  +T   HTLK + L  N         +F    +
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIV-TLKLSTH--HTLKNLTLSHNDWDCNSLRALFRNVAR 371

Query: 95  SSLQDLDLSYNALSGEIPANICSNLP------FLEYISLSQNMFHGGIPSALSKCTYLQI 148
            ++ D D              C           L+YI+L+       +  A  +C+    
Sbjct: 372 PAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTS--VVEKVQRAQGRCSATDT 429

Query: 149 LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELE 195
           +    +       +    +   ++L    N L+ E+ +  +   + E
Sbjct: 430 INSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQE 476

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.5 bits (202), Expect = 2e-18
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 13/167 (7%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97
           +  S L  L++L+SL  + N++S   P        L  + L GNQL       + + ++L
Sbjct: 190 SDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNL 245

Query: 98  QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157
            DLDL+ N +S   P    S L  L  + L  N       S L+  T L  L L+ N   
Sbjct: 246 TDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLE 300

Query: 158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
              P  I N+  L  L L  N +    P  +S+L +L+ +  ++N++
Sbjct: 301 DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.9 bits (195), Expect = 2e-17
 Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 13/179 (7%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
           T  +++   ++   P  L  L+ L  L L  N++S   P A      L  ++L  NQL  
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLED 301

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
              S I N  +L  L L +N +S   P    S+L  L+ +    N       S+L+  T 
Sbjct: 302 --ISPISNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFYNNKVSD--VSSLANLTN 354

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
           +  L    N  S   P  + N+T++ +L L             +N++    +      L
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.3 bits (191), Expect = 6e-17
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 14/168 (8%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97
              + L NL++L  L L  N+++   P        L  ++L  N +S    S +   +SL
Sbjct: 103 ADITPLANLTNLTGLTLFNNQITDIDPLKNL--TNLNRLELSSNTISD--ISALSGLTSL 158

Query: 98  QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157
           Q L      ++   P    +NL  LE + +S N       S L+K T L+ L  + N  S
Sbjct: 159 QQLSFGNQ-VTDLKPL---ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS 212

Query: 158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
              P  +G +T L EL L  N+L+      L++L  L  + L +N++ 
Sbjct: 213 DITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 256

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.9 bits (190), Expect = 8e-17
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 14/168 (8%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97
           +  S L  L+SLQ L+   N+++   P A   T  L+ +D+  N++S    S +   ++L
Sbjct: 147 SDISALSGLTSLQQLSFG-NQVTDLKPLANLTT--LERLDISSNKVSD--ISVLAKLTNL 201

Query: 98  QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157
           + L  + N +S   P      L  L+ +SL+ N         L+  T L  L L+ N  S
Sbjct: 202 ESLIATNNQISDITP---LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 256

Query: 158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
              P  +  +TKL EL L  N++    P  L+ L  L  + L +N+L+
Sbjct: 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.9 bits (190), Expect = 8e-17
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
                +   ++   P  LG L++L  L+L+ N+L   I +   +T+ L  +DL  NQ+S 
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTN-LTDLDLANNQISN 257

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
              + +   + L +L L  N +S   P    + L  L  + L++N       S +S    
Sbjct: 258 --LAPLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKN 310

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           L  L L FN+ S   P  + ++TKL+ L+   N++       L+NL  +  +S   N++ 
Sbjct: 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS 366

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 13/159 (8%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100
                L+      L    ++ ++         +  +      +       +   ++L  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDL--DQVTTLQADRLGIKS--IDGVEYLNNLTQI 73

Query: 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI 160
           + S N L+   P     NL  L  I ++ N       + L+  T L  L L  N  +   
Sbjct: 74  NFSNNQLTDITP---LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDID 128

Query: 161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSL 199
           P  + N+T L  L L  N +       LS L  L+ +S 
Sbjct: 129 P--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.2 bits (183), Expect = 6e-16
 Identities = 44/199 (22%), Positives = 73/199 (36%), Gaps = 32/199 (16%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
           VT      L +       +  L++L  +N S N+L+   P        L  + +  NQ++
Sbjct: 48  VTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITPLKNLT--KLVDILMNNNQIA 103

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP------- 137
               + + N ++L  L L  N ++   P     NL  L  + LS N              
Sbjct: 104 D--ITPLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSL 158

Query: 138 ------------SALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIP 185
                         L+  T L+ L +S N  S      +  +T L+ L    N++    P
Sbjct: 159 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216

Query: 186 RELSNLAELELMSLFDNEL 204
             L  L  L+ +SL  N+L
Sbjct: 217 --LGILTNLDELSLNGNQL 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 11/156 (7%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
           T   ++   L    P  + NL +L  L L FN +S   P ++     L+ +    N++S 
Sbjct: 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL--TKLQRLFFYNNKVSD 345

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
              S + N +++  L   +N +S   P    +NL  +  + L+   +     +  +  + 
Sbjct: 346 --VSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNAPVNYKANVSI 400

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181
              +           P  I +     E  +  N   
Sbjct: 401 PNTVKNVTGALI--APATISDGGSYTEPDITWNLPS 434

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 3e-18
 Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 12/185 (6%)

Query: 5   NTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP 64
            + +    W           + V +++  +       Q+    +L +L+LS N   G   
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 65  SATFIT----HTLKYVDLRGNQ---LSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICS 117
             + +      TL+ + LR       SG   +    +  LQ LDLS+N+L     A  C 
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 118 NLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVR 177
               L  ++LS            +K   L +L LS+N      P     + ++  L L  
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDR-NPS-PDELPQVGNLSLKG 305

Query: 178 NRLQG 182
           N    
Sbjct: 306 NPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 4e-14
 Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 15/187 (8%)

Query: 24  RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSA------TFITHTLKYVD 77
            +    +  L +TGT P  L   +      L+   +S +   A       ++   LK + 
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 78  LRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIP---ANICSNLPFLEYISLSQNMFH- 133
           +            +    +L  LDLS N   GE     A      P L+ ++L       
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 134 --GGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPREL-S 189
             G   +  +    LQ L LS N    A         ++L  L L    L+ ++P+ L +
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA 274

Query: 190 NLAELEL 196
            L+ L+L
Sbjct: 275 KLSVLDL 281

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 15/196 (7%)

Query: 24  RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITH--TLKYVDLRGN 81
           R+TV      +       ++  +S LQ L L    ++G+ P          L  ++LR  
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 82  QLSGAFPS----FIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN------- 130
             +           + K  L+ L ++                P L  + LS N       
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 131 MFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPREL-S 189
           +     P        L +        SG          +L+ L L  N L+         
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 190 NLAELELMSLFDNELQ 205
             ++L  ++L    L+
Sbjct: 251 WPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 15/195 (7%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT---LKYVDLRGNQ 82
            +             + +    SL+ L +   R+   I            L+ + L   +
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 83  LSGAFPSFIFNKS--SLQDLDLSYNALSG---EIPANICSNLPFLEYISLSQNMFHGGIP 137
           ++G  P  +   +   L  L+L   + +     +        P L+ +S++Q        
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 138 SALSKCTYLQILGLSFNDFSGAIPKEI----GNVTKLKELYLVRNRLQ---GEIPRELSN 190
             +     L  L LS N   G               L+ L L    ++   G      + 
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 191 LAELELMSLFDNELQ 205
             +L+ + L  N L+
Sbjct: 227 RVQLQGLDLSHNSLR 241

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 3e-18
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 10/170 (5%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQL-SGAFPSFIFNKS 95
            IP  L   SSL  L +  NR+   +P   F     +  +++ GN L +  F    F+  
Sbjct: 116 EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 96  SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFND 155
            L  L +S   L+  IP ++   L     + L  N         L + + L  LGL  N 
Sbjct: 173 KLNYLRISEAKLT-GIPKDLPETL---NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 156 FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
                   +  +  L+EL+L  N+L   +P  L +L  L+++ L  N + 
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.3 bits (196), Expect = 7e-18
 Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 12/169 (7%)

Query: 40  PSQLGNLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLRGNQLSGAFPSFIFNKSSLQ 98
                 L  L +L L  N++S  I    F     L+ + +  N L    P  +   SSL 
Sbjct: 71  KDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLV 126

Query: 99  DLDLSYNALSGEIPANICSNLPFLEYISLSQN-MFHGGIPSALSKCTYLQILGLSFNDFS 157
           +L +  N +  ++P  + S L  +  I +  N + + G          L  L +S    +
Sbjct: 127 ELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

Query: 158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNELQ 205
             IPK       L EL+L  N++Q  I  E L   ++L  + L  N+++
Sbjct: 186 -GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 3e-16
 Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 37/191 (19%)

Query: 40  PSQLGNLSSLQSLNLSFNRL-SGSIPSATFITHTLKYVDLRGNQLS----GAF------- 87
                 L ++  + +  N L +       F    L Y+ +   +L+              
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199

Query: 88  ---------PSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP 137
                          + S L  L L +N +   I     S LP L  + L  N     +P
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSR-VP 257

Query: 138 SALSKCTYLQILGLSFNDFSGAIPKEI-------GNVTKLKELYLVRNRLQ-GEIP---- 185
           + L     LQ++ L  N+ +  +                   + L  N +   E+     
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 186 RELSNLAELEL 196
           R +++   ++ 
Sbjct: 317 RCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 33/134 (24%)

Query: 73  LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
           L+ V      L  A P  I        LDL  N +S E+  +    L  L  + L  N  
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN-- 88

Query: 133 HGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPREL-SNL 191
                         +I  +    FS         + KL++LY+ +N L  EIP  L S+L
Sbjct: 89  --------------KISKIHEKAFSP--------LRKLQKLYISKNHLV-EIPPNLPSSL 125

Query: 192 AELELMSLFDNELQ 205
            EL    + DN ++
Sbjct: 126 VEL---RIHDNRIR 136

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 23/103 (22%)

Query: 33  LNLTG----TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP 88
           L+L       +P+ L +L  LQ + L  N ++  +    F                    
Sbjct: 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDF-----------------CPV 287

Query: 89  SFIFNKSSLQDLDLSYNALS-GEIPANICSNLPFLEYISLSQN 130
            F   ++    + L  N +   E+       +     I     
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.1 bits (200), Expect = 4e-18
 Identities = 45/180 (25%), Positives = 66/180 (36%), Gaps = 29/180 (16%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
               VSG  LT ++P     L  L   +     L             L  + + GNQL+ 
Sbjct: 84  RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT- 134

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
           + P        LQ+L +S N L+  +PA        L  +    N     +P   S    
Sbjct: 135 SLPVLPPG---LQELSVSDNQLA-SLPALPSE----LCKLWAYNNQLT-SLPMLPSG--- 182

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           LQ L +S N  + ++P        L +L+   NRL   +P   S L EL    +  N L 
Sbjct: 183 LQELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 1e-16
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 26/176 (14%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP 88
           +VS   L  ++P+    L  L + N     L             L+ + +  NQL+ + P
Sbjct: 147 SVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSG-------LQELSVSDNQLA-SLP 197

Query: 89  SFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQI 148
           +     S L  L    N L+  +PA        L+ + +S N     +P   S+   L+ 
Sbjct: 198 TLP---SELYKLWAYNNRLT-SLPALPSG----LKELIVSGNRL-TSLPVLPSE---LKE 245

Query: 149 LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
           L +S N  + ++P        L  L + RN+L   +P  L +L+    ++L  N L
Sbjct: 246 LMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.5 bits (183), Expect = 5e-16
 Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 26/180 (14%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
           +T   +   NLT ++P+    L   ++L +S N+L+ S+P        L         L 
Sbjct: 63  ITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP 117

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
            A P      S L  L +  N L+  +P         L+ +S+S N     +P+  S+  
Sbjct: 118 -ALP------SGLCKLWIFGNQLT-SLPVLPPG----LQELSVSDNQL-ASLPALPSELC 164

Query: 145 YLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            L            ++P        L+EL +  N+L   +P   S L +L   +     L
Sbjct: 165 KLWAYNNQLT----SLPMLPSG---LQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.6 bits (178), Expect = 3e-15
 Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 22/170 (12%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP 88
                 LT ++P     L   Q L++S N+L+ S+P+    +  L  +    N+L+ + P
Sbjct: 167 WAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTL--PSE-LYKLWAYNNRLT-SLP 217

Query: 89  SFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQI 148
           +     S L++L +S N L+  +P         L+ + +S N     +P   S    L  
Sbjct: 218 ALP---SGLKELIVSGNRLT-SLPVLPSE----LKELMVSGNRL-TSLPMLPSG---LLS 265

Query: 149 LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMS 198
           L +  N  +  +P+ + +++    + L  N L     + L  +      S
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.2 bits (169), Expect = 5e-14
 Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 24/160 (15%)

Query: 46  LSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN 105
            +    LN+  + L+ ++P    +   +  + +  N L+ + P+       L+ L++S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDC--LPAHITTLVIPDNNLT-SLPALPPE---LRTLEVSGN 91

Query: 106 ALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIG 165
            L+  +P      L  L   S         +P+  S    L  L +  N  + ++P    
Sbjct: 92  QLT-SLPVLP-PGLLELSIFSNPLTH----LPALPSG---LCKLWIFGNQLT-SLPVLPP 141

Query: 166 NVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
               L+EL +  N+L   +P   S L +L     ++N+L 
Sbjct: 142 G---LQELSVSDNQLA-SLPALPSELCKLW---AYNNQLT 174

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.5 bits (196), Expect = 1e-17
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 12/178 (6%)

Query: 33  LNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP-SFI 91
           L+L     + +  + S+  + LS N+L  ++P       T   + L  N+L       F+
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINL---TANLIHLSENRLENLDILYFL 422

Query: 92  FNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI-----PSALSKCTYL 146
                LQ L L+ N  S        S  P LE + L +NM                 ++L
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482

Query: 147 QILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
           Q+L L+ N  +   P    ++T L+ L L  NRL   +       A LE++ +  N+L
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.5 bits (191), Expect = 5e-17
 Identities = 54/205 (26%), Positives = 80/205 (39%), Gaps = 23/205 (11%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLRGN 81
             + V N++   +          L +LQ LNLS+N L   + S+ F     + Y+DL+ N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKN 348

Query: 82  QLSGAFPSFIFNKSSLQDLDLSYNA--------------LSGEIPANICSNLPFLEYISL 127
            ++            LQ LDL  NA              LSG     +         I L
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408

Query: 128 SQNMFHG-GIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIP 185
           S+N      I   L +  +LQIL L+ N FS     +       L++L+L  N LQ    
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 186 REL-----SNLAELELMSLFDNELQ 205
            EL       L+ L+++ L  N L 
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 34/192 (17%)

Query: 17  TCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYV 76
           +C               NLT  +P     L++ + L LSFN +  ++ +++F        
Sbjct: 1   SCSFDGRIA---FYRFCNLT-QVPQ---VLNTTERLLLSFNYIR-TVTASSF-------- 44

Query: 77  DLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI 136
                               LQ L+L        I      NLP L  + L  +  +   
Sbjct: 45  ---------------PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89

Query: 137 PSALSKCTYLQILGLSFNDFSGAI--PKEIGNVTKLKELYLVRNRLQG-EIPRELSNLAE 193
           P A     +L  L L F   S A+       N+  L  L L +N+++   +      L  
Sbjct: 90  PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149

Query: 194 LELMSLFDNELQ 205
           L+ +    N++ 
Sbjct: 150 LKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.1 bits (182), Expect = 9e-16
 Identities = 40/199 (20%), Positives = 71/199 (35%), Gaps = 20/199 (10%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATF-ITHTLKYVDLRGNQL 83
           V   ++S   +          L  L+ LNL++N+++  I    F     L+ ++L  N L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLL 326

Query: 84  SGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN------------- 130
              + S  +    +  +DL  N ++  I       L  L+ + L  N             
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385

Query: 131 --MFHGGIPSALSKCTYLQILGLSFNDFSG-AIPKEIGNVTKLKELYLVRNRLQGEIPRE 187
             +    + +         ++ LS N      I   +  V  L+ L L +NR       +
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 188 L-SNLAELELMSLFDNELQ 205
             S    LE + L +N LQ
Sbjct: 446 TPSENPSLEQLFLGENMLQ 464

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.9 bits (179), Expect = 2e-15
 Identities = 38/191 (19%), Positives = 64/191 (33%), Gaps = 14/191 (7%)

Query: 26  TVFNVSGLNLTGTIPSQ-LGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQL 83
            +  +       TI  +   NL +L+ L+L  +++   +    F     L  + L    L
Sbjct: 51  QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGL 109

Query: 84  SGAF--PSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALS 141
           S A     +  N  +L  LDLS N +           L  L+ I  S N         L 
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169

Query: 142 --KCTYLQILGLSFNDFSGAIPKEIGNVTK------LKELYLVRNRLQGEIPRELSN-LA 192
             +   L    L+ N     +  + G          L+ L +  N    +I    SN ++
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229

Query: 193 ELELMSLFDNE 203
           + +  SL    
Sbjct: 230 KSQAFSLILAH 240

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 29/199 (14%), Positives = 61/199 (30%), Gaps = 23/199 (11%)

Query: 29  NVSGLNLTGTIPSQLGNLS--SLQSLNLSFNRLSGSIPSA------TFITHTLKYVDLRG 80
           + S   +      +L  L   +L   +L+ N L   +          F    L+ +D+ G
Sbjct: 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213

Query: 81  NQLSGAFPSFIFNK------------SSLQDLDLSYNALSGEIPANICSNLP--FLEYIS 126
           N  +        N               +      ++ +  +   N  + L    + ++ 
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLD 272

Query: 127 LSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPR 186
           LS                 L++L L++N  +    +    +  L+ L L  N L      
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332

Query: 187 ELSNLAELELMSLFDNELQ 205
               L ++  + L  N + 
Sbjct: 333 NFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAF 87
            +     T         LS LQ L L+ N L+ S+P   F     L+ + L  N+L+   
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLT-VL 519

Query: 88  PSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133
                  ++L+ LD+S N L    P         L  + ++ N F 
Sbjct: 520 SHNDL-PANLEILDISRNQLLAPNP----DVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 11/134 (8%)

Query: 24  RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQL 83
            + V  ++   L    P    +L++L+ L+L+ NRL+  +       + L+ +D+  NQL
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPAN-LEILDISRNQL 538

Query: 84  SGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKC 143
               P       SL  LD+++N          C    F+ +++ +      G P+ +   
Sbjct: 539 LAPNPDVF---VSLSVLDITHNKFI-----CECELSTFINWLNHTNVTI-AGPPADIYCV 589

Query: 144 TYLQILGLSFNDFS 157
                 G+S    S
Sbjct: 590 YPDSFSGVSLFSLS 603

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.2 bits (188), Expect = 4e-17
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 11/165 (6%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDL 102
           +LS L +L L+ N +  S+    F    +L+ +      L+ +  +F      +L++L++
Sbjct: 74  SLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFH---GGIPSALSKCTYLQI-LGLSFNDFSG 158
           ++N +         SNL  LE++ LS N            L +   L + L LS N  + 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN- 190

Query: 159 AIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDN 202
            I        +LKEL L  N+L+  +P      L  L+ + L  N
Sbjct: 191 FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 13/174 (7%)

Query: 40  PSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNK-SSL 97
                +   LQ L+LS   +  +I    + + + L  + L GN +  +     F+  SSL
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 102

Query: 98  QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDF 156
           Q L      L+  +      +L  L+ ++++ N+     +P   S  T L+ L LS N  
Sbjct: 103 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 157 SGAIPKEI-GNVTKLK----ELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
             +I       + ++      L L  N +   I         L+ ++L  N+L+
Sbjct: 162 Q-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATF-----ITHTLKYVDLRGNQLSGAFPSFIFNKSSLQD 99
           NL++L+ L+LS N++  SI          +      +DL  N ++       F +  L++
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 100 LDLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133
           L L  N L   +P  I   L  L+ I L  N + 
Sbjct: 205 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 7/178 (3%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
           T+ ++S   L     + L   + L  LNL    L+  +     +   L  +DL  NQL  
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPV-LGTLDLSHNQLQ- 90

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
           + P       +L  LD+S+N L+  +P      L  L+ + L  N      P  L+    
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 146 LQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
           L+ L L+ N+ +  +P  +   +  L  L L  N L   IP+       L    L  N
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 4e-15
 Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 9/162 (5%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSY 104
            ++S   +N     L+ ++P    +      + L  N L     + +   + L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 105 NALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI 164
             L+ ++  +    LP L  + LS N     +P        L +L +SFN  + ++P   
Sbjct: 65  AELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

Query: 165 -GNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
              + +L+ELYL  N L+   P  L+   +LE +SL +N L 
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 7/161 (4%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDL 102
            L+ L+ L L+ N+L  ++P+  F     L+ + +  N+L  A P  +F++  +L +L L
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRL 116

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPK 162
             N L   +P  +  +L  L Y+SL  N           K T L+ L L  N     +P+
Sbjct: 117 DRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPE 174

Query: 163 EI-GNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
                +T+LK L L  N+L+        +L +L+++ L +N
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 72  TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM 131
               VD    +L+ A PS I   +  + LDL  N LS  +P+     L  L  + L+ N 
Sbjct: 17  NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNK 72

Query: 132 FHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRELSN 190
                     +   L+ L ++ N    A+P  +   +  L EL L RN+L+   PR   +
Sbjct: 73  LQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131

Query: 191 LAELELMSLFDNELQ 205
           L +L  +SL  NELQ
Sbjct: 132 LTKLTYLSLGYNELQ 146

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 45/197 (22%), Positives = 71/197 (36%), Gaps = 36/197 (18%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
                S  +LT  +P    +L SL   N +   LS   P        L+Y+ +  NQL  
Sbjct: 94  ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE- 144

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICS------------------NLPFLEYISL 127
             P  + N S L+ +D+  N+L  ++P    S                  NLPFL  I  
Sbjct: 145 KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYA 202

Query: 128 SQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE 187
             N     +P        L+ +    N        E+ N+  L  +Y   N L+  +P  
Sbjct: 203 DNNSLK-KLPDLPLS---LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDL 255

Query: 188 LSNLAELELMSLFDNEL 204
             +L  L +   +  +L
Sbjct: 256 PPSLEALNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.5 bits (168), Expect = 6e-14
 Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 33/185 (17%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATF-------------ITHTLKYVDLRG 80
           NLT  +P +  N+ S      +++    + P                 +      ++L  
Sbjct: 22  NLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80

Query: 81  NQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL 140
             LS + P    +   L+ L  S N+L+ E+P     +L  L   + +        P   
Sbjct: 81  LGLS-SLPELPPH---LESLVASCNSLT-ELPELP-QSLKSLLVDNNNLKALSDLPPL-- 132

Query: 141 SKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLF 200
                L+ LG+S N     +P E+ N + LK + +  N L+ ++P    +L  +   +  
Sbjct: 133 -----LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAG 181

Query: 201 DNELQ 205
           +N+L+
Sbjct: 182 NNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.8 bits (161), Expect = 5e-13
 Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 39/187 (20%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
              NV    LT  +P    +L+ L      F+ LS   P+       L Y++   N++  
Sbjct: 260 EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIR- 310

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
              S      SL++L++S N L  E+PA        LE +  S N     +P        
Sbjct: 311 ---SLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLA-EVPELPQN--- 358

Query: 146 LQILGLSFNDFSGAIPKEIGNVT----------------KLKELYLVRNRLQGEIPRELS 189
           L+ L + +N      P    +V                  LK+L++  N L+ E P    
Sbjct: 359 LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPE 416

Query: 190 NLAELEL 196
           ++ +L +
Sbjct: 417 SVEDLRM 423

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.3 bits (152), Expect = 9e-12
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 26/171 (15%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
           T        L  T+P    +L +L   +     L     S       L ++D+  N  SG
Sbjct: 240 TTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQS-------LTFLDVSENIFSG 291

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
                     +L  L+ S N +      ++C   P LE +++S N     +P+   +   
Sbjct: 292 -LSELP---PNLYYLNASSNEIR-----SLCDLPPSLEELNVSNNKLI-ELPALPPR--- 338

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELEL 196
           L+ L  SFN  +  +P+   N   LK+L++  N L+ E P    ++ +L +
Sbjct: 339 LERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRM 384

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 26/179 (14%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
              N S   +  ++     +L   + LN+S N+L   +P+       L+ +    N L+ 
Sbjct: 300 YYLNASSNEIR-SLCDLPPSL---EELNVSNNKLI-ELPALP---PRLERLIASFNHLA- 350

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
             P       +L+ L + YN L  E P    S    +E   L  N     +P        
Sbjct: 351 EVPELP---QNLKQLHVEYNPLR-EFPDIPES----VE--DLRMNSHLAEVPELPQN--- 397

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
           L+ L +  N      P    +   +++L +   R+            +LE      +  
Sbjct: 398 LKQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 144 TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE 203
           T+LQ      ++ +  +P E  NV    E Y   +  +   P       E+ +  L D  
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 204 LQ 205
            +
Sbjct: 70  DR 71

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.4 bits (183), Expect = 4e-16
 Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 31  SGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAFPS 89
           S  +L  +IPS L    +++SL+LS NR++  I ++       L+ + L  N ++     
Sbjct: 39  SSGSLN-SIPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEE 93

Query: 90  FIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP-SALSKCTYLQ 147
             F+   SL+ LDLSYN LS  + ++    L  L +++L  N +      S  S  T LQ
Sbjct: 94  DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 148 ILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           IL +   D    I ++    +T L+EL +  + LQ   P+ L ++  +  + L   +  
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 9e-15
 Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 15/173 (8%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAFPSFIFNK-SSLQ 98
           S   +L+ LQ L +        I    F     L+ +++  + L  ++         ++ 
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVS 201

Query: 99  DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG--------GIPSALSKCTYLQILG 150
            L L        +          +E + L               G  ++L K    + + 
Sbjct: 202 HLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDN 202
           ++       + K +  ++ L EL   RN+L+  +P      L  L+ + L  N
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 6/162 (3%)

Query: 46  LSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN 105
                    S   L+ SIPS   +T  +K +DL  N+++    S +    +LQ L L+ N
Sbjct: 30  CDRNGICKGSSGSLN-SIPSG--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 106 ALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI- 164
            ++  I  +  S+L  LE++ LS N       S     + L  L L  N +       + 
Sbjct: 87  GIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 165 GNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDNELQ 205
            ++TKL+ L +       +I R+  + L  LE + +  ++LQ
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 8e-09
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 10/97 (10%)

Query: 45  NLSSLQSLNLSFNRLSG----SIPSATFIT----HTLKYVDLRGNQLSGAFPSFIFNKSS 96
             SS++ L L    L       + +    +     T + V +    L       +   S 
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISG 278

Query: 97  LQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133
           L +L+ S N L   +P  I   L  L+ I L  N + 
Sbjct: 279 LLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.1 bits (182), Expect = 6e-16
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 12/164 (7%)

Query: 48  SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNA 106
           +   L+ S  +L  ++P +  +      +DL  N LS     +   + ++L  L LS+N 
Sbjct: 19  ASNILSCSKQQLP-NVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75

Query: 107 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-G 165
           L+  I +     +P L Y+ LS N  H       S    L++L L  N     + +    
Sbjct: 76  LN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFE 133

Query: 166 NVTKLKELYLVRNRLQGEIPRE----LSNLAELELMSLFDNELQ 205
           ++ +L++LYL +N++    P E     + L +L L+ L  N+L+
Sbjct: 134 DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.6 bits (178), Expect = 2e-15
 Identities = 50/176 (28%), Positives = 68/176 (38%), Gaps = 14/176 (7%)

Query: 31  SGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITH--TLKYVDLRGNQLSGAFP 88
           S   L   +P  L   S    L+LS N LS  + +    T    L  + L  N L+    
Sbjct: 26  SKQQLP-NVPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FIS 80

Query: 89  SFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQ 147
           S  F    +L+ LDLS N L   +   + S+L  LE + L  N       +A      LQ
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139

Query: 148 ILGLSFNDFSGAIPKEI----GNVTKLKELYLVRNRLQGEIPRELSNLAELELMSL 199
            L LS N  S   P E+      + KL  L L  N+L+     +L  L       L
Sbjct: 140 KLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 8e-15
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 10/144 (6%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDL 102
            L++L SL LS N L+  I S  F+    L+Y+DL  N L      F+F+   +L+ L L
Sbjct: 62  RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLL 119

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQN---MFHGGIPSALSKCTYLQILGLSFNDFSGA 159
             N +   +  N   ++  L+ + LSQN    F   +    +K   L +L LS N     
Sbjct: 120 YNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 160 IPKEIGNVTKLKE--LYLVRNRLQ 181
              ++  +    +  LYL  N L+
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 9/124 (7%)

Query: 38  TIPSQ-LGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNK- 94
            I S+    + +L+ L+LS N L  ++    F     L+ + L  N +        F   
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDM 135

Query: 95  SSLQDLDLSYNALSGEIPANI---CSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGL 151
           + LQ L LS N +S   P  +    + LP L  + LS N       + L K       GL
Sbjct: 136 AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 152 SFND 155
             ++
Sbjct: 195 YLHN 198

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.5 bits (176), Expect = 6e-16
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 6/141 (4%)

Query: 43  LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102
           +    +++ L ++    +   P +      L+ + + G  ++      +   +SL  LD+
Sbjct: 62  IEYAHNIKDLTINNIHATNYNPISGLSN--LERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPK 162
           S++A    I   I + LP +  I LS N     I   L     L+ L + F+        
Sbjct: 120 SHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG- 176

Query: 163 EIGNVTKLKELYLVRNRLQGE 183
            I +  KL +LY     + G+
Sbjct: 177 -IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 72  TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM 131
           +L Y+ L    ++    + I    +++DL ++    +   P    S L  LE + +    
Sbjct: 45  SLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGKD 99

Query: 132 FHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNL 191
                   LS  T L +L +S +    +I  +I  + K+  + L  N    +I   L  L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTL 158

Query: 192 AELELMSLFDNEL 204
            EL+ +++  + +
Sbjct: 159 PELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 4/105 (3%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
               + G ++T      L  L+SL  L++S +    SI +       +  +DL  N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
                +     L+ L++ ++ +          + P L  +     
Sbjct: 151 D-IMPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAFSQ 191

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.6 bits (173), Expect = 8e-15
 Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 21/200 (10%)

Query: 8   SPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAT 67
             +C+ +         +VT            IPS L    +   L     +L   I    
Sbjct: 4   HRICHCSNRVFLCQESKVT-----------EIPSDL--PRNAIELRFVLTKLR-VIQKGA 49

Query: 68  FIT-HTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLS-YNALSGEIPANICSNLPFLEY 124
           F     L+ +++  N +     + +F+    L ++ +   N L   I      NLP L+Y
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY 108

Query: 125 ISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI--GNVTKLKELYLVRNRLQG 182
           + +S                   +L +  N     I +    G   +   L+L +N +Q 
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167

Query: 183 EIPRELSNLAELELMSLFDN 202
           EI     N  +L+ ++L DN
Sbjct: 168 EIHNSAFNGTQLDELNLSDN 187

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 11/139 (7%)

Query: 20  VHSHRVTVFNVSGLNLTGTIPSQL--GNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYV 76
           +HS +  + ++       TI      G       L L+ N +   I ++ F  T   +  
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELN 183

Query: 77  DLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG 135
               N L    P+ +F+  S    LD+S   +   +P+    NL  L   S         
Sbjct: 184 LSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL---KK 238

Query: 136 IPSALSKCTYLQILGLSFN 154
           +P+ L K   L    L++ 
Sbjct: 239 LPT-LEKLVALMEASLTYP 256

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 7/158 (4%)

Query: 51  SLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGE 110
           +       L   +P    +   + YVDL  N ++    +       LQ L +        
Sbjct: 14  NAICINRGLH-QVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV 69

Query: 111 IPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF-SGAIPKEI-GNVT 168
           I  N    L  L  + L  N F      A +    L++L L+  +     +       +T
Sbjct: 70  IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129

Query: 169 KLKELYLVRNRLQGEIPREL-SNLAELELMSLFDNELQ 205
            L+ L L  N ++   P     N+    ++ L  N+++
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 37/181 (20%), Positives = 58/181 (32%), Gaps = 17/181 (9%)

Query: 40  PSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNK-SSL 97
            +    L  LQ L +        I + TF   + L  + L  NQ      +  FN  ++L
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANL 105

Query: 98  QDLDLSYNAL-SGEIPANICSNLPFLEYISLSQNMFHGGIPSAL-SKCTYLQILGLSFND 155
           + L L+   L    +  N    L  LE + L  N      P++         +L L+FN 
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

Query: 156 FSGAIPKEI---GNVTKLKELYLVRNRLQ--------GEIPRELSNLAELELMSLFDNEL 204
              +I +E            L L    LQ         E          +  + L  N  
Sbjct: 166 VK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 205 Q 205
           +
Sbjct: 225 K 225

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.9 bits (161), Expect = 5e-13
 Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 11/164 (6%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFI---THTLKYVDLRGNQLSGAFPSFIFNK-SSLQDL 100
           + S     +           + TF       +K  DL  +++  A    +F+  + L+ L
Sbjct: 247 SNSYNMGSSFGHTNFK-DPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQL 304

Query: 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI 160
            L+ N ++ +I  N    L  L  ++LSQN               L++L LS+N    A+
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-AL 362

Query: 161 PKEI-GNVTKLKELYLVRNRLQGEIPRE-LSNLAELELMSLFDN 202
             +    +  LKEL L  N+L+  +P      L  L+ + L  N
Sbjct: 363 GDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 16/195 (8%)

Query: 26  TVFNVSGLNLTGTIPSQL-GNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQL 83
               V        I +     LSSL  L L +N+    + +  F     L+ + L    L
Sbjct: 57  QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNL 115

Query: 84  SGAF-PSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN--------MFH 133
            GA      F   +SL+ L L  N +    PA+   N+     + L+ N           
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175

Query: 134 GGIPSALSKC--TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSN- 190
                  +    + + +  ++               T +  L L  N  +  + +   + 
Sbjct: 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235

Query: 191 LAELELMSLFDNELQ 205
           +A  ++ SL  +   
Sbjct: 236 IAGTKIQSLILSNSY 250

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFIT-HTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDL 102
            L+ L  LNLS N L  SI S  F     L+ +DL  N +  A     F    +L++L L
Sbjct: 321 GLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELAL 378

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFH 133
             N L   +P  I   L  L+ I L  N + 
Sbjct: 379 DTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 40/176 (22%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATF-ITHTLKYVDLRGNQLSGAFPSFIFNK--------- 94
             +S+ +L+LS N    S+    F      K   L  +       SF             
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 95  -----SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQIL 149
                S ++  DLS + +   +  ++ S+   LE ++L+QN                +I 
Sbjct: 270 KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQN----------------EIN 312

Query: 150 GLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            +  N F G        +T L +L L +N L     R   NL +LE++ L  N ++
Sbjct: 313 KIDDNAFWG--------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 64.3 bits (157), Expect = 5e-13
 Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 45/195 (23%)

Query: 11  CNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT 70
           C  T V C            S   L   IP  +        L L+ N  +    +  F  
Sbjct: 11  CEGTTVDC------------SNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKK 55

Query: 71  HT-LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLS 128
              L+ ++   N+++       F   S + ++ L+ N L   +   +   L  L+ + L 
Sbjct: 56  LPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113

Query: 129 QNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE- 187
            N                +I  +  + F G        ++ ++ L L  N++   +    
Sbjct: 114 SN----------------RITCVGNDSFIG--------LSSVRLLSLYDNQIT-TVAPGA 148

Query: 188 LSNLAELELMSLFDN 202
              L  L  ++L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 27/132 (20%)

Query: 74  KYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133
             VD    +L+   P  I       +L L+ N  +      I   LP L  I+ S N   
Sbjct: 14  TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN--- 67

Query: 134 GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAE 193
                        +I  +    F GA        + + E+ L  NRL+    +    L  
Sbjct: 68  -------------KITDIEEGAFEGA--------SGVNEILLTSNRLENVQHKMFKGLES 106

Query: 194 LELMSLFDNELQ 205
           L+ + L  N + 
Sbjct: 107 LKTLMLRSNRIT 118

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.7 bits (157), Expect = 1e-12
 Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 11/165 (6%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100
             L NL +L  L L  N++   + S   +   LK + L  N +S    + + +   L+ L
Sbjct: 81  KPLTNLKNLGWLFLDENKIK-DLSSLKDLKK-LKSLSLEHNGISDI--NGLVHLPQLESL 136

Query: 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI 160
            L  N ++ +I     S L  L+ +SL  N         L+  T LQ L LS N  S   
Sbjct: 137 YLGNNKIT-DITVL--SRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS--D 189

Query: 161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            + +  +  L  L L       +     SNL     +   D  L 
Sbjct: 190 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 2e-12
 Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 25/185 (13%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
               N+   ++T  +      L+S+  +  + + +  S+    ++ + +  + L GN+L+
Sbjct: 23  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPN-VTKLFLNGNKLT 78

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP--SALSK 142
              P  + N  +L  L L  N +  ++ +    +L  L+ +SL  N    GI   + L  
Sbjct: 79  DIKP--LTNLKNLGWLFLDENKIK-DLSS--LKDLKKLKSLSLEHN----GISDINGLVH 129

Query: 143 CTYLQILGLSFN---DFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSL 199
              L+ L L  N   D +      +  +TKL  L L  N++  +I   L+ L +L+ + L
Sbjct: 130 LPQLESLYLGNNKITDITV-----LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYL 182

Query: 200 FDNEL 204
             N +
Sbjct: 183 SKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 2e-11
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 13/163 (7%)

Query: 43  LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102
           +  L ++  L L+ N+L+  I   T + + L ++ L  N++     S + +   L+ L L
Sbjct: 61  IQYLPNVTKLFLNGNKLT-DIKPLTNLKN-LGWLFLDENKIKDL--SSLKDLKKLKSLSL 116

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPK 162
            +N +S +I      +LP LE + L  N       + LS+ T L  L L  N  S  +P 
Sbjct: 117 EHNGIS-DING--LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP- 170

Query: 163 EIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            +  +TKL+ LYL +N +     R L+ L  L+++ LF  E  
Sbjct: 171 -LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 22/135 (16%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 73  LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
           +         +   FP      +     +L   +++  +     + L  ++ I  + +  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNS-- 53

Query: 133 HGGIPS--ALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSN 190
              I S   +     +  L L+ N  +   P  + N+  L  L+L  N+++ ++   L +
Sbjct: 54  --DIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKD 107

Query: 191 LAELELMSLFDNELQ 205
           L +L+ +SL  N + 
Sbjct: 108 LKKLKSLSLEHNGIS 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 44/195 (22%), Positives = 70/195 (35%), Gaps = 46/195 (23%)

Query: 11  CNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT 70
           C+   V C             G  LT  IP+ L    ++  + L  N +   IP   F  
Sbjct: 11  CSNNIVDC------------RGKGLT-EIPTNL--PETITEIRLEQNTIK-VIPPGAFSP 54

Query: 71  HT-LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLS 128
           +  L+ +DL  NQ+S       F    SL  L L  N ++ E+P ++   L  L+ + L+
Sbjct: 55  YKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLN 112

Query: 129 QNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRE 187
            N                +I           +  +   ++  L  L L  N+LQ      
Sbjct: 113 AN----------------KI---------NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 188 LSNLAELELMSLFDN 202
            S L  ++ M L  N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 28/130 (21%)

Query: 76  VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG 135
           VD RG  L+   P+ +    ++ ++ L  N +   IP    S    L  I LS N     
Sbjct: 16  VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNN----- 66

Query: 136 IPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELE 195
                      QI  L+ + F G           L  L L  N++          L  L+
Sbjct: 67  -----------QISELAPDAFQGL--------RSLNSLVLYGNKITELPKSLFEGLFSLQ 107

Query: 196 LMSLFDNELQ 205
           L+ L  N++ 
Sbjct: 108 LLLLNANKIN 117

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 13/192 (6%)

Query: 14  TGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTL 73
           TG TC   +      +  G +L  ++PS  G  +  + L+L    L+    +       L
Sbjct: 8   TGCTC---NEGKKEVDCQGKSLD-SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKL 61

Query: 74  KYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
            +++L  NQL     + +F+  + L  L L+ N L+  +P  +  +L  L+ + L  N  
Sbjct: 62  TWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL 119

Query: 133 HGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRE-LSN 190
                    + T L+ L L+ N    +IP      +T L+ L L  N+LQ  +P      
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDR 177

Query: 191 LAELELMSLFDN 202
           L +L+ ++LF N
Sbjct: 178 LGKLQTITLFGN 189

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 33/165 (20%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 40  PSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQD 99
                +L  + +L+     ++ +I    ++ + L  ++L+ NQ++    + + N + + +
Sbjct: 34  TVTQADLDGITTLSAFGTGVT-TIEGVQYLNN-LIGLELKDNQITD--LAPLKNLTKITE 89

Query: 100 LDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA 159
           L+LS N L   + A   + L  ++ + L+         + L+  + LQ+L L  N  +  
Sbjct: 90  LELSGNPLK-NVSAI--AGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI 144

Query: 160 IPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            P  +  +T L+ L +   ++    P  L+NL++L  +   DN++
Sbjct: 145 SP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100
             +  L++L  L L  N+++  +     +T  +  ++L GN L       I    S++ L
Sbjct: 57  EGVQYLNNLIGLELKDNQIT-DLAPLKNLTK-ITELELSGNPLKNVSA--IAGLQSIKTL 112

Query: 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI 160
           DL+   ++   P    + L  L+ + L  N       S L+  T LQ L +     S   
Sbjct: 113 DLTSTQITDVTP---LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT 167

Query: 161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
           P  + N++KL  L    N++  +I   L++L  L  + L +N++
Sbjct: 168 P--LANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 11/164 (6%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100
           S +  L S+++L+L+  +++   P A      L+ + L  NQ++    S +   ++LQ L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSN--LQVLYLDLNQITNI--SPLAGLTNLQYL 156

Query: 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI 160
            +    +S   P    +NL  L  +    N       S L+    L  + L  N  S   
Sbjct: 157 SIGNAQVSDLTP---LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS 211

Query: 161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
           P  + N + L  + L    +  +     +NL    ++       
Sbjct: 212 P--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100
           + L NL+ +  L LS N L  ++ +   +   +K +DL   Q++    + +   S+LQ L
Sbjct: 79  APLKNLTKITELELSGNPLK-NVSAIAGLQS-IKTLDLTSTQITD--VTPLAGLSNLQVL 134

Query: 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI 160
            L  N ++  I     + L  L+Y+S+          + L+  + L  L    N  S   
Sbjct: 135 YLDLNQIT-NISPL--AGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISDIS 189

Query: 161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           P  + ++  L E++L  N++    P  L+N + L +++L +  + 
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 27/162 (16%), Positives = 68/162 (41%), Gaps = 13/162 (8%)

Query: 43  LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102
              L++   +    + ++ ++  A      +  +   G  ++      +   ++L  L+L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPK 162
             N ++ ++      NL  +  + LS N       SA++    ++ L L+    +   P 
Sbjct: 71  KDNQIT-DLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 163 EIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            +  ++ L+ LYL  N++   I   L+ L  L+ +S+ + ++
Sbjct: 125 -LAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQV 163

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 9e-12
 Identities = 33/185 (17%), Positives = 74/185 (40%), Gaps = 5/185 (2%)

Query: 23  HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ 82
             + + +V       +  +     + +    LS +              +  +++   N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 83  LSGAFPSFIFNKSSLQDLDLSYNAL-SGEIPANICSNLPFLEYISLSQNMFHGGIPSAL- 140
            + +          LQ L L  N L +    A +  N+  LE + +S N  +        
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 141 SKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLF 200
           +    + +L LS N  +G++ + +    K+K L L  NR+   IP+++++L  L+ +++ 
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481

Query: 201 DNELQ 205
            N+L+
Sbjct: 482 SNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 14/215 (6%)

Query: 2   KNWNTSSPVCNWTGVTCDVHS---HRVTVFNVSGLNLTGTIP-----SQLGNLSSLQSLN 53
            N         W              V   N+  L +T  I           L SL   +
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311

Query: 54  LSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPA 113
           +       S  +   +   +    L  +           + SS   L+ + N  + +   
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVF 370

Query: 114 NICSNLPFLEYISLSQNMFH--GGIPSALSKCTYLQILGLSFNDF-SGAIPKEIGNVTKL 170
             CS L  L+ + L +N       +       + L+ L +S N   S A  +       +
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 171 KELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
             L L  N L G + R L    +++++ L +N + 
Sbjct: 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 46  LSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN 105
             S+  LNLS N L+GS+     +   +K +DL  N++  + P  + +  +LQ+L+++ N
Sbjct: 427 AESILVLNLSSNMLTGSVFRC--LPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483

Query: 106 ALSGEIPANICSNLPFLEYISLSQNMFH 133
            L   +P  +   L  L+YI L  N + 
Sbjct: 484 QLK-SVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 5/166 (3%)

Query: 40  PSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNKSSLQ 98
              +  LS L+ L LS NR+  S+    F+ +  L+Y+D+  N+L           +SL+
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPM--ASLR 124

Query: 99  DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSG 158
            LDLS+N            NL  L ++ LS   F       ++      IL    +    
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184

Query: 159 AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
               E   +     L+LV +       +   ++  L  + L + +L
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 5/118 (4%)

Query: 44  GNLSSLQSLNLSFNRLSGSIPSATFITH--TLKYVDLRGNQL-SGAFPSFIFNKSSLQDL 100
             ++SL+ L+LSFN     +P      +   L ++ L   +              S   L
Sbjct: 118 CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176

Query: 101 DLSYNALSGEIPANICS-NLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157
           DL    + G    ++   N   L  +    ++F   +  +++   +LQ+  +  ND +
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 19/206 (9%)

Query: 17  TCDVHSHRVTVF-----NVSGLNLTG----TIPSQ-LGNLSSLQSLNLSFNRLSGSIPSA 66
              V    +        +   L L      TIPS    NL ++  + +S +     + S 
Sbjct: 15  DFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH 74

Query: 67  TFI-THTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPA-NICSNLPFLE 123
           +F     + ++++R  +           +   L+ L +    L    P      +     
Sbjct: 75  SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFF 133

Query: 124 YISLSQNMFHGGIPSAL--SKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181
            + ++ N +   IP       C     L L  N F+ ++     N TKL  +YL +N+  
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYL 192

Query: 182 GEIPRE-LSNLAE-LELMSLFDNELQ 205
             I ++    +     L+ +    + 
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 7e-09
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 18/168 (10%)

Query: 47  SSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQL----SGAFPSFIFNKSSLQDLDL 102
              +   ++   +   IPS   +  + + + L    L    S AF +      ++  + +
Sbjct: 11  HQEEDFRVTCKDIQ-RIPS---LPPSTQTLKLIETHLRTIPSHAFSNL----PNISRIYV 62

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS-ALSKCTYLQILGLSFNDFSGAIP 161
           S +    ++ ++   NL  + +I +        I   AL +   L+ LG+         P
Sbjct: 63  SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFP 121

Query: 162 KE--IGNVTKLKELYLVRNRLQGEIPRE-LSNL-AELELMSLFDNELQ 205
               + +      L +  N     IP      L  E   + L++N   
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 4/112 (3%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATF--ITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ 98
           +++ +      L ++ N    SIP   F  + +    + L  N  + +   + FN + L 
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD 182

Query: 99  DLDLSYNALSGEIPANICSNLP-FLEYISLSQNMFHGGIPSALSKCTYLQIL 149
            + L+ N     I  +    +      + +SQ          L     L   
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 21/169 (12%)

Query: 45  NLSSLQSLNLSFNRLS--GSIPSATFITHTLKYVDLRGNQLS--GAFPSFIFNKSSLQDL 100
            L+S+  +  + + +     I         ++Y+ L GN+L    A        ++L  L
Sbjct: 39  ELNSIDQIIANNSDIKSVQGIQYLP----NVRYLALGGNKLHDISALKEL----TNLTYL 90

Query: 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFH---GGIPSALSKCTYLQILGLSFNDFS 157
            L+ N L   +P  +   L  L+ + L +N       G+   L   T L  L L+ N   
Sbjct: 91  ILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL---TNLTYLNLAHNQLQ 146

Query: 158 GAIPKEIGNVTKLKELYLVRNRLQGEIPREL-SNLAELELMSLFDNELQ 205
                    +T L EL L  N+LQ  +P  +   L +L+ + L+ N+L+
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 32/170 (18%), Positives = 52/170 (30%), Gaps = 29/170 (17%)

Query: 43  LGNLSSLQSLNLSFNRLS--GSIPSATFITH--TLKYVDLRGNQLS-------------G 85
           L     L ++ LS N        P   F++    L+++ L  N L               
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL---PFLEYISLSQNMFH-----GGIP 137
           A      N   L+ +    N L                 L  + + QN          + 
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 138 SALSKCTYLQILGLSFNDFSG----AIPKEIGNVTKLKELYLVRNRLQGE 183
             L+ C  L++L L  N F+     A+   + +   L+EL L    L   
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 33/198 (16%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI------THTLKYVDLRGNQL-----SGA 86
            +  +  N   L+S+    NRL     S             L  V +  N +        
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLEN--GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 87  FPSFIFNKSSLQDLDLSYNALSGEIPANICSNL---PFLEYISLSQNMFHG----GIPSA 139
               +     L+ LDL  N  +    + +   L   P L  + L+  +        +  A
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 140 LSKC--TYLQILGLSFNDFSGAIPKEIG-----NVTKLKELYLVRNRL--QGEIPRE--- 187
            SK     LQ L L +N+      + +       +  L  L L  NR   + ++  E   
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327

Query: 188 -LSNLAELELMSLFDNEL 204
             S     EL  L D E 
Sbjct: 328 VFSTRGRGELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 28/150 (18%)

Query: 43  LGNLSSLQSLNLSFNRLSG----SIPSATFITHTLKYVDLRGNQLSG----AFPSFIFNK 94
           +   S ++  +L  + ++     S+ +      ++K + L GN +           I +K
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 95  SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFN 154
             L+  + S     G +   I   L                +  AL KC  L  + LS N
Sbjct: 60  KDLEIAEFSDIFT-GRVKDEIPEAL--------------RLLLQALLKCPKLHTVRLSDN 104

Query: 155 DFSGAIPKEIGNV----TKLKELYLVRNRL 180
            F     + + +     T L+ LYL  N L
Sbjct: 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 11/164 (6%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100
             L NL +L  L L  N++   + S   +   LK + L  N +S    + + +   L+ L
Sbjct: 84  KPLANLKNLGWLFLDENKVK-DLSSLKDLKK-LKSLSLEHNGISDI--NGLVHLPQLESL 139

Query: 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI 160
            L  N ++ +I     S L  L+ +SL  N         L+  T LQ L LS N  S   
Sbjct: 140 YLGNNKIT-DITVL--SRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDL- 193

Query: 161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            + +  +  L  L L       +     SNL     +   D  L
Sbjct: 194 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 19/182 (10%)

Query: 25  VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS 84
               N+   ++T  +      L+S+  +  + + +  S+    ++ + +  + L GN+L+
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPN-VTKLFLNGNKLT 81

Query: 85  GAFPSFIFNKSSLQDLDLSYNALSGEIPANIC--SNLPFLEYISLSQNMFHGGIPSALSK 142
              P  + N  +L  L L  N +      ++    +L  L+ +SL  N       + L  
Sbjct: 82  DIKP--LANLKNLGWLFLDENKVK-----DLSSLKDLKKLKSLSLEHNGIS--DINGLVH 132

Query: 143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
              L+ L L  N  +      +  +TKL  L L  N++  +I   L+ L +L+ + L  N
Sbjct: 133 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKN 188

Query: 203 EL 204
            +
Sbjct: 189 HI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 43  LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102
           +  L ++  L L+ N+L+  I     + + L ++ L  N++     S + +   L+ L L
Sbjct: 64  IQYLPNVTKLFLNGNKLT-DIKPLANLKN-LGWLFLDENKVKDL--SSLKDLKKLKSLSL 119

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPK 162
            +N +S +I      +LP LE + L  N       + LS+ T L  L L  N  S  +P 
Sbjct: 120 EHNGIS-DING--LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP- 173

Query: 163 EIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
            +  +TKL+ LYL +N +  ++ R L+ L  L+++ LF  E  
Sbjct: 174 -LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 13/112 (11%)

Query: 95  SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS--ALSKCTYLQILGLS 152
           +     +L   +++  +     + L  ++ I  + +     I S   +     +  L L+
Sbjct: 24  AETIKDNLKKKSVTDAVT---QNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFLN 76

Query: 153 FNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            N  +   P  + N+  L  L+L  N+++ ++   L +L +L+ +SL  N +
Sbjct: 77  GNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGI 124

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 45/194 (23%)

Query: 11  CNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT 70
           C+ T V C   S R             ++P+  G  ++ Q L L  N+++  +    F +
Sbjct: 19  CSGTTVDC--RSKRHA-----------SVPA--GIPTNAQILYLHDNQIT-KLEPGVFDS 62

Query: 71  HT-LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLS 128
              LK + L  NQL  A P  +F+  + L  LDL  N L+                  L 
Sbjct: 63  LINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-----------------VLP 104

Query: 129 QNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPREL 188
             +F         +  +L+ L +  N  +  +P+ I  +T L  L L +N+L+       
Sbjct: 105 SAVFD--------RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155

Query: 189 SNLAELELMSLFDN 202
             L+ L    LF N
Sbjct: 156 DRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 8e-08
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 13/134 (9%)

Query: 76  VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH-- 133
           VD R  + + + P+ I   ++ Q L L  N ++ ++   +  +L  L+ + L  N     
Sbjct: 24  VDCRSKRHA-SVPAGI--PTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGAL 79

Query: 134 -GGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRELSNL 191
             G+  +L   T L +L L  N  +  +P  +   +  LKEL++  N+L  E+PR +  L
Sbjct: 80  PVGVFDSL---TQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL 134

Query: 192 AELELMSLFDNELQ 205
             L  ++L  N+L+
Sbjct: 135 THLTHLALDQNQLK 148

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 1e-09
 Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
            L    P +   L  L+S  L  N +             ++ + L    L+      +  
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVL------KMEYADVRVLHLAHKDLTV--LCHLEQ 461

Query: 94  KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS--ALSKCTYLQILGL 151
              +  LDLS+N L   +P  + + L  LE +  S N     + +   ++    LQ L L
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNA----LENVDGVANLPRLQELLL 515

Query: 152 SFNDFSG-AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAEL 194
             N     A  + + +  +L  L L  N L  +       LAE+
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 24  RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQL 83
            VT  ++S   L   +P  L  L  L+ L  S N L  ++     +   L+ + L  N+L
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPR-LQELLLCNNRL 520

Query: 84  SGAFPSF--IFNKSSLQDLDLSYNALSGEIP--ANICSNLPFLEYI 125
                +   + +   L  L+L  N+L  E      +   LP +  I
Sbjct: 521 QQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 5/128 (3%)

Query: 3   NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS 62
             +              +    V V +++  +LT  +   L  L  +  L+LS NRL  +
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-A 477

Query: 63  IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL 122
           +P A      L+ +    N L             LQ+L L  N L          + P L
Sbjct: 478 LPPALAALRCLEVLQASDNALE-NVDGVANLP-RLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 123 EYISLSQN 130
             ++L  N
Sbjct: 536 VLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 28/185 (15%), Positives = 56/185 (30%), Gaps = 24/185 (12%)

Query: 40  PSQLGNLSSLQSLNLSFNRLSG------------SIPSATFITHTLKYVDLRGNQLSGAF 87
                    L    LS  + +              +            + +R        
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 401

Query: 88  PSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL-------EYISLSQNMFHGGIPSAL 140
              +   S+L+ +D    A   ++ +        L         + L+       +   L
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHL 459

Query: 141 SKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLF 200
            +   +  L LS N    A+P  +  +  L+ L    N L+  +   ++NL  L+ + L 
Sbjct: 460 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLC 516

Query: 201 DNELQ 205
           +N LQ
Sbjct: 517 NNRLQ 521

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 30/190 (15%)

Query: 43  LGNLSSLQSLNLSFNRLSGSIPSATFITH-------TLKYVDLRGNQLS----GAFPSFI 91
           L    +L  LNL  N L         +          ++ + L+   L+    G   S +
Sbjct: 52  LRVNPALAELNLRSNELGDV--GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109

Query: 92  FNKSSLQDLDLSYNALSGEIPANICSNL----PFLEYISLSQNMFH----GGIPSALSKC 143
               +LQ+L LS N L       +C  L      LE + L            + S L   
Sbjct: 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169

Query: 144 TYLQILGLSFNDFSGAIPKEIG-----NVTKLKELYLVRNRLQGE----IPRELSNLAEL 194
              + L +S ND + A  + +      +  +L+ L L    +  +    +   +++ A L
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 195 ELMSLFDNEL 204
             ++L  N+L
Sbjct: 230 RELALGSNKL 239

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 34/177 (19%), Positives = 58/177 (32%), Gaps = 25/177 (14%)

Query: 47  SSLQSLNLSFNRLS-GSIPSATFITHTLKYVDLRGNQLS----GAFPSFIFNKSSLQDLD 101
             +QSL++    LS         +    + V L    L+        S +    +L +L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 102 LSYNALSGEIPANICSNLPF----LEYISLSQNMFH----GGIPSALSKCTYLQILGLSF 153
           L  N L       +   L      ++ +SL          G + S L     LQ L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 154 NDFSGAIPKEIG-----NVTKLKELYLVRNRLQGEIPRELS-------NLAELELMS 198
           N    A  + +         +L++L L    L       L+       +  EL + +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 22/160 (13%)

Query: 43  LGNLSSLQSLNLSFNRL--SGSIPSATFITH---TLKYVDLRGNQLS----GAFPSFIFN 93
           + + +SL+ L L  N+L   G       + H    L+ + +    ++    G     +  
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 94  KSSLQDLDLSYNALSGEIPANICSNLPF----LEYISLSQNMFHG----GIPSALSKCTY 145
           K SL++L L+ N L  E    +C  L      LE + +    F         S L++  +
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 146 LQILGLSFNDFSGAIPKEIGNV-----TKLKELYLVRNRL 180
           L  L +S N    A  +E+        + L+ L+L    +
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 30/195 (15%)

Query: 39  IPSQLGNLSSLQSLNLSFNRLSGSIPSATFITH-------TLKYVDLRGNQLSGAFPSFI 91
           + S L  L +LQ L+LS N L  +      +          L+ + L    LS A    +
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDA--GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162

Query: 92  F----NKSSLQDLDLSYNALSGEIPANICSNLPF----LEYISLSQNMFH----GGIPSA 139
                 K   ++L +S N ++      +C  L      LE + L            +   
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222

Query: 140 LSKCTYLQILGLSFNDFSGAIPKEIGNV-----TKLKELYLVRNRLQGE----IPRELSN 190
           ++    L+ L L  N        E+        ++L+ L++    +  +    + R L  
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 191 LAELELMSLFDNELQ 205
              L+ +SL  NEL 
Sbjct: 283 KESLKELSLAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 22/173 (12%)

Query: 43  LGNLSSLQSLNLSFNRLSGS-----IPSATFITHTLKYVDLRGNQLSG----AFPSFIFN 93
           L    SL+ L+L+ N L          +       L+ + ++    +      F S +  
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 94  KSSLQDLDLSYNALSGEIPANIC----SNLPFLEYISLSQNMFH----GGIPSALSKCTY 145
              L +L +S N L       +C         L  + L+           + + L     
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399

Query: 146 LQILGLSFNDFSGAIPKEIG-----NVTKLKELYLVRNRLQGEIPRELSNLAE 193
           L+ L LS N    A   ++          L++L L       E+   L  L +
Sbjct: 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 36/162 (22%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 43  LGNLSSLQSLNLSFNRLS----GSIPSATFITHTLKYVDLRGNQLSGA-----FPSFIFN 93
           L  L   Q + L    L+      I SA  +   L  ++LR N+L               
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 94  KSSLQDLDLSYNALSGEIPANICSNL---PFLEYISLSQNMFHGGIPSALSK-----CTY 145
              +Q L L    L+G     + S L   P L+ + LS N+        L +        
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 146 LQILGLSFNDFSGAIPKEIGNV----TKLKELYLVRNRLQGE 183
           L+ L L +   S A  + + +V       KEL +  N +   
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 13/124 (10%)

Query: 95  SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH----GGIPSALSKCTYLQILG 150
             +Q LD+    LS    A +   L   + + L            I SAL     L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 151 LSFNDFSGAIPKEIGNV-----TKLKELYLVRNRLQGE----IPRELSNLAELELMSLFD 201
           L  N+        +         K+++L L    L G     +   L  L  L+ + L D
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 202 NELQ 205
           N L 
Sbjct: 123 NLLG 126

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 17/124 (13%)

Query: 43  LGNLSSLQSLNLSFNRL--SGSIPSATFITH---TLKYVDLRGNQLS----GAFPSFIFN 93
           L     L  L +S NRL  +G       +      L+ + L    +S     +  + +  
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 94  KSSLQDLDLSYNALSGEIPANICSNL----PFLEYISLSQNMF----HGGIPSALSKCTY 145
             SL++LDLS N L       +  ++      LE + L    +       + +       
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPS 456

Query: 146 LQIL 149
           L+++
Sbjct: 457 LRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 13/128 (10%)

Query: 69  ITHTLKYVDLRGNQLS-GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL---PFLEY 124
           ++  ++ +D++  +LS   +   +      Q + L    L+     +I S L   P L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 125 ISLSQNMFHGGIPSALSKC-----TYLQILGLSFNDFS----GAIPKEIGNVTKLKELYL 175
           ++L  N         + +        +Q L L     +    G +   +  +  L+EL+L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 176 VRNRLQGE 183
             N L   
Sbjct: 121 SDNLLGDA 128

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 32/182 (17%), Positives = 69/182 (37%), Gaps = 22/182 (12%)

Query: 24  RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQL 83
            +T  +    ++T    + +  L+ L  L  + N ++ ++  +      L Y+    N+L
Sbjct: 43  TLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT-TLDLSQNTN--LTYLACDSNKL 97

Query: 84  SGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSK 142
           +    +      + L  L+   N L+ ++     S  P L Y++ ++N     I   +S 
Sbjct: 98  T----NLDVTPLTKLTYLNCDTNKLT-KLDV---SQNPLLTYLNCARNTLTE-ID--VSH 146

Query: 143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202
            T L  L    N     +   +   T+L  L    N++      ++S    L  ++   N
Sbjct: 147 NTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTN 201

Query: 203 EL 204
            +
Sbjct: 202 NI 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 27/174 (15%), Positives = 65/174 (37%), Gaps = 17/174 (9%)

Query: 31  SGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSF 90
           +   +  T       L++L SL+   + ++  +     +T  L  +    N ++      
Sbjct: 26  AAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTG-LTKLICTSNNIT-TLD-- 80

Query: 91  IFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILG 150
           +   ++L  L    N L+  +     + L  L Y++   N         +S+   L  L 
Sbjct: 81  LSQNTNLTYLACDSNKLT-NLDV---TPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLN 133

Query: 151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            + N  +     ++ + T+L EL    N+   ++   ++   +L  +    N++
Sbjct: 134 CARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 33/196 (16%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
           T  +         +   +   + L +L+ SFN+++  +  +      L  ++   N ++ 
Sbjct: 151 TELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELDVSQNK--LLNRLNCDTNNIT- 204

Query: 86  AFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT 144
                  N+   L  LD S N L+ EI     + L  L Y   S N       S LSK T
Sbjct: 205 ---KLDLNQNIQLTFLDCSSNKLT-EIDV---TPLTQLTYFDCSVNPLTELDVSTLSKLT 257

Query: 145 YL----------------QILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPREL 188
            L                Q++             ++ + T+L  L      +  E+   L
Sbjct: 258 TLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--L 314

Query: 189 SNLAELELMSLFDNEL 204
           S   +L  + L + EL
Sbjct: 315 SQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 20/180 (11%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
           T  + S   LT  I   +  L+ L   + S N L+  +  +T     L  +      L  
Sbjct: 215 TFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVSTL--SKLTTLHCIQTDLLE 268

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
              +   + + L            E+     ++   L  +              LS+   
Sbjct: 269 IDLT---HNTQLIYFQAEGCRKIKELDV---THNTQLYLLDCQAAGIT---ELDLSQNPK 319

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           L  L L+  + +  +   + + TKLK L  V   +Q +    +  +  L      + +  
Sbjct: 320 LVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 17/174 (9%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG 85
           T F+ S   LT  +   +  LS L +L+     L   I     +TH  + +  +      
Sbjct: 236 TYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID----LTHNTQLIYFQAEGCRK 287

Query: 86  AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145
                + + + L  LD     ++ E+     S  P L Y+ L+       +   +S  T 
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGIT-ELDL---SQNPKLVYLYLNNTELTE-LD--VSHNTK 340

Query: 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSL 199
           L+ L              +G +  L   +    +        L+N +    +S 
Sbjct: 341 LKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 14/164 (8%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100
                LS +Q+ N   + +  S+    F T+ LK + L  NQ+S    S + + + L++L
Sbjct: 35  VSQKELSGVQNFNGDNSNIQ-SLAGMQFFTN-LKELHLSHNQISD--LSPLKDLTKLEEL 90

Query: 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI 160
            ++ N L   +          L  + L  N        +L     L+IL +  N     +
Sbjct: 91  SVNRNRLK-NLNG---IPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSIV 144

Query: 161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
              +G ++KL+ L L  N +       L+ L ++  + L   + 
Sbjct: 145 M--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 12/162 (7%)

Query: 43  LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102
           +   ++L+ L+LS N++S  +     +T  L+ + +  N+L           + L  L L
Sbjct: 59  MQFFTNLKELHLSHNQIS-DLSPLKDLTK-LEELSVNRNRLKNLNG---IPSACLSRLFL 113

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPK 162
             N L          +L  LE +S+  N         L   + L++L L  N+ +     
Sbjct: 114 DNNELRDTDSL---IHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTGG- 167

Query: 163 EIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            +  + K+  + L   +   E  +    L     +   D   
Sbjct: 168 -LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 30/167 (17%), Positives = 69/167 (41%), Gaps = 18/167 (10%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100
                L++    NL    ++  +         ++  +   + +       +   ++L++L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKEL--SGVQNFNGDNSNIQSLAG--MQFFTNLKEL 68

Query: 101 DLSYNALSGEIPANIC--SNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSG 158
            LS+N +S     ++    +L  LE +S+++N       + +     L  L L  N+   
Sbjct: 69  HLSHNQIS-----DLSPLKDLTKLEELSVNRNRLK--NLNGIPSAC-LSRLFLDNNELRD 120

Query: 159 AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
                + ++  L+ L +  N+L+  I   L  L++LE++ L  NE+ 
Sbjct: 121 TDS--LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT 163

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAFPSFIF 92
           N    +P +L N   L  ++LS NR+S ++ + +F   T L  + L  N+L    P   F
Sbjct: 41  NQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-CIPPRTF 98

Query: 93  NK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
           +   SL+ L L  N +S  +P    ++L  L ++++  N
Sbjct: 99  DGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 110 EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTK 169
            +P  I  ++  L    L  N F   +P  LS   +L ++ LS N  S    +   N+T+
Sbjct: 24  VLPKGIPRDVTELY---LDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79

Query: 170 LKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
           L  L L  NRL+   PR    L  L L+SL  N++ 
Sbjct: 80  LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.5 bits (121), Expect = 9e-08
 Identities = 28/186 (15%), Positives = 60/186 (32%), Gaps = 28/186 (15%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFIT---HTLKYVDLRGNQLSGA-----FPSFIFNKSS 96
              +L  +NL+  +L  +      +       + + L+ N L            + ++  
Sbjct: 99  GRHALDEVNLASCQLDPA--GLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQ 156

Query: 97  LQDLDLSYNALSGEIPANICSNL---PFLEYISLSQNMF--HGG--IPSALSKCTYLQIL 149
           +  L LS N L+    A +   L     + ++SL        G   + + L +   LQ L
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216

Query: 150 GLSFNDFSGAIPKEIGNV----TKLKELYLVRNRLQ-------GEIPRELSNLAELELMS 198
            +++N         +         L+ L+L  N L         ++       A + +  
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSL 276

Query: 199 LFDNEL 204
                +
Sbjct: 277 TEGTAV 282

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 15/155 (9%)

Query: 44  GNLSSLQSLNLSFNRL-SGSIPSATFITHTLKYVDLRGNQLSGAFPSFI-----FNKSSL 97
             L   + L+  F      +   +  +  +L+ ++L G +++    + +       + +L
Sbjct: 44  QVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHAL 103

Query: 98  QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG----IPSAL-SKCTYLQILGLS 152
            +++L+   L       +         + L  N         +   L      +  L LS
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS 163

Query: 153 FNDFSGAIPKEIGNV----TKLKELYLVRNRLQGE 183
            N  + A    +       T +  L L+   L  E
Sbjct: 164 NNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE 198

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 38  TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFI-THTLKYVDLRGNQLSGAFPSFIFNK-S 95
                L    +L  L +   +    +          L+ + +  + L        F+   
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 96  SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133
            L  L+LS+NAL   +       L  L+ + LS N  H
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 3/101 (2%)

Query: 57  NRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF-NKSSLQDLDLSYNALSGEIPANI 115
              +            L  + +   Q               L++L +  + L   +  + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA 75

Query: 116 CSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF 156
               P L  ++LS N         +   + LQ L LS N  
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 95  SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFN 154
            +L +L +        +       L  L  +++ ++      P A      L  L LSFN
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 155 DFSGAIPKEIGNVTKLKELYLVRNRLQ 181
               ++  +      L+EL L  N L 
Sbjct: 91  ALE-SLSWKTVQGLSLQELVLSGNPLH 116

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 31/165 (18%), Positives = 50/165 (30%), Gaps = 24/165 (14%)

Query: 43  LGNLSSLQSLNLSFNRLSGSIPSA-----TFITHTLKYVDLRGNQLSGA-----FPSFIF 92
                 + SL+LS N L                 ++  ++L GN L              
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 93  NKSSLQDLDLSYNALSGEIPANICSNLPF----LEYISLSQNMF----HGGIPSALSKC- 143
             +++  L+LS N LS +    +   L      +  + L  N F          A S   
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 144 TYLQILGLSFNDFSGAIPKEIGNV-----TKLKELYLVRNRLQGE 183
             +  L L  ND       E+  +       +  L L  N L  +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 30/163 (18%), Positives = 53/163 (32%), Gaps = 24/163 (14%)

Query: 45  NLSSLQSLNLSFNRLS----GSIPSA-TFITHTLKYVDLRGNQLSGA-----FPSFIFNK 94
             +S+ SLNLS N L       +      I   +  ++L GN LS         +     
Sbjct: 49  TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108

Query: 95  SSLQDLDLSYNALSGEIPANICSNLPF----LEYISLSQNMFHG----GIPSALSKC-TY 145
            ++  LDL +N  S +  +            +  ++L  N         +   L+     
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 146 LQILGLSFNDFSGAIPKEIGNV-----TKLKELYLVRNRLQGE 183
           +  L L  N+ +     E+          +  L L  N L  +
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 19/152 (12%)

Query: 51  SLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGA-----FPSFIFNKSSLQDLDLSYN 105
           +  L+ +  S  +   T I H +  +DL  N L          +F    +S+  L+LS N
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 106 ALSGEIPANICSNLPF----LEYISLSQNMFHG----GIPSALSKC-TYLQILGLSFNDF 156
           +L  +    +   L      +  ++LS N         +   L+     + +L L +NDF
Sbjct: 62  SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 157 SGAIPKEIGNV-----TKLKELYLVRNRLQGE 183
           S     E           +  L L  N L  +
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIK 153

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 24/180 (13%)

Query: 47  SSLQSLNLSFNRLSGSIPSATFIT-------HTLKYVDLRGNQL--SGAFP---SFIFNK 94
           +++ SLNL  N L+    +   +         ++  +DL  N L           F    
Sbjct: 167 ANVNSLNLRGNNLASK--NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224

Query: 95  SSLQDLDLSYNALSGEIPANICS---NLPFLEYISLSQNMFHG-------GIPSALSKCT 144
           + +  L+L  N L G    N+     +L  L+ + L  ++           + +A     
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284

Query: 145 YLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
            + ++  +  +   +    I N+ +          L  +                  +EL
Sbjct: 285 KIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 7/143 (4%)

Query: 62  SIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF 121
           S+P+   I     Y+DL  N L           +SL  L L  N L   +P  + + L  
Sbjct: 21  SVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRL 180
           L Y++LS N           K T L+ L L+ N    ++P  +   +T+LK+L L +N+L
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

Query: 181 QGEIPRE-LSNLAELELMSLFDN 202
           +  +P      L  L+ + L DN
Sbjct: 137 KS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 14/131 (10%)

Query: 11  CNWTGVTCDVHSH---------RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSG 61
           C+ T V C              + T  ++   +L          L+SL  L L  N+L  
Sbjct: 7   CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ- 65

Query: 62  SIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNL 119
           S+P+  F   T L Y++L  NQL  + P+ +F+K + L++L L+ N L   +P  +   L
Sbjct: 66  SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKL 123

Query: 120 PFLEYISLSQN 130
             L+ + L QN
Sbjct: 124 TQLKDLRLYQN 134

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 46  LSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLS 103
           L+SL  LNLS N+L  S+P+  F   T LK + L  NQL  + P  +F+K + L+DL L 
Sbjct: 75  LTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLY 132

Query: 104 YNALSGEIPANICSNLPFLEYISLSQN 130
            N L   +P  +   L  L+YI L  N
Sbjct: 133 QNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 76  VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG 135
           V+      + + P+ I   +    LDL  N+L   +P  +   L  L  + L  N     
Sbjct: 12  VECYSQGRT-SVPTGIP--AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 136 IPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPREL-SNLAEL 194
                +K T L  L LS N            +T+LKEL L  N+LQ  +P  +   L +L
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQL 126

Query: 195 ELMSLFDNELQ 205
           + + L+ N+L+
Sbjct: 127 KDLRLYQNQLK 137

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 11/117 (9%)

Query: 93  NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS--ALSKCTYLQILG 150
           N    ++LDL    +   +  N+ + L   + I  S N     I           L+ L 
Sbjct: 17  NAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLL 70

Query: 151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ--GEIPRELSNLAELELMSLFDNELQ 205
           ++ N            +  L EL L  N L   G++   L++L  L  + +  N + 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 9/117 (7%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS--GAFPSFIFNKSSLQ 98
           +Q  N    + L+L   ++   I +          +D   N++     FP        L+
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLL----RRLK 67

Query: 99  DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFN 154
            L ++ N +   I   +   LP L  + L+ N     G    L+    L  L +  N
Sbjct: 68  TLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 76  VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG 135
           VD  G  L    P  I       +L L+ N L       +   LP L  + L +N   G 
Sbjct: 13  VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 136 IPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRE-LSNLAE 193
            P+A    +++Q L L  N     I  ++   + +LK L L  N++   +      +L  
Sbjct: 70  EPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNS 127

Query: 194 LELMSLFDN 202
           L  ++L  N
Sbjct: 128 LTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 45  NLSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDL 102
            L  L  L L  N+L+  I    F   + ++ + L  N++     + +F     L+ L+L
Sbjct: 52  RLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNL 109

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQN 130
             N +S  +      +L  L  ++L+ N
Sbjct: 110 YDNQISC-VMPGSFEHLNSLTSLNLASN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 93  NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSA--LSKCTYLQILG 150
             +++++L L     +      + +    LE++SL       G+ S   L K   L+ L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV----GLISVSNLPKLPKLKKLE 77

Query: 151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ--GEIPRELSNLAELELMSLFDNEL 204
           LS N   G +      +  L  L L  N+L+    +   L  L  L+ + LF+ E+
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
           +  G I        +L+ L+L    L  S+ +   +   LK ++L  N++ G        
Sbjct: 36  SNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPK-LKKLELSENRIFGGLDMLAEK 93

Query: 94  KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
             +L  L+LS N L           L  L+ + L   
Sbjct: 94  LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 3/107 (2%)

Query: 43  LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102
           L  + +L+ L+L  N +   I +   +  TL+ + +  NQ++    S I    +L+ L +
Sbjct: 66  LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYM 122

Query: 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQIL 149
           S N ++     +  + L  LE + L+ N  +       +   Y   +
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 35/154 (22%)

Query: 39  IPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ 98
           + + L  L + + L LS N +   I S + + + L+ + L  N +     +      +L+
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KISSLSGMEN-LRILSLGRNLIK-KIENLDAVADTLE 96

Query: 99  DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFN---D 155
           +L +SYN ++     ++                      S + K   L++L +S N   +
Sbjct: 97  ELWISYNQIA-----SL----------------------SGIEKLVNLRVLYMSNNKITN 129

Query: 156 FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELS 189
           +      ++  + KL++L L  N L  +     +
Sbjct: 130 WGEI--DKLAALDKLEDLLLAGNPLYNDYKENNA 161

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 95  SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS--ALSKCTYLQILGLS 152
           S +++L L  +  +      +      LE++S        G+ S   L K   L+ L LS
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSIANLPKLNKLKKLELS 72

Query: 153 FNDFSGAIPKEIGNVTKLKELYLVRNRLQG-EIPRELSNLAELELMSLFDNEL 204
            N  SG +         L  L L  N+++       L  L  L+ + LF+ E+
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
           +  G +         L+ L+     L+ SI +   +   LK ++L  N++SG        
Sbjct: 29  SNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNK-LKKLELSDNRVSGGLEVLAEK 86

Query: 94  KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
             +L  L+LS N +           L  L+ + L   
Sbjct: 87  CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 46  LSSLQSLNLSFNRLSGSIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLS 103
           L+ L  L+LS N++  S+P   F   T L  + L  N+L  + P+ +F+K + L++L L 
Sbjct: 51  LTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALD 108

Query: 104 YNALSGEIPANICSNLPFLEYISLSQN 130
            N L   +P  I   L  L+ I L  N
Sbjct: 109 TNQLKS-VPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 8/131 (6%)

Query: 74  KYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133
             +      L+ + P+ I   SS   L+L  N L   +P  +   L  L  +SLSQN   
Sbjct: 10  TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ 65

Query: 134 GGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPRE-LSNL 191
                   K T L IL L  N    ++P  +   +T+LKEL L  N+L+  +P      L
Sbjct: 66  SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRL 123

Query: 192 AELELMSLFDN 202
             L+ + L  N
Sbjct: 124 TSLQKIWLHTN 134

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 40/201 (19%), Positives = 78/201 (38%), Gaps = 15/201 (7%)

Query: 16  VTCDVHSHRVTVFNVSGLNLTGT------IPSQLGNLSSLQSLNLSFNRLSGSIPSATFI 69
                 +   + F V  ++L+ +      +   L   S LQ+L+L   RLS  I +    
Sbjct: 81  FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140

Query: 70  THTLKYVDLRG-NQLSGAFPSFIFNK-SSLQDLDLSYNAL--SGEIPANICSNLPFLEYI 125
              L  ++L G +  S      + +  S L +L+LS+        +   +      +  +
Sbjct: 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200

Query: 126 SLS---QNMFHGGIPSALSKCTYLQILGLSFNDF-SGAIPKEIGNVTKLKELYLVR-NRL 180
           +LS   +N+    + + + +C  L  L LS +        +E   +  L+ L L R   +
Sbjct: 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260

Query: 181 QGEIPRELSNLAELELMSLFD 201
             E   EL  +  L+ + +F 
Sbjct: 261 IPETLLELGEIPTLKTLQVFG 281

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 22/168 (13%), Positives = 57/168 (33%), Gaps = 17/168 (10%)

Query: 46  LSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF--NKSSLQDLDLS 103
           L ++  LN    + + ++         LK +++    L  +    I   +  +L+ L L 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 104 Y--------NALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY---LQILGLS 152
                      ++   P       P L+++ +        +     +      L+ + +S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287

Query: 153 FNDFSG----AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELEL 196
               +      +   +  +  LK + +  N L  E+ +EL     +++
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKI 335

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 42  QLGNLSSLQSLNLSFNRLSGSIPSA---TFITHTLKYVDLRGNQLSG----AFPSFIFNK 94
                 +L+ L +        +      + I   L+ +D+    L+          +   
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306

Query: 95  SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM 131
             L+ +++ YN LS E+   +  +LP    I +S + 
Sbjct: 307 KHLKFINMKYNYLSDEMKKELQKSLPMK--IDVSDSQ 341

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 32/197 (16%), Positives = 61/197 (30%), Gaps = 19/197 (9%)

Query: 21  HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLN-LSFNRLSGSIPSATFITHTLKYVDLR 79
           +   +    V    +   +       ++L+     S N   G       +    K   L 
Sbjct: 218 NCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276

Query: 80  GNQLS-GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPS 138
            + +     P      + ++ LDL Y  L  E    +    P LE +     +   G+  
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV 336

Query: 139 ALSKCTYLQILGLSFNDFSGAIPKEIGNVT------------KLKELYLVRNRLQGE--- 183
               C  L+ L +        +  E G V+            +L+ + +  + +  E   
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396

Query: 184 -IPRELSNLAELELMSL 199
            I   L NL +  L+ L
Sbjct: 397 SIGTYLKNLCDFRLVLL 413

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 24/138 (17%)

Query: 43  LGNLSSLQSLNLS-FNRLSGSIPSATFITH------TLKYVDLRGNQLS--GAFP---SF 90
             N   L+ +NL+    +   +P+             +K   + G + +   AF      
Sbjct: 32  QNNDPDLEEVNLNNIMNIP--VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML 89

Query: 91  IFNKSSLQDLDLSYNALSGEIPANICSNLPF---LEYISLSQNMFHGG------IPSALS 141
             N + L+ L++  N +SG     +   L     L  + +       G      I + L 
Sbjct: 90  KVNNT-LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE 148

Query: 142 KCTYLQILGLSFNDFSGA 159
           K T L   G  F      
Sbjct: 149 KNTTLLKFGYHFTQQGPR 166

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 29/194 (14%), Positives = 69/194 (35%), Gaps = 15/194 (7%)

Query: 21  HSHRVTVFNVSGLNLTGTIPSQLG-NLSSLQSLNLSFNRL--SGSIPSATFITHTLKYVD 77
               +    +  + +T      +  +  + + L LS      +  + +       LK +D
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162

Query: 78  LRGNQLSG----AFPSFIFNKSSLQDLDLS--YNALSGEIPANICSNLPFLEYISLSQNM 131
           LR + +          F    +SL  L++S   + +S      + +  P L+ + L++ +
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222

Query: 132 FHGGIPSALSKCTYLQILGLSF------NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIP 185
               + + L +   L+ LG          D    +   +    +L+ L    + +   +P
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282

Query: 186 RELSNLAELELMSL 199
              S  + L  ++L
Sbjct: 283 AVYSVCSRLTTLNL 296

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 33/198 (16%), Positives = 68/198 (34%), Gaps = 19/198 (9%)

Query: 24  RVTVFNVSGLNLTG----TIPSQLGNLSSLQSLNLSFNRLS-GSIPSATFITHTLKYVDL 78
               FN+      G     I +   + + L+ + L    ++   +          K + L
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 79  RG-NQLSGAFPSFIFNK-SSLQDLDLSYN---ALSGEIPANICSNLPFLEYISLSQNMFH 133
                 S    + I     +L++LDL  +    +SG   ++       L  +++S     
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197

Query: 134 ---GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYL------VRNRLQGEI 184
                +   +++C  L+ L L+       +   +    +L+EL        VR  +   +
Sbjct: 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257

Query: 185 PRELSNLAELELMSLFDN 202
              LS   EL  +S F +
Sbjct: 258 SVALSGCKELRCLSGFWD 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.83
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.81
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.63
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.26
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.24
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.84
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.72
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.57
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.41
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.92
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.3
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.23
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.99
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.14
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.51
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	81.52

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.2e-29  Score=188.67  Aligned_cols=201  Identities=36%  Similarity=0.589  Sum_probs=168.1

Q ss_pred             CCCCCCCCCCc--cceeeecCCC--ceEEEEEecCCcccc--cCCCCCCCCCCCcEEEeec-CcceeecCccccCCCCcc
Q 037027            2 KNWNTSSPVCN--WTGVTCDVHS--HRVTVFNVSGLNLTG--TIPSQLGNLSSLQSLNLSF-NRLSGSIPSATFITHTLK   74 (205)
Q Consensus         2 ~~~~~~~~~c~--~~~~~~~~~~--~~l~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~   74 (205)
                      ..|..+.++|.  |.|+.|....  .+++.|+++++.+.+  .+|..|+++++|+.|++++ +.+....+..+..+++|+
T Consensus        25 ~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~  104 (313)
T 1ogq_A           25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH  104 (313)
T ss_dssp             TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCS
T ss_pred             cCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCC
Confidence            36988889999  9999997654  689999999999988  7899999999999999995 888877888899999999


Q ss_pred             EEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCC-cceEEEeec
Q 037027           75 YVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT-YLQILGLSF  153 (205)
Q Consensus        75 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~l~l~~  153 (205)
                      +|++.+|.+....|..+..+++|++|++++|.+.+.++..+ ..+++|++|++++|.+++..|..+..++ +|+.|++++
T Consensus       105 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~  183 (313)
T 1ogq_A          105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred             EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence            99999999887788888889999999999998876666655 7788899999999988877787888877 888888888


Q ss_pred             ceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       154 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      |.+.+..|..+..++ |++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            888777777776665 78888888877766777777777777777777754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=6.7e-26  Score=166.42  Aligned_cols=181  Identities=22%  Similarity=0.234  Sum_probs=153.0

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      +.++.|+++++.+....+..|+++++|+.|++++|.+....+..|..+++|++|++.+|.+....+..+..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            35788899998888666677889999999999999888666666788999999999999988666667778899999999


Q ss_pred             ccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccc
Q 037027          103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG  182 (205)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~  182 (205)
                      ++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       117 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          117 DRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            999987 5665555788999999999999986655668889999999999999887766778888999999999999987


Q ss_pred             cCchhccCCCCCcEEeccCCcC
Q 037027          183 EIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       183 ~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      ..+..+..+++|+.|++++|++
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          196 VPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCHHHhccccCCCEEEecCCCe
Confidence            6667788999999999999986

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=9.3e-25  Score=161.47  Aligned_cols=182  Identities=22%  Similarity=0.232  Sum_probs=108.0

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcc-cccCCCccccCCCCccEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ-LSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L  100 (205)
                      .++++.|+++++.+....+..|+.+++|+.|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            3467777777777776566667777777777777777765556666677777777777775 554445556666666666


Q ss_pred             EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027          101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL  180 (205)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l  180 (205)
                      ++++|.+. .+....+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       111 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            66666665 33333335555666666666655544344455555566666665555544444444555555555555555


Q ss_pred             cccCchhccCCCCCcEEeccCCcC
Q 037027          181 QGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       181 ~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      ++..+..+..+++|+.|++++|.+
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cccCHhHccCcccccEeeCCCCcC
Confidence            544445555555555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=6.3e-25  Score=162.40  Aligned_cols=184  Identities=24%  Similarity=0.229  Sum_probs=165.6

Q ss_pred             CCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCc-ceeecCccccCCCCccEEEecCcccccCCCccccCCCCcc
Q 037027           20 VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNR-LSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ   98 (205)
Q Consensus        20 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   98 (205)
                      ...++++.|+++++.+.+..+..|+++++|+.|++++|. +....+..+..+++|++|++.+|.+....+..+..+++|+
T Consensus        53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  132 (285)
T 1ozn_A           53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ  132 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence            355789999999999988788899999999999999997 7766678899999999999999999877788888899999


Q ss_pred             EEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecc
Q 037027           99 DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN  178 (205)
Q Consensus        99 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  178 (205)
                      +|++++|.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus       133 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          133 YLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence            9999999997 666655588999999999999998766667899999999999999998888889999999999999999


Q ss_pred             cccccCchhccCCCCCcEEeccCCcC
Q 037027          179 RLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       179 ~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      .+++..+..+..+++|+.|++++|++
T Consensus       212 ~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          212 NLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cCCcCCHHHcccCcccCEEeccCCCc
Confidence            99977778899999999999999986

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.9e-25  Score=168.27  Aligned_cols=193  Identities=21%  Similarity=0.257  Sum_probs=125.3

Q ss_pred             CCCCCCCccceeeec--------CCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEE
Q 037027            5 NTSSPVCNWTGVTCD--------VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYV   76 (205)
Q Consensus         5 ~~~~~~c~~~~~~~~--------~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   76 (205)
                      ......|.|.|..|.        ....+++.|+++++.+. .+|..+.++++|+.|++++|.+. .++..+..+++|++|
T Consensus        55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L  132 (328)
T 4fcg_A           55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL  132 (328)
T ss_dssp             TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEE
T ss_pred             cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEE
Confidence            457788999998883        23457888888888887 66766777888888888888887 667777788888888


Q ss_pred             EecCcccccCCCccccCCCCccEEEcccccCCcccCccc--------ccCCCCcceeeecccccccCCCCCcCCCCcceE
Q 037027           77 DLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANI--------CSNLPFLEYISLSQNMFHGGIPSALSKCTYLQI  148 (205)
Q Consensus        77 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  148 (205)
                      ++++|.+. ..|..+..+++|++|++++|...+.++..+        +..+++|+.|++++|.++ .+|..+..+++|+.
T Consensus       133 ~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~  210 (328)
T 4fcg_A          133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS  210 (328)
T ss_dssp             EEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred             ECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence            88888877 667777777777777777765554555433        123556666666666655 44555555556666


Q ss_pred             EEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027          149 LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       149 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      |++++|.+.+ .+..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus       211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred             EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence            6666655542 3334445555555555555544444444555555555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=3.3e-26  Score=186.23  Aligned_cols=197  Identities=25%  Similarity=0.433  Sum_probs=135.9

Q ss_pred             CCCCCCCCCcc---ceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcc--------------------
Q 037027            3 NWNTSSPVCNW---TGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRL--------------------   59 (205)
Q Consensus         3 ~~~~~~~~c~~---~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------   59 (205)
                      +|..+.++|.|   .|+.|... .+|+.|+++++++.+.+|+.++++++|+.|++++|.+                    
T Consensus        59 ~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~  137 (636)
T 4eco_A           59 NWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ  137 (636)
T ss_dssp             CCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH
T ss_pred             CCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH
Confidence            69999999999   99999766 4899999999999999999999999999999988743                    


Q ss_pred             ----------------------------------------------------------eeecCccccCCCCccEEEecCc
Q 037027           60 ----------------------------------------------------------SGSIPSATFITHTLKYVDLRGN   81 (205)
Q Consensus        60 ----------------------------------------------------------~~~~~~~~~~l~~L~~L~l~~~   81 (205)
                                                                                .. +|..+..+++|++|++++|
T Consensus       138 ~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n  216 (636)
T 4eco_A          138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS  216 (636)
T ss_dssp             HHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC
T ss_pred             HHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCC
Confidence                                                                      22 5566777888888888888


Q ss_pred             ccccC-----------------CCcccc--CCCCccEEEcccccCCcccCcccccCCCCcceeeecccc-ccc-CCCC--
Q 037027           82 QLSGA-----------------FPSFIF--NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM-FHG-GIPS--  138 (205)
Q Consensus        82 ~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~--  138 (205)
                      .++..                 .|..+.  .+.+|++|++++|.+.+.++..+ ..+++|++|++++|. +++ .+|.  
T Consensus       217 ~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~  295 (636)
T 4eco_A          217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDW  295 (636)
T ss_dssp             CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred             ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHH
Confidence            87753                 777777  78888888888887766666554 566677777777665 543 2333  


Q ss_pred             -----------------------------CcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhcc
Q 037027          139 -----------------------------ALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELS  189 (205)
Q Consensus       139 -----------------------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~  189 (205)
                                                   .+..+++|+.|++++|.+.+.+| .+..+++|++|++++|.++ .+|..+.
T Consensus       296 ~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~  373 (636)
T 4eco_A          296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFC  373 (636)
T ss_dssp             HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSE
T ss_pred             HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhh
Confidence                                         34444445555555554443444 4444455555555555554 4444455


Q ss_pred             CCCC-CcEEeccCCcC
Q 037027          190 NLAE-LELMSLFDNEL  204 (205)
Q Consensus       190 ~~~~-L~~l~l~~n~l  204 (205)
                      .+++ |++|++++|.+
T Consensus       374 ~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          374 GFTEQVENLSFAHNKL  389 (636)
T ss_dssp             EECTTCCEEECCSSCC
T ss_pred             hhcccCcEEEccCCcC
Confidence            5555 55555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=1.1e-24  Score=158.25  Aligned_cols=189  Identities=23%  Similarity=0.309  Sum_probs=160.2

Q ss_pred             CCccceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCc
Q 037027           10 VCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPS   89 (205)
Q Consensus        10 ~c~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~   89 (205)
                      ++.|.|..|..   ..+.++++++.+. .+|..+.  +.++.|++++|.+....+..+..+++|++|++++|.+....+.
T Consensus         4 Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   77 (251)
T 3m19_A            4 CETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG   77 (251)
T ss_dssp             CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh
Confidence            55677777742   3446788888877 5565553  5899999999999877777899999999999999999877777


Q ss_pred             cccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCC
Q 037027           90 FIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTK  169 (205)
Q Consensus        90 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  169 (205)
                      .+..+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++
T Consensus        78 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           78 VFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             HhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            7888999999999999998 666666688999999999999998666667888999999999999998776767888999


Q ss_pred             ceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          170 LKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       170 L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      |++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            999999999999777788999999999999999874

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=1.3e-24  Score=180.32  Aligned_cols=198  Identities=30%  Similarity=0.475  Sum_probs=151.6

Q ss_pred             CCCCCCCCCCccceeeecCCCceEEEEEecCCccccc---C-----------------------CCCCCCCCCCcEEEee
Q 037027            2 KNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGT---I-----------------------PSQLGNLSSLQSLNLS   55 (205)
Q Consensus         2 ~~~~~~~~~c~~~~~~~~~~~~~l~~l~l~~~~~~~~---~-----------------------~~~~~~~~~L~~L~l~   55 (205)
                      ..|..+.++|.|.|+.|.  ..+|+.++++++.+.+.   +                       |+.|+++++|+.|+++
T Consensus        31 ~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls  108 (768)
T 3rgz_A           31 PDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLS  108 (768)
T ss_dssp             TTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECC
T ss_pred             cCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECC
Confidence            359988999999999998  45899999999877654   2                       2567788888899998


Q ss_pred             cCcceeecCc--cccCCCCccEEEecCcccccCCCccc-cCCCCccEEEcccccCCcccCccc--ccCCCCcceeeeccc
Q 037027           56 FNRLSGSIPS--ATFITHTLKYVDLRGNQLSGAFPSFI-FNKSSLQDLDLSYNALSGEIPANI--CSNLPFLEYISLSQN  130 (205)
Q Consensus        56 ~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~l~l~~~  130 (205)
                      +|.+.+..+.  .+..+++|++|++++|.+....+..+ ..+++|++|++++|.+.+..+...  +..+++|+.+++++|
T Consensus       109 ~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             SSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             CCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence            8888766666  78888889999998888876555554 677888888888888864433331  366777888888888


Q ss_pred             ccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          131 MFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       131 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      .+.+..+  +..+++|++|++++|.+.+..|. +..+++|++|++++|.+++.++..+..+++|++|++++|.+
T Consensus       189 ~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  259 (768)
T 3rgz_A          189 KISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF  259 (768)
T ss_dssp             EEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC
T ss_pred             cccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcc
Confidence            7764333  36677888888888877765555 77788888888888888777777888888888888887765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=6.1e-25  Score=164.56  Aligned_cols=182  Identities=27%  Similarity=0.428  Sum_probs=129.6

Q ss_pred             CCceEEEEEecC-CcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccE
Q 037027           21 HSHRVTVFNVSG-LNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQD   99 (205)
Q Consensus        21 ~~~~l~~l~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~   99 (205)
                      ..++++.|++++ +.+.+..|..|+++++|+.|++++|.+....+..+..+++|++|++++|.+....|..+..+++|++
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            456788899985 7888788888888999999999998888777888888888999999888888777788888888888


Q ss_pred             EEcccccCCcccCcccccCCC-CcceeeecccccccCCCCCc-----------------------CCCCcceEEEeecce
Q 037027          100 LDLSYNALSGEIPANICSNLP-FLEYISLSQNMFHGGIPSAL-----------------------SKCTYLQILGLSFND  155 (205)
Q Consensus       100 L~l~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~-----------------------~~~~~L~~l~l~~~~  155 (205)
                      |++++|.+.+.++..+ ..++ .|+.+++++|.+++..|..+                       ..+++|+.|++++|.
T Consensus       154 L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             EECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence            8888888865666555 4444 66777777666654444444                       444445555555554


Q ss_pred             eecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          156 FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       156 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +.+..+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++
T Consensus       233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            4433222 44556666666666666666677777777777777777765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=4.6e-24  Score=159.26  Aligned_cols=197  Identities=23%  Similarity=0.284  Sum_probs=115.4

Q ss_pred             CCCCCccceeeecC---------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee--cCccccCCCCccE
Q 037027            7 SSPVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS--IPSATFITHTLKY   75 (205)
Q Consensus         7 ~~~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~   75 (205)
                      ....|.|.++.|..         ..++++.|+++++.+....+..|+++++|+.|++++|.+...  .+..+..+++|++
T Consensus         3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~   82 (306)
T 2z66_A            3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY   82 (306)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred             CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence            34567888888843         235799999999998855555678999999999999887632  1334445555666


Q ss_pred             EEecCcccccCCCccccCCCCccEEEcccccCCc------------------------ccCcccccCCCCcceeeecccc
Q 037027           76 VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSG------------------------EIPANICSNLPFLEYISLSQNM  131 (205)
Q Consensus        76 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------------------~~~~~~~~~~~~L~~l~l~~~~  131 (205)
                      |++++|.+. ..+..+..+++|++|++++|.+.+                        ......+..+++|+.|++++|.
T Consensus        83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            666655554 233334444455555555444431                        2222222444555555555555


Q ss_pred             ccc-CCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          132 FHG-GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       132 ~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +.+ ..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            543 2444555555555555555555544455555556666666666665544444555566666666666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=2.5e-24  Score=178.57  Aligned_cols=183  Identities=37%  Similarity=0.531  Sum_probs=142.8

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      .++++.|++++|.+.+..|..++++++|+.|++++|.+.+..+..+..+++|++|++.+|.+....|..+..+++|+.|+
T Consensus       465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            44667777777777766777777777777777777777766777777777777778777777767777777778888888


Q ss_pred             cccccCCcccCcccc-----------------------------------------------------------------
Q 037027          102 LSYNALSGEIPANIC-----------------------------------------------------------------  116 (205)
Q Consensus       102 l~~~~~~~~~~~~~~-----------------------------------------------------------------  116 (205)
                      +++|.+.+.++..++                                                                 
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~  624 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT  624 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred             CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence            887776655443321                                                                 


Q ss_pred             ----cCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCC
Q 037027          117 ----SNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLA  192 (205)
Q Consensus       117 ----~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~  192 (205)
                          ..++.++.+++++|.+++.+|..+..++.|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++
T Consensus       625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~  704 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT  704 (768)
T ss_dssp             CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred             chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence                2245677888888888888888888888889999999988888888888888999999999998888888888999


Q ss_pred             CCcEEeccCCcC
Q 037027          193 ELELMSLFDNEL  204 (205)
Q Consensus       193 ~L~~l~l~~n~l  204 (205)
                      .|++|++++|++
T Consensus       705 ~L~~L~ls~N~l  716 (768)
T 3rgz_A          705 MLTEIDLSNNNL  716 (768)
T ss_dssp             CCSEEECCSSEE
T ss_pred             CCCEEECcCCcc
Confidence            999999998876

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=3.7e-24  Score=162.80  Aligned_cols=200  Identities=22%  Similarity=0.230  Sum_probs=165.7

Q ss_pred             CCCCCCCCccceeeecC-----------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCC
Q 037027            4 WNTSSPVCNWTGVTCDV-----------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT   72 (205)
Q Consensus         4 ~~~~~~~c~~~~~~~~~-----------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   72 (205)
                      |......|.|.+. |+.           ..++++.|+++++.+....+..|+++++|+.|++++|.+....+..+..+++
T Consensus        23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (353)
T 2z80_A           23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS  101 (353)
T ss_dssp             ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence            5667778888765 532           2347999999999998777778999999999999999999777788999999


Q ss_pred             ccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCc-ccccCCCCcceeeecccc-cccCCCCCcCCCCcceEEE
Q 037027           73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPA-NICSNLPFLEYISLSQNM-FHGGIPSALSKCTYLQILG  150 (205)
Q Consensus        73 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~  150 (205)
                      |++|++++|.++...+..+..+++|++|++++|.+. .++. ..+..+++|+.+++++|. +....+..+..+++|+.|+
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  180 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE  180 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence            999999999998554555888999999999999997 6665 455889999999999994 6655667889999999999


Q ss_pred             eecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       151 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      +++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.++
T Consensus       181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred             CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence            9999998888889999999999999999987444445567899999999999764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=4.1e-24  Score=161.01  Aligned_cols=179  Identities=20%  Similarity=0.295  Sum_probs=132.1

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccC-------
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN-------   93 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-------   93 (205)
                      ..++++.|++++|.+. .+|..++++++|+.|++++|.+. .++..+..+++|++|++.+|......|..+..       
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            3457888888888877 67777888888888888888887 56777778888888888887666566655443       


Q ss_pred             --CCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCce
Q 037027           94 --KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLK  171 (205)
Q Consensus        94 --l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~  171 (205)
                        +++|++|++++|.+. .++..+ ..+++|+.|++++|.+++ ++..+..+++|+.|++++|.+.+..|..+..+++|+
T Consensus       180 ~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             EESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             ccCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence              777788888877776 666554 667777777777777763 455667777777777777777666777777777777


Q ss_pred             EEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          172 ELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       172 ~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +|++++|.+.+.+|..+..+++|+.|++++|++
T Consensus       257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred             EEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence            777777777667777777777777777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=2.1e-23  Score=150.52  Aligned_cols=199  Identities=15%  Similarity=0.196  Sum_probs=162.4

Q ss_pred             CCCCCCCCCcc-ce--eeecC------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCc-ceeecCccccCCCC
Q 037027            3 NWNTSSPVCNW-TG--VTCDV------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNR-LSGSIPSATFITHT   72 (205)
Q Consensus         3 ~~~~~~~~c~~-~~--~~~~~------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~   72 (205)
                      .|+.....|.. ..  +.|..      ..++++.|+++++.+....+..|+++++|+.|++++|+ +....+.+|..+++
T Consensus         2 ~~cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~   81 (239)
T 2xwt_C            2 GCSSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK   81 (239)
T ss_dssp             -CCSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTT
T ss_pred             CCCCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcC
Confidence            34555555644 33  33632      34579999999999987777789999999999999997 88667778999999


Q ss_pred             ccEEEecC-cccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcc---eeeeccc-ccccCCCCCcCCCCcce
Q 037027           73 LKYVDLRG-NQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE---YISLSQN-MFHGGIPSALSKCTYLQ  147 (205)
Q Consensus        73 L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~L~  147 (205)
                      |++|++.+ +.++...+..+..+++|++|++++|.+. .++.  +..++.|+   .+++++| .++...+..+..+++|+
T Consensus        82 L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~  158 (239)
T 2xwt_C           82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET  158 (239)
T ss_dssp             CCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred             CcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence            99999998 8888666678888999999999999997 5665  46778887   9999999 88866667789999999


Q ss_pred             -EEEeecceeecccCccccccCCceEEEeeccc-ccccCchhccCC-CCCcEEeccCCcCC
Q 037027          148 -ILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR-LQGEIPRELSNL-AELELMSLFDNELQ  205 (205)
Q Consensus       148 -~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~l~~~-~~L~~l~l~~n~l~  205 (205)
                       .+++++|.+....+..+.. ++|+++++++|+ +++..+..|..+ ++|+.|++++|+++
T Consensus       159 ~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          159 LTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             EEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             eEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence             9999999988444444444 899999999995 987777889999 99999999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=1.7e-24  Score=180.28  Aligned_cols=197  Identities=21%  Similarity=0.366  Sum_probs=139.8

Q ss_pred             CCCCCC-----CC--Ccc------------ceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEe-ecCcceee
Q 037027            3 NWNTSS-----PV--CNW------------TGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNL-SFNRLSGS   62 (205)
Q Consensus         3 ~~~~~~-----~~--c~~------------~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~   62 (205)
                      .|+.+.     ++  |.|            .|+.|... .+|+.|+|+++++.+.+|+.++++++|+.|++ ++|.+...
T Consensus       285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~  363 (876)
T 4ecn_A          285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG  363 (876)
T ss_dssp             GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHT
T ss_pred             CCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCchHHhccccceEeeeccccccccc
Confidence            476654     45  999            99999874 48999999999999999999999999999999 66532111


Q ss_pred             ----------------------------------------------------------------------------cCcc
Q 037027           63 ----------------------------------------------------------------------------IPSA   66 (205)
Q Consensus        63 ----------------------------------------------------------------------------~~~~   66 (205)
                                                                                                  +|..
T Consensus       364 ~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~  443 (876)
T 4ecn_A          364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA  443 (876)
T ss_dssp             TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG
T ss_pred             ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHH
Confidence                                                                                        5566


Q ss_pred             ccCCCCccEEEecCccccc-----------------CCCcccc--CCCCccEEEcccccCCcccCcccccCCCCcceeee
Q 037027           67 TFITHTLKYVDLRGNQLSG-----------------AFPSFIF--NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISL  127 (205)
Q Consensus        67 ~~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l  127 (205)
                      +..+++|++|++++|.++.                 ..|..+.  .+++|++|++++|.+.+.++..+ ..+++|+.|++
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~L  522 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNI  522 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEEC
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEEC
Confidence            7788889999999998885                 2677766  88889999998888776777555 67777888888


Q ss_pred             cccc-ccc-CCCCCcC-------CCCcceEEEeecceeecccCc--cccccCCceEEEeecccccccCchhccCCCCCcE
Q 037027          128 SQNM-FHG-GIPSALS-------KCTYLQILGLSFNDFSGAIPK--EIGNVTKLKELYLVRNRLQGEIPRELSNLAELEL  196 (205)
Q Consensus       128 ~~~~-~~~-~~~~~~~-------~~~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~  196 (205)
                      ++|. +++ .+|..+.       .+++|+.|++++|.+. .+|.  .+..+++|++|++++|.++ .+| .+..+++|+.
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~  599 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTD  599 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceE
Confidence            7776 554 3343222       3336666666666665 4555  5556666666666666665 444 5555666666


Q ss_pred             EeccCCcC
Q 037027          197 MSLFDNEL  204 (205)
Q Consensus       197 l~l~~n~l  204 (205)
                      |++++|.+
T Consensus       600 L~Ls~N~l  607 (876)
T 4ecn_A          600 LKLDYNQI  607 (876)
T ss_dssp             EECCSSCC
T ss_pred             EECcCCcc
Confidence            66666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=6.8e-23  Score=150.56  Aligned_cols=180  Identities=24%  Similarity=0.310  Sum_probs=156.3

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      ..++++.+++.++.+..  .+.++.+++|+.|++++|.+.+  ...+..+++|++|++.+|.++...+..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            44578899999998763  3347889999999999999884  3478899999999999999987667778889999999


Q ss_pred             EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027          101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL  180 (205)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l  180 (205)
                      ++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       115 ~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          115 VLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            99999998 56666558899999999999999876667788999999999999999877777788899999999999999


Q ss_pred             cccCchhccCCCCCcEEeccCCcCC
Q 037027          181 QGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       181 ~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      ++..+..+..+++|+.|++++|++.
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCHHHHhCCcCCCEEEccCCCcc
Confidence            9877888999999999999999863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=2.4e-23  Score=160.28  Aligned_cols=181  Identities=23%  Similarity=0.193  Sum_probs=119.5

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      ++++.++++++.+....+..|+.+++|+.|++.+|.+....+..+..+++|++|++.+|.+....+..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            45677777777766444444566777777777777777555566777777777777777776555666667777777777


Q ss_pred             ccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeeccc----------------------
Q 037027          103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI----------------------  160 (205)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~----------------------  160 (205)
                      ++|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..                      
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~  203 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  203 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence            777776 566555566777777777777776555556666677777777666553211                      


Q ss_pred             -------------------------------------CccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027          161 -------------------------------------PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       161 -------------------------------------~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                                                           ...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus       204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (390)
T 3o6n_A          204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR  283 (390)
T ss_dssp             CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC
T ss_pred             CCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc
Confidence                                                 1123445666677777776665566667777777777777766


Q ss_pred             C
Q 037027          204 L  204 (205)
Q Consensus       204 l  204 (205)
                      +
T Consensus       284 l  284 (390)
T 3o6n_A          284 L  284 (390)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=6.8e-23  Score=151.84  Aligned_cols=178  Identities=24%  Similarity=0.242  Sum_probs=152.8

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      .++++.|+++++.+.+..+..|+++++|+.|++++|.+......  ..+++|++|++++|.+. .++..+..+++|++|+
T Consensus        30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            35788999999999877788899999999999999998854332  68889999999999988 6677778899999999


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +++|.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++
T Consensus       107 l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          107 VSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            9999998 666655688999999999999998766677888999999999999998666667778999999999999999


Q ss_pred             ccCchhccCCCCCcEEeccCCcC
Q 037027          182 GEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       182 ~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                       .+|..+...++|+.+++++|++
T Consensus       186 -~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          186 -TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCB
T ss_pred             -ccChhhcccccCCeEEeCCCCc
Confidence             6777888888999999999986

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=5.2e-23  Score=151.41  Aligned_cols=183  Identities=22%  Similarity=0.173  Sum_probs=144.3

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      .+.++.|+++++.+....+..|+++++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            34688999999988877777888899999999999988876777888899999999999988866667788888999999


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccccC-CCCCcCCCCcceEEEeecceeecccCcccc---------------
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGG-IPSALSKCTYLQILGLSFNDFSGAIPKEIG---------------  165 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~---------------  165 (205)
                      +.+|.+. .+....+..+++|++|++++|.++.. .|..+..+++|+.|++++|.+.+..+..+.               
T Consensus       107 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             CTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             CCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence            9988887 45543347788889999988888753 477788888888888888876543332221               


Q ss_pred             ------------ccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          166 ------------NVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       166 ------------~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                                  ...+|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus       186 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence                        2236888888888888666677788999999999999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=1.8e-23  Score=156.00  Aligned_cols=182  Identities=22%  Similarity=0.292  Sum_probs=152.1

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecC-ccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP-SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      .++++.|+++++.+. ..+..+..+++|+.|++++|.+....+ ..+..+++|++|++.+|.+....+..+..+++|++|
T Consensus        77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence            456777777777665 345557778888888888888875444 567888999999999998887777778889999999


Q ss_pred             EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027          101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL  180 (205)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l  180 (205)
                      ++++|.+.+......+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            99999987423333447889999999999999877788899999999999999999877777788899999999999999


Q ss_pred             cccCchhccCCC-CCcEEeccCCcC
Q 037027          181 QGEIPRELSNLA-ELELMSLFDNEL  204 (205)
Q Consensus       181 ~~~~~~~l~~~~-~L~~l~l~~n~l  204 (205)
                      ++..+..+..++ +|+.|++++|++
T Consensus       236 ~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          236 MTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             cccCHHHHHhhhccCCEEEccCCCe
Confidence            988888999885 899999999986

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=7e-23  Score=160.58  Aligned_cols=179  Identities=22%  Similarity=0.208  Sum_probs=117.3

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      ++++.|+++++.+.+..+..|+++++|+.|++++|.+....+..|..+++|++|++.+|.++...+..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57889999999998888888999999999999999998777788888999999999998888666666777888888888


Q ss_pred             ccccCCcccCcccc-------------------------cCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceee
Q 037027          103 SYNALSGEIPANIC-------------------------SNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS  157 (205)
Q Consensus       103 ~~~~~~~~~~~~~~-------------------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  157 (205)
                      ++|.+. .++...+                         ..+++|+.|++++|.+++.  +.+..+++|+.|++++|.+.
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCS
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCc
Confidence            888775 4433222                         3344444444444444321  12344445555555555554


Q ss_pred             cccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       158 ~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+
T Consensus       232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence            44444455555555555555555544444455555555555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=6e-23  Score=160.44  Aligned_cols=179  Identities=23%  Similarity=0.269  Sum_probs=106.5

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      ++++.|+++++.+....+..|+++++|+.|++++|.+....+..|..+++|++|++.+|.++...+..+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            46788888888888777788888888888888888888666677888888888888888877555556667777777777


Q ss_pred             ccccCCcccCccc-------------------------ccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceee
Q 037027          103 SYNALSGEIPANI-------------------------CSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS  157 (205)
Q Consensus       103 ~~~~~~~~~~~~~-------------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  157 (205)
                      ++|.+. .++...                         +..+++|+.|++++|.++. +| .+..+++|+.|++++|.+.
T Consensus       144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCC
T ss_pred             CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccC
Confidence            777665 333322                         2333444444444444331 11 2333444444444444444


Q ss_pred             cccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       158 ~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+
T Consensus       221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            34344444444444444444444443344444444444444444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.7e-22  Score=148.26  Aligned_cols=193  Identities=25%  Similarity=0.346  Sum_probs=167.2

Q ss_pred             CCCCccceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCC
Q 037027            8 SPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAF   87 (205)
Q Consensus         8 ~~~c~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~   87 (205)
                      ...|.|.+..|.+.. ..+.++++++.++ .+|..+.  ++++.|++++|.+....+..+..+++|++|++.+|.++...
T Consensus         2 ~~~C~~~~~~C~c~~-~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCNN-NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEET-TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeCC-CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            468999999997754 4667899999887 4665543  67999999999998766678999999999999999998666


Q ss_pred             CccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCcccccc
Q 037027           88 PSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNV  167 (205)
Q Consensus        88 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  167 (205)
                      +..+..+++|++|++++|.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  156 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL  156 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             hhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence            666788999999999999998 6776666889999999999999987777788999999999999999987766778889


Q ss_pred             CCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          168 TKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       168 ~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      ++|++|++++|.+++..+..|..+++|++|++++|+++
T Consensus       157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence            99999999999999777778999999999999999874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=1e-22  Score=159.68  Aligned_cols=174  Identities=20%  Similarity=0.213  Sum_probs=131.2

Q ss_pred             EEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccc
Q 037027           26 TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN  105 (205)
Q Consensus        26 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  105 (205)
                      ..++.++..+. .+|..+.  ++++.|++++|.+....+..|..+++|++|++++|.+....+..+..+.+|++|++++|
T Consensus        57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            34666666665 4565443  68999999999999888889999999999999999998777788999999999999999


Q ss_pred             cCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeec-------------------------ceeeccc
Q 037027          106 ALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF-------------------------NDFSGAI  160 (205)
Q Consensus       106 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~-------------------------~~~~~~~  160 (205)
                      .+. .++...+..+++|+.|++++|.+....+..+..+++|+.|++++                         |.+.+. 
T Consensus       134 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          134 WLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-  211 (452)
T ss_dssp             CCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred             cCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence            998 67766668899999999999988755444555555555555555                         433321 


Q ss_pred             CccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       161 ~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      + .+..+++|++|++++|.+++..+..|..+++|+.|++++|.++
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  255 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS  255 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred             c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence            1 2444556666666667666666677777777777777777653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=1.9e-22  Score=157.59  Aligned_cols=181  Identities=24%  Similarity=0.221  Sum_probs=133.4

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCccccc---------------
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG---------------   85 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------   85 (205)
                      ..++++.|++++|.+....+..|.++++|+.|++++|.+....+..|..+++|++|++.+|.+..               
T Consensus        86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence            33455556666655554444555555555555555555553333344555555555555554432               


Q ss_pred             ----------CCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecce
Q 037027           86 ----------AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFND  155 (205)
Q Consensus        86 ----------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  155 (205)
                                ..+..+..+.+|++|++++|.+. .++.  +..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus       166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence                      22234556778888888888886 5553  3678899999999999998778899999999999999999


Q ss_pred             eecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          156 FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       156 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus       243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            9888888899999999999999999977788899999999999999986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=8.2e-23  Score=165.26  Aligned_cols=180  Identities=23%  Similarity=0.192  Sum_probs=108.6

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS  103 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  103 (205)
                      +++.++++++.+....+..|+.+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            45566666666654444445556666666666666665555566666666666666666665555555566666666666


Q ss_pred             cccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeeccc-----------------------
Q 037027          104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI-----------------------  160 (205)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-----------------------  160 (205)
                      +|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..                       
T Consensus       132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~  210 (597)
T 3oja_B          132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP  210 (597)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred             CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence            66665 455544455666666666666665555555566666666666655443211                       


Q ss_pred             ------------------------------------CccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          161 ------------------------------------PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       161 ------------------------------------~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                                                          +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus       211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             chhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence                                                12344556677777777777666666677777777777776655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=1.8e-22  Score=159.12  Aligned_cols=181  Identities=17%  Similarity=0.157  Sum_probs=155.4

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      .++++.|+++++.+.+..+..|+++++|+.|++++|.+....+.+|..+++|++|++.+|.+....+..+..+++|++|+
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            45789999999999988888999999999999999999988888999999999999999999866566678899999999


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +++|.+. .+....+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       111 Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          111 ISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             CTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            9999997 444444588999999999999998777788899999999999999887666667788899999999999888


Q ss_pred             ccCchhccCCCCCcEEeccCCc
Q 037027          182 GEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       182 ~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                      +..+..+..+++|+.|++++|+
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCT
T ss_pred             EeChhhcccCcccceeeCCCCc
Confidence            7767778888888877777764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=1.7e-22  Score=161.81  Aligned_cols=182  Identities=19%  Similarity=0.115  Sum_probs=149.4

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      ++++.|+++++.+.+..|..|+++++|+.|++++|.+....+.+|..+++|++|++++|.+....+..+..+.+|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            47999999999998888888999999999999999999777788999999999999999998666666889999999999


Q ss_pred             ccccCCcccCcccccCCCCcceeeeccccc-ccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          103 SYNALSGEIPANICSNLPFLEYISLSQNMF-HGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      ++|.+.+......+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+.+..+..+..+++|+++++..|.+.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            999987321223347889999999999984 4333467899999999999999998878888888888888888888776


Q ss_pred             ccCchhccCCCCCcEEeccCCcC
Q 037027          182 GEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       182 ~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      ......+..+++|++|++++|.+
T Consensus       186 ~~~~~~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          186 FLLEIFADILSSVRYLELRDTNL  208 (549)
T ss_dssp             THHHHHHHSTTTBSEEEEESCBC
T ss_pred             ccchhhHhhcccccEEEccCCcc
Confidence            33223335677777777777765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=4.8e-22  Score=149.97  Aligned_cols=192  Identities=23%  Similarity=0.300  Sum_probs=134.3

Q ss_pred             CCCccceeeecC---------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEec
Q 037027            9 PVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLR   79 (205)
Q Consensus         9 ~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   79 (205)
                      ..|++....|..         ..++++.|+++++.+....+..|+++++|+.|++++|.+....+..+..+++|++|+++
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            346777777742         23578999999999987778889999999999999999987778888888999999998


Q ss_pred             CcccccCCCccccCCCCccEEEcccccCCcccCcccccCCC---------------------------------------
Q 037027           80 GNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP---------------------------------------  120 (205)
Q Consensus        80 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~---------------------------------------  120 (205)
                      +|.+. ..+..+.  .+|++|++++|.+. .++...+..++                                       
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence            88776 3333221  34444444444443 22222223333                                       


Q ss_pred             -------CcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCC
Q 037027          121 -------FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAE  193 (205)
Q Consensus       121 -------~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~  193 (205)
                             +|+.+++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++
T Consensus       187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  265 (332)
T 2ft3_A          187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL  265 (332)
T ss_dssp             CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred             cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence                   3445555555554444456667777888888888777666667777888888888888887 66777888888


Q ss_pred             CcEEeccCCcCC
Q 037027          194 LELMSLFDNELQ  205 (205)
Q Consensus       194 L~~l~l~~n~l~  205 (205)
                      |+.|++++|+++
T Consensus       266 L~~L~l~~N~l~  277 (332)
T 2ft3_A          266 LQVVYLHTNNIT  277 (332)
T ss_dssp             CCEEECCSSCCC
T ss_pred             CCEEECCCCCCC
Confidence            888888888764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=9.1e-22  Score=145.78  Aligned_cols=178  Identities=26%  Similarity=0.198  Sum_probs=153.9

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      ..++++.++++++.++ .+|..+.  ++++.|++++|.+....+..+..+++|++|++.+|.++...+ . ..+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEE
Confidence            3447888999999887 5565553  689999999999997778889999999999999999874332 2 678999999


Q ss_pred             EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027          101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL  180 (205)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l  180 (205)
                      ++++|.+. .++..+ ..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++
T Consensus        83 ~Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             ECCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            99999997 777655 7889999999999999976668899999999999999999877777788899999999999999


Q ss_pred             cccCchhccCCCCCcEEeccCCcCC
Q 037027          181 QGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       181 ~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      ++..+..+..+++|+.|++++|.++
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC
Confidence            9776778899999999999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=4.1e-22  Score=156.17  Aligned_cols=115  Identities=25%  Similarity=0.278  Sum_probs=69.3

Q ss_pred             ccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccC
Q 037027           89 SFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVT  168 (205)
Q Consensus        89 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  168 (205)
                      ..+..+++|++|++++|.+. ......+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..++
T Consensus       293 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          293 SVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            33444555556666665555 23222235556666666666666554455566666666666666666655566666666


Q ss_pred             CceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          169 KLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       169 ~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +|++|++++|++++..+..+..+++|+.|++++|++
T Consensus       372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            677777777766655555566667777777777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=6.4e-22  Score=155.06  Aligned_cols=135  Identities=19%  Similarity=0.174  Sum_probs=84.6

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcce-eecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLS-GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      ++++.|+++++.+.+..|..|+++++|+.|++++|.+. ...+..|..+++|++|++++|.+....+..+..+.+|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            56888888888887666777788888888888877764 23355677777777777777777655566666666777777


Q ss_pred             cccccCCcccCc-ccccCCCCcceeeecccccccCCCCC-cCCCCcceEEEeecceee
Q 037027          102 LSYNALSGEIPA-NICSNLPFLEYISLSQNMFHGGIPSA-LSKCTYLQILGLSFNDFS  157 (205)
Q Consensus       102 l~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~  157 (205)
                      +++|.+.+..+. ..+..+++|++|++++|.+++..+.. +..+++|+.|++++|.+.
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            776666532221 12244555556666555555433332 444555555555554443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=2.1e-21  Score=146.35  Aligned_cols=193  Identities=21%  Similarity=0.242  Sum_probs=134.1

Q ss_pred             CCCccceeeecC---------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEec
Q 037027            9 PVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLR   79 (205)
Q Consensus         9 ~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   79 (205)
                      ..|.+....|..         ..+.++.|+++++.+.+..+..|+++++|+.|++++|.+....+..+..+++|++|+++
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            356777777742         23578899999999987777789999999999999999987778889999999999999


Q ss_pred             CcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeeccccccc--CCCCCcCCC--------------
Q 037027           80 GNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG--GIPSALSKC--------------  143 (205)
Q Consensus        80 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~--------------  143 (205)
                      +|.++ ..+..+.  .+|++|++++|.+. .++...+..+++|+.+++++|.+..  ..+..+..+              
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            99877 3443332  45666666666655 3333333445555555555554431  222333333              


Q ss_pred             -------CcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          144 -------TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       144 -------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                             ++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus       185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence                   45666666666665555667777788888888888887666667788888888888888763

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.88  E-value=1.4e-21  Score=154.14  Aligned_cols=112  Identities=20%  Similarity=0.186  Sum_probs=63.7

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      ..++++.|++++|.+....|..|+++++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            44567777777776665566666666777777777666664444455666666666666666554444555555555555


Q ss_pred             EcccccCCcccCcccccCCCCcceeeecccccc
Q 037027          101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFH  133 (205)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  133 (205)
                      ++.+|.+. .+....+..+++|+.|++++|.++
T Consensus       134 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A          134 EVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             EECCTTCC-EECTTSSTTCTTCCEEEEESCCCS
T ss_pred             ECCCCccc-eeChhhccCCCCCCEEECCCCcCc
Confidence            55555554 222222244444444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=2.3e-21  Score=146.10  Aligned_cols=181  Identities=22%  Similarity=0.271  Sum_probs=128.8

Q ss_pred             CCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecC---------------------ccccCCCCccEEEe
Q 037027           20 VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP---------------------SATFITHTLKYVDL   78 (205)
Q Consensus        20 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------------~~~~~l~~L~~L~l   78 (205)
                      ...++++.|+++++.+.+..|..|+++++|+.|++++|.+.....                     ..+..+++|++|++
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  152 (330)
T 1xku_A           73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL  152 (330)
T ss_dssp             TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred             ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence            355688999999998887778888889999999998887763211                     12334455555555


Q ss_pred             cCccccc--CCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeeccee
Q 037027           79 RGNQLSG--AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF  156 (205)
Q Consensus        79 ~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  156 (205)
                      .+|.+..  ..+..+..+++|++|++++|.+. .++...   .+.|+.+++++|.+++..+..+..+++|+.|++++|.+
T Consensus       153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  228 (330)
T 1xku_A          153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI  228 (330)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             CCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            5555432  33444555666666666666665 444433   25677777777777766667788888888888888888


Q ss_pred             ecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          157 SGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       157 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      .+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus       229 ~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             CEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            7666667778888888888888888 66777888888888888888764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=6.1e-22  Score=160.34  Aligned_cols=179  Identities=19%  Similarity=0.224  Sum_probs=92.4

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecC-ccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP-SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      +++.|++++|.+.. .|..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus       377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  455 (606)
T 3vq2_A          377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM  455 (606)
T ss_dssp             CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence            34444444444332 23444455555555555555543333 34445555555555555555444445555555555555


Q ss_pred             ccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccc
Q 037027          103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG  182 (205)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~  182 (205)
                      ++|.+.+......+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|+++ 
T Consensus       456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-  534 (606)
T 3vq2_A          456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-  534 (606)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-
T ss_pred             CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-
Confidence            5555543212222245555566666655555444555555555666666666555554555555556666666666555 


Q ss_pred             cCchhccCCC-CCcEEeccCCcC
Q 037027          183 EIPRELSNLA-ELELMSLFDNEL  204 (205)
Q Consensus       183 ~~~~~l~~~~-~L~~l~l~~n~l  204 (205)
                      .+|..+..++ +|+.+++++|++
T Consensus       535 ~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          535 TSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             CEESCGGGSCTTCCEEECCSCCC
T ss_pred             ccCHhHhhhcccCcEEEccCCCc
Confidence            3444455554 366666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=3.3e-22  Score=152.07  Aligned_cols=185  Identities=21%  Similarity=0.220  Sum_probs=140.5

Q ss_pred             cCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCC-ccccCCCCc
Q 037027           19 DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP-SFIFNKSSL   97 (205)
Q Consensus        19 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L   97 (205)
                      ....++++.|++++|.+.+..+..|+++++|+.|++++|.+....+..+..+++|++|++++|.+..... ..+..+++|
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L  151 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL  151 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence            3456789999999999987778889999999999999999985555558899999999999999884333 367889999


Q ss_pred             cEEEccccc-CCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeeccc----------------
Q 037027           98 QDLDLSYNA-LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI----------------  160 (205)
Q Consensus        98 ~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~----------------  160 (205)
                      ++|++++|. +. .++...+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+....                
T Consensus       152 ~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  230 (353)
T 2z80_A          152 QILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR  230 (353)
T ss_dssp             CEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred             cEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence            999999984 55 555555578899999999999988777778888777777777776543211                


Q ss_pred             ---------------------------------------CccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027          161 ---------------------------------------PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD  201 (205)
Q Consensus       161 ---------------------------------------~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~  201 (205)
                                                             |..+..+++|++|++++|+++......|..+++|++|++++
T Consensus       231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~  310 (353)
T 2z80_A          231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT  310 (353)
T ss_dssp             SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence                                                   11234456777777777777733333357777777777777


Q ss_pred             CcC
Q 037027          202 NEL  204 (205)
Q Consensus       202 n~l  204 (205)
                      |++
T Consensus       311 N~~  313 (353)
T 2z80_A          311 NPW  313 (353)
T ss_dssp             SCB
T ss_pred             CCc
Confidence            765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.4e-21  Score=140.68  Aligned_cols=161  Identities=22%  Similarity=0.246  Sum_probs=144.5

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      .+.++.|+++++.+.+..+..|+++++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            35789999999999988888899999999999999999977777889999999999999999977777788899999999


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +++|.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|++.
T Consensus       114 L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          114 LGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            9999998 677666688999999999999998766668999999999999999998777778889999999999999987


Q ss_pred             cc
Q 037027          182 GE  183 (205)
Q Consensus       182 ~~  183 (205)
                      ..
T Consensus       193 c~  194 (251)
T 3m19_A          193 CS  194 (251)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=8.7e-22  Score=159.41  Aligned_cols=183  Identities=19%  Similarity=0.169  Sum_probs=148.9

Q ss_pred             CCceEEEEEecCCccccc--CCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCC-ccccCCCCc
Q 037027           21 HSHRVTVFNVSGLNLTGT--IPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP-SFIFNKSSL   97 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L   97 (205)
                      ..++++.|++++|.+.+.  .+..+..+++|+.|++++|.+.. .+..+..+++|+.|++.+|.+....+ ..+..+++|
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  426 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL  426 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence            455677777777776644  36666777888888888888773 55777888889999999888876555 567788899


Q ss_pred             cEEEcccccCCcccCcccccCCCCcceeeeccccccc-CCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEee
Q 037027           98 QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLV  176 (205)
Q Consensus        98 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  176 (205)
                      ++|++++|.+.+..+..+ ..+++|+++++++|.+++ ..+..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus       427 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS  505 (606)
T ss_dssp             CEEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEECcCCCCCccchhhh-cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence            999999998874444444 788899999999999886 367888899999999999999887888888889999999999


Q ss_pred             cccccccCchhccCCCCCcEEeccCCcCC
Q 037027          177 RNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       177 ~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      +|++++..|..+..+++|+.|++++|.++
T Consensus       506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             SSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            99999877899999999999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.87  E-value=2.7e-21  Score=148.88  Aligned_cols=180  Identities=22%  Similarity=0.262  Sum_probs=103.3

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      ++++.|+++++.+....+..|+.+++|+.|++++|.+....+..+..+++|++|++.+|.+....+..+..+++|++|++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            45666777766666555556666666666666666666545555566666666666666665333333455566666666


Q ss_pred             ccccCCcccCcccccCCCCcceeeecccccccCC----------------------------------------------
Q 037027          103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGI----------------------------------------------  136 (205)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~----------------------------------------------  136 (205)
                      ++|.+. .+....+..+++|+.|++++|.++...                                              
T Consensus       149 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  227 (390)
T 3o6n_A          149 SNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  227 (390)
T ss_dssp             CSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred             CCCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence            666554 333222244455555555544433210                                              


Q ss_pred             -------------CCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027          137 -------------PSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       137 -------------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                                   ...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ++..+..+++|+.|++++|+
T Consensus       228 L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred             ccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCc
Confidence                         1123445667777777777666666666667777777777776663 34444556666666666665


Q ss_pred             C
Q 037027          204 L  204 (205)
Q Consensus       204 l  204 (205)
                      +
T Consensus       307 l  307 (390)
T 3o6n_A          307 L  307 (390)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=1.1e-21  Score=158.82  Aligned_cols=180  Identities=21%  Similarity=0.202  Sum_probs=88.2

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCc-cccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPS-ATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      +++.|++++|.+.+..+..|..+++|+.|++++|.+....+. .+..+++|++|++.+|.+....+..+..+++|++|++
T Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  456 (606)
T 3t6q_A          377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL  456 (606)
T ss_dssp             TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence            344444444444433344444444444444444444322221 2444444555555544444334444444555555555


Q ss_pred             ccccCCcc-cC-cccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027          103 SYNALSGE-IP-ANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL  180 (205)
Q Consensus       103 ~~~~~~~~-~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l  180 (205)
                      ++|.+.+. ++ ...+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..++.| ++++++|.+
T Consensus       457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l  535 (606)
T 3t6q_A          457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI  535 (606)
T ss_dssp             TTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred             CCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence            55544321 11 1122445555555555555554444555555555555555555555555555555555 555555555


Q ss_pred             cccCchhccCCCCCcEEeccCCcC
Q 037027          181 QGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       181 ~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      ++..+..+..+++|+.+++++|++
T Consensus       536 ~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          536 SIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             CCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             cccCHhhcccCCCCCEEeCCCCCc
Confidence            555555555555666666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=3.1e-21  Score=156.19  Aligned_cols=161  Identities=21%  Similarity=0.202  Sum_probs=69.0

Q ss_pred             CCCCCCCcEEEeecCcceeec--CccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCC
Q 037027           43 LGNLSSLQSLNLSFNRLSGSI--PSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP  120 (205)
Q Consensus        43 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  120 (205)
                      ++.+++|+.|++++|.+....  +..+..+++|++|++.+|.+....+..+..+++|++|++++|.+.+..+...+..++
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            334444444444444443222  333444444444444444444333444444444444444444443222222223444


Q ss_pred             CcceeeecccccccCCCCCcCCCCcceEEEeecceeecc---cCccccccCCceEEEeecccccccCchhccCCCCCcEE
Q 037027          121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA---IPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELM  197 (205)
Q Consensus       121 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l  197 (205)
                      +|+.+++++|.+....+..+..+++|+.|++++|.+.+.   .+..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence            444444444444433344444444444444444444321   11223344444444444444443334444444444444


Q ss_pred             eccCCc
Q 037027          198 SLFDNE  203 (205)
Q Consensus       198 ~l~~n~  203 (205)
                      ++++|+
T Consensus       506 ~Ls~N~  511 (606)
T 3t6q_A          506 DLSHNR  511 (606)
T ss_dssp             ECCSSC
T ss_pred             ECCCCc
Confidence            444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=9.1e-22  Score=144.54  Aligned_cols=161  Identities=24%  Similarity=0.193  Sum_probs=140.4

Q ss_pred             cCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCcc
Q 037027           19 DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ   98 (205)
Q Consensus        19 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   98 (205)
                      ....++++.|++++|.+.+.  +.+..+++|+.|++++|.+....+..+..+++|++|++.+|.+....+..+..+++|+
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            34567899999999998752  4688999999999999999976777788999999999999999876677788899999


Q ss_pred             EEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecc
Q 037027           99 DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN  178 (205)
Q Consensus        99 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  178 (205)
                      +|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|
T Consensus       137 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          137 YLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            9999999998 666665588999999999999998766677889999999999999998777777889999999999999


Q ss_pred             cccc
Q 037027          179 RLQG  182 (205)
Q Consensus       179 ~l~~  182 (205)
                      .+..
T Consensus       216 ~~~~  219 (272)
T 3rfs_A          216 PWDC  219 (272)
T ss_dssp             CBCC
T ss_pred             Cccc
Confidence            8764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.3e-21  Score=138.20  Aligned_cols=179  Identities=22%  Similarity=0.246  Sum_probs=145.3

Q ss_pred             CCCCCccceeeecC---------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEE
Q 037027            7 SSPVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVD   77 (205)
Q Consensus         7 ~~~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   77 (205)
                      ....|.|.++.|..         ..++++.|+++++.+....+..|+.+++|+.|++.+|.+....+..+..+++|++|+
T Consensus         3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A            3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN   82 (208)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence            44568888888843         234688999999998866677788999999999999999866666678899999999


Q ss_pred             ecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceee
Q 037027           78 LRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS  157 (205)
Q Consensus        78 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  157 (205)
                      +.+|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            9999988666666788899999999999987 566655578899999999999998666666888999999999998664


Q ss_pred             cccCccccccCCceEEEeecccccccCchhccCCCC
Q 037027          158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAE  193 (205)
Q Consensus       158 ~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~  193 (205)
                             ..+++++.+++..|.+++.+|..++.++.
T Consensus       162 -------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 -------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence                   34678888888999998888887776653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=3.9e-21  Score=144.98  Aligned_cols=184  Identities=20%  Similarity=0.188  Sum_probs=128.0

Q ss_pred             CCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee---------------------cCccccCCCCccEEEe
Q 037027           20 VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS---------------------IPSATFITHTLKYVDL   78 (205)
Q Consensus        20 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------------------~~~~~~~l~~L~~L~l   78 (205)
                      ...++++.|++++|.+.+..|..|+++++|+.|++++|.+...                     .+..+..+++|++|++
T Consensus        75 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  154 (332)
T 2ft3_A           75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM  154 (332)
T ss_dssp             TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred             hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence            3456777888888877766677777777777777777766521                     2223444555555555


Q ss_pred             cCccccc--CCCccccCC--------------------CCccEEEcccccCCcccCcccccCCCCcceeeecccccccCC
Q 037027           79 RGNQLSG--AFPSFIFNK--------------------SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI  136 (205)
Q Consensus        79 ~~~~~~~--~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  136 (205)
                      .+|.+..  ..+..+..+                    .+|++|++++|.+. .++...+..+++|+.|++++|.+++..
T Consensus       155 ~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~  233 (332)
T 2ft3_A          155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIE  233 (332)
T ss_dssp             CSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred             CCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence            5555431  222222211                    23444444444444 233233467889999999999998776


Q ss_pred             CCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccC------CCCCcEEeccCCcCC
Q 037027          137 PSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSN------LAELELMSLFDNELQ  205 (205)
Q Consensus       137 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~------~~~L~~l~l~~n~l~  205 (205)
                      +..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++..+..+..      .+.++.+++.+|+++
T Consensus       234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            778899999999999999988 67777889999999999999999766666654      367999999999863

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.86  E-value=2.2e-21  Score=155.90  Aligned_cols=183  Identities=20%  Similarity=0.225  Sum_probs=146.8

Q ss_pred             CCceEEEEEecCCcccccC--CCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCC-ccccCCCCc
Q 037027           21 HSHRVTVFNVSGLNLTGTI--PSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP-SFIFNKSSL   97 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L   97 (205)
                      ..++++.|+++++.+.+..  +..+..+++|+.|++++|.+....+. +..+++|++|++.+|.+....+ ..+..+++|
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            4456777777777765432  45566778888888888887744333 7788889999999888875444 456778899


Q ss_pred             cEEEcccccCCcccCcccccCCCCcceeeecccccc-cCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEee
Q 037027           98 QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH-GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLV  176 (205)
Q Consensus        98 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  176 (205)
                      ++|++++|.+.+..+ ..+..+++|+.|++++|.++ +..|..+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus       424 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          424 IYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             CEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEeCcCCcccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence            999999998874333 34478899999999999987 3577888999999999999999987778888899999999999


Q ss_pred             cccccccCchhccCCCCCcEEeccCCcCC
Q 037027          177 RNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       177 ~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      +|.+++..+..+..+++|+.|++++|+++
T Consensus       503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence            99999777788999999999999999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=5.5e-22  Score=148.44  Aligned_cols=178  Identities=24%  Similarity=0.280  Sum_probs=104.6

Q ss_pred             ceEEEEEecCCcccccCCCCC--CCCCCCcEEEeecCcce----------------------------eecCccccCCCC
Q 037027           23 HRVTVFNVSGLNLTGTIPSQL--GNLSSLQSLNLSFNRLS----------------------------GSIPSATFITHT   72 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~----------------------------~~~~~~~~~l~~   72 (205)
                      ++++.|++++|.+.+..|..+  +.+++|+.|++++|.+.                            ...+..+..+++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            355555555555554444443  45555555555555554                            333344444555


Q ss_pred             ccEEEecCcccccC--CCccc--cCCCCccEEEcccccCCc--ccCcccccCCCCcceeeecccccccCCC-CCcCCCCc
Q 037027           73 LKYVDLRGNQLSGA--FPSFI--FNKSSLQDLDLSYNALSG--EIPANICSNLPFLEYISLSQNMFHGGIP-SALSKCTY  145 (205)
Q Consensus        73 L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~  145 (205)
                      |++|++++|.+...  .+..+  ..+++|++|++++|.+.+  .++...+..+++|+.|++++|.+++..+ ..+..+++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            55555555543211  11111  344555555555555541  1122233455677777777777765443 44556778


Q ss_pred             ceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       146 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      |+.|++++|.+. .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus       255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            888888888876 5555554  7888888888888854 54 788888888888888874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=5.7e-22  Score=148.37  Aligned_cols=180  Identities=21%  Similarity=0.235  Sum_probs=130.7

Q ss_pred             eEEEEEecCCccc-ccCCCCCC-------CCCCCcEEEeecCcceeecCccc--cCCCCccEEEecCcccccCCCccccC
Q 037027           24 RVTVFNVSGLNLT-GTIPSQLG-------NLSSLQSLNLSFNRLSGSIPSAT--FITHTLKYVDLRGNQLSGAFPSFIFN   93 (205)
Q Consensus        24 ~l~~l~l~~~~~~-~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~   93 (205)
                      .++.|+++++.+. ...+..+.       ++++|+.|++++|.+.+..+..+  ..+++|++|++++|.++.. |..+..
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~  142 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE  142 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence            3777888888874 34555444       68999999999999987677765  8899999999999999855 666665


Q ss_pred             C-----CCccEEEcccccCCcccCcccccCCCCcceeeecccccccC--CCCC--cCCCCcceEEEeecceeec---ccC
Q 037027           94 K-----SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG--IPSA--LSKCTYLQILGLSFNDFSG---AIP  161 (205)
Q Consensus        94 l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~--~~~~~~L~~l~l~~~~~~~---~~~  161 (205)
                      +     ++|++|++++|.+. .++...+..+++|+.|++++|.+.+.  .+..  +..+++|+.|++++|.+.+   ...
T Consensus       143 l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  221 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS  221 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred             HHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence            5     88999999999987 45544447888999999999886532  1222  2677888888888887762   112


Q ss_pred             ccccccCCceEEEeecccccccCc-hhccCCCCCcEEeccCCcCC
Q 037027          162 KEIGNVTKLKELYLVRNRLQGEIP-RELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       162 ~~~~~~~~L~~l~l~~~~l~~~~~-~~l~~~~~L~~l~l~~n~l~  205 (205)
                      ..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++
T Consensus       222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            233456778888888887775543 44556677777777777653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=7.5e-21  Score=153.82  Aligned_cols=181  Identities=22%  Similarity=0.256  Sum_probs=123.5

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      .++++.|+++++.+.+..+..|+.+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            35688888888888777777788888888888888888766666677788888888888877744444456777777777


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccccCC---------------------------------------------
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI---------------------------------------------  136 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---------------------------------------------  136 (205)
                      +++|.+. .++...+..+++|+.|++++|.+++..                                             
T Consensus       154 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~  232 (597)
T 3oja_B          154 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV  232 (597)
T ss_dssp             CCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred             eeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence            7777776 333333355666666666666544211                                             


Q ss_pred             --------------CCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027          137 --------------PSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       137 --------------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                                    +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++ ++..+..+++|+.|++++|
T Consensus       233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N  311 (597)
T 3oja_B          233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN  311 (597)
T ss_dssp             CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence                          1224455677777777777776667777777777777777777763 3445555666666666666


Q ss_pred             cC
Q 037027          203 EL  204 (205)
Q Consensus       203 ~l  204 (205)
                      .+
T Consensus       312 ~l  313 (597)
T 3oja_B          312 HL  313 (597)
T ss_dssp             CC
T ss_pred             CC
Confidence            55

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.86  E-value=5.5e-21  Score=160.05  Aligned_cols=192  Identities=20%  Similarity=0.171  Sum_probs=162.4

Q ss_pred             CccceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcce-eecCccccCCCCccEEEecCcccccCCCc
Q 037027           11 CNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLS-GSIPSATFITHTLKYVDLRGNQLSGAFPS   89 (205)
Q Consensus        11 c~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~   89 (205)
                      +.+..+.+  .+++++.|++++|.+.+..+..|+++++|+.|++++|... ...+.+|..+++|++|++++|.+....|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            34444444  5568999999999999888999999999999999999543 34478899999999999999999877899


Q ss_pred             cccCCCCccEEEcccccCCcccCc-ccccCCCCcceeeecccccccCCC-CCcCCCCcceEEEeecceeecccCcccccc
Q 037027           90 FIFNKSSLQDLDLSYNALSGEIPA-NICSNLPFLEYISLSQNMFHGGIP-SALSKCTYLQILGLSFNDFSGAIPKEIGNV  167 (205)
Q Consensus        90 ~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  167 (205)
                      .+..+.+|++|++++|.+.+..+. ..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+..+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            999999999999999999754443 335889999999999999986544 578999999999999999987778787776


Q ss_pred             --CCceEEEeecccccccCchhccCCCC------CcEEeccCCcC
Q 037027          168 --TKLKELYLVRNRLQGEIPRELSNLAE------LELMSLFDNEL  204 (205)
Q Consensus       168 --~~L~~l~l~~~~l~~~~~~~l~~~~~------L~~l~l~~n~l  204 (205)
                        ++|++|+++.|.+.+..+..+..+++      |+.|++++|.+
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  216 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW  216 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence              89999999999998777777776665      99999999864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=3e-20  Score=152.28  Aligned_cols=180  Identities=21%  Similarity=0.198  Sum_probs=102.0

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecC-ccccCCCCccEEEecCccccc-----------------
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP-SATFITHTLKYVDLRGNQLSG-----------------   85 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-----------------   85 (205)
                      .++.|++++|.+.+..|..|+.+++|+.|++++|.+....+ ..+..+++|++|++++|.+..                 
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            45556666666555555555555666666666555543222 344444555555554444332                 


Q ss_pred             ---------CCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCC--------CCCcCCCCcceE
Q 037027           86 ---------AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI--------PSALSKCTYLQI  148 (205)
Q Consensus        86 ---------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--------~~~~~~~~~L~~  148 (205)
                               ..|..+..+.+|++|++++|.+. .++...+..+++|+.|++++|.++...        ...+..+++|+.
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~  540 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI  540 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence                     23444555666666666666665 444444456666666666666655321        112455666666


Q ss_pred             EEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          149 LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       149 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      |++++|.+....+..+..+++|+++++++|.++...+..|..+++|+.|++++|.+
T Consensus       541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence            66666666544344556666677777766666655555566666666666666655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=1.1e-20  Score=154.94  Aligned_cols=180  Identities=24%  Similarity=0.216  Sum_probs=151.3

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      +++++.|+++++.+.+..+..|+++++|+.|++++|.+....+.++..+++|++|++++|.+....+..+..+.+|++|+
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            35899999999999877777899999999999999999877788899999999999999999855555788999999999


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCcccc--ccCCceEEEeeccc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIG--NVTKLKELYLVRNR  179 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~~  179 (205)
                      +++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.  .+++|++|++++|.
T Consensus       104 L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          104 LMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             CCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            9999997 56655558899999999999999877778889999999999999998766555443  45899999999999


Q ss_pred             ccccCchhccCCCCCcEEeccCC
Q 037027          180 LQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       180 l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      +++..+..+..+++|+.+++.++
T Consensus       183 l~~~~~~~~~~l~~L~~L~l~~~  205 (680)
T 1ziw_A          183 IKEFSPGCFHAIGRLFGLFLNNV  205 (680)
T ss_dssp             CCCBCTTGGGGSSEECEEECTTC
T ss_pred             ccccChhhhhhhhhhhhhhcccc
Confidence            99877877776655555544443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=2.5e-20  Score=134.32  Aligned_cols=177  Identities=20%  Similarity=0.169  Sum_probs=147.7

Q ss_pred             CCCceEEEEEecCCc-ccccCCCCCCCCCCCcEEEeec-CcceeecCccccCCCCccEEEecCcccccCCCccccCCCCc
Q 037027           20 VHSHRVTVFNVSGLN-LTGTIPSQLGNLSSLQSLNLSF-NRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL   97 (205)
Q Consensus        20 ~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L   97 (205)
                      ...++++.|+++++. +....+..|+++++|+.|++++ |.+....+..|..+++|++|++.+|.++. .|. +..+.+|
T Consensus        52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L  129 (239)
T 2xwt_C           52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYST  129 (239)
T ss_dssp             TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBC
T ss_pred             cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccc
Confidence            356789999999997 8766677889999999999998 99987777789999999999999999884 555 7777778


Q ss_pred             c---EEEcccc-cCCcccCcccccCCCCcc-eeeecccccccCCCCCcCCCCcceEEEeecce-eecccCcccccc-CCc
Q 037027           98 Q---DLDLSYN-ALSGEIPANICSNLPFLE-YISLSQNMFHGGIPSALSKCTYLQILGLSFND-FSGAIPKEIGNV-TKL  170 (205)
Q Consensus        98 ~---~L~l~~~-~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~-~~L  170 (205)
                      +   +|++++| .+. .++...+..+++|+ .+++++|.++...+..+.. ++|+.|++++|. +.+..+..+..+ ++|
T Consensus       130 ~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L  207 (239)
T 2xwt_C          130 DIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGP  207 (239)
T ss_dssp             CSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred             ccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence            7   9999999 887 67766668899999 9999999998544445555 899999999995 876767788888 999


Q ss_pred             eEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027          171 KELYLVRNRLQGEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       171 ~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                      +++++++|++++ +|..  .+++|+.|++.++.
T Consensus       208 ~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          208 SLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             SEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             cEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence            999999999984 4443  67889999998763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.7e-20  Score=140.12  Aligned_cols=169  Identities=24%  Similarity=0.309  Sum_probs=118.6

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      ..++++.|++++|.+....+  +..+++|+.|++++|.+...  ..+..+++|++|++++|.+.. .+ .+..+++|++|
T Consensus        61 ~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L  134 (308)
T 1h6u_A           61 YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVL  134 (308)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEE
T ss_pred             ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEE
Confidence            45567777777777664333  67777777777777777632  356677778888887777763 22 26677778888


Q ss_pred             EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027          101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL  180 (205)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l  180 (205)
                      ++++|.+. .++.  +..+++|+.|++++|.+++. +. +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+
T Consensus       135 ~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          135 YLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             ECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCC
T ss_pred             ECCCCccC-cCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCcc
Confidence            88888776 3333  35677788888888877643 22 6777888888888887764333  66778888888888888


Q ss_pred             cccCchhccCCCCCcEEeccCCcC
Q 037027          181 QGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       181 ~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      .+..  .+..+++|+.|++++|++
T Consensus       208 ~~~~--~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          208 SDVS--PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CBCG--GGTTCTTCCEEEEEEEEE
T ss_pred             Cccc--cccCCCCCCEEEccCCee
Confidence            7443  377888888888888865

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=4.5e-21  Score=143.81  Aligned_cols=176  Identities=24%  Similarity=0.204  Sum_probs=106.1

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcc---------------------
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ---------------------   82 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---------------------   82 (205)
                      +++.|+++++.+....|..|+++++|+.|++++|.+....+  +..+++|++|++++|.                     
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~  112 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCS
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccC
Confidence            45555555555554444445555555555555555542221  4444445444444444                     


Q ss_pred             -------------------cccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCC
Q 037027           83 -------------------LSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKC  143 (205)
Q Consensus        83 -------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  143 (205)
                                         ++...+..+..+++|++|++++|.+.+..+..+...++.|+.|++++|.++.. + ....+
T Consensus       113 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l  190 (317)
T 3o53_A          113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVF  190 (317)
T ss_dssp             EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCC
T ss_pred             CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-ccccc
Confidence                               33223334444566666666666665323333334566777777777776543 2 22346


Q ss_pred             CcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          144 TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       144 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      ++|+.|++++|.+.+. +..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus       191 ~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          191 AKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             ccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            7788888888877643 444777888888888888888 55777788888888888888763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=3.4e-21  Score=156.83  Aligned_cols=179  Identities=18%  Similarity=0.304  Sum_probs=122.0

Q ss_pred             CCceEEEEEecCCccccc-----------------CCCCCC--CCCCCcEEEeecCcceeecCccccCCCCccEEEecCc
Q 037027           21 HSHRVTVFNVSGLNLTGT-----------------IPSQLG--NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGN   81 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   81 (205)
                      ..++++.|++++|.+++.                 +|+.++  ++++|+.|++++|.+....+..+..+++|++|++.+|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            456788888888888764                 787777  8888888888888877677777888888888888888


Q ss_pred             c-ccc-CCCccccCC------CCccEEEcccccCCcccCc--ccccCCCCcceeeecccccccCCCCCcCCCCcceEEEe
Q 037027           82 Q-LSG-AFPSFIFNK------SSLQDLDLSYNALSGEIPA--NICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGL  151 (205)
Q Consensus        82 ~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l  151 (205)
                      . ++. ..|..+..+      ++|++|++++|.+. .++.  .+ ..+++|+.|++++|.+++.+| .+..+++|+.|++
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence            7 654 455555444      67777777777776 6665  34 667777777777777765555 6666666777777


Q ss_pred             ecceeecccCccccccCC-ceEEEeecccccccCchhccCCC--CCcEEeccCCcC
Q 037027          152 SFNDFSGAIPKEIGNVTK-LKELYLVRNRLQGEIPRELSNLA--ELELMSLFDNEL  204 (205)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~-L~~l~l~~~~l~~~~~~~l~~~~--~L~~l~l~~n~l  204 (205)
                      ++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+  +|+.|++++|.+
T Consensus       361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI  414 (636)
T ss_dssp             CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence            776666 45555666666 666666666665 4455444332  555555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2.3e-21  Score=144.95  Aligned_cols=177  Identities=24%  Similarity=0.306  Sum_probs=109.8

Q ss_pred             eEEEEEecCCcccccCCCCC--CCCCCCcEEEeecCcceeecC----ccccCCCCccEEEecCcccccCCCccccCCCCc
Q 037027           24 RVTVFNVSGLNLTGTIPSQL--GNLSSLQSLNLSFNRLSGSIP----SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL   97 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L   97 (205)
                      +++.|++++|.+.+..|..+  +.+++|+.|++++|.+....+    ..+..+++|++|++++|.+....+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            47788888888877777766  777788888888877764222    233456777777777777765556666667777


Q ss_pred             cEEEcccccCCc---------------------------ccCcc---cccCCCCcceeeecccccccCCCCCcCCC---C
Q 037027           98 QDLDLSYNALSG---------------------------EIPAN---ICSNLPFLEYISLSQNMFHGGIPSALSKC---T  144 (205)
Q Consensus        98 ~~L~l~~~~~~~---------------------------~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~---~  144 (205)
                      ++|++++|.+.+                           .++..   .+..+++|++|++++|.+++..|+.+..+   +
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            777777776432                           11110   11234556666666666654445444444   4


Q ss_pred             cceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          145 YLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       145 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      +|+.|++++|.+. .+|..+  .++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus       252 ~L~~L~Ls~N~l~-~lp~~~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          252 ALNSLNLSFAGLE-QVPKGL--PAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TCCCEECCSSCCC-SCCSCC--CSCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             cCCEEECCCCCCC-chhhhh--cCCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            6666666666665 344443  25677777777766632 22 556677777777777663

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=149.70  Aligned_cols=159  Identities=25%  Similarity=0.299  Sum_probs=115.2

Q ss_pred             CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCccccc--CCCccccCCCCccEEEcccccCCcccCcccccCCCC
Q 037027           44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG--AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF  121 (205)
Q Consensus        44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  121 (205)
                      +.+++|+.|++++|.+.+..+..+..+++|++|++.+|.+..  ..+..+..+++|++|++++|.+.+.++...+..++.
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            456677777777777765566667777777777777777663  233456677777778887777764366554566777


Q ss_pred             cceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027          122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD  201 (205)
Q Consensus       122 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~  201 (205)
                      |+.+++++|.+++..+..+.  ++|+.|++++|.+. .+|..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT  477 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence            88888888877655444443  67888888888877 5666666888999999999998843334488889999999999


Q ss_pred             CcCC
Q 037027          202 NELQ  205 (205)
Q Consensus       202 n~l~  205 (205)
                      |+++
T Consensus       478 N~~~  481 (520)
T 2z7x_B          478 NPWD  481 (520)
T ss_dssp             SCBC
T ss_pred             CCCc
Confidence            9874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=1.7e-20  Score=150.77  Aligned_cols=179  Identities=20%  Similarity=0.170  Sum_probs=157.3

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      .+.++.|+++++.+....+..|+++++|+.|++++|.+....+.+|..+++|++|++.+|.+....+..+..+.+|++|+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            45799999999999877888899999999999999999877778899999999999999999877778889999999999


Q ss_pred             cccccCCcccCcccccCCCCcceeeeccccccc-CCCCCcCCCCcceEEEeecceeecccCccccccCCc----eEEEee
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKL----KELYLV  176 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L----~~l~l~  176 (205)
                      +++|.+. .++...+..+++|++|++++|.++. .+|..+..+++|+.|++++|.+.+..+..+..+++|    .+++++
T Consensus       107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            9999997 5555445889999999999999876 358889999999999999999987777778888888    899999


Q ss_pred             cccccccCchhccCCCCCcEEeccCC
Q 037027          177 RNRLQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       177 ~~~l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      +|.+++..+..+... +|+.+++++|
T Consensus       186 ~n~l~~~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          186 LNPMNFIQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             TCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred             CCCceecCHHHhccC-cceeEecccc
Confidence            999997777777766 7999999887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.84  E-value=3e-20  Score=149.32  Aligned_cols=159  Identities=26%  Similarity=0.340  Sum_probs=120.9

Q ss_pred             CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccC--CCccccCCCCccEEEcccccCCcccCcccccCCCC
Q 037027           44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGA--FPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF  121 (205)
Q Consensus        44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  121 (205)
                      +.+++|+.|++++|.+.+..+..+..+++|++|++.+|.++..  .+..+..+++|++|++++|.+.+.++...+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            5667788888888888766677778888888888888877642  23456678888888888888874466666677788


Q ss_pred             cceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027          122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD  201 (205)
Q Consensus       122 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~  201 (205)
                      |+.+++++|.+++..+..+.  ++|+.|++++|.+. .+|..+..+++|++|++++|++++..+..+..+++|+.+++++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~  506 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD  506 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence            88888888888755554443  67889999998887 5565666889999999999999843333488899999999999


Q ss_pred             CcCC
Q 037027          202 NELQ  205 (205)
Q Consensus       202 n~l~  205 (205)
                      |+++
T Consensus       507 N~~~  510 (562)
T 3a79_B          507 NPWD  510 (562)
T ss_dssp             CCBC
T ss_pred             CCcC
Confidence            9864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=8.8e-20  Score=130.68  Aligned_cols=154  Identities=23%  Similarity=0.229  Sum_probs=88.4

Q ss_pred             CCCCCCCCCCccceeeecCC---------CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCC
Q 037027            2 KNWNTSSPVCNWTGVTCDVH---------SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT   72 (205)
Q Consensus         2 ~~~~~~~~~c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   72 (205)
                      .+|......|.|.++.|...         .++++.|+++++.+.+..+..|..+++|+.|++++|.+....+..|..+++
T Consensus        10 ~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~   89 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ   89 (229)
T ss_dssp             -CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC
Confidence            46888999999999888531         234555666666555555555555566666666666555333344555556


Q ss_pred             ccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEee
Q 037027           73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLS  152 (205)
Q Consensus        73 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  152 (205)
                      |++|++++|.++...+..+..+++|++|++++|.+. .++..+ ..+++|+.|++++|.++...+..+..+++|+.|++.
T Consensus        90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A           90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            666666666555444444455555666666666555 444444 445555666666555554333445555555566655


Q ss_pred             cceee
Q 037027          153 FNDFS  157 (205)
Q Consensus       153 ~~~~~  157 (205)
                      +|++.
T Consensus       168 ~N~~~  172 (229)
T 3e6j_A          168 GNPWD  172 (229)
T ss_dssp             TSCBC
T ss_pred             CCCcc
Confidence            55543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=2.1e-20  Score=147.72  Aligned_cols=176  Identities=24%  Similarity=0.193  Sum_probs=102.8

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccc------------------
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS------------------   84 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------------   84 (205)
                      ++++.|+++++.+.+..|..|+.+++|+.|++++|.+....+  +..+++|++|++++|.++                  
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence            367777777777766566667777777777777777664332  555666666665555543                  


Q ss_pred             ----------------------cCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCC
Q 037027           85 ----------------------GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSK  142 (205)
Q Consensus        85 ----------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  142 (205)
                                            ...+..+..+++|++|++++|.+.+..+..+...++.|+.|++++|.+++..  .+..
T Consensus       112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~  189 (487)
T 3oja_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVV  189 (487)
T ss_dssp             CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCC
T ss_pred             CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--cccc
Confidence                                  2223333344555555555555543333333234555555666555554331  1223


Q ss_pred             CCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       143 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +++|+.|++++|.+.+. +..+..+++|+.|++++|.++ .+|..+..+++|+.+++++|++
T Consensus       190 l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred             CCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence            56666666666666543 334566677777777777776 3555666777777777777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=1e-19  Score=133.81  Aligned_cols=172  Identities=23%  Similarity=0.230  Sum_probs=137.8

Q ss_pred             EecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCC
Q 037027           29 NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALS  108 (205)
Q Consensus        29 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  108 (205)
                      +-.+.++. .+|..+.  ++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus        13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            33344443 4555443  57999999999999777778999999999999999998666778888999999999999997


Q ss_pred             cccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecc-cCccccccCCceEEEeecccccccCchh
Q 037027          109 GEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA-IPKEIGNVTKLKELYLVRNRLQGEIPRE  187 (205)
Q Consensus       109 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~l~~~~~~~  187 (205)
                       .++...+..+++|+++++++|.+....+..+..+++|+.|++++|.+.+. .|..+..+++|++|++++|.+++..+..
T Consensus        90 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           90 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             -EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             -ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence             55555558899999999999999876666789999999999999998753 5888899999999999999998766555


Q ss_pred             ccCCCCCc----EEeccCCcC
Q 037027          188 LSNLAELE----LMSLFDNEL  204 (205)
Q Consensus       188 l~~~~~L~----~l~l~~n~l  204 (205)
                      +..+++|+    .+++++|.+
T Consensus       169 ~~~l~~L~~l~l~L~ls~n~l  189 (276)
T 2z62_A          169 LRVLHQMPLLNLSLDLSLNPM  189 (276)
T ss_dssp             GHHHHTCTTCCEEEECCSSCC
T ss_pred             hhhhhhccccceeeecCCCcc
Confidence            65444444    556665554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=3.1e-20  Score=141.58  Aligned_cols=174  Identities=28%  Similarity=0.212  Sum_probs=145.4

Q ss_pred             EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCcccc-CCCCccEEEecCcccccCCCccccCCCCccEEEcccc
Q 037027           27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATF-ITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN  105 (205)
Q Consensus        27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  105 (205)
                      .++.+++.+. .+|..+  ...++.|++++|.+....+..+. .+++|++|++.+|.+....+..+..+++|++|++++|
T Consensus        22 ~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            5788888776 456544  24689999999999977777777 8999999999999998777778889999999999999


Q ss_pred             cCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccc---cccCCceEEEeecccccc
Q 037027          106 ALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI---GNVTKLKELYLVRNRLQG  182 (205)
Q Consensus       106 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~l~~  182 (205)
                      .+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+   ..+++|++|++++|.++.
T Consensus        99 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            997 6776666889999999999999987778889999999999999999985544444   568999999999999996


Q ss_pred             cCchhccCCCC--CcEEeccCCcC
Q 037027          183 EIPRELSNLAE--LELMSLFDNEL  204 (205)
Q Consensus       183 ~~~~~l~~~~~--L~~l~l~~n~l  204 (205)
                      ..+..+..++.  ++.|++.+|++
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             cCHHHhhhccHhhcceEEecCCCc
Confidence            66678888887  48899999986

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=1.7e-19  Score=128.42  Aligned_cols=150  Identities=23%  Similarity=0.288  Sum_probs=102.7

Q ss_pred             EEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccC
Q 037027           28 FNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNAL  107 (205)
Q Consensus        28 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  107 (205)
                      ++.+++.+. .+|..+.  ++++.|++.+|.+....+..|..+++|++|++++|.+....+..+..+.+|++|++++|.+
T Consensus        16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            455555554 3444332  5677777777777755555677777777777777777666666677777777777777777


Q ss_pred             CcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          108 SGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       108 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      . .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|++.
T Consensus        93 ~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           93 T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             C-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            6 566655566777777777777777655666777777777777777776555556666777777777777664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.1e-20  Score=141.29  Aligned_cols=155  Identities=21%  Similarity=0.244  Sum_probs=119.7

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee--c--CccccCCCCccEEEecCcccccCCCc----ccc
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS--I--PSATFITHTLKYVDLRGNQLSGAFPS----FIF   92 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~   92 (205)
                      ..++++.|++++|.+.+..+..|+.+++|+.|++++|.+...  .  ...+..+++|++|++++|.++ ..+.    .+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence            356888899998888877778888889999999999886421  1  223357788999999998876 2222    245


Q ss_pred             CCCCccEEEcccccCCcccCcccccCC---CCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCC
Q 037027           93 NKSSLQDLDLSYNALSGEIPANICSNL---PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTK  169 (205)
Q Consensus        93 ~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  169 (205)
                      .+++|++|++++|.+.+..+..+ ..+   ++|+.|++++|.++ .+|..+.  ++|+.|++++|.+.+. |. +..+++
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~  295 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE  295 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence            67999999999999985445444 333   79999999999998 5566553  7999999999999854 33 577899


Q ss_pred             ceEEEeecccccc
Q 037027          170 LKELYLVRNRLQG  182 (205)
Q Consensus       170 L~~l~l~~~~l~~  182 (205)
                      |++|++++|++++
T Consensus       296 L~~L~L~~N~l~~  308 (310)
T 4glp_A          296 VDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCEECSSTTTSC
T ss_pred             ccEEECcCCCCCC
Confidence            9999999999974

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=1e-19  Score=135.93  Aligned_cols=170  Identities=25%  Similarity=0.342  Sum_probs=143.2

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      ..++++.|+++++.+.. .+ .++.+++|+.|++++|.+.+..+  +..+++|++|++++|.+...  ..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            45689999999998874 34 57889999999999999985443  88999999999999998743  367889999999


Q ss_pred             EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027          101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL  180 (205)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l  180 (205)
                      ++++|.+. .++.  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+
T Consensus       113 ~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          113 DLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             ECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            99999997 4543  4789999999999999975432  7889999999999999875433  78899999999999999


Q ss_pred             cccCchhccCCCCCcEEeccCCcCC
Q 037027          181 QGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       181 ~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      ++..+  +..+++|++|++++|+++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCC
T ss_pred             CcChh--hcCCCCCCEEEccCCccC
Confidence            85433  889999999999999874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.83  E-value=4.4e-20  Score=139.88  Aligned_cols=169  Identities=21%  Similarity=0.318  Sum_probs=101.0

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS  103 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  103 (205)
                      +++.|++++|.+....+  +..+++|+.+++.+|.+.+..+  +..+++|++|++.+|.++.. +. +..+++|++|+++
T Consensus       178 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~  251 (347)
T 4fmz_A          178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIG  251 (347)
T ss_dssp             TCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECC
T ss_pred             CCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECC
Confidence            44444444444432111  3444445555555544442221  45566677777776666532 22 5566777777777


Q ss_pred             cccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccccc
Q 037027          104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGE  183 (205)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~  183 (205)
                      +|.+. .++ . +..+++|+.+++++|.+++.  +.+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++.
T Consensus       252 ~n~l~-~~~-~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          252 TNQIS-DIN-A-VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             SSCCC-CCG-G-GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             CCccC-CCh-h-HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            77665 332 2 35667777777777776542  3466677777777777777666666677777777777777777754


Q ss_pred             CchhccCCCCCcEEeccCCcCC
Q 037027          184 IPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       184 ~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      .+  +..+++|++|++++|+++
T Consensus       327 ~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          327 RP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GG--GGGCTTCSEESSSCC---
T ss_pred             cC--hhhhhccceeehhhhccc
Confidence            44  677777888888777764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=2.6e-20  Score=155.29  Aligned_cols=179  Identities=18%  Similarity=0.261  Sum_probs=142.4

Q ss_pred             CCCceEEEEEecCCcccc-----------------cCCCCCC--CCCCCcEEEeecCcceeecCccccCCCCccEEEecC
Q 037027           20 VHSHRVTVFNVSGLNLTG-----------------TIPSQLG--NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRG   80 (205)
Q Consensus        20 ~~~~~l~~l~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   80 (205)
                      ...++++.|++++|.+++                 .+|+.++  ++++|+.|++++|.+....|..+..+++|++|++.+
T Consensus       445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred             hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence            355789999999999987                 3888877  999999999999988778888899999999999999


Q ss_pred             cc-ccc-CCCccccC-------CCCccEEEcccccCCcccCc--ccccCCCCcceeeecccccccCCCCCcCCCCcceEE
Q 037027           81 NQ-LSG-AFPSFIFN-------KSSLQDLDLSYNALSGEIPA--NICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQIL  149 (205)
Q Consensus        81 ~~-~~~-~~~~~l~~-------l~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  149 (205)
                      |. ++. ..|..+..       +++|++|++++|.+. .++.  .+ ..+++|+.|++++|.++ .+| .+..+++|+.|
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l-~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L  600 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL  600 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH-TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh-hcCCCCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence            97 664 45554443       458999999999887 7776  44 77888999999988887 566 78888888899


Q ss_pred             EeecceeecccCccccccCC-ceEEEeecccccccCchhccCCCC--CcEEeccCCcC
Q 037027          150 GLSFNDFSGAIPKEIGNVTK-LKELYLVRNRLQGEIPRELSNLAE--LELMSLFDNEL  204 (205)
Q Consensus       150 ~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~l~~~~~~~l~~~~~--L~~l~l~~n~l  204 (205)
                      ++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+.  |+.|++++|.+
T Consensus       601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI  656 (876)
T ss_dssp             ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             ECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcC
Confidence            98888887 67777777887 888888888887 66666665543  77777777665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=1.9e-19  Score=150.82  Aligned_cols=87  Identities=21%  Similarity=0.235  Sum_probs=46.6

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCc--cccCCCCccEEEecCcccccCCC-ccccCCCCc
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPS--ATFITHTLKYVDLRGNQLSGAFP-SFIFNKSSL   97 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L   97 (205)
                      ..++++.|++++|.+.+..|..|+++++|+.|++++|.+.+..+.  .+..+++|++|++++|.+....+ ..+..+++|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            344556666666665555555566666666666666555532222  25555566666666655543322 344555555


Q ss_pred             cEEEcccccC
Q 037027           98 QDLDLSYNAL  107 (205)
Q Consensus        98 ~~L~l~~~~~  107 (205)
                      ++|++++|.+
T Consensus       151 ~~L~Ls~N~i  160 (844)
T 3j0a_A          151 KSIDFSSNQI  160 (844)
T ss_dssp             CEEEEESSCC
T ss_pred             CEEECCCCcC
Confidence            5555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.82  E-value=4.2e-19  Score=142.15  Aligned_cols=181  Identities=25%  Similarity=0.359  Sum_probs=153.0

Q ss_pred             CCCccceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCC
Q 037027            9 PVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP   88 (205)
Q Consensus         9 ~~c~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~   88 (205)
                      ..|.|.+. |          +.+++.++ .+|..+.  ++++.|++++|.+....+..+..+++|++|++++|.+....+
T Consensus         2 ~~C~~~~~-c----------~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~   67 (549)
T 2z81_A            2 LSCDASGV-C----------DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG   67 (549)
T ss_dssp             CEECTTSE-E----------ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT
T ss_pred             ccCCCCce-E----------ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh
Confidence            35777775 5          34455555 5565443  789999999999997778899999999999999999987777


Q ss_pred             ccccCCCCccEEEcccccCCcccCcccccCCCCcceeeeccccccc-CCCCCcCCCCcceEEEeeccee-ecccCccccc
Q 037027           89 SFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDF-SGAIPKEIGN  166 (205)
Q Consensus        89 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~  166 (205)
                      ..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++ ..+..+..+++|++|++++|.. ....+..+..
T Consensus        68 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  146 (549)
T 2z81_A           68 DAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG  146 (549)
T ss_dssp             TTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence            88999999999999999998 5666545889999999999999975 3457789999999999999984 4344467889


Q ss_pred             cCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          167 VTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       167 ~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus       147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             ccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            99999999999999988899999999999999998864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=2.3e-19  Score=127.70  Aligned_cols=151  Identities=23%  Similarity=0.225  Sum_probs=130.3

Q ss_pred             cEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecc
Q 037027           50 QSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQ  129 (205)
Q Consensus        50 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~  129 (205)
                      +.++..++.+. .+|..+.  +.++.|++.+|.+....+..+..+.+|++|++++|.+. .+....+..+++|+.|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCC
Confidence            56777777776 3444332  68999999999998777778889999999999999998 55444558899999999999


Q ss_pred             cccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          130 NMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       130 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      |.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            999866666788999999999999999988888899999999999999999977778899999999999999986

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=1.2e-19  Score=134.56  Aligned_cols=169  Identities=26%  Similarity=0.400  Sum_probs=140.8

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      ..++++.|+++++.+... + .++.+++|+.|++++|.+.+..+  +..+++|++|++.+|.+.. . ..+..+++|++|
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEE
Confidence            455789999999988643 3 47889999999999999985443  8899999999999999874 3 347889999999


Q ss_pred             EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027          101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL  180 (205)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l  180 (205)
                      ++++|.+. .++ .+ ..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+
T Consensus       118 ~L~~n~i~-~~~-~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          118 SLEHNGIS-DIN-GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             ECTTSCCC-CCG-GG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCC-CCh-hh-cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            99999997 443 33 6789999999999999754  678889999999999999876544  78899999999999999


Q ss_pred             cccCchhccCCCCCcEEeccCCcC
Q 037027          181 QGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       181 ~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      ++ ++ .+..+++|+.|++++|++
T Consensus       191 ~~-l~-~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          191 SD-LR-ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred             CC-Ch-hhccCCCCCEEECcCCcc
Confidence            84 34 488999999999999975

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=5.1e-19  Score=126.70  Aligned_cols=152  Identities=22%  Similarity=0.258  Sum_probs=118.7

Q ss_pred             EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccccc
Q 037027           27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA  106 (205)
Q Consensus        27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  106 (205)
                      .++.+++.+. .+|..+.  ++|+.|++++|.+....+..+..+++|++|++.+|.+....+..+..+++|++|++++|.
T Consensus        23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            4677777765 4555443  778899999998887677778888889999998888875555667778888888888888


Q ss_pred             CCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccccc
Q 037027          107 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGE  183 (205)
Q Consensus       107 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~  183 (205)
                      +. .++...+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+++|+++++.+|++...
T Consensus       100 l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          100 LT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            87 566665577888888888888887 5677777888888888888888766666677788888888888887743

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.82  E-value=4e-19  Score=142.78  Aligned_cols=106  Identities=27%  Similarity=0.407  Sum_probs=73.7

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      ++++.|++++|.+.+..+..|+++++|+.|++++|.+....+.+|..+++|++|++++|.++ .+|..  .+.+|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            57888888888887666677888888888888888888766777888888888888887776 33333  5666777777


Q ss_pred             ccccCCcccC-cccccCCCCcceeeeccccc
Q 037027          103 SYNALSGEIP-ANICSNLPFLEYISLSQNMF  132 (205)
Q Consensus       103 ~~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~  132 (205)
                      ++|.+. .++ ...+..+++|+.|++++|.+
T Consensus       129 s~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          129 SFNDFD-VLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             CSSCCS-BCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             CCCCcc-ccCchHhhcccCcccEEecCCCcc
Confidence            776665 322 12225555566666555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.81  E-value=1.5e-19  Score=146.61  Aligned_cols=158  Identities=20%  Similarity=0.157  Sum_probs=98.8

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      +.++.|++++|.++...+..|+++++|+.|++++|.+....+.+|..+++|++|++++|.++...+..|..+.+|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            35667777777766555566677777777777777766555566667777777777777666444455666677777777


Q ss_pred             ccccCCcccCcccccCCCCcceeeeccccccc-CCCCCcCCCCcceEEEeecceeecccCccccccCCc----eEEEeec
Q 037027          103 SYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKL----KELYLVR  177 (205)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L----~~l~l~~  177 (205)
                      ++|.+. .++...+..+++|++|++++|.++. ..+..+..+++|+.|++++|.+.+..+..+..+.++    ..++++.
T Consensus       132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            777665 4554444666677777777776654 234556666677777777776655545444433322    2455555


Q ss_pred             cccc
Q 037027          178 NRLQ  181 (205)
Q Consensus       178 ~~l~  181 (205)
                      |.+.
T Consensus       211 n~l~  214 (635)
T 4g8a_A          211 NPMN  214 (635)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            5555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=3.8e-19  Score=125.53  Aligned_cols=167  Identities=21%  Similarity=0.217  Sum_probs=131.5

Q ss_pred             EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccccc
Q 037027           27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA  106 (205)
Q Consensus        27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  106 (205)
                      .++..++.+. .+|..+  .++++.|++++|.+....+..+..+++|++|++.+|.+....+..+..+.+|++|++++|.
T Consensus        11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            4567776665 344333  4689999999999986666678889999999999999886656667789999999999999


Q ss_pred             CCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCch
Q 037027          107 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPR  186 (205)
Q Consensus       107 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~  186 (205)
                      +. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+...   
T Consensus        88 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---  163 (208)
T 2o6s_A           88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT---  163 (208)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC---
T ss_pred             CC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC---
Confidence            97 66666557889999999999999866666788899999999999998866666678899999999999987633   


Q ss_pred             hccCCCCCcEEeccCCcC
Q 037027          187 ELSNLAELELMSLFDNEL  204 (205)
Q Consensus       187 ~l~~~~~L~~l~l~~n~l  204 (205)
                          ++.|+.|++..|.+
T Consensus       164 ----~~~l~~L~~~~n~~  177 (208)
T 2o6s_A          164 ----CPGIRYLSEWINKH  177 (208)
T ss_dssp             ----TTTTHHHHHHHHHC
T ss_pred             ----CCCHHHHHHHHHhC
Confidence                34555555555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=6.8e-19  Score=140.13  Aligned_cols=85  Identities=26%  Similarity=0.174  Sum_probs=46.6

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCccccc-CCCccccCCCCccE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG-AFPSFIFNKSSLQD   99 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~   99 (205)
                      ..++++.|++++|.+.+..|..|+++++|+.|++++|.+.. ++..  .+++|++|++++|.++. ..|..+..+.+|++
T Consensus        43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~  119 (520)
T 2z7x_B           43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF  119 (520)
T ss_dssp             TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred             ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence            33455555665555554445555555666666666655552 2222  45556666666665553 23455556666666


Q ss_pred             EEcccccCC
Q 037027          100 LDLSYNALS  108 (205)
Q Consensus       100 L~l~~~~~~  108 (205)
                      |++++|.+.
T Consensus       120 L~L~~n~l~  128 (520)
T 2z7x_B          120 LGLSTTHLE  128 (520)
T ss_dssp             EEEEESSCC
T ss_pred             EEecCcccc
Confidence            666665543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.81  E-value=7.1e-19  Score=142.70  Aligned_cols=167  Identities=23%  Similarity=0.219  Sum_probs=139.3

Q ss_pred             cccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCc
Q 037027           34 NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPA  113 (205)
Q Consensus        34 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  113 (205)
                      +++ .+|..+.  ++++.|++++|.++...+.+|..+++|++|++++|.++...+..|..+++|++|++++|++. .++.
T Consensus        42 ~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~  117 (635)
T 4g8a_A           42 NFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLAL  117 (635)
T ss_dssp             CCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECG
T ss_pred             CcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCH
Confidence            444 4565442  47999999999999777789999999999999999998777778999999999999999998 7787


Q ss_pred             ccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeec-ccCccccccCCceEEEeecccccccCchhccCCC
Q 037027          114 NICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSG-AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLA  192 (205)
Q Consensus       114 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~  192 (205)
                      ..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.. ..|..+..+++|++|++++|++++..+..+..+.
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence            777999999999999999987666779999999999999999865 3567778899999999999999877777666543


Q ss_pred             C----CcEEeccCCcC
Q 037027          193 E----LELMSLFDNEL  204 (205)
Q Consensus       193 ~----L~~l~l~~n~l  204 (205)
                      +    ...++++.|++
T Consensus       198 ~l~~~~~~~~ls~n~l  213 (635)
T 4g8a_A          198 QMPLLNLSLDLSLNPM  213 (635)
T ss_dssp             TCTTCCCEEECTTCCC
T ss_pred             hhhhhhhhhhcccCcc
Confidence            3    33566666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.81  E-value=4.1e-19  Score=134.60  Aligned_cols=152  Identities=25%  Similarity=0.406  Sum_probs=104.2

Q ss_pred             CCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCc
Q 037027           43 LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL  122 (205)
Q Consensus        43 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  122 (205)
                      +..+++|+.|++++|.+.+..+  +..+++|+.+++.+|.+....+  +..+++|++|++++|.+. .++.  +..+++|
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L  245 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQL  245 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred             hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCC
Confidence            3344444444444444432111  4444555555555555442222  556677888888888776 3433  3677888


Q ss_pred             ceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027          123 EYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       123 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      +.+++++|.+++.  +.+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus       246 ~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          246 TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence            8888888887642  4577888899999998887643  45677889999999999998788888999999999999999


Q ss_pred             cCC
Q 037027          203 ELQ  205 (205)
Q Consensus       203 ~l~  205 (205)
                      +++
T Consensus       322 ~l~  324 (347)
T 4fmz_A          322 HIT  324 (347)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=3.7e-19  Score=126.67  Aligned_cols=152  Identities=16%  Similarity=0.197  Sum_probs=129.5

Q ss_pred             EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecC-ccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccc
Q 037027           27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP-SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN  105 (205)
Q Consensus        27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  105 (205)
                      .++++++.++ .+|..+  ...++.|++++|.+....+ ..|..+++|++|++.+|.++...+..+..+.+|++|++++|
T Consensus        15 ~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            5788888876 456554  3457899999999986644 46889999999999999998777778889999999999999


Q ss_pred             cCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccc
Q 037027          106 ALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG  182 (205)
Q Consensus       106 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~  182 (205)
                      .+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|++..
T Consensus        92 ~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           92 RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             ccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            997 6666666889999999999999987778889999999999999999987778888899999999999998874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=4.6e-19  Score=124.08  Aligned_cols=153  Identities=16%  Similarity=0.258  Sum_probs=119.0

Q ss_pred             CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcc
Q 037027           44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE  123 (205)
Q Consensus        44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  123 (205)
                      +.+++|+.|+++++.+. ..+ .+..+++|++|++.+|.+.  ....+..+++|++|++++|.+.+..+..+ ..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-cCCCCCC
Confidence            45677888888888887 333 5778888999999888664  23467778889999999998874445544 7788899


Q ss_pred             eeeecccccccCCCCCcCCCCcceEEEeecce-eecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027          124 YISLSQNMFHGGIPSALSKCTYLQILGLSFND-FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       124 ~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      .|++++|.+++..+..+..+++|+.|++++|. +. ..+ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence            99999998886666778888999999999997 54 344 57788999999999999985 33 7888999999999999


Q ss_pred             cCC
Q 037027          203 ELQ  205 (205)
Q Consensus       203 ~l~  205 (205)
                      +++
T Consensus       192 ~i~  194 (197)
T 4ezg_A          192 TIG  194 (197)
T ss_dssp             ---
T ss_pred             ccC
Confidence            874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=2.3e-18  Score=122.53  Aligned_cols=152  Identities=20%  Similarity=0.197  Sum_probs=122.9

Q ss_pred             CCCCCCccceeeecC---------CCceEEEEEecCCcccccCC-CCCCCCCCCcEEEeecCcceeecCccccCCCCccE
Q 037027            6 TSSPVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIP-SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKY   75 (205)
Q Consensus         6 ~~~~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   75 (205)
                      .+...|.|....|..         ..+.++.|+++++.+.+..+ ..|..+++|+.|++++|.+....+..|..+++|++
T Consensus         6 P~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A            6 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence            345567777777733         22357789999999886644 45788999999999999998777778899999999


Q ss_pred             EEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecce
Q 037027           76 VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFND  155 (205)
Q Consensus        76 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  155 (205)
                      |++++|.++...+..+..+++|++|++++|.+. .+....+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EECCCCccCccCHhHhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            999999998776777888999999999999998 4544444788999999999999987778888899999999999998


Q ss_pred             eec
Q 037027          156 FSG  158 (205)
Q Consensus       156 ~~~  158 (205)
                      +..
T Consensus       165 l~c  167 (220)
T 2v70_A          165 FNC  167 (220)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=4.5e-21  Score=144.71  Aligned_cols=178  Identities=20%  Similarity=0.169  Sum_probs=76.5

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee-cCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS-IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      +++.+++.++.+.+..+. +..+++|+.|++++|.+.+. .+..+..+++|++|++.+|.++...+..+..+++|++|++
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            445555555555433332 33455555555555554422 3334445555555555555544333444444555555555


Q ss_pred             ccc-cCCcccCcccccCCCCcceeeeccc-ccccC-CCCCcCCCC-cceEEEeecce--ee-cccCccccccCCceEEEe
Q 037027          103 SYN-ALSGEIPANICSNLPFLEYISLSQN-MFHGG-IPSALSKCT-YLQILGLSFND--FS-GAIPKEIGNVTKLKELYL  175 (205)
Q Consensus       103 ~~~-~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~~~--~~-~~~~~~~~~~~~L~~l~l  175 (205)
                      ++| .+++......+..+++|+.|++++| .+++. .+..+..++ +|+.|++++|.  +. +..+..+..+++|++|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            555 3332111111233444555555544 44321 222233344 44444444442  21 122223333444444444


Q ss_pred             eccc-ccccCchhccCCCCCcEEeccCC
Q 037027          176 VRNR-LQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       176 ~~~~-l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      ++|. +++..+..+..+++|++|++++|
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            4444 33333334444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=6.6e-19  Score=134.25  Aligned_cols=174  Identities=24%  Similarity=0.246  Sum_probs=142.0

Q ss_pred             CCCCCccceeeecC---------CCceEEEEEecCCcccccCCCCCC-CCCCCcEEEeecCcceeecCccccCCCCccEE
Q 037027            7 SSPVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLG-NLSSLQSLNLSFNRLSGSIPSATFITHTLKYV   76 (205)
Q Consensus         7 ~~~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   76 (205)
                      ....|.+....|..         ..+.++.|++++|.++...+..|. .+++|+.|++++|.+....+..|..+++|++|
T Consensus        14 ~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   93 (361)
T 2xot_A           14 ANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL   93 (361)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence            44556666666632         234588999999999977777787 89999999999999997777889999999999


Q ss_pred             EecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCc---CCCCcceEEEeec
Q 037027           77 DLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL---SKCTYLQILGLSF  153 (205)
Q Consensus        77 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~  153 (205)
                      ++++|.+....+..+..+.+|++|++++|.+. .+....+..+++|+.|++++|.++...+..+   ..+++|+.|++++
T Consensus        94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred             ECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence            99999998776777889999999999999998 5655555889999999999999986444444   5689999999999


Q ss_pred             ceeecccCccccccCC--ceEEEeeccccc
Q 037027          154 NDFSGAIPKEIGNVTK--LKELYLVRNRLQ  181 (205)
Q Consensus       154 ~~~~~~~~~~~~~~~~--L~~l~l~~~~l~  181 (205)
                      |.+....+..+..++.  ++.+++.+|++.
T Consensus       173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            9998655566666766  478999998875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=8.1e-19  Score=141.59  Aligned_cols=170  Identities=26%  Similarity=0.393  Sum_probs=138.0

Q ss_pred             CCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccE
Q 037027           20 VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQD   99 (205)
Q Consensus        20 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~   99 (205)
                      ...++++.|+++++.+.. ++ .++.+++|+.|++++|.+.+..+  +..+++|+.|++.+|.+.. . ..+..+++|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence            345578888999888763 33 47889999999999999885443  7889999999999998873 3 36778899999


Q ss_pred             EEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccc
Q 037027          100 LDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR  179 (205)
Q Consensus       100 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  179 (205)
                      |++++|.+. .++ . +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  +..+++|+.|+|++|.
T Consensus       114 L~Ls~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          114 LSLEHNGIS-DIN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EECTTSCCC-CCG-G-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEecCCCCC-CCc-c-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            999999987 443 2 36789999999999988753  678888999999999999876555  7788999999999999


Q ss_pred             ccccCchhccCCCCCcEEeccCCcC
Q 037027          180 LQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       180 l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +.+.  ..+..+++|+.|++++|++
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSEEE
T ss_pred             CCCC--hHHccCCCCCEEEccCCcC
Confidence            9853  4688899999999999875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=4.8e-18  Score=129.00  Aligned_cols=195  Identities=15%  Similarity=0.057  Sum_probs=140.4

Q ss_pred             CCCccceeeecC---------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee-cCccccCCCCccE-EE
Q 037027            9 PVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS-IPSATFITHTLKY-VD   77 (205)
Q Consensus         9 ~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~-L~   77 (205)
                      ..|.+..+.|..         ..++++.|++++|.++...+..|+++++|+.|++++|.+... .+.+|.++++++. +.
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            446777777732         235789999999999866667899999999999999998544 4457888888775 55


Q ss_pred             ecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecc-cccccCCCCCcCCC-CcceEEEeecce
Q 037027           78 LRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQ-NMFHGGIPSALSKC-TYLQILGLSFND  155 (205)
Q Consensus        78 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~-~~L~~l~l~~~~  155 (205)
                      +..+.+....+..+..+++|++|++.+|.+. .++...+.....+..+++.+ +.+....+..+..+ ..++.|++++|.
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence            5667887677788889999999999999987 55544334455566777755 34554444455554 357888888888


Q ss_pred             eecccCccccccCCceEEEeec-ccccccCchhccCCCCCcEEeccCCcCC
Q 037027          156 FSGAIPKEIGNVTKLKELYLVR-NRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       156 ~~~~~~~~~~~~~~L~~l~l~~-~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      +....+.. ...++++++++.+ |.++...+++|..+++|+.|++++|.|+
T Consensus       166 i~~i~~~~-f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          166 IQEIHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             CCEECTTS-STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             ccCCChhh-ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            87443333 3456788888875 4566444567788888888888888764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.78  E-value=3.3e-18  Score=134.56  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=16.1

Q ss_pred             cccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027          165 GNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       165 ~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                      ..+++|++|++++|.+.+..|  +..+++|+.|++++|+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  386 (466)
T ss_dssp             TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred             ccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence            334444444444444443322  4444444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=1.3e-20  Score=142.21  Aligned_cols=182  Identities=22%  Similarity=0.273  Sum_probs=145.7

Q ss_pred             CCceEEEEEecCCccccc-CCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCc-cccc-CCCccccCCCCc
Q 037027           21 HSHRVTVFNVSGLNLTGT-IPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGN-QLSG-AFPSFIFNKSSL   97 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~~L   97 (205)
                      ..++++.|++++|.+... .+..+..+++|+.|++++|.+.+..+..+..+++|++|++.+| .++. ..+..+..+++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            456899999999988754 6777888999999999999988767777888999999999999 5653 245556778999


Q ss_pred             cEEEcccc-cCCcccCcccccCCC-Ccceeeecccc--cc-cCCCCCcCCCCcceEEEeecce-eecccCccccccCCce
Q 037027           98 QDLDLSYN-ALSGEIPANICSNLP-FLEYISLSQNM--FH-GGIPSALSKCTYLQILGLSFND-FSGAIPKEIGNVTKLK  171 (205)
Q Consensus        98 ~~L~l~~~-~~~~~~~~~~~~~~~-~L~~l~l~~~~--~~-~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~  171 (205)
                      ++|++++| .+++......+..++ +|++|++++|.  ++ ...+..+..+++|+.|++++|. +.+..+..+..+++|+
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~  250 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  250 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence            99999999 886432233346788 99999999994  44 2345566778999999999998 6666777888899999


Q ss_pred             EEEeecc-cccccCchhccCCCCCcEEeccCC
Q 037027          172 ELYLVRN-RLQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       172 ~l~l~~~-~l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      +|++++| .+.+.....+..+++|+.|++++|
T Consensus       251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            9999999 455444457888999999999987

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.77  E-value=2.9e-18  Score=134.86  Aligned_cols=172  Identities=26%  Similarity=0.387  Sum_probs=143.0

Q ss_pred             cCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCcc
Q 037027           19 DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ   98 (205)
Q Consensus        19 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   98 (205)
                      ....++++.|+++++.+.+..+  ++.+++|+.|++++|.+.+.  ..+..+++|++|++.+|.+....+  +..+++|+
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  268 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT  268 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence            4456789999999998875544  67789999999999998743  467889999999999999874433  77889999


Q ss_pred             EEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecc
Q 037027           99 DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN  178 (205)
Q Consensus        99 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  178 (205)
                      +|++++|.+. .++.  +..++.|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|
T Consensus       269 ~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          269 ELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             EEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS
T ss_pred             EEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC
Confidence            9999999987 4443  4778999999999999875433  7788999999999999876554  678999999999999


Q ss_pred             cccccCchhccCCCCCcEEeccCCcCC
Q 037027          179 RLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       179 ~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      .+++.  ..++.+++|+.|++++|+++
T Consensus       342 ~l~~~--~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          342 KVSDV--SSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             CCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ccCCc--hhhccCCCCCEEeCCCCccC
Confidence            99854  57889999999999999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=4.1e-18  Score=119.25  Aligned_cols=153  Identities=20%  Similarity=0.267  Sum_probs=126.2

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      ..++++.|+++++.+. .++ .+..+++|+.|++++|.+.  ....+..+++|++|++++|.++...+..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            4457899999999887 445 5888999999999999776  33478889999999999999987678888899999999


Q ss_pred             EcccccCCcccCcccccCCCCcceeeecccc-cccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccc
Q 037027          101 DLSYNALSGEIPANICSNLPFLEYISLSQNM-FHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR  179 (205)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  179 (205)
                      ++++|.+.+..+..+ ..+++|+.|++++|. ++ .++ .+..+++|+.|++++|.+.+. + .+..+++|++|++++|+
T Consensus       118 ~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          118 DISHSAHDDSILTKI-NTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred             EecCCccCcHhHHHH-hhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence            999999985444444 789999999999998 65 334 688899999999999998753 3 67789999999999999


Q ss_pred             ccc
Q 037027          180 LQG  182 (205)
Q Consensus       180 l~~  182 (205)
                      +.+
T Consensus       193 i~~  195 (197)
T 4ezg_A          193 IGG  195 (197)
T ss_dssp             ---
T ss_pred             cCC
Confidence            863

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=6.9e-19  Score=131.90  Aligned_cols=176  Identities=23%  Similarity=0.186  Sum_probs=112.0

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS  103 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  103 (205)
                      .++..+++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            56666777776654444555667899999999999997777789999999999999999874433  7788899999999


Q ss_pred             cccCCcccCc----------------ccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccc-cc
Q 037027          104 YNALSGEIPA----------------NICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GN  166 (205)
Q Consensus       104 ~~~~~~~~~~----------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~  166 (205)
                      +|.+. .++.                .....+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+..+..+ ..
T Consensus        89 ~n~l~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  167 (317)
T 3o53_A           89 NNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS  167 (317)
T ss_dssp             SSEEE-EEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred             CCccc-cccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc
Confidence            98775 2221                001223445555555555554334445555556666666665554444333 24


Q ss_pred             cCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          167 VTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       167 ~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +++|++|++++|.+++. + ....+++|+.|++++|.+
T Consensus       168 l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          168 SDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKL  203 (317)
T ss_dssp             TTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCC
T ss_pred             cCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcC
Confidence            55666666666665533 1 222356666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=3e-18  Score=125.18  Aligned_cols=145  Identities=21%  Similarity=0.263  Sum_probs=69.7

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      ++++.|+++++.+. .++ .++.+++|+.|++++|.+.+..+  +..+++|++|++++|.++. .+.. .. .+|++|++
T Consensus        41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L  113 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFL  113 (263)
T ss_dssp             TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEEC
T ss_pred             CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEc
Confidence            34555555555544 222 34455555555555555543222  4555555555555555542 2211 11 45555555


Q ss_pred             ccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      ++|.+. .++ . +..+++|+.|++++|.+++.  +.+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus       114 ~~N~l~-~~~-~-l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          114 DNNELR-DTD-S-LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CSSCCS-BSG-G-GTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             cCCccC-CCh-h-hcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            555554 222 1 24455555555555555432  2344455555555555555433  33444555555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=3.5e-20  Score=142.45  Aligned_cols=134  Identities=18%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             CCccEEEecCccccc-CCC---ccccCCCCccEEEcccccCCcc----cCcccccCCCCcceeeecccccc----cCCCC
Q 037027           71 HTLKYVDLRGNQLSG-AFP---SFIFNKSSLQDLDLSYNALSGE----IPANICSNLPFLEYISLSQNMFH----GGIPS  138 (205)
Q Consensus        71 ~~L~~L~l~~~~~~~-~~~---~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~l~l~~~~~~----~~~~~  138 (205)
                      ++|++|++.+|.++. ..+   ..+..+++|++|++++|.+...    +....+..+++|+.|++++|.++    ..++.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            455555555554431 111   1233445555555555554311    11111234555666666666553    23344


Q ss_pred             CcCCCCcceEEEeecceeecc----cCccc--cccCCceEEEeecccccc----cCchhc-cCCCCCcEEeccCCcC
Q 037027          139 ALSKCTYLQILGLSFNDFSGA----IPKEI--GNVTKLKELYLVRNRLQG----EIPREL-SNLAELELMSLFDNEL  204 (205)
Q Consensus       139 ~~~~~~~L~~l~l~~~~~~~~----~~~~~--~~~~~L~~l~l~~~~l~~----~~~~~l-~~~~~L~~l~l~~n~l  204 (205)
                      .+..+++|+.|++++|.+.+.    ++..+  ..+++|++|++++|.+++    .++..+ .++++|++|++++|++
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            455555666666666655433    22333  225666666666666664    244444 4456666666666655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=5.8e-18  Score=133.78  Aligned_cols=157  Identities=23%  Similarity=0.182  Sum_probs=99.7

Q ss_pred             CCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcc--------
Q 037027           43 LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPAN--------  114 (205)
Q Consensus        43 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------  114 (205)
                      ...+++|+.|++++|.+....+..|..+++|++|++++|.++...+  +..+++|++|++++|.+. .++..        
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~L  106 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHA  106 (487)
T ss_dssp             STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEECTTCCEEEC
T ss_pred             cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCCCCcCEEEC
Confidence            3445689999999999997777889999999999999999875443  778889999999988775 22210        


Q ss_pred             --------cccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCcccc-ccCCceEEEeecccccccCc
Q 037027          115 --------ICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIG-NVTKLKELYLVRNRLQGEIP  185 (205)
Q Consensus       115 --------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~  185 (205)
                              ....+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|.+++. +
T Consensus       107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~  185 (487)
T 3oja_A          107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K  185 (487)
T ss_dssp             CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred             cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence                    011234455555555555544444455555555555555555544444443 455555556555555533 1


Q ss_pred             hhccCCCCCcEEeccCCcC
Q 037027          186 RELSNLAELELMSLFDNEL  204 (205)
Q Consensus       186 ~~l~~~~~L~~l~l~~n~l  204 (205)
                       ....+++|+.|++++|.+
T Consensus       186 -~~~~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          186 -GQVVFAKLKTLDLSSNKL  203 (487)
T ss_dssp             -CCCCCTTCCEEECCSSCC
T ss_pred             -ccccCCCCCEEECCCCCC
Confidence             122355666666666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.73  E-value=8.8e-17  Score=126.06  Aligned_cols=165  Identities=19%  Similarity=0.255  Sum_probs=91.0

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      .++++.|+++++.+.+. | .++.+++|+.|++++|.+...   .+..+++|++|++++|.++.. +  +..+++|++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            34566666666666532 3 355666666666666665532   155556666666666655532 2  44555666666


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccccCC-------------------CCCcCCCCcceEEEeecceeecccCc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI-------------------PSALSKCTYLQILGLSFNDFSGAIPK  162 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-------------------~~~~~~~~~L~~l~l~~~~~~~~~~~  162 (205)
                      +++|.+. .++   +..+++|+.+++++|.+++..                   .-.+..+++|+.|++++|.+.+ .+ 
T Consensus       113 L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~-  186 (457)
T 3bz5_A          113 CDTNKLT-KLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD-  186 (457)
T ss_dssp             CCSSCCS-CCC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC-
T ss_pred             CCCCcCC-eec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec-
Confidence            6666554 232   244555555555555554310                   0023445555666666665543 22 


Q ss_pred             cccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          163 EIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       163 ~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                       +..+++|++|++++|.+++.   .+..+++|+.|++++|.+
T Consensus       187 -l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l  224 (457)
T 3bz5_A          187 -VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL  224 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC
T ss_pred             -cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc
Confidence             45566666666666666633   256667777777777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=5.4e-17  Score=113.09  Aligned_cols=128  Identities=20%  Similarity=0.208  Sum_probs=76.6

Q ss_pred             cEEEeecCcceeecCccccCCCCccEEEecCcccccCCCc-cccCCCCccEEEcccccCCcccCcccccCCCCcceeeec
Q 037027           50 QSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPS-FIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS  128 (205)
Q Consensus        50 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~  128 (205)
                      +.++++++.+. .++..+.  .++++|++.+|.+....+. .+..+++|++|++++|.+. .+....+..+++|+.|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECC
Confidence            56666666665 3333322  2666677777666543332 2556666666666666665 3333333566666666666


Q ss_pred             ccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          129 QNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       129 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            66666555555666666666666666666555666666666666666666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.73  E-value=1.6e-16  Score=124.68  Aligned_cols=164  Identities=20%  Similarity=0.222  Sum_probs=113.8

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      ..++++.|++++|.+.+. +  ++.+++|+.|++++|.+...   .+..+++|++|++++|.++. .+  +..+++|++|
T Consensus        62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L  132 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL  132 (457)
T ss_dssp             GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred             ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence            445666677776666542 2  55666666666666666532   25556666666666665553 22  4445555555


Q ss_pred             EcccccCCc---------------------ccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecc
Q 037027          101 DLSYNALSG---------------------EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA  159 (205)
Q Consensus       101 ~l~~~~~~~---------------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  159 (205)
                      ++++|.+.+                     .+  . +..++.|+.+++++|.+++ ++  +..+++|+.|++++|.+.+.
T Consensus       133 ~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          133 NCARNTLTEIDVSHNTQLTELDCHLNKKITKL--D-VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             ECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--C-CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred             ECCCCccceeccccCCcCCEEECCCCCccccc--c-cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence            555554432                     22  1 2456788888888888875 33  77889999999999998754


Q ss_pred             cCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          160 IPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       160 ~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                         .+..+++|++|++++|++++ +|  +..+++|+.|++++|+++
T Consensus       207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          207 ---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             ---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred             ---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence               37789999999999999996 55  889999999999999874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=1.2e-16  Score=128.03  Aligned_cols=177  Identities=24%  Similarity=0.379  Sum_probs=107.5

Q ss_pred             CCCCCCCC-----cccee-eecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEE
Q 037027            4 WNTSSPVC-----NWTGV-TCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVD   77 (205)
Q Consensus         4 ~~~~~~~c-----~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   77 (205)
                      |.....+|     .|.++ .|..  .+++.|+++++.+.+ +|..+  +++|+.|++++|.+. .++   ..+++|++|+
T Consensus        36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~  106 (571)
T 3cvr_A           36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLD  106 (571)
T ss_dssp             HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred             HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence            66666667     46665 4532  256677777777664 44433  255666666666655 233   2345555555


Q ss_pred             ecCcccccCCCcccc------------------CCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCC
Q 037027           78 LRGNQLSGAFPSFIF------------------NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSA  139 (205)
Q Consensus        78 l~~~~~~~~~~~~l~------------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  139 (205)
                      +++|.++. +|. +.                  .+++|++|++++|.++ .++.    .+++|+.|++++|.+++ +|. 
T Consensus       107 Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-  177 (571)
T 3cvr_A          107 ACDNRLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-  177 (571)
T ss_dssp             CCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-
T ss_pred             ccCCCCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-
Confidence            55555542 332 22                  2345555555555554 2332    34567777777777764 444 


Q ss_pred             cCCCCcceEEEeecceeecccCccccccCCc-------eEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          140 LSKCTYLQILGLSFNDFSGAIPKEIGNVTKL-------KELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       140 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L-------~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      +.  ++|+.|++++|.+. .+|. +..  +|       ++|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus       178 l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          178 LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred             hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence            43  67888888888776 4444 432  66       88899999888 56777777999999999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.72  E-value=4e-19  Score=135.53  Aligned_cols=182  Identities=23%  Similarity=0.193  Sum_probs=103.2

Q ss_pred             ceEEEEEecCCcccccCC----CCCCCCC-CCcEEEeecCcceeecCccccCC-----CCccEEEecCcccccCCCcc--
Q 037027           23 HRVTVFNVSGLNLTGTIP----SQLGNLS-SLQSLNLSFNRLSGSIPSATFIT-----HTLKYVDLRGNQLSGAFPSF--   90 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~--   90 (205)
                      ++++.|++++|.+....+    ..+.+++ +|+.|++++|.+.+..+..+..+     ++|++|++++|.++...+..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            347777777777765444    5556666 67777777777765444444443     67777777777776444332  


Q ss_pred             --ccCC-CCccEEEcccccCCcccCccc---ccC-CCCcceeeecccccccCCC----CCcCCCC-cceEEEeecceeec
Q 037027           91 --IFNK-SSLQDLDLSYNALSGEIPANI---CSN-LPFLEYISLSQNMFHGGIP----SALSKCT-YLQILGLSFNDFSG  158 (205)
Q Consensus        91 --l~~l-~~L~~L~l~~~~~~~~~~~~~---~~~-~~~L~~l~l~~~~~~~~~~----~~~~~~~-~L~~l~l~~~~~~~  158 (205)
                        +..+ ++|++|++++|.+.+.....+   +.. ..+|++|++++|.+++...    ..+...+ +|+.|++++|.+.+
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              2333 667777777777653222221   122 2467777777776653222    2223333 66677777766654


Q ss_pred             ccCccc----ccc-CCceEEEeeccccccc----CchhccC-CCCCcEEeccCCcC
Q 037027          159 AIPKEI----GNV-TKLKELYLVRNRLQGE----IPRELSN-LAELELMSLFDNEL  204 (205)
Q Consensus       159 ~~~~~~----~~~-~~L~~l~l~~~~l~~~----~~~~l~~-~~~L~~l~l~~n~l  204 (205)
                      ..+..+    ..+ ++|++|++++|.+.+.    ++..+.. .++|++|++++|.+
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            443322    222 4666666666666642    2333333 34666666666655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=3.6e-17  Score=130.96  Aligned_cols=134  Identities=25%  Similarity=0.360  Sum_probs=97.6

Q ss_pred             CCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeee
Q 037027           48 SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISL  127 (205)
Q Consensus        48 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l  127 (205)
                      +++.|+++++.+.. ++..+  .++|++|++++|.++ .+|   ..+++|++|++++|.++ .++. + ..  +|+.|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l-~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-L-PA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-C-CT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-h-hc--CCCEEEC
Confidence            79999999999985 55544  378999999999998 555   34689999999999997 4665 4 32  7888888


Q ss_pred             cccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          128 SQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      ++|.+++ +|.   .+++|+.|++++|.+.+ +|.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.|+
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            8888875 444   46777788888777764 343   35677777777777764 444 44  66777777776653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=6e-17  Score=119.92  Aligned_cols=149  Identities=23%  Similarity=0.283  Sum_probs=127.0

Q ss_pred             CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcc
Q 037027           44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE  123 (205)
Q Consensus        44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  123 (205)
                      +.+++|+.|++.++.+...  ..+..+++|++|++++|.++...+  +..+++|++|++++|.+. .++.  +..+++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCC
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCC
Confidence            4578899999999998743  347889999999999999985433  788999999999999997 4443  47899999


Q ss_pred             eeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027          124 YISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       124 ~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                      .|++++|.+++.  +.+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            999999999753  5678899999999999998754  577889999999999999995544  8999999999999998


Q ss_pred             CC
Q 037027          204 LQ  205 (205)
Q Consensus       204 l~  205 (205)
                      ++
T Consensus       190 i~  191 (291)
T 1h6t_A          190 IS  191 (291)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=3.6e-19  Score=136.86  Aligned_cols=110  Identities=22%  Similarity=0.255  Sum_probs=57.7

Q ss_pred             CCccEEEcccccCCcccCc---ccccCCCCcceeeeccccccc-----CCCCCcCCCCcceEEEeecceee----cccCc
Q 037027           95 SSLQDLDLSYNALSGEIPA---NICSNLPFLEYISLSQNMFHG-----GIPSALSKCTYLQILGLSFNDFS----GAIPK  162 (205)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~----~~~~~  162 (205)
                      ++|++|++++|.+.+....   ..+..+++|++|++++|.++.     ..+..+..+++|+.|++++|.+.    ..++.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            4555555555554311111   111344556666666665542     12224555666666666666653    23444


Q ss_pred             cccccCCceEEEeeccccccc----CchhccC--CCCCcEEeccCCcC
Q 037027          163 EIGNVTKLKELYLVRNRLQGE----IPRELSN--LAELELMSLFDNEL  204 (205)
Q Consensus       163 ~~~~~~~L~~l~l~~~~l~~~----~~~~l~~--~~~L~~l~l~~n~l  204 (205)
                      .+..+++|++|++++|.+++.    ++..+..  +++|+.|++++|.+
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            555566666666666666543    3444432  66666666666655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=7.6e-17  Score=130.16  Aligned_cols=154  Identities=28%  Similarity=0.270  Sum_probs=129.6

Q ss_pred             cCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCcc
Q 037027           19 DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ   98 (205)
Q Consensus        19 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   98 (205)
                      ...+++|+.|++++|.+.+..+  +..+++|+.|++++|.+..  ...+..+++|+.|++.+|.+...  ..+..+++|+
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~  134 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE  134 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCS
T ss_pred             HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC--ChhhccCCCCCEEEecCCCCCCC--ccccCCCccC
Confidence            4466789999999999885444  8899999999999999984  34688999999999999998743  4577899999


Q ss_pred             EEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecc
Q 037027           99 DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN  178 (205)
Q Consensus        99 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  178 (205)
                      .|++++|.+. .+ . .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|
T Consensus       135 ~L~Ls~N~l~-~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          135 SLYLGNNKIT-DI-T-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             EEECCSSCCC-CC-G-GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSE
T ss_pred             EEECCCCccC-Cc-h-hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCC
Confidence            9999999997 44 3 34789999999999999986544  88999999999999998754  46788999999999999


Q ss_pred             cccccCc
Q 037027          179 RLQGEIP  185 (205)
Q Consensus       179 ~l~~~~~  185 (205)
                      .+.+...
T Consensus       208 ~l~~~p~  214 (605)
T 1m9s_A          208 ECLNKPI  214 (605)
T ss_dssp             EEECCCC
T ss_pred             cCcCCcc
Confidence            9885433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=6.6e-17  Score=110.22  Aligned_cols=132  Identities=22%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             CCCcEEEeecCcce-eecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCccee
Q 037027           47 SSLQSLNLSFNRLS-GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYI  125 (205)
Q Consensus        47 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  125 (205)
                      ++++.|++++|.+. ...+..+..+++|++|++.+|.+...  ..+..+++|++|++++|.+.+.++. .+..+++|+.|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCEE
Confidence            45666666666655 23444455556666666666655532  4444555556666665555422222 22345555555


Q ss_pred             eecccccccCCC-CCcCCCCcceEEEeecceeecccC---ccccccCCceEEEeeccccc
Q 037027          126 SLSQNMFHGGIP-SALSKCTYLQILGLSFNDFSGAIP---KEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       126 ~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~l~  181 (205)
                      ++++|.+++... ..+..+++|+.|++++|.+.+..+   ..+..+++|++|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            555555543211 344445555555555555443222   23444555555555555444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.70  E-value=8.7e-19  Score=133.65  Aligned_cols=178  Identities=21%  Similarity=0.194  Sum_probs=136.7

Q ss_pred             EEecCCcccccCCCCCCCCCCCcEEEeecCcceeecC----ccccCCC-CccEEEecCcccccCCCccccCC-----CCc
Q 037027           28 FNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP----SATFITH-TLKYVDLRGNQLSGAFPSFIFNK-----SSL   97 (205)
Q Consensus        28 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L   97 (205)
                      +.++++++++.+|+.+...++|+.|++++|.+.+..+    ..+..++ +|++|++++|.+....+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            5778888887778777777789999999999986555    6777888 89999999999986656655553     899


Q ss_pred             cEEEcccccCCcccCccc---ccCC-CCcceeeecccccccCCCCC----cCC-CCcceEEEeecceeecccCc----cc
Q 037027           98 QDLDLSYNALSGEIPANI---CSNL-PFLEYISLSQNMFHGGIPSA----LSK-CTYLQILGLSFNDFSGAIPK----EI  164 (205)
Q Consensus        98 ~~L~l~~~~~~~~~~~~~---~~~~-~~L~~l~l~~~~~~~~~~~~----~~~-~~~L~~l~l~~~~~~~~~~~----~~  164 (205)
                      ++|++++|.+.+..+..+   +... ++|+.|++++|.+++..+..    +.. .++|+.|++++|.+.+....    .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            999999999874333322   2334 78999999999998654433    333 36899999999998754333    33


Q ss_pred             cccC-CceEEEeecccccccCchh----ccCC-CCCcEEeccCCcCC
Q 037027          165 GNVT-KLKELYLVRNRLQGEIPRE----LSNL-AELELMSLFDNELQ  205 (205)
Q Consensus       165 ~~~~-~L~~l~l~~~~l~~~~~~~----l~~~-~~L~~l~l~~n~l~  205 (205)
                      ...+ +|++|++++|.+++..+..    +..+ ++|++|++++|.++
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            4444 9999999999998766644    4455 59999999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=5.7e-16  Score=107.96  Aligned_cols=127  Identities=25%  Similarity=0.270  Sum_probs=81.8

Q ss_pred             cEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecc
Q 037027           50 QSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQ  129 (205)
Q Consensus        50 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~  129 (205)
                      +.++++++.+. .++..+  .+++++|++.+|.++ ..+..+..+.+|++|++++|.+. .++...+..++.|+.|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence            45666666665 333322  246777777777766 45566666777777777777776 45544446667777777777


Q ss_pred             cccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          130 NMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       130 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      |.++...+..+..+++|+.|++++|.+....+..+..+++|+++++++|++.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            7776555556666777777777777766555555666677777777776664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=1.3e-15  Score=104.65  Aligned_cols=131  Identities=20%  Similarity=0.275  Sum_probs=91.3

Q ss_pred             CcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeec
Q 037027           49 LQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS  128 (205)
Q Consensus        49 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~  128 (205)
                      .+.+++.++.+.. .+..  ..++|++|++.++.+....+..+..+.+|++|++++|.+. .++...+..+++|+.|+++
T Consensus         9 ~~~l~~~~~~l~~-~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSS-CCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCcc-CCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence            4567777776662 3322  2357888888888777555555667778888888888776 5555555677778888888


Q ss_pred             ccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccccc
Q 037027          129 QNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGE  183 (205)
Q Consensus       129 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~  183 (205)
                      +|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|++...
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            8877755555667777888888888877755555556677888888888877643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=4.2e-16  Score=113.75  Aligned_cols=165  Identities=21%  Similarity=0.274  Sum_probs=134.5

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS  103 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  103 (205)
                      ++..++++++.+....  .+..+++|+.|++.+|.+.. .+ .+..+++|++|++++|.+....+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            4455667777665332  46778999999999999884 33 67889999999999999885433  7889999999999


Q ss_pred             cccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccccc
Q 037027          104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGE  183 (205)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~  183 (205)
                      +|.+. .++...  . ++|+.|++++|.+++.  +.+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+++.
T Consensus        94 ~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           94 RNRLK-NLNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SSCCS-CCTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCccC-CcCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            99997 555433  2 8899999999999753  4588899999999999998754 3 677899999999999999855


Q ss_pred             CchhccCCCCCcEEeccCCcC
Q 037027          184 IPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       184 ~~~~l~~~~~L~~l~l~~n~l  204 (205)
                        ..+..+++|+.|++++|++
T Consensus       166 --~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEE
T ss_pred             --HHhccCCCCCEEeCCCCcc
Confidence              7788999999999999975

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=2.4e-16  Score=107.41  Aligned_cols=134  Identities=19%  Similarity=0.129  Sum_probs=114.2

Q ss_pred             CCceEEEEEecCCccc-ccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccE
Q 037027           21 HSHRVTVFNVSGLNLT-GTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQD   99 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~   99 (205)
                      ..++++.|++++|.+. +.+|..+..+++|+.|++.+|.+...  ..+..+++|++|++++|.+....+..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3468999999999987 67788889999999999999999854  77889999999999999998667777777999999


Q ss_pred             EEcccccCCcccCc-ccccCCCCcceeeecccccccCCC---CCcCCCCcceEEEeecceee
Q 037027          100 LDLSYNALSGEIPA-NICSNLPFLEYISLSQNMFHGGIP---SALSKCTYLQILGLSFNDFS  157 (205)
Q Consensus       100 L~l~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~  157 (205)
                      |++++|.+. .++. ..+..+++|+.+++++|.+++..+   ..+..+++|+.|++.+|...
T Consensus       100 L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            999999997 4442 344789999999999999985543   37889999999999999775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.66  E-value=6.9e-19  Score=138.02  Aligned_cols=182  Identities=20%  Similarity=0.221  Sum_probs=117.8

Q ss_pred             eEEEEEecCCccccc----CCCCCCCCCCCcEEEeecCcceeec-----CccccCCCCccEEEecCcccccC----CCcc
Q 037027           24 RVTVFNVSGLNLTGT----IPSQLGNLSSLQSLNLSFNRLSGSI-----PSATFITHTLKYVDLRGNQLSGA----FPSF   90 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~   90 (205)
                      +++.|++++|.++..    ++..+..+++|+.|++++|.+.+..     +..+..+++|++|++.+|.++..    ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            556666666655432    2444455667777777777665322     11222466777777777766532    3444


Q ss_pred             ccCCCCccEEEcccccCCcccCc----ccccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeecccCc
Q 037027           91 IFNKSSLQDLDLSYNALSGEIPA----NICSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAIPK  162 (205)
Q Consensus        91 l~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~  162 (205)
                      +..+++|++|++++|.+.+....    ......++|+.|++++|.+++.    ++..+..+++|+.|++++|.+.+..+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            55577788888887776532221    1212235788888888877643    334456678889999999887654444


Q ss_pred             cccc-----cCCceEEEeecccccc----cCchhccCCCCCcEEeccCCcCC
Q 037027          163 EIGN-----VTKLKELYLVRNRLQG----EIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       163 ~~~~-----~~~L~~l~l~~~~l~~----~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      .+..     .++|++|++++|.+++    .++..+..+++|++|++++|+++
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            3332     5689999999998885    56777888899999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=1.4e-16  Score=106.49  Aligned_cols=128  Identities=22%  Similarity=0.245  Sum_probs=90.1

Q ss_pred             CCccEEEecCcccc-cCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEE
Q 037027           71 HTLKYVDLRGNQLS-GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQIL  149 (205)
Q Consensus        71 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  149 (205)
                      ++++.|++.+|.+. ...+..+..+++|++|++++|.+. .+  ..+..+++|+.+++++|.+++..|..+..+++|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            55666666666665 345555566777777777777775 33  233667777777777777765455556667788888


Q ss_pred             Eeecceeecc-cCccccccCCceEEEeecccccccCc---hhccCCCCCcEEeccC
Q 037027          150 GLSFNDFSGA-IPKEIGNVTKLKELYLVRNRLQGEIP---RELSNLAELELMSLFD  201 (205)
Q Consensus       150 ~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~l~~~~~---~~l~~~~~L~~l~l~~  201 (205)
                      ++++|.+.+. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8888877643 23667788889999999998886554   5788888999888764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.65  E-value=5.8e-16  Score=125.27  Aligned_cols=158  Identities=27%  Similarity=0.394  Sum_probs=100.0

Q ss_pred             CCCCCCCCccceee------ecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEE
Q 037027            4 WNTSSPVCNWTGVT------CDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVD   77 (205)
Q Consensus         4 ~~~~~~~c~~~~~~------~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   77 (205)
                      |....++|.|.+..      |.+...+++.++++++.++ .+|..+.  ++|+.|++++|.+. .++.   .+++|++|+
T Consensus        15 W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~   87 (622)
T 3g06_A           15 WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLE   87 (622)
T ss_dssp             HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred             HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEE
Confidence            76777888874422      2333446788888888887 5565554  68888888888877 3333   567888888


Q ss_pred             ecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceee
Q 037027           78 LRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS  157 (205)
Q Consensus        78 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  157 (205)
                      +++|.++ .+|.   .+++|++|++++|.+. .++.    .+++|+.|++++|.++. +|..   +++|+.|++++|.+.
T Consensus        88 Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A           88 VSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA  154 (622)
T ss_dssp             ECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             cCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence            8888876 3443   4677888888888776 4443    34566666666666653 3332   255666666666554


Q ss_pred             cccCc---cc--------------cccCCceEEEeecccccc
Q 037027          158 GAIPK---EI--------------GNVTKLKELYLVRNRLQG  182 (205)
Q Consensus       158 ~~~~~---~~--------------~~~~~L~~l~l~~~~l~~  182 (205)
                      + +|.   .+              ..+++|+.|++++|.+++
T Consensus       155 ~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~  195 (622)
T 3g06_A          155 S-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS  195 (622)
T ss_dssp             C-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred             C-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC
Confidence            2 111   11              123667777777777763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=1.3e-15  Score=114.56  Aligned_cols=103  Identities=17%  Similarity=0.159  Sum_probs=69.6

Q ss_pred             CCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcce-EEEeecceeecccCccccccCCceE
Q 037027           94 KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQ-ILGLSFNDFSGAIPKEIGNVTKLKE  172 (205)
Q Consensus        94 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~  172 (205)
                      +.+|+++++++|++. .++...|.++.+|+.+++..+ ++...+.+|..+++|+ .+++.+ .+....+..|..+++|++
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            456777777776666 666666677777777777665 5545556677777777 777766 444455667777777777


Q ss_pred             EEeecccccccCchhccCCCCCcEEec
Q 037027          173 LYLVRNRLQGEIPRELSNLAELELMSL  199 (205)
Q Consensus       173 l~l~~~~l~~~~~~~l~~~~~L~~l~l  199 (205)
                      +++..+.++.....+|.++++|+.++.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            777777777566667777777777653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.65  E-value=7e-15  Score=118.99  Aligned_cols=77  Identities=26%  Similarity=0.299  Sum_probs=57.8

Q ss_pred             CCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEec
Q 037027          120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSL  199 (205)
Q Consensus       120 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l  199 (205)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|.+. .+|.   .+++|++|++++|.++ .+|..+..+++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            456666666666653 33   34467778888888776 3443   4678999999999998 77888999999999999


Q ss_pred             cCCcCC
Q 037027          200 FDNELQ  205 (205)
Q Consensus       200 ~~n~l~  205 (205)
                      ++|+++
T Consensus       292 ~~N~l~  297 (622)
T 3g06_A          292 EGNPLS  297 (622)
T ss_dssp             CSCCCC
T ss_pred             cCCCCC
Confidence            999874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=2e-15  Score=105.11  Aligned_cols=130  Identities=25%  Similarity=0.296  Sum_probs=110.3

Q ss_pred             EEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCc-cccCCCCccEEEecCcccccCCCccccCCCCccEEEccc
Q 037027           26 TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPS-ATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSY  104 (205)
Q Consensus        26 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  104 (205)
                      +.++++++.+. .+|..+.  .+++.|++.+|.+....+. .+..+++|++|++++|.++...+..+..+.+|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            35788888875 5666553  3899999999999855543 488999999999999999977788899999999999999


Q ss_pred             ccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecc
Q 037027          105 NALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA  159 (205)
Q Consensus       105 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  159 (205)
                      |.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus        88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            9998 55555558899999999999999988888999999999999999988643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.63  E-value=4.4e-18  Score=133.49  Aligned_cols=181  Identities=23%  Similarity=0.256  Sum_probs=99.3

Q ss_pred             eEEEEEecCCcccc----cCCCCCCCCCCCcEEEeecCcceeecCccc-----cCCCCccEEEecCcccccCC----Ccc
Q 037027           24 RVTVFNVSGLNLTG----TIPSQLGNLSSLQSLNLSFNRLSGSIPSAT-----FITHTLKYVDLRGNQLSGAF----PSF   90 (205)
Q Consensus        24 ~l~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~----~~~   90 (205)
                      +++.|++++|.+..    .++..+..+++|+.|++++|.+.+.....+     ...++|++|++.+|.++...    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            46666666666552    235555666666666666666543222211     12345666666666555322    333


Q ss_pred             ccCCCCccEEEcccccCCcccCcccc----cCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeeccc--
Q 037027           91 IFNKSSLQDLDLSYNALSGEIPANIC----SNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAI--  160 (205)
Q Consensus        91 l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~--  160 (205)
                      +..+++|++|++++|.+.+.....+.    ...++|+.|++++|.+++.    ++..+..+++|+.|++++|.+.+..  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            34456677777777665422222111    1234677777777766542    2344555667777777777664322  


Q ss_pred             ---CccccccCCceEEEeeccccccc----CchhccCCCCCcEEeccCCcC
Q 037027          161 ---PKEIGNVTKLKELYLVRNRLQGE----IPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       161 ---~~~~~~~~~L~~l~l~~~~l~~~----~~~~l~~~~~L~~l~l~~n~l  204 (205)
                         +.....+++|++|++++|.+++.    ++..+..+++|++|++++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence               11222356777777777766643    345555666777777776654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.63  E-value=1.2e-14  Score=113.96  Aligned_cols=139  Identities=24%  Similarity=0.339  Sum_probs=73.4

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS  103 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  103 (205)
                      +++.|++++|.+.+ +| .|+++++|+.|++++|.+.. .+..   ..+|++|++.+|.++. .+ .+..+++|++|+++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            55666666666553 44 36666666666666666552 2221   2356666666666553 33 35556666666666


Q ss_pred             cccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +|.+. .++.    ..++|+.+++++|.+. .+| .+..+++|+.|++++|.+.+ .|..   .++|++|++++|.++
T Consensus       204 ~N~l~-~l~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          204 NNSLK-KLPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT  270 (454)
T ss_dssp             SSCCS-SCCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred             CCcCC-cCCC----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence            66554 2322    1235566666666555 333 25566666666666665543 2211   244444544444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=3.2e-16  Score=104.68  Aligned_cols=108  Identities=18%  Similarity=0.187  Sum_probs=53.4

Q ss_pred             ceEEEEEecCCccc-ccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           23 HRVTVFNVSGLNLT-GTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        23 ~~l~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      ++++.|+++++.+. +.+|..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            35556666666655 44555555566666666666655532  4444555555555555555433344443455555555


Q ss_pred             cccccCCcccC-cccccCCCCcceeeecccccc
Q 037027          102 LSYNALSGEIP-ANICSNLPFLEYISLSQNMFH  133 (205)
Q Consensus       102 l~~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~  133 (205)
                      +++|.+. .++ ...+..+++|+.+++++|.++
T Consensus        95 ls~N~i~-~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           95 LSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             CTTSCCC-SHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CCCCcCC-ChHHHHHHhhCCCCCEEeCcCCccc
Confidence            5555544 211 011233444444444444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.62  E-value=1.3e-14  Score=113.71  Aligned_cols=159  Identities=28%  Similarity=0.399  Sum_probs=80.8

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL  102 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  102 (205)
                      ++++.|+++++.+.+ +|+.   ..+|+.|++++|.+.. .+.   ..++|++|++++|.++. .| .+..+.+|++|++
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l  160 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV  160 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence            456677777766664 3432   2456666666665542 111   11456666666666653 34 3555666666666


Q ss_pred             ccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccc
Q 037027          103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG  182 (205)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~  182 (205)
                      ++|.+. .++..    ..+|+++++++|.+++ +| .+..+++|+.|++++|.+.+ .|..   .++|++|++++|.++ 
T Consensus       161 ~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-  228 (454)
T 1jl5_A          161 DNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-  228 (454)
T ss_dssp             CSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred             CCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence            666655 33321    2356666666665553 23 35555555555555555542 2211   134555555555444 


Q ss_pred             cCchhccCCCCCcEEeccCCcC
Q 037027          183 EIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       183 ~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      .+| .+..+++|++|++++|.+
T Consensus       229 ~lp-~~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          229 ELP-ELQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             SCC-CCTTCTTCCEEECCSSCC
T ss_pred             ccc-ccCCCCCCCEEECCCCcC
Confidence            333 244444455555544443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=7.4e-17  Score=132.96  Aligned_cols=159  Identities=24%  Similarity=0.273  Sum_probs=87.6

Q ss_pred             ceEEEEEecCCcccccCCCCCCCCCCCcEE-----EeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCc
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSL-----NLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL   97 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L-----~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L   97 (205)
                      ++++.+++.++.+.. .+..+.....|+.+     ++..+.+. ..+..+..+..|+.|++++|.+. .++..+..+.+|
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            467778887777653 23322222222222     22223333 34556777788888888888877 556556677888


Q ss_pred             cEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeec
Q 037027           98 QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVR  177 (205)
Q Consensus        98 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  177 (205)
                      ++|++++|.+. .++..+ ..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. .+|..+..+++|++|+|++
T Consensus       250 ~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred             CEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence            88888888887 677655 67788888888888887 56777778888888888888776 5566677788888888888


Q ss_pred             ccccccCchhc
Q 037027          178 NRLQGEIPREL  188 (205)
Q Consensus       178 ~~l~~~~~~~l  188 (205)
                      |.+.+.+|..+
T Consensus       326 N~l~~~~p~~~  336 (727)
T 4b8c_D          326 NPLEKQFLKIL  336 (727)
T ss_dssp             SCCCSHHHHHH
T ss_pred             CccCCCChHHH
Confidence            88876555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=1.2e-14  Score=101.18  Aligned_cols=126  Identities=25%  Similarity=0.276  Sum_probs=108.1

Q ss_pred             EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccccc
Q 037027           27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA  106 (205)
Q Consensus        27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  106 (205)
                      .++++++.+. .+|..+  .++++.|++++|.+. .++..+..+++|++|++++|.++...+..|..+.+|++|++++|.
T Consensus        14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            5778888776 556544  368999999999998 566889999999999999999997777788999999999999999


Q ss_pred             CCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceee
Q 037027          107 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS  157 (205)
Q Consensus       107 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  157 (205)
                      +. .++...+..+++|+.|++++|.++...+..+..+++|+.|++.+|++.
T Consensus        90 l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            98 666655688999999999999998666667889999999999999875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.61  E-value=4.9e-15  Score=112.43  Aligned_cols=173  Identities=19%  Similarity=0.095  Sum_probs=121.1

Q ss_pred             CCCceEEEEEecCCcccccC-CCCCCCCCCCcE-EEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCc
Q 037027           20 VHSHRVTVFNVSGLNLTGTI-PSQLGNLSSLQS-LNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL   97 (205)
Q Consensus        20 ~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L   97 (205)
                      ...++++.|++++|.+.+.+ +..|.++++++. +.+..|.+....+..|..+++|++|++.+|.+....+..+....++
T Consensus        51 ~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l  130 (350)
T 4ay9_X           51 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK  130 (350)
T ss_dssp             TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC
T ss_pred             cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchh
Confidence            45678999999999986554 456788888776 5667788887778889999999999999999875545455555667


Q ss_pred             cEEEccc-ccCCcccCcccccCCC-CcceeeecccccccCCCCCcCCCCcceEEEeec-ceeecccCccccccCCceEEE
Q 037027           98 QDLDLSY-NALSGEIPANICSNLP-FLEYISLSQNMFHGGIPSALSKCTYLQILGLSF-NDFSGAIPKEIGNVTKLKELY  174 (205)
Q Consensus        98 ~~L~l~~-~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~  174 (205)
                      ..+++.. +.+. .++...+..+. .++.+++++|.++...+..+ ...+++.+++.+ |.+....+..+..+++|++|+
T Consensus       131 ~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld  208 (350)
T 4ay9_X          131 VLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  208 (350)
T ss_dssp             EEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred             hhhhhccccccc-cccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence            7777765 4554 55554444443 57788888888874433333 456788888875 455544445677888888888


Q ss_pred             eecccccccCchhccCCCCC
Q 037027          175 LVRNRLQGEIPRELSNLAEL  194 (205)
Q Consensus       175 l~~~~l~~~~~~~l~~~~~L  194 (205)
                      +++|+++...+..+.++++|
T Consensus       209 Ls~N~l~~lp~~~~~~L~~L  228 (350)
T 4ay9_X          209 ISRTRIHSLPSYGLENLKKL  228 (350)
T ss_dssp             CTTSCCCCCCSSSCTTCCEE
T ss_pred             cCCCCcCccChhhhccchHh
Confidence            88888874444444444333

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=1.1e-14  Score=99.93  Aligned_cols=129  Identities=22%  Similarity=0.217  Sum_probs=105.1

Q ss_pred             EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccccc
Q 037027           27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA  106 (205)
Q Consensus        27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  106 (205)
                      .++++++++. .+|..+  .++++.|++.+|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.
T Consensus        11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            3555566665 344333  3689999999999986666678899999999999999986666667889999999999999


Q ss_pred             CCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecc
Q 037027          107 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA  159 (205)
Q Consensus       107 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  159 (205)
                      +. .++...+..+++|+.+++++|.++...+..+..+++|+.|++++|++...
T Consensus        88 l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           88 LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            98 66666557889999999999999866556678899999999999988643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=2.5e-15  Score=103.17  Aligned_cols=131  Identities=18%  Similarity=0.164  Sum_probs=64.0

Q ss_pred             CCCCCCcEEEeecCcceeecCccccCCC-CccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCc
Q 037027           44 GNLSSLQSLNLSFNRLSGSIPSATFITH-TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL  122 (205)
Q Consensus        44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  122 (205)
                      ..+.+|+.|++++|.+.. .+. +..+. +|++|++++|.++..  ..+..+++|++|++++|.+. .++...+..+++|
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L   90 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   90 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence            345556666666665552 222 22222 556666655555432  34445555555555555554 3443333445555


Q ss_pred             ceeeecccccccCCCC--CcCCCCcceEEEeecceeecccCc----cccccCCceEEEeeccccc
Q 037027          123 EYISLSQNMFHGGIPS--ALSKCTYLQILGLSFNDFSGAIPK----EIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       123 ~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~l~  181 (205)
                      +.|++++|.+.. .+.  .+..+++|+.|++++|.+.. .+.    .+..+++|+++++++|.+.
T Consensus        91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            555555555542 222  34445555555555555442 222    2444555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=8.4e-19  Score=140.67  Aligned_cols=102  Identities=28%  Similarity=0.409  Sum_probs=53.2

Q ss_pred             ccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEee
Q 037027           97 LQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLV  176 (205)
Q Consensus        97 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  176 (205)
                      |+.|++++|.++ .++.  +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+ +| .+..+++|++|+++
T Consensus       443 L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          443 VRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             CSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             ceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            445555555554 3333  244555555555555554 344455555555555555555543 33 44555555555555


Q ss_pred             cccccccC-chhccCCCCCcEEeccCCcC
Q 037027          177 RNRLQGEI-PRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       177 ~~~l~~~~-~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +|.+++.. |..+..+++|+.|++++|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            55555433 55555555555555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=9.2e-15  Score=120.55  Aligned_cols=152  Identities=25%  Similarity=0.375  Sum_probs=99.6

Q ss_pred             CCCcEEEeecCcceeecCccccCCCCccEE-----EecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCC
Q 037027           47 SSLQSLNLSFNRLSGSIPSATFITHTLKYV-----DLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF  121 (205)
Q Consensus        47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L-----~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  121 (205)
                      +.++.+++.++.+.. .+..+.....|..+     ++..+.+. ..+..+..+..|+.|++++|.+. .++..++ .+++
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDF  248 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCCS
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCC
Confidence            457778887777663 22222222223222     23333333 45667778899999999999998 7887774 7899


Q ss_pred             cceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027          122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD  201 (205)
Q Consensus       122 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~  201 (205)
                      |+.|++++|.++ .+|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|++++
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence            999999999998 77888999999999999999998 67888999999999999999998 7788899999999999999


Q ss_pred             CcCC
Q 037027          202 NELQ  205 (205)
Q Consensus       202 n~l~  205 (205)
                      |+|+
T Consensus       326 N~l~  329 (727)
T 4b8c_D          326 NPLE  329 (727)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            9874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=3.6e-14  Score=96.80  Aligned_cols=105  Identities=23%  Similarity=0.277  Sum_probs=63.5

Q ss_pred             ccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEee
Q 037027           73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLS  152 (205)
Q Consensus        73 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  152 (205)
                      .+.++++++.++ .+|..+  ...+++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            456666666665 344433  256666667766665 4433333566666666666666665444455666666666666


Q ss_pred             cceeecccCccccccCCceEEEeeccccc
Q 037027          153 FNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       153 ~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +|.+.+..+..+..+++|++|++++|++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            66666554555666666666666666665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=4.8e-15  Score=101.75  Aligned_cols=131  Identities=14%  Similarity=0.131  Sum_probs=74.7

Q ss_pred             ccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcc
Q 037027           67 TFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYL  146 (205)
Q Consensus        67 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L  146 (205)
                      +..+.+|+.|++.+|.++. .+......++|++|++++|.+. .+ . .+..+++|+++++++|.++...+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~-~~-~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCC-cc-c-ccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            4455666666666666652 3332222236666666666665 33 2 22556666666666666664333333566666


Q ss_pred             eEEEeecceeecccCc--cccccCCceEEEeecccccccCch----hccCCCCCcEEeccCCc
Q 037027          147 QILGLSFNDFSGAIPK--EIGNVTKLKELYLVRNRLQGEIPR----ELSNLAELELMSLFDNE  203 (205)
Q Consensus       147 ~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~l~~~~~~----~l~~~~~L~~l~l~~n~  203 (205)
                      +.|++++|.+.. .+.  .+..+++|+++++++|.+. ..+.    .+..+++|+.|++++|.
T Consensus        91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            666666666642 332  4556666666666666666 3333    35666666666666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=8.5e-14  Score=95.32  Aligned_cols=104  Identities=21%  Similarity=0.264  Sum_probs=62.5

Q ss_pred             cEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeec
Q 037027           74 KYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF  153 (205)
Q Consensus        74 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  153 (205)
                      +.++++++.+. .+|..+.  ..|++|++++|.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45666666665 4444332  56666677776665 34333335666666667766666644444456666666666666


Q ss_pred             ceeecccCccccccCCceEEEeeccccc
Q 037027          154 NDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       154 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      |.+.+..+..+..+++|++|++++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            6666444444566666666666666665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=1.6e-13  Score=103.19  Aligned_cols=181  Identities=14%  Similarity=0.113  Sum_probs=134.6

Q ss_pred             CceEEEEEecCCccc--------------------ccCCCCCCC--------CCCCcEEEeecCcceeecCccccCCCCc
Q 037027           22 SHRVTVFNVSGLNLT--------------------GTIPSQLGN--------LSSLQSLNLSFNRLSGSIPSATFITHTL   73 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~--------------------~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L   73 (205)
                      .++++.|+++++.+.                    ......|.+        +++|+.+.+.. .+......+|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            456888888888776                    223345666        88888888888 7776777788888889


Q ss_pred             cEEEecCcccccCCCccccCCCCccEEEcccccCC---cccC-----------------------cc-------------
Q 037027           74 KYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALS---GEIP-----------------------AN-------------  114 (205)
Q Consensus        74 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~-----------------------~~-------------  114 (205)
                      +.+.+..+.+....+..|..+.++..+........   ..+.                       ..             
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            99999888776566666666666665554441100   0000                       00             


Q ss_pred             --------------cccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCce-EEEeeccc
Q 037027          115 --------------ICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLK-ELYLVRNR  179 (205)
Q Consensus       115 --------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~  179 (205)
                                    +...+++|+.+++.+|.++.....+|..+++|+.+++.+| +.......|..+++|+ .+++.. .
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~  284 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S  284 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence                          0012678999999999898776788999999999999998 6657788899999999 999998 7


Q ss_pred             ccccCchhccCCCCCcEEeccCCcCC
Q 037027          180 LQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       180 l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      ++...+.+|.+|++|+.+++.+|.++
T Consensus       285 l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          285 VTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             CCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             ceEEchhhhhCCccCCEEEeCCCccC
Confidence            77677899999999999999888763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=9.9e-17  Score=112.26  Aligned_cols=127  Identities=20%  Similarity=0.218  Sum_probs=58.5

Q ss_pred             cccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCc
Q 037027           66 ATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY  145 (205)
Q Consensus        66 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  145 (205)
                      .+..+++|++|++.+|.+.. .+ .+..+++|++|++++|.+. .++... ..+++|+.|++++|.+++ ++ .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            34444445555554444442 22 3444445555555555444 333322 333445555555555542 12 3444455


Q ss_pred             ceEEEeecceeecccC-ccccccCCceEEEeecccccccCch----------hccCCCCCcEEe
Q 037027          146 LQILGLSFNDFSGAIP-KEIGNVTKLKELYLVRNRLQGEIPR----------ELSNLAELELMS  198 (205)
Q Consensus       146 L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~~~----------~l~~~~~L~~l~  198 (205)
                      |+.|++++|.+.+..+ ..+..+++|+++++++|.+.+.+|.          .+..+++|+.||
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            5555555555442211 2344455555555555555433222          245555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.45  E-value=3.9e-13  Score=107.94  Aligned_cols=122  Identities=22%  Similarity=0.228  Sum_probs=105.5

Q ss_pred             CccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEe
Q 037027           72 TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGL  151 (205)
Q Consensus        72 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l  151 (205)
                      .|+.|++++|.++. +|. +..+.+|++|++++|.+. .++..+ ..+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh-hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            58899999999984 565 888999999999999998 888766 789999999999999985 55 8899999999999


Q ss_pred             ecceeeccc-CccccccCCceEEEeecccccccCc---hhccCCCCCcEEec
Q 037027          152 SFNDFSGAI-PKEIGNVTKLKELYLVRNRLQGEIP---RELSNLAELELMSL  199 (205)
Q Consensus       152 ~~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~~~~---~~l~~~~~L~~l~l  199 (205)
                      ++|.+.+.. |..+..+++|++|++++|.+++..+   ..+..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999998776 8899999999999999999986543   33446899998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=1.8e-16  Score=110.92  Aligned_cols=150  Identities=22%  Similarity=0.257  Sum_probs=118.4

Q ss_pred             eEEEEEecCCcccccCCC------CCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCc
Q 037027           24 RVTVFNVSGLNLTGTIPS------QLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL   97 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L   97 (205)
                      .++.++++++.+.+..|.      .+..+++|+.|++++|.+.. .+ .+..+++|++|++.+|.+. .++..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            445555666666555554      77889999999999999985 45 7888999999999999998 567666667899


Q ss_pred             cEEEcccccCCcccCcccccCCCCcceeeecccccccCCC-CCcCCCCcceEEEeecceeecccCc----------cccc
Q 037027           98 QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP-SALSKCTYLQILGLSFNDFSGAIPK----------EIGN  166 (205)
Q Consensus        98 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~----------~~~~  166 (205)
                      ++|++++|.+. .++ .+ ..+++|+.+++++|.+++..+ ..+..+++|+.|++++|.+.+..|.          .+..
T Consensus        96 ~~L~L~~N~l~-~l~-~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A           96 EELWISYNQIA-SLS-GI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             SEEEEEEEECC-CHH-HH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CEEECcCCcCC-cCC-cc-ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            99999999997 454 33 678899999999999975322 4678899999999999998655443          3677


Q ss_pred             cCCceEEEeeccccc
Q 037027          167 VTKLKELYLVRNRLQ  181 (205)
Q Consensus       167 ~~~L~~l~l~~~~l~  181 (205)
                      +++|+.++  ++.++
T Consensus       173 l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          173 LPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSSCSEEC--CGGGT
T ss_pred             CCCcEEEC--CcccC
Confidence            89999886  66665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=2.2e-12  Score=87.89  Aligned_cols=107  Identities=24%  Similarity=0.276  Sum_probs=90.6

Q ss_pred             CCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeee
Q 037027           48 SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISL  127 (205)
Q Consensus        48 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l  127 (205)
                      ..+.++++++.+.. ++..+  .+++++|++++|.++...+..+..+.+|++|++++|.+. .++...+..+++|+.|++
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence            35788999998873 45443  378999999999999777888889999999999999998 677776688999999999


Q ss_pred             cccccccCCCCCcCCCCcceEEEeecceeec
Q 037027          128 SQNMFHGGIPSALSKCTYLQILGLSFNDFSG  158 (205)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  158 (205)
                      ++|.++...+..+..+++|+.|++++|++..
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            9999987666678899999999999998763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.39  E-value=4.3e-15  Score=113.47  Aligned_cols=157  Identities=24%  Similarity=0.227  Sum_probs=70.5

Q ss_pred             CCcEEEeecCcceeecCccc----c-CCCCccEEEecCcccccCCCcccc-CCCCccEEEcccccCCcccCcccc----c
Q 037027           48 SLQSLNLSFNRLSGSIPSAT----F-ITHTLKYVDLRGNQLSGAFPSFIF-NKSSLQDLDLSYNALSGEIPANIC----S  117 (205)
Q Consensus        48 ~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~----~  117 (205)
                      .++.|++++|.+.......+    . ...+|++|++++|.++......+. .+.+|++|++++|.+.+.....+.    .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            45555555555542211111    1 124555556555554321111111 233555556665555422111111    1


Q ss_pred             CCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeeccc----CccccccCCceEEEeeccccccc----Cc
Q 037027          118 NLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAI----PKEIGNVTKLKELYLVRNRLQGE----IP  185 (205)
Q Consensus       118 ~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~l~~~----~~  185 (205)
                      ..+.|++|++++|.+++.    ++..+..+++|++|++++|.+.+..    ...+...+.|++|++++|.+++.    ++
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            234555666665555431    2222344555666666665554321    22333445566666666655532    22


Q ss_pred             hhccCCCCCcEEeccCCcC
Q 037027          186 RELSNLAELELMSLFDNEL  204 (205)
Q Consensus       186 ~~l~~~~~L~~l~l~~n~l  204 (205)
                      ..+...++|++|++++|+|
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSC
T ss_pred             HHHHhCCCCCEEeccCCCC
Confidence            3333445566666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.38  E-value=9.5e-12  Score=95.92  Aligned_cols=172  Identities=15%  Similarity=0.116  Sum_probs=85.6

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee----------------------cCccccCCCCccEEEecCc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS----------------------IPSATFITHTLKYVDLRGN   81 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------------~~~~~~~l~~L~~L~l~~~   81 (205)
                      .++.+.+.. .+.......|.++.+|+.+++.++.+...                      ...+|..+++|+.+.+..+
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC
Confidence            355555543 33333444555566666666655544433                      3344444444555444432


Q ss_pred             ccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccc-----cCCCCCcCCCCcceEEEeeccee
Q 037027           82 QLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH-----GGIPSALSKCTYLQILGLSFNDF  156 (205)
Q Consensus        82 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~~~~  156 (205)
                       ++......|.. ..|+.+.+.. .+. .+....|.++++|+.+.+..+.+.     .....+|..|++|+.+.+..+ +
T Consensus       237 -l~~I~~~aF~~-~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i  311 (401)
T 4fdw_A          237 -VSTIGQEAFRE-SGITTVKLPN-GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I  311 (401)
T ss_dssp             -CCEECTTTTTT-CCCSEEEEET-TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C
T ss_pred             -ccCcccccccc-CCccEEEeCC-Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e
Confidence             11122222222 3444444422 232 344444455666666666555432     133345666666666666533 3


Q ss_pred             ecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027          157 SGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       157 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                      .......+..+++|+.+.+..+ ++.....+|.++ +|+.+++.+|.
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred             EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence            3344555666666666666433 444445666666 67777666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=4.4e-12  Score=86.76  Aligned_cols=105  Identities=23%  Similarity=0.256  Sum_probs=89.9

Q ss_pred             CcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeec
Q 037027           49 LQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS  128 (205)
Q Consensus        49 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~  128 (205)
                      -+.++++++.+. .++..+  .+.|++|++++|.+....+..+..+.+|++|++++|.+. .++...+..+++|+.|+++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence            467899998887 455544  378999999999999777888899999999999999998 6777766889999999999


Q ss_pred             ccccccCCCCCcCCCCcceEEEeecceee
Q 037027          129 QNMFHGGIPSALSKCTYLQILGLSFNDFS  157 (205)
Q Consensus       129 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  157 (205)
                      +|.++...+..+..+++|+.|++++|++.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            99998665566899999999999999886

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.32  E-value=4.6e-11  Score=92.09  Aligned_cols=172  Identities=15%  Similarity=0.109  Sum_probs=109.9

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS  103 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  103 (205)
                      +++.+.+..+ +.......|.+ .+|+.+.+.. .+......+|..+.+|+.+.+..+.++......|. ...|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            6778888654 65556667777 4799999986 66667788999999999999998877644444443 4667777776


Q ss_pred             cccCCcccCcccccCCCCcceeeeccc---------------------ccccCCCCCcCCCCcceEEEeecceee-----
Q 037027          104 YNALSGEIPANICSNLPFLEYISLSQN---------------------MFHGGIPSALSKCTYLQILGLSFNDFS-----  157 (205)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~---------------------~~~~~~~~~~~~~~~L~~l~l~~~~~~-----  157 (205)
                      .+ +. .+....|.++++|+.+.+..+                     .++.....+|..|++|+.+.+.++...     
T Consensus       212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~  289 (401)
T 4fdw_A          212 VT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA  289 (401)
T ss_dssp             TT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred             Cc-hh-eehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence            43 43 455555555666666655442                     222233455666666666666665442     


Q ss_pred             cccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027          158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       158 ~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      ......+..+++|+.+.+. +.++.....+|.+|.+|+.+.+..+
T Consensus       290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence            2444556666666666666 3355455566777777777776443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=6.5e-15  Score=112.47  Aligned_cols=181  Identities=18%  Similarity=0.174  Sum_probs=123.6

Q ss_pred             ceEEEEEecCCcccccCCCCC----C-CCCCCcEEEeecCcceeecCccc-cCCCCccEEEecCcccccCCCccc-----
Q 037027           23 HRVTVFNVSGLNLTGTIPSQL----G-NLSSLQSLNLSFNRLSGSIPSAT-FITHTLKYVDLRGNQLSGAFPSFI-----   91 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l-----   91 (205)
                      +.++.|++++|.++......+    . ..++|+.|++++|.+.+.....+ ..+.+|+.|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            468899999998864322222    2 23689999999999874433322 345689999999998874333333     


Q ss_pred             cCCCCccEEEcccccCCcccCccc---ccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeecccC---
Q 037027           92 FNKSSLQDLDLSYNALSGEIPANI---CSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAIP---  161 (205)
Q Consensus        92 ~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~---  161 (205)
                      ...+.|++|++++|.+.+.....+   ....+.|++|++++|.+.+.    +...+...++|+.|++++|.+.+...   
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            246789999999998863222211   14578899999999998752    24556777899999999999865332   


Q ss_pred             -ccccccCCceEEEeecccccccCchhccCCC-----CCcEEe--ccCCc
Q 037027          162 -KEIGNVTKLKELYLVRNRLQGEIPRELSNLA-----ELELMS--LFDNE  203 (205)
Q Consensus       162 -~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~-----~L~~l~--l~~n~  203 (205)
                       ..+...++|++|++++|.+++.....+....     .++.+.  +..+.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~  281 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA  281 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence             3344568999999999999876555554332     166665  55544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.28  E-value=3.3e-13  Score=108.92  Aligned_cols=83  Identities=10%  Similarity=0.134  Sum_probs=36.4

Q ss_pred             EEEEEecCCc-ccc-cCCCCCCCCCCCcEEEeecCcceee----cCccccCCCCccEEEecCccccc----CCCccccCC
Q 037027           25 VTVFNVSGLN-LTG-TIPSQLGNLSSLQSLNLSFNRLSGS----IPSATFITHTLKYVDLRGNQLSG----AFPSFIFNK   94 (205)
Q Consensus        25 l~~l~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l   94 (205)
                      ++.|++.+|. +.. ..+..+.++++|+.|++.+|.+.+.    ....+..+++|++|++..+.++.    ..+..+..+
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            6666666654 110 0111112455666666666655422    11122344555555555554431    111222334


Q ss_pred             CCccEEEcccccC
Q 037027           95 SSLQDLDLSYNAL  107 (205)
Q Consensus        95 ~~L~~L~l~~~~~  107 (205)
                      ++|++|++.++.+
T Consensus       220 ~~L~~L~L~~~~~  232 (592)
T 3ogk_B          220 RSLVSVKVGDFEI  232 (592)
T ss_dssp             TTCCEEECSSCBG
T ss_pred             CCCcEEeccCccH
Confidence            4555555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=1.5e-11  Score=93.06  Aligned_cols=103  Identities=20%  Similarity=0.224  Sum_probs=75.7

Q ss_pred             EEEecCc-ccccCCCccccCCCCccEEEccc-ccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEee
Q 037027           75 YVDLRGN-QLSGAFPSFIFNKSSLQDLDLSY-NALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLS  152 (205)
Q Consensus        75 ~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  152 (205)
                      .++..++ .++ .+|. +..+.+|++|++++ |.+. .++...+..+++|+.|++++|.+++..+..|..+++|+.|+|+
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4566666 666 4666 77778888888885 8886 5665555778888888888888877667777888888888888


Q ss_pred             cceeecccCccccccCCceEEEeeccccc
Q 037027          153 FNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       153 ~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +|.+.+..+..+..++ |++|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            8888755555554444 888888888776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.26  E-value=3.2e-13  Score=108.99  Aligned_cols=108  Identities=18%  Similarity=0.216  Sum_probs=56.1

Q ss_pred             ceEEEEEecCCcccccCCCCCC-CCCCCcEEEeecC-cceee-cCccccCCCCccEEEecCcccccCCCccc----cCCC
Q 037027           23 HRVTVFNVSGLNLTGTIPSQLG-NLSSLQSLNLSFN-RLSGS-IPSATFITHTLKYVDLRGNQLSGAFPSFI----FNKS   95 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~   95 (205)
                      ++++.|+++++.++...+..+. .+++|+.|++.+| .+.+. .+..+..+++|++|++.+|.++...+..+    ..++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            3566667766665543333333 4566777777766 33321 22223356677777777776554332222    2455


Q ss_pred             CccEEEccccc--CCcccCcccccCCCCcceeeeccc
Q 037027           96 SLQDLDLSYNA--LSGEIPANICSNLPFLEYISLSQN  130 (205)
Q Consensus        96 ~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~l~l~~~  130 (205)
                      +|++|++.++.  +.......+...+++|+.|++.+|
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            67777777664  211111111123466666666655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.24  E-value=9.6e-13  Score=106.18  Aligned_cols=81  Identities=11%  Similarity=0.183  Sum_probs=43.8

Q ss_pred             CCceEEEEEecCCccccc----CCCCCCCCCCCcEEEeecCcce----eecCccccCCCCccEEEecCcccccCCCcccc
Q 037027           21 HSHRVTVFNVSGLNLTGT----IPSQLGNLSSLQSLNLSFNRLS----GSIPSATFITHTLKYVDLRGNQLSGAFPSFIF   92 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~   92 (205)
                      ..++++.|++++|.+.+.    ++..+..+++|+.|+++++.+.    ...+..+..+++|++|++.+|.+.. .+..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            345777888888776533    1222345667777777776664    1223334456677777777665542 223333


Q ss_pred             CCCCccEEEc
Q 037027           93 NKSSLQDLDL  102 (205)
Q Consensus        93 ~l~~L~~L~l  102 (205)
                      .+++|+++++
T Consensus       241 ~~~~L~~L~l  250 (592)
T 3ogk_B          241 AAANLEEFCG  250 (592)
T ss_dssp             HCTTCCEEEE
T ss_pred             hhhHHHhhcc
Confidence            3344444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.22  E-value=6.8e-14  Score=112.91  Aligned_cols=181  Identities=13%  Similarity=0.088  Sum_probs=98.2

Q ss_pred             CceEEEEEecCCcccccC-CCCCCCCCCCcEEEeecCcceeecCc-cccCCCCccEEEecCc---------ccccCCCcc
Q 037027           22 SHRVTVFNVSGLNLTGTI-PSQLGNLSSLQSLNLSFNRLSGSIPS-ATFITHTLKYVDLRGN---------QLSGAFPSF   90 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~---------~~~~~~~~~   90 (205)
                      .++++.|++++|.+.... ...+..+++|+.|++.++ +.+.... ....+++|++|++..+         .++......
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~  366 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS  366 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence            457889999998865332 223457788888888877 3322111 1223566777766331         111100001


Q ss_pred             c-cCCCCccEEEcccccCCcccCccc-----------------------------------ccCCCCcceeeeccccccc
Q 037027           91 I-FNKSSLQDLDLSYNALSGEIPANI-----------------------------------CSNLPFLEYISLSQNMFHG  134 (205)
Q Consensus        91 l-~~l~~L~~L~l~~~~~~~~~~~~~-----------------------------------~~~~~~L~~l~l~~~~~~~  134 (205)
                      + ..+++|++|.+..+.+++.....+                                   +..+++|+.|++++ .+++
T Consensus       367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~  445 (594)
T 2p1m_B          367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD  445 (594)
T ss_dssp             HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred             HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence            1 113444444444333332111111                                   23344555555544 3332


Q ss_pred             CCCCCcCC-CCcceEEEeecceeecccCccc-cccCCceEEEeecccccccCch-hccCCCCCcEEeccCCcC
Q 037027          135 GIPSALSK-CTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPR-ELSNLAELELMSLFDNEL  204 (205)
Q Consensus       135 ~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~~~~~-~l~~~~~L~~l~l~~n~l  204 (205)
                      .....+.. +++|+.|++++|.+.+.....+ ..+++|++|++++|.+++.... ....+++|+.|++++|++
T Consensus       446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            22222222 6678888888887754444333 5578888888888888654433 344578888888888875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=1.8e-10  Score=87.07  Aligned_cols=101  Identities=21%  Similarity=0.202  Sum_probs=66.5

Q ss_pred             EecCC-cccccCCCCCCCCCCCcEEEeec-CcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccccc
Q 037027           29 NVSGL-NLTGTIPSQLGNLSSLQSLNLSF-NRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA  106 (205)
Q Consensus        29 ~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  106 (205)
                      +.+++ .+. .+|. +..+.+|+.|++++ |.+....+..|..+++|+.|++++|.++...+..|..+.+|++|++++|.
T Consensus        14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            34444 444 3555 67777777777774 77765555667777777777777777776666666777777777777777


Q ss_pred             CCcccCcccccCCCCcceeeecccccc
Q 037027          107 LSGEIPANICSNLPFLEYISLSQNMFH  133 (205)
Q Consensus       107 ~~~~~~~~~~~~~~~L~~l~l~~~~~~  133 (205)
                      +. .++...+..++ |+.|++.+|.+.
T Consensus        92 l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           92 LE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            76 55555544444 777777777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.01  E-value=3.7e-10  Score=85.78  Aligned_cols=160  Identities=14%  Similarity=0.181  Sum_probs=98.8

Q ss_pred             CCCCCCCcEEEeecCcce---------eecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCc
Q 037027           43 LGNLSSLQSLNLSFNRLS---------GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPA  113 (205)
Q Consensus        43 ~~~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  113 (205)
                      +..+++|+.|.+......         ......+..+++|+.|.+.++.-. ..+. + .+++|++|.+..+.+......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            345678888888654321         012234456788999999877311 2222 3 377899999888877533323


Q ss_pred             ccc-cCCCCcceeeeccc--cccc-----CCCCCc--CCCCcceEEEeecceeecccCccc---cccCCceEEEeecccc
Q 037027          114 NIC-SNLPFLEYISLSQN--MFHG-----GIPSAL--SKCTYLQILGLSFNDFSGAIPKEI---GNVTKLKELYLVRNRL  180 (205)
Q Consensus       114 ~~~-~~~~~L~~l~l~~~--~~~~-----~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~l  180 (205)
                      .+. ..+++|+.|+++.+  ...+     .+...+  ..+++|+.|++.+|.+.+.....+   ..++.|++|+++.|.+
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            332 25788888887532  1111     111122  246889999998887754332222   2467899999998888


Q ss_pred             cccCc----hhccCCCCCcEEeccCCcCC
Q 037027          181 QGEIP----RELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       181 ~~~~~----~~l~~~~~L~~l~l~~n~l~  205 (205)
                      .+..+    ..+..+++|+.|++++|.++
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            86433    33345788999999988764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.84  E-value=5.7e-10  Score=84.75  Aligned_cols=176  Identities=14%  Similarity=0.158  Sum_probs=110.2

Q ss_pred             CceEEEEEecCCccc---------ccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCcccc
Q 037027           22 SHRVTVFNVSGLNLT---------GTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF   92 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~   92 (205)
                      .++++.|.+.+....         +.+...+..+++|+.|.+.++... ..+. + ..++|+.|.+..+.+.......+.
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence            357888888654321         112233456789999999887322 1222 3 378999999998876533223333


Q ss_pred             --CCCCccEEEcccc--cCCc-----ccCcccc-cCCCCcceeeecccccccCCCCCc---CCCCcceEEEeecceeecc
Q 037027           93 --NKSSLQDLDLSYN--ALSG-----EIPANIC-SNLPFLEYISLSQNMFHGGIPSAL---SKCTYLQILGLSFNDFSGA  159 (205)
Q Consensus        93 --~l~~L~~L~l~~~--~~~~-----~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~~~  159 (205)
                        .+++|++|+++.+  ...+     .+...+. ..+++|+.|++.+|.+.+..+..+   ..+++|+.|+++.|.+.+.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence              6889999998632  1111     1111121 247899999999998764222222   2468999999999988654


Q ss_pred             c----CccccccCCceEEEeecccccccCchhccC-CCCCcEEeccCC
Q 037027          160 I----PKEIGNVTKLKELYLVRNRLQGEIPRELSN-LAELELMSLFDN  202 (205)
Q Consensus       160 ~----~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~-~~~L~~l~l~~n  202 (205)
                      .    +..+..+++|+.|+++.|.+++...+.+.. +  -..++++.+
T Consensus       295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~  340 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS  340 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred             HHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence            3    233356799999999999998655544443 2  234566554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.72  E-value=3.2e-09  Score=71.97  Aligned_cols=87  Identities=15%  Similarity=0.152  Sum_probs=55.1

Q ss_pred             CCccEEEcccccCCcccCcccccCCCCcceeeecccc-cccCCCCCcCCC----CcceEEEeecce-eecccCccccccC
Q 037027           95 SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM-FHGGIPSALSKC----TYLQILGLSFND-FSGAIPKEIGNVT  168 (205)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~~~-~~~~~~~~~~~~~  168 (205)
                      ..|++|+++++.+++..-..+ ..+++|+.|++++|. +++..-..+..+    ++|+.|++++|. +++..-..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            467788888877764444444 567777888887774 554333334442    367777777774 5554445566677


Q ss_pred             CceEEEeeccc-ccc
Q 037027          169 KLKELYLVRNR-LQG  182 (205)
Q Consensus       169 ~L~~l~l~~~~-l~~  182 (205)
                      +|++|++++|. +++
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            77777777773 553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=3.8e-09  Score=72.79  Aligned_cols=117  Identities=12%  Similarity=0.099  Sum_probs=54.6

Q ss_pred             ccccCCCCccEEEecCc-cccc----CCCccccCCCCccEEEcccccCCcccCccc---ccCCCCcceeeecccccccC-
Q 037027           65 SATFITHTLKYVDLRGN-QLSG----AFPSFIFNKSSLQDLDLSYNALSGEIPANI---CSNLPFLEYISLSQNMFHGG-  135 (205)
Q Consensus        65 ~~~~~l~~L~~L~l~~~-~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~-  135 (205)
                      ..+...+.|++|++.+| .+..    .+...+...+.|++|++++|.+.+.....+   ....+.|++|++++|.+.+. 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34455666777777766 5542    122333445566666666666643221111   12234455555555555431 


Q ss_pred             ---CCCCcCCCCcceEEEe--ecceeeccc----CccccccCCceEEEeeccccc
Q 037027          136 ---IPSALSKCTYLQILGL--SFNDFSGAI----PKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       136 ---~~~~~~~~~~L~~l~l--~~~~~~~~~----~~~~~~~~~L~~l~l~~~~l~  181 (205)
                         +...+...++|+.|++  .+|.+.+..    ...+...+.|++|++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               2233444444555555  444443221    122223344555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.59  E-value=2e-06  Score=66.12  Aligned_cols=145  Identities=16%  Similarity=0.163  Sum_probs=73.3

Q ss_pred             CCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCc
Q 037027           43 LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL  122 (205)
Q Consensus        43 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  122 (205)
                      |..+..++.+.+..+... ....+|..+..++.+......+.   ...+..+.+|+.+.+..+ +. .+....|.++.+|
T Consensus       249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L  322 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSL  322 (394)
T ss_dssp             TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTC
T ss_pred             ccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCC
Confidence            344444444444433222 33344444445554444433221   223344556666665543 33 4444445566666


Q ss_pred             ceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEE
Q 037027          123 EYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELM  197 (205)
Q Consensus       123 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l  197 (205)
                      +.+.+..+ ++.....+|..|++|+.+.+..+ +......++..|++|+.+++..+ ++ ....+|.++++|+.+
T Consensus       323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            66666433 43334456666666666666555 33344556666666666666543 22 223456666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.57  E-value=7.2e-07  Score=68.54  Aligned_cols=132  Identities=16%  Similarity=0.146  Sum_probs=91.8

Q ss_pred             cCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCC
Q 037027           63 IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSK  142 (205)
Q Consensus        63 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  142 (205)
                      ...++..+..++.+.+..+... .....+..+..++.+......    ++...+..+..|+.+.+..+ ++.....+|..
T Consensus       245 ~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~  318 (394)
T 4fs7_A          245 GKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFES  318 (394)
T ss_dssp             CSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTT
T ss_pred             ccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcC
Confidence            3445556666666666554332 344445556666666554443    33344567788888888654 55455678999


Q ss_pred             CCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027          143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       143 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      +++|+.+++..+ +......++..|++|+.+.+..+ ++.....+|.+|++|+.+++..+
T Consensus       319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            999999999765 44466788899999999999876 66566789999999999998654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.48  E-value=4.3e-06  Score=63.77  Aligned_cols=147  Identities=12%  Similarity=0.145  Sum_probs=94.5

Q ss_pred             CCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCC
Q 037027           41 SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP  120 (205)
Q Consensus        41 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  120 (205)
                      ..+..+.+++.+.+..+ +......++..+..|+.+.+..+ ++......+..+..|+.+.+..+ +. .+....|.++.
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~  286 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCS  286 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccc
Confidence            34445566777666543 33345566777777888877664 33344555666777777777544 43 45555567778


Q ss_pred             CcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCC
Q 037027          121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAE  193 (205)
Q Consensus       121 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~  193 (205)
                      +|+.+.+..+.++.....+|..|.+|+.+.+..+ +......++..|++|+.+.+..+ ++.....+|.+++.
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            8888888777666555667888888888887655 33355667777888888777544 44344566666643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.48  E-value=7e-06  Score=63.01  Aligned_cols=106  Identities=13%  Similarity=0.180  Sum_probs=67.2

Q ss_pred             CCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceE
Q 037027           93 NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKE  172 (205)
Q Consensus        93 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  172 (205)
                      .+..|+.+.+..+-.  .+....|..+..|+.+.+.. .++.....+|..|.+|+.+.+..+ +......+|..|.+|+.
T Consensus       263 ~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          263 SCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             ecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            344555555544322  23333445566666666643 344344567778888888888765 33355677788888888


Q ss_pred             EEeecccccccCchhccCCCCCcEEeccCCc
Q 037027          173 LYLVRNRLQGEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       173 l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                      +.+..+ ++.....+|.+|.+|+.+++.++.
T Consensus       339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             EEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            888644 555556788888888888887653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=7e-08  Score=65.38  Aligned_cols=82  Identities=12%  Similarity=-0.003  Sum_probs=38.0

Q ss_pred             CccEEEecCcccccCCCccccCCCCccEEEccccc-CCcccCcccccCC----CCcceeeecccc-cccCCCCCcCCCCc
Q 037027           72 TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA-LSGEIPANICSNL----PFLEYISLSQNM-FHGGIPSALSKCTY  145 (205)
Q Consensus        72 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~----~~L~~l~l~~~~-~~~~~~~~~~~~~~  145 (205)
                      .|+.|++++|.+++..-..+..+++|++|++++|. +++..-..+ ..+    +.|+.|++++|. +++.....+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            45555555555544333334445555555555552 432222222 221    245555555553 44332233444555


Q ss_pred             ceEEEeecc
Q 037027          146 LQILGLSFN  154 (205)
Q Consensus       146 L~~l~l~~~  154 (205)
                      |+.|++++|
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=1.4e-08  Score=69.96  Aligned_cols=114  Identities=16%  Similarity=0.166  Sum_probs=63.8

Q ss_pred             cccCCCCccEEEcccc-cCCcccC----cccccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeecc-
Q 037027           90 FIFNKSSLQDLDLSYN-ALSGEIP----ANICSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGA-  159 (205)
Q Consensus        90 ~l~~l~~L~~L~l~~~-~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~-  159 (205)
                      .+...+.|++|++++| .+.+...    ..+ ...+.|++|++++|.+.+.    +.+.+...++|+.|++++|.+.+. 
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            3445566777777776 6643211    122 3345677777777766531    223344455677777777766532 


Q ss_pred             ---cCccccccCCceEEEe--eccccccc----CchhccCCCCCcEEeccCCcC
Q 037027          160 ---IPKEIGNVTKLKELYL--VRNRLQGE----IPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       160 ---~~~~~~~~~~L~~l~l--~~~~l~~~----~~~~l~~~~~L~~l~l~~n~l  204 (205)
                         +...+...+.|++|++  ++|.+.+.    +.+.+...++|++|++++|.+
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence               2334445566777777  66666643    234444556677777776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.41  E-value=4.3e-06  Score=64.23  Aligned_cols=135  Identities=17%  Similarity=0.202  Sum_probs=96.6

Q ss_pred             ecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcC
Q 037027           62 SIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALS  141 (205)
Q Consensus        62 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~  141 (205)
                      ....+|..+..|+.+.+...... .....+..+..|+.+.+.. .+. .+....|.++.+|+.+.+..+ ++.....+|.
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  331 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFA  331 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence            34567888889999998765443 5556677888999999864 454 677777789999999999765 5545567899


Q ss_pred             CCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          142 KCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       142 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      .|.+|+.+.+..+ +......+|..|++|+.+++.++...   ...+..+..|+.+.+..+.+
T Consensus       332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            9999999999765 45466788999999999999988654   24667788888888876643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.39  E-value=7.1e-06  Score=62.58  Aligned_cols=130  Identities=14%  Similarity=0.125  Sum_probs=91.9

Q ss_pred             ccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcc
Q 037027           67 TFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYL  146 (205)
Q Consensus        67 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L  146 (205)
                      +.....++.+.+...- .......+..+..|+.+.+..+ +. .+....+..+..++.+.+..+ +......++..+.+|
T Consensus       213 f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          213 FSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             cccccccceeeeccce-eEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3444556666664432 2233445556778888887765 43 555556677788888888654 443455678899999


Q ss_pred             eEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027          147 QILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD  201 (205)
Q Consensus       147 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~  201 (205)
                      +.+.+.++.+.......+..+.+|+.+.+..+ ++.....+|.+|.+|+.+.+-.
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            99999888776677788899999999998754 6656678899999999888754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=6.5e-07  Score=64.94  Aligned_cols=79  Identities=29%  Similarity=0.395  Sum_probs=49.2

Q ss_pred             CCCCcceeeeccccccc--CCCCCcCCCCcceEEEeecceeecccCccccccC--CceEEEeecccccccCc-------h
Q 037027          118 NLPFLEYISLSQNMFHG--GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVT--KLKELYLVRNRLQGEIP-------R  186 (205)
Q Consensus       118 ~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~l~~~~~-------~  186 (205)
                      .++.|+.|++++|.+++  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++.+|++.+..+       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            45667777777777764  2334455667777777777776543  2233333  77778888877765333       3


Q ss_pred             hccCCCCCcEEe
Q 037027          187 ELSNLAELELMS  198 (205)
Q Consensus       187 ~l~~~~~L~~l~  198 (205)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            456777777766

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.92  E-value=7.5e-06  Score=59.36  Aligned_cols=63  Identities=32%  Similarity=0.326  Sum_probs=50.5

Q ss_pred             CCCCcceEEEeecceeec--ccCccccccCCceEEEeecccccccCchhccCCC--CCcEEeccCCcCC
Q 037027          141 SKCTYLQILGLSFNDFSG--AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLA--ELELMSLFDNELQ  205 (205)
Q Consensus       141 ~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~--~L~~l~l~~n~l~  205 (205)
                      ..+++|+.|++++|.+.+  .++..+..+++|+.|+|++|.+++.  ..+..++  +|++|++.+|++.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence            456889999999999976  3445667899999999999999854  3344444  9999999999873

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.30  E-value=1.7e-05  Score=54.69  Aligned_cols=86  Identities=13%  Similarity=0.133  Sum_probs=42.6

Q ss_pred             cCCCCccEEEecCc-cccc----CCCccccCCCCccEEEcccccCCcccCcccc---cCCCCcceeeecccccccC----
Q 037027           68 FITHTLKYVDLRGN-QLSG----AFPSFIFNKSSLQDLDLSYNALSGEIPANIC---SNLPFLEYISLSQNMFHGG----  135 (205)
Q Consensus        68 ~~l~~L~~L~l~~~-~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~~~----  135 (205)
                      ..-+.|+.|++.++ .+.+    .+.+.+..-..|+.|++.+|.+.+.....+.   ..-..|+.|+++.|.|.+.    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34456666666654 4432    2233344455666666666666532222211   2234566666666655431    


Q ss_pred             CCCCcCCCCcceEEEeec
Q 037027          136 IPSALSKCTYLQILGLSF  153 (205)
Q Consensus       136 ~~~~~~~~~~L~~l~l~~  153 (205)
                      +.+++..-+.|+.|++.+
T Consensus       118 la~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHTTTTCCCSEEECCC
T ss_pred             HHHHHhhCCceeEEECCC
Confidence            223344445566666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.23  E-value=0.00053  Score=44.03  Aligned_cols=56  Identities=16%  Similarity=0.191  Sum_probs=34.8

Q ss_pred             eeeecccccc-cCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          124 YISLSQNMFH-GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       124 ~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      .++.++..++ ..+|..+  ..+++.|+|++|.+....+..+..+++|++|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555565554 1234322  235777777777776555666667777777777777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.99  E-value=0.00017  Score=49.76  Aligned_cols=112  Identities=12%  Similarity=0.115  Sum_probs=79.7

Q ss_pred             ccCCCCccEEEcccc-cCCccc----CcccccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeecccC
Q 037027           91 IFNKSSLQDLDLSYN-ALSGEI----PANICSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAIP  161 (205)
Q Consensus        91 l~~l~~L~~L~l~~~-~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~  161 (205)
                      +..-+.|++|+++++ .+.+..    ...+ ..-..|+.|++++|.+.+.    +.+.+..-+.|+.|+|++|.+.+...
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            345678999999985 775332    2233 4557899999999999753    33445667899999999999865433


Q ss_pred             ----ccccccCCceEEEeecc---cccc----cCchhccCCCCCcEEeccCCc
Q 037027          162 ----KEIGNVTKLKELYLVRN---RLQG----EIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       162 ----~~~~~~~~L~~l~l~~~---~l~~----~~~~~l~~~~~L~~l~l~~n~  203 (205)
                          ..+...+.|++|+|.++   .+.+    .+.+++..-+.|+.|+++.|.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence                34455677999999865   4443    244666677889999998764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.14  E-value=0.01  Score=37.88  Aligned_cols=36  Identities=28%  Similarity=0.428  Sum_probs=16.9

Q ss_pred             CccEEEcccccCCcccCcccccCCCCcceeeeccccc
Q 037027           96 SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF  132 (205)
Q Consensus        96 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  132 (205)
                      .+++|++++|.++ .++...|..+++|+.|++.+|.+
T Consensus        32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence            3445555555554 44444444444444444444433

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.51  E-value=4.4  Score=24.22  Aligned_cols=50  Identities=14%  Similarity=0.107  Sum_probs=33.4

Q ss_pred             CCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcc
Q 037027           32 GLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ   82 (205)
Q Consensus        32 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   82 (205)
                      |..++.+-...|.++..|+.+.+..+ ++.....+|.++.+|+.+.+....
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence            33445455566778888888887764 333566777888888888776643

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=81.52  E-value=4.2  Score=24.33  Aligned_cols=44  Identities=18%  Similarity=0.169  Sum_probs=27.2

Q ss_pred             ccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecc
Q 037027          110 EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFN  154 (205)
Q Consensus       110 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  154 (205)
                      .+....|.++..|+.+.+-.+ ++.....+|..|.+|+.+.+...
T Consensus        10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A           10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            455555566777777777554 33344566777777777776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.0 bits (170), Expect = 6e-15
 Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 15/192 (7%)

Query: 11  CNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT 70
              + +T       +   +++G  L       L +L++L  L+L+ N++S   P +    
Sbjct: 207 NQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGL-- 262

Query: 71  HTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
             L  + L  NQ+S   P       +  +L+ +          +  SNL  L Y++L  N
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNLELNENQL-----EDISPISNLKNLTYLTLYFN 317

Query: 131 MFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSN 190
                 P  +S  T LQ L  + N  S      + N+T +  L    N++    P  L+N
Sbjct: 318 NISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 371

Query: 191 LAELELMSLFDN 202
           L  +  + L D 
Sbjct: 372 LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.8 bits (159), Expect = 2e-13
 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 31/182 (17%)

Query: 44  GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103
             L++L+SL  + N++S   P    I   L  + L GNQL       + + ++L DLDL+
Sbjct: 194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSK--------------------C 143
            N +S   P    S L  L  + L  N      P A                        
Sbjct: 250 NNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 144 TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE 203
             L  L L FN+ S   P  + ++TKL+ L+   N++       L+NL  +  +S   N+
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 204 LQ 205
           + 
Sbjct: 363 IS 364

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 9e-10
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 3   NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS 62
             N          ++   +   +T   +   N++   P  + +L+ LQ L  + N++S  
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD- 343

Query: 63  IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA 106
           + S   +T+ + ++    NQ+S   P  + N + +  L L+  A
Sbjct: 344 VSSLANLTN-INWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.9 bits (159), Expect = 1e-13
 Identities = 56/152 (36%), Positives = 75/152 (49%), Gaps = 8/152 (5%)

Query: 3   NWNTSSPVCN--WTGVTCD--VHSHRVTVFNVSGLNLTG--TIPSQLGNLSSLQSLNLSF 56
           +W  ++  CN  W GV CD    ++RV   ++SGLNL     IPS L NL  L  L +  
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 57  N-RLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANI 115
              L G IP A      L Y+ +    +SGA P F+    +L  LD SYNALSG +P +I
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 116 CSNLPFLEYISLSQNMFHGGIPSALSKCTYLQ 147
             +LP L  I+   N   G IP +    + L 
Sbjct: 146 S-SLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.1 bits (144), Expect = 1e-11
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 75  YVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG 134
            +DLR N++ G  P  +     L  L++S+N L GEIP     NL   +  + + N    
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLC 305

Query: 135 GIPSALSKCT 144
           G P  L  CT
Sbjct: 306 GSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.0 bits (141), Expect = 3e-11
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 11  CNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT 70
                +     S  +   ++    + GT+P  L  L  L SLN+SFN L G IP    + 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 71  HTLKYVDLRGNQLSGAFP 88
                     N+     P
Sbjct: 292 -RFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 3e-13
 Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 14/196 (7%)

Query: 11  CNWTGVTCDVHSHR---------VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSG 61
           C+   V C                 + ++    +T        NL +L +L L  N++S 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 62  SIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF 121
             P A      L+ + L  NQL             L+  +     +   +      N   
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMI 127

Query: 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181
           +  +  +     G    A      L  + ++  + +  IP+  G    L EL+L  N++ 
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT 184

Query: 182 GEIPRELSNLAELELM 197
                 L  L  L  +
Sbjct: 185 KVDAASLKGLNNLAKL 200

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 4/126 (3%)

Query: 73  LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
           L+ V      L    P  +        LDL  N ++  I      NL  L  + L  N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKI 67

Query: 133 HGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLA 192
               P A +    L+ L LS N       K    + +L+       +++  +   L+ + 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 193 ELELMS 198
            +EL +
Sbjct: 128 VVELGT 133

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 5e-08
 Identities = 37/232 (15%), Positives = 65/232 (28%), Gaps = 56/232 (24%)

Query: 26  TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQL-- 83
               +    ++   P     L  L+ L LS N+L             L+  +    ++  
Sbjct: 58  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK 117

Query: 84  ---------------------SGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL 122
                                SG           L  + ++   ++  IP  +  +L   
Sbjct: 118 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL--- 173

Query: 123 EYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI---------------------- 160
             + L  N       ++L     L  LGLSFN  S                         
Sbjct: 174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

Query: 161 -PKEIGNVTKLKELYLVRNRLQG------EIPRELSNLAELELMSLFDNELQ 205
            P  + +   ++ +YL  N +          P   +  A    +SLF N +Q
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 136 IPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELE 195
           +P  L       +L L  N  +     +  N+  L  L L+ N++    P   + L +LE
Sbjct: 25  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 196 LMSLFDNELQ 205
            + L  N+L+
Sbjct: 83  RLYLSKNQLK 92

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 28/181 (15%)

Query: 21  HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRG 80
              +++   ++  N+T TIP   G   SL  L+L  N+++    ++    + L  + L  
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 81  NQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL 140
           N +S      + N   L++L L+ N L         ++  +++ + L  N          
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNN---------- 252

Query: 141 SKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ-GEIP----RELSNLAELE 195
                  I  +  NDF    P           + L  N +Q  EI     R +   A ++
Sbjct: 253 ------NISAIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

Query: 196 L 196
           L
Sbjct: 305 L 305

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 9e-13
 Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 3/185 (1%)

Query: 18  CDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVD 77
           C  ++      +     L   +P  +   ++ Q + L  NR+S    ++      L  + 
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 78  LRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP 137
           L  N L+    +     + L+ LDLS NA    +       L  L  + L +       P
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 138 SALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELM 197
                   LQ L L  N           ++  L  L+L  NR+     R    L  L+ +
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 198 SLFDN 202
            L  N
Sbjct: 183 LLHQN 187

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 5e-12
 Identities = 41/203 (20%), Positives = 66/203 (32%), Gaps = 2/203 (0%)

Query: 3   NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS 62
            W  S+ +           +    +       L    P+    L  L +L+L    L   
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 63  IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL 122
            P        L+Y+ L+ N L         +  +L  L L  N +S  +P      L  L
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSL 179

Query: 123 EYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG 182
           + + L QN      P A      L  L L  N+ S    + +  +  L+ L L  N    
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 183 EIPRELSNLAELELMSLFDNELQ 205
           +  R     A L+      +E+ 
Sbjct: 240 DC-RARPLWAWLQKFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 3e-08
 Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 5/125 (4%)

Query: 34  NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
            ++         L SL  L L  NR++   P A      L  + L  N LS      +  
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 94  KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF 153
             +LQ L L+ N    +          +L+    S +     +P  L+      +  L+ 
Sbjct: 224 LRALQYLRLNDNPWVCDC--RARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAA 278

Query: 154 NDFSG 158
           ND  G
Sbjct: 279 NDLQG 283

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 3e-09
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 4/91 (4%)

Query: 96  SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG----GIPSALSKCTYLQILGL 151
            +Q LD+    LS    A +   L   + + L            I SAL     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 152 SFNDFSGAIPKEIGNVTKLKELYLVRNRLQG 182
             N+        +    +     + +  LQ 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 1e-07
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 9/95 (9%)

Query: 48  SLQSLNLSFNRLSGSIPSATF-ITHTLKYVDLRGNQLSG----AFPSFIFNKSSLQDLDL 102
            +QSL++    LS +  +    +    + V L    L+        S +    +L +L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 103 SYNALSGEIPANICSNL----PFLEYISLSQNMFH 133
             N L       +   L      ++ +SL      
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-07
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 9/87 (10%)

Query: 116 CSNLPFLEYISLSQNMFHG----GIPSALSKCTYLQILGLSFNDFSGAIPKEIG-----N 166
                 L  + L+           + + L     L+ L LS N    A   ++       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 167 VTKLKELYLVRNRLQGEIPRELSNLAE 193
              L++L L       E+   L  L +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-06
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 24/105 (22%)

Query: 71  HTLKYVDLRGNQLSG----AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYIS 126
             L+ + L    +S     +  + +    SL++LDLS N L       +  ++       
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR------ 422

Query: 127 LSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLK 171
                              L+ L L    +S  +   +  + K K
Sbjct: 423 --------------QPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 5e-06
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 22  SHRVTVFNVSGLNLTGTIPSQL-GNLSSLQSLNLSFNRLSG----SIPSATFITHTLKYV 76
           S  +   ++    L+    ++L   L   Q + L    L+      I SA  +   L  +
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 77  DLRGNQLSGAFPSFIF-----NKSSLQDLDLSYN 105
           +LR N+L       +          +Q L L   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 1e-04
 Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 26/131 (19%)

Query: 3   NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGT----IPSQLGNLSSLQSLNLSFNR 58
           N                     + V  ++  +++ +    + + L    SL+ L+LS N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 59  LSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIP---ANI 115
           L  +                    L  +          L+ L L     S E+      +
Sbjct: 409 LGDAGILQ----------------LVESVRQ---PGCLLEQLVLYDIYWSEEMEDRLQAL 449

Query: 116 CSNLPFLEYIS 126
             + P L  IS
Sbjct: 450 EKDKPSLRVIS 460

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 50  QSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSG 109
           Q+L+L+   L   +     ++  +       + +        F+   +Q +DLS + +  
Sbjct: 3   QTLDLTGKNLHPDVTG-RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 60

Query: 110 EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQIL 149
                I S    L+ +SL        I + L+K + L  L
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 6e-04
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 14  TGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSG-SIPSATFITHT 72
             VT  + S  V  F      +   +         +Q ++LS + +   ++         
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSK 72

Query: 73  LKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101
           L+ + L G +LS    + +   S+L  L+
Sbjct: 73  LQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.1 bits (110), Expect = 2e-07
 Identities = 28/186 (15%), Positives = 48/186 (25%), Gaps = 16/186 (8%)

Query: 11  CNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT 70
           C  T V C            +G  L   IP  +        L L+ N L        F  
Sbjct: 8   CEGTTVDC------------TGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR 52

Query: 71  HTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
                                F  +S             EI   +   L  L+ ++L  N
Sbjct: 53  LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112

Query: 131 MFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSN 190
                +P +      L  L    ++              L++  L     +   P ++ +
Sbjct: 113 QISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD 171

Query: 191 LAELEL 196
           +   +L
Sbjct: 172 VQIKDL 177

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 1e-05
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 76  VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG 135
           VD  G  L    P  I       +L L+ N L       +   LP L  + L +N   G 
Sbjct: 13  VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 136 IPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELE 195
            P+A    +++Q L L  N       K    + +LK L L  N++   +P    +L  L 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 196 LM 197
            +
Sbjct: 130 SL 131

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 5/131 (3%)

Query: 2   KNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSG 61
                               +  +    +    +          L  L++LNL  N++S 
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116

Query: 62  SIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF 121
            +P +    ++L  ++L  N  +       F +   +   L+  A     P    S +  
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAP----SKVRD 171

Query: 122 LEYISLSQNMF 132
           ++   L  + F
Sbjct: 172 VQIKDLPHSEF 182

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-07
 Identities = 31/206 (15%), Positives = 54/206 (26%), Gaps = 48/206 (23%)

Query: 44  GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103
             ++S   +N     L+ ++P    +      + L  N L     + +   + L  L+L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 104 YNALSGEIPANICSNL-------------------------------------------- 119
              L+          L                                            
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179
             L+ + L  N      P  L+    L+ L L+ N+ +      +  +  L  L L  N 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 180 LQGEIPRELSNLAELELMSLFDNELQ 205
           L   IP+       L    L  N   
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 3   NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS 62
             N    +                  N    NLT      L  L +L +L L  N L  +
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN----NLTELPAGLLNGLENLDTLLLQENSLY-T 186

Query: 63  IPSATFITHTLKYVDLRGNQL 83
           IP   F +H L +  L GN  
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPW 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 6e-07
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 27  VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGA 86
           V +++  +LT  +   L  L  +  L+LS NRL    P+   +        L+ +  +  
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA---LAALRCLEVLQASDNALE 56

Query: 87  FPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG 134
               + N   LQ+L L  N L          + P L  ++L  N    
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 74  KYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133
           + + L    L+      +     +  LDLS+N L    PA   + L  LE +  S N   
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALE 56

Query: 134 GGIPSALSKCTYLQILGLSFNDF-SGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLA 192
                 ++    LQ L L  N     A  + + +  +L  L L  N L  +       LA
Sbjct: 57  --NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLA 113

Query: 193 EL 194
           E+
Sbjct: 114 EM 115

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 6e-06
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 108 SGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNV 167
           S     ++C   P LE +++S N     +P+   +   L+ L  SFN  +  +P+   N 
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA-EVPELPQN- 325

Query: 168 TKLKELYLVRNRLQGEIPRELSNLAELEL 196
             LK+L++  N L+ E P    ++ +L +
Sbjct: 326 --LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 7e-06
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 10/112 (8%)

Query: 11  CNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFIT 70
                         +          +  I S      SL+ LN+S N+L   +P+     
Sbjct: 248 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---P 303

Query: 71  HTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL 122
             L+ +    N L+   P       +L+ L + YN L  E P +I  ++  L
Sbjct: 304 PRLERLIASFNHLA-EVPELP---QNLKQLHVEYNPLR-EFP-DIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 3   NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS 62
                    +    +       +   NVS   L   +P+    L   + L  SFN L+  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-E 318

Query: 63  IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103
           +P    +   LK + +  N L   FP       S++DL ++
Sbjct: 319 VPE---LPQNLKQLHVEYNPLRE-FPDIP---ESVEDLRMN 352

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 4e-05
 Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 3/136 (2%)

Query: 71  HTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
           H    +    +         +    +L +L +        +       L  L  +++ ++
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 131 MFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ-GEIPRELS 189
                 P A      L  L LSFN    ++  +      L+EL L  N L      R L 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 190 NLAELELMSLFDNELQ 205
              E  L  + + +LQ
Sbjct: 126 RWEEEGLGGVPEQKLQ 141

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 3   NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS 62
               S      + +T   +  ++T        ++   P  L +L +L  ++L  N++S  
Sbjct: 153 LQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210

Query: 63  IPSATFITHTLKYVDLRGNQ 82
            P A      L  V L  NQ
Sbjct: 211 SPLANT--SNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 71  HTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS 128
             L  +    N++S   P  + +  +L ++ L  N +S   P    +N   L  ++L+
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLT 225

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 4e-04
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 10/72 (13%)

Query: 71  HTLKYVDLRGNQLSGAFPSFIFNK------SSLQDLDLSYNALSGE----IPANICSNLP 120
             L+ + L    LS    + + +         LQ L L YN +  +    +   I   +P
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 121 FLEYISLSQNMF 132
            L ++ L+ N F
Sbjct: 303 DLLFLELNGNRF 314

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 8e-04
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 85  GAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
              P+ +F+  S    LD+S   +   +P+    NL  L   S    
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 8e-04
 Identities = 6/44 (13%), Positives = 13/44 (29%)

Query: 109 GEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLS 152
            E+P ++         + +S+   H      L     L+     
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 10/56 (17%), Positives = 14/56 (25%), Gaps = 15/56 (26%)

Query: 11 CNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSA 66
          C+     C                +T  IPS L    +   L     +L      A
Sbjct: 8  CSNRVFLC------------QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGA 48

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 72  TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM 131
           + +    + ++++   PS +    +  +L      L   I     S    LE I +SQN 
Sbjct: 9   SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQND 64

Query: 132 FHGGI 136
               I
Sbjct: 65  VLEVI 69

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 91  IFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN--MFHGGIPSALSKCTYLQI 148
           +  ++    L+   +         I  N+P L  ++LS N       + S + K   L+I
Sbjct: 38  LVAQNIDVVLNRRSSMA--ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI 95

Query: 149 LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAEL 194
           L LS N+       +     KL+EL+L  N L      + + ++ +
Sbjct: 96  LNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 18/124 (14%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 29  NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP 88
           ++ G  +   I +    L    +++ S N +   +     +   LK + +  N++     
Sbjct: 24  DLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRR-LKTLLVNNNRICRIGE 80

Query: 89  SFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS---QNMFHGGIPSALSKCTY 145
                   L +L L+ N+L      +  ++L  L Y+ +               + K   
Sbjct: 81  GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ 140

Query: 146 LQIL 149
           +++L
Sbjct: 141 VRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 8/137 (5%)

Query: 41  SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100
           +Q  N    + L+L   ++   I +          +D   N++             L+ L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTL 68

Query: 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMF----HGGIPSALSKCTYLQILGLSFNDF 156
            ++ N +         +  P L  + L+ N           ++L   TYL IL     + 
Sbjct: 69  LVNNNRICRIGEGLDQAL-PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 157 SGAIPKEIGNVTKLKEL 173
                  I  V +++ L
Sbjct: 128 KHYRLYVIYKVPQVRVL 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.59
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.19
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.07
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.64
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.75
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.63
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.26
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.3

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=5.7e-26  Score=168.33  Aligned_cols=200  Identities=37%  Similarity=0.579  Sum_probs=144.1

Q ss_pred             CCCCCCCCCc--cceeeecCCCc--eEEEEEecCCcccc--cCCCCCCCCCCCcEEEeec-CcceeecCccccCCCCccE
Q 037027            3 NWNTSSPVCN--WTGVTCDVHSH--RVTVFNVSGLNLTG--TIPSQLGNLSSLQSLNLSF-NRLSGSIPSATFITHTLKY   75 (205)
Q Consensus         3 ~~~~~~~~c~--~~~~~~~~~~~--~l~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~   75 (205)
                      .|..+.++|.  |.|++|+....  +|+.|+++++++.+  .+|+.++++++|+.|++++ |.+...+|..+..+++|++
T Consensus        26 sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~  105 (313)
T d1ogqa_          26 SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY  105 (313)
T ss_dssp             TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSE
T ss_pred             CCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccch
Confidence            5988899995  99999976443  79999999998876  4788999999999999986 6787678888999999999


Q ss_pred             EEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcC--------------
Q 037027           76 VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALS--------------  141 (205)
Q Consensus        76 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~--------------  141 (205)
                      |++++|.+....+..+..+.+|+++++..|.+.+.++..+ ..++.++.+++++|.+.+.+|..+.              
T Consensus       106 L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l-~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n  184 (313)
T d1ogqa_         106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             EEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred             hhhccccccccccccccchhhhcccccccccccccCchhh-ccCcccceeeccccccccccccccccccccccccccccc
Confidence            9999998775555555566666666666665543343333 4445555555555444333333332              


Q ss_pred             ----------------------------------CCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchh
Q 037027          142 ----------------------------------KCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE  187 (205)
Q Consensus       142 ----------------------------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~  187 (205)
                                                        .+++++.+++.++.+.+. +..+..+++++.|++++|++++.+|+.
T Consensus       185 ~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~  263 (313)
T d1ogqa_         185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQG  263 (313)
T ss_dssp             EEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccCccCeecccCChH
Confidence                                              233344444444444332 234566788889999999998888999


Q ss_pred             ccCCCCCcEEeccCCcC
Q 037027          188 LSNLAELELMSLFDNEL  204 (205)
Q Consensus       188 l~~~~~L~~l~l~~n~l  204 (205)
                      ++.+++|++|++++|.|
T Consensus       264 l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         264 LTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             GGGCTTCCEEECCSSEE
T ss_pred             HhCCCCCCEEECcCCcc
Confidence            99999999999999876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.3e-23  Score=149.38  Aligned_cols=178  Identities=24%  Similarity=0.245  Sum_probs=156.6

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      +++++.|++++|.+....+..|+++++|+.|++.+|.+....  .+..+++|++|++++|.+. ..+..+..+++|+.|+
T Consensus        30 p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (266)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccccccccc-cccccccccccccccc
Confidence            357999999999998767778999999999999999998432  4568899999999999987 5567778899999999


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +.++.+. .+....+..+.++..+++.+|.+....+..+..++.++.+++++|.+.+..+..+..+++|++|++++|+++
T Consensus       107 l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         107 VSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccc-eeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            9999987 666666688899999999999998766677888999999999999998777788889999999999999999


Q ss_pred             ccCchhccCCCCCcEEeccCCcC
Q 037027          182 GEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       182 ~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                       .+|+.+..+++|+.|++++|++
T Consensus       186 -~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         186 -TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCB
T ss_pred             -ccChhHCCCCCCCEEEecCCCC
Confidence             7788888999999999999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.8e-22  Score=147.43  Aligned_cols=183  Identities=22%  Similarity=0.196  Sum_probs=147.2

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeec-------------------------CccccCCCCccE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSI-------------------------PSATFITHTLKY   75 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------~~~~~~l~~L~~   75 (205)
                      .+..++.|++++|.++...+..|.++++|++++++++.+....                         +..+..+++|++
T Consensus        30 ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            3446889999999998777778999999999999998764222                         334555677888


Q ss_pred             EEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecce
Q 037027           76 VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFND  155 (205)
Q Consensus        76 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  155 (205)
                      |++..+.+....+..+....+|+.+++.+|.+. .++...+..++.++.|++++|.+....+..+..+++|+.+++++|.
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc
Confidence            888888776555556666778888888888887 5665555778888899999988876667788888899999999988


Q ss_pred             eecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          156 FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       156 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +.+..|..+..++++++++++.|.+.+..+..|..+++|++|++++|++
T Consensus       189 l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            8877788888889999999999999877778888999999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=4.9e-21  Score=141.00  Aligned_cols=195  Identities=24%  Similarity=0.305  Sum_probs=141.0

Q ss_pred             CCCCCCCccceeeecC---------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccE
Q 037027            5 NTSSPVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKY   75 (205)
Q Consensus         5 ~~~~~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   75 (205)
                      +.....|.+..++|..         .++.++.|++++|.++...+..|+++++|+.|++.++.+....+..|..+++|++
T Consensus         4 ~p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_           4 CPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER   83 (305)
T ss_dssp             CCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CCCCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCE
Confidence            4455668888888843         2467999999999998666667999999999999999999777788999999999


Q ss_pred             EEecCcccccCCCcc------------------------------------------------ccCCCCccEEEcccccC
Q 037027           76 VDLRGNQLSGAFPSF------------------------------------------------IFNKSSLQDLDLSYNAL  107 (205)
Q Consensus        76 L~l~~~~~~~~~~~~------------------------------------------------l~~l~~L~~L~l~~~~~  107 (205)
                      |++.+|.++. .+..                                                +..+++|+.+++.++.+
T Consensus        84 L~l~~n~l~~-l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          84 LYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             EECCSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             ecccCCccCc-CccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            9998887652 1111                                                11123444444444444


Q ss_pred             CcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchh
Q 037027          108 SGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE  187 (205)
Q Consensus       108 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~  187 (205)
                      . .++..   ..++++.+++++|..+...+..+..++.++.|++++|.+.+..+..+..+++|++|++++|+++ .+|..
T Consensus       163 ~-~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~  237 (305)
T d1xkua_         163 T-TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG  237 (305)
T ss_dssp             C-SCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred             c-ccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccc
Confidence            3 33322   2355666777776666555666777777888888888777666777777888888888888887 55777


Q ss_pred             ccCCCCCcEEeccCCcCC
Q 037027          188 LSNLAELELMSLFDNELQ  205 (205)
Q Consensus       188 l~~~~~L~~l~l~~n~l~  205 (205)
                      +..+++|+.|++++|+|+
T Consensus       238 l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         238 LADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTTCSSCCEEECCSSCCC
T ss_pred             cccccCCCEEECCCCccC
Confidence            888888888888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3e-20  Score=134.23  Aligned_cols=174  Identities=27%  Similarity=0.226  Sum_probs=147.9

Q ss_pred             EEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccc
Q 037027           25 VTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSY  104 (205)
Q Consensus        25 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  104 (205)
                      ..+++-++.+++ .+|+.+.  ++++.|++++|.+....+.+|..+++|++|++.+|.++. ++ .+..+++|++|++++
T Consensus        12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCS
T ss_pred             CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccc
Confidence            344578888887 5676553  579999999999997777889999999999999999873 33 345789999999999


Q ss_pred             ccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccC
Q 037027          105 NALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEI  184 (205)
Q Consensus       105 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~  184 (205)
                      |++. ..+.. +..++.|+.++++++.+....+..+..+.++..+++.+|.+....+..+..++.++.+++++|++++..
T Consensus        87 N~l~-~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          87 NQLQ-SLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             SCCS-SCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             cccc-ccccc-cccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            9997 44444 478899999999999988766778888999999999999998777777888999999999999999877


Q ss_pred             chhccCCCCCcEEeccCCcCC
Q 037027          185 PRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       185 ~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      ++.+..+++|++|++++|.|+
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccceeecccCCCc
Confidence            888999999999999999875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=6.1e-21  Score=141.00  Aligned_cols=181  Identities=27%  Similarity=0.377  Sum_probs=144.7

Q ss_pred             CCceEEEEEecC-CcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccE
Q 037027           21 HSHRVTVFNVSG-LNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQD   99 (205)
Q Consensus        21 ~~~~l~~l~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~   99 (205)
                      ..++++.|++++ +++.+.+|..|+++++|+.|++++|.+....+..+..+..|+++++..|.+....|..+..++.+++
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccce
Confidence            556899999987 6788889999999999999999999998777777788888888888888777677777777777777


Q ss_pred             EEcccccCCcccCccc-----------------------------------------------ccCCCCcceeeeccccc
Q 037027          100 LDLSYNALSGEIPANI-----------------------------------------------CSNLPFLEYISLSQNMF  132 (205)
Q Consensus       100 L~l~~~~~~~~~~~~~-----------------------------------------------~~~~~~L~~l~l~~~~~  132 (205)
                      +++.+|.+.+.++...                                               ...++.++.+++.++.+
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7777765543222111                                               12335566777777777


Q ss_pred             ccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027          133 HGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       133 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                      ... +..+..+++++.|++++|++.+.+|..+..+++|++|++++|++++.+|+ +..+++|+.+++.+|+
T Consensus       234 ~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         234 AFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             ccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            644 34577789999999999999989999999999999999999999988874 5788999999999996

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.2e-19  Score=129.31  Aligned_cols=174  Identities=22%  Similarity=0.262  Sum_probs=140.9

Q ss_pred             EEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccC---------------------
Q 037027           28 FNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGA---------------------   86 (205)
Q Consensus        28 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---------------------   86 (205)
                      +..++.+++ .+|..+.  ..++.|++++|++....+.+|.+++.|++|+++++.+...                     
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            355666665 5565553  5689999999999977777899999999999998876421                     


Q ss_pred             ----CCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCc
Q 037027           87 ----FPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPK  162 (205)
Q Consensus        87 ----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  162 (205)
                          .+..+..+++|++|++..|.+. .+....+.....|+.+++.+|.++...+..+..+++|+.|++++|.+....+.
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             cccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence                1333455678999999998886 55555557778899999999999866667788889999999999998877788


Q ss_pred             cccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027          163 EIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       163 ~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      .+..+++|+.+++..|++++..|..|..+++|++|++++|.++
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhcccccccccccc
Confidence            8888999999999999999888899999999999999999864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=5.4e-17  Score=119.10  Aligned_cols=181  Identities=21%  Similarity=0.255  Sum_probs=140.1

Q ss_pred             CCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee-------------------------------------
Q 037027           20 VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS-------------------------------------   62 (205)
Q Consensus        20 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------------------------------------   62 (205)
                      ...++++.++++++.+....|..|.++++|+.+++.+|++...                                     
T Consensus        52 ~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~  131 (305)
T d1xkua_          52 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL  131 (305)
T ss_dssp             TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred             hccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhcccccccccc
Confidence            4567899999999998877788889999999999888754311                                     


Q ss_pred             ----------cCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeeccccc
Q 037027           63 ----------IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF  132 (205)
Q Consensus        63 ----------~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  132 (205)
                                ....+..+++|+.+++.++.+. ..+..+  .++|++|++.+|.... .....+..++.++.+++++|.+
T Consensus       132 ~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~-~~~~~~~~~~~l~~L~~s~n~l  207 (305)
T d1xkua_         132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSI  207 (305)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCC-CChhHhhccccccccccccccc
Confidence                      0111223456788888887766 333332  5789999999998874 4444457889999999999999


Q ss_pred             ccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchh------ccCCCCCcEEeccCCcCC
Q 037027          133 HGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE------LSNLAELELMSLFDNELQ  205 (205)
Q Consensus       133 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~------l~~~~~L~~l~l~~n~l~  205 (205)
                      .+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|+|+......      +....+|+.+++.+|+++
T Consensus       208 ~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         208 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            8777788889999999999999987 55778889999999999999998543333      345678999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.3e-17  Score=114.90  Aligned_cols=194  Identities=14%  Similarity=0.055  Sum_probs=120.6

Q ss_pred             CCccceeeecC---------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee-cCccccCCCCccEEEec
Q 037027           10 VCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS-IPSATFITHTLKYVDLR   79 (205)
Q Consensus        10 ~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~   79 (205)
                      .|....+.|..         -.++++.|+++++.+....+..|+++++|+.|++++|.+... .+.+|..++.++++.+.
T Consensus         7 ~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1           7 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             EECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45555666631         124788999999998866666789999999999999987643 45678889999999886


Q ss_pred             C-cccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCC-cceEEEeecceee
Q 037027           80 G-NQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT-YLQILGLSFNDFS  157 (205)
Q Consensus        80 ~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~  157 (205)
                      . +.+....+..+..+++|+++++.++.+...........+..+......++.+....+..+..+. .+..+++.+|.+.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            5 4555566677888999999999999876222222223334444444445455433334444332 5566666666655


Q ss_pred             cccCccccccCCceEE-EeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          158 GAIPKEIGNVTKLKEL-YLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       158 ~~~~~~~~~~~~L~~l-~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      ......+ ..+++.++ ++.+|.+++..+..|.++++|+.|++++|+|
T Consensus       167 ~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         167 EIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  213 (242)
T ss_dssp             EECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC
T ss_pred             ccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcC
Confidence            3333222 23343333 3344455543344556666666666666655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.1e-17  Score=113.59  Aligned_cols=165  Identities=24%  Similarity=0.369  Sum_probs=134.3

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      ...++.|++.++.+....  .+..+++|+.|++++|++.+..  .+..+++|++|++.+|.++. .+ .+..+++|+.++
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence            346889999999886432  3778999999999999998533  46789999999999999873 33 477899999999


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +.++.+. .++ .+ ..++.++.++++++.+++  ...+..+++|+.+++.+|.+.+..  .+..+++|++|++++|.++
T Consensus       119 l~~~~~~-~~~-~l-~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         119 LEHNGIS-DIN-GL-VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTSCCC-CCG-GG-GGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccc-ccc-cc-cccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCC
Confidence            9999886 443 23 678899999999998864  345677899999999999987532  3778999999999999998


Q ss_pred             ccCchhccCCCCCcEEeccC
Q 037027          182 GEIPRELSNLAELELMSLFD  201 (205)
Q Consensus       182 ~~~~~~l~~~~~L~~l~l~~  201 (205)
                      + ++ .+..+++|+.|++++
T Consensus       192 ~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 D-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             B-CG-GGTTCTTCSEEEEEE
T ss_pred             C-Ch-hhcCCCCCCEEEccC
Confidence            4 44 689999999999975

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=9.7e-18  Score=115.20  Aligned_cols=170  Identities=22%  Similarity=0.245  Sum_probs=127.0

Q ss_pred             EEEecCCcccccCCCCCCCCCCCcEEEeecCccee-ecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccc
Q 037027           27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSG-SIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN  105 (205)
Q Consensus        27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  105 (205)
                      .++.++++++ .+|..+  .++++.|++++|.+.. .....|..+++|++|++.++.+....+..+..+.+|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4566677776 566555  2689999999999974 44667889999999999999998777888888999999999999


Q ss_pred             cCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCc
Q 037027          106 ALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIP  185 (205)
Q Consensus       106 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~  185 (205)
                      .+. .++...|.++++|++|++++|.++...+.+|..+++|+++++++|++..... ...-...++...+..+.++-..|
T Consensus        89 ~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~-~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          89 KIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG-GHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             ccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc-hHHHhhhhhhhcccCCCeEeCCC
Confidence            998 7777777999999999999999997777889999999999999998753222 11112234445555566553444


Q ss_pred             hhccCCCCCcEEeccCCcC
Q 037027          186 RELSNLAELELMSLFDNEL  204 (205)
Q Consensus       186 ~~l~~~~~L~~l~l~~n~l  204 (205)
                      ..+   ..++.+++..+.+
T Consensus       167 ~~l---~~~~l~~L~~n~l  182 (192)
T d1w8aa_         167 SKV---RDVQIKDLPHSEF  182 (192)
T ss_dssp             TTT---TTSBGGGSCTTTC
T ss_pred             hhh---cCCEeeecCHhhC
Confidence            433   3444556666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=5.3e-17  Score=111.44  Aligned_cols=128  Identities=20%  Similarity=0.219  Sum_probs=87.1

Q ss_pred             cEEEeecCcceeecCccccCCCCccEEEecCccccc-CCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeec
Q 037027           50 QSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG-AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS  128 (205)
Q Consensus        50 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~  128 (205)
                      +.++.+++.++ .+|..+  .+.+++|++++|.++. .....|..+.+|++|++++|.+. .++...+..++.|+.|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeeec
Confidence            45666666666 344433  2567777777777753 33455566777777777777776 4554455667777777777


Q ss_pred             ccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          129 QNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       129 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +|+++...+.+|..+++|+.|++++|.+....+..+..+++|+++++++|.+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            77777655666777777777777777777666667777777777777777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.4e-16  Score=109.98  Aligned_cols=161  Identities=28%  Similarity=0.335  Sum_probs=124.8

Q ss_pred             CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027           22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD  101 (205)
Q Consensus        22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  101 (205)
                      .++++.|++.++++.. + +.++.+++|+.|++++|.+.+..  .+..+++|++|++.+|.+.. .+ .+..++.|++++
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-cccccccccccc
Confidence            4578889999988763 2 34778899999999999887433  37889999999999988763 22 467889999999


Q ss_pred             cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027          102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +.++... ... . +..+++|+.+++++|.+..  .+.+..+++++.+++.+|.+.+..  .+..+++|++|++++|+++
T Consensus       113 l~~~~~~-~~~-~-~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQIT-DID-P-LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCC-CCG-G-GTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccc-ccc-c-cchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC
Confidence            9988775 332 2 3678899999999998863  345778889999999999886432  4678899999999999988


Q ss_pred             ccCchhccCCCCCcEE
Q 037027          182 GEIPRELSNLAELELM  197 (205)
Q Consensus       182 ~~~~~~l~~~~~L~~l  197 (205)
                      + + +.++.+++|+.|
T Consensus       186 ~-i-~~l~~L~~L~~L  199 (199)
T d2omxa2         186 D-I-SVLAKLTNLESL  199 (199)
T ss_dssp             C-C-GGGGGCTTCSEE
T ss_pred             C-C-ccccCCCCCCcC
Confidence            4 3 357888888865

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3e-16  Score=110.36  Aligned_cols=167  Identities=22%  Similarity=0.293  Sum_probs=102.2

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      ...+++.|++.++++.. + +.+.++++|+.|++++|.+.+.  ..+..+++++++.+.++.++. . ..+..++.|+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~--~~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC--GGGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecc--ccccccccccccccccccccc-c-cccccccccccc
Confidence            34567888888888763 3 3477888888888888887643  236778888888888887653 2 345667778888


Q ss_pred             EcccccCCcccCc--------------------ccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeeccc
Q 037027          101 DLSYNALSGEIPA--------------------NICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI  160 (205)
Q Consensus       101 ~l~~~~~~~~~~~--------------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  160 (205)
                      .++++...+ ...                    ..+...+.++.+++.+|.+.+.  ..+..+++|+.|++++|.+.+. 
T Consensus       113 ~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-  188 (227)
T d1h6ua2         113 DLTSTQITD-VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-  188 (227)
T ss_dssp             ECTTSCCCC-CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-
T ss_pred             ccccccccc-cchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccCCC-
Confidence            877765431 111                    0113344566666666655421  2355566666666666665432 


Q ss_pred             CccccccCCceEEEeecccccccCchhccCCCCCcEEecc
Q 037027          161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLF  200 (205)
Q Consensus       161 ~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~  200 (205)
                      + .+..+++|++|++++|++++. + .+.++++|+.|+++
T Consensus       189 ~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         189 S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence            2 245566666666666666532 2 25566666666664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=8e-16  Score=108.19  Aligned_cols=148  Identities=23%  Similarity=0.212  Sum_probs=112.3

Q ss_pred             cCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccC------------
Q 037027           19 DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGA------------   86 (205)
Q Consensus        19 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------   86 (205)
                      ...+++++.|+++++.+....+  +..+++++.+++.++.+.+  ...+..++.|+.+.+..+.....            
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~--i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  134 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL  134 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC--CGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred             HhcCCCCcEeecCCceeecccc--ccccccccccccccccccc--cccccccccccccccccccccccchhccccchhhh
Confidence            4567899999999998874333  7889999999999988763  23567888888888887764421            


Q ss_pred             --------CCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeec
Q 037027           87 --------FPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSG  158 (205)
Q Consensus        87 --------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  158 (205)
                              ....+....+|++|++.+|.+.+ .. . +..+++|+.|++++|.+++.  ..+..+++|++|++++|++.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~-l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LT-P-LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCB
T ss_pred             hchhhhhchhhhhcccccccccccccccccc-ch-h-hcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCC
Confidence                    11123445779999999988762 22 2 37789999999999998743  347888999999999999875


Q ss_pred             ccCccccccCCceEEEeec
Q 037027          159 AIPKEIGNVTKLKELYLVR  177 (205)
Q Consensus       159 ~~~~~~~~~~~L~~l~l~~  177 (205)
                      ..  .+..+++|+.|++++
T Consensus       210 i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         210 VS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CG--GGTTCTTCCEEEEEE
T ss_pred             Cc--ccccCCCCCEEEeeC
Confidence            43  377899999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.1e-15  Score=105.45  Aligned_cols=149  Identities=23%  Similarity=0.308  Sum_probs=123.0

Q ss_pred             CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcc
Q 037027           44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE  123 (205)
Q Consensus        44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  123 (205)
                      +.+++++.|++.++.+.+.  ..+..+++|++|++++|.++...  .+..+++|++|++.+|.+. .++.  +..++.|+
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~  109 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP--LANLTNLT  109 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-cccc--cccccccc
Confidence            3567899999999999843  34778999999999999987433  3788999999999999886 4443  37889999


Q ss_pred             eeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027          124 YISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       124 ~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                      .++++++....  .+.+..+++|+.+++++|.+.. . ..+..+++++++++.+|.+++.  ..++.+++|++|++++|+
T Consensus       110 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         110 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNK  183 (199)
T ss_dssp             EEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             ccccccccccc--ccccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCC
Confidence            99999998763  3457788999999999998863 2 3577899999999999999843  358899999999999998


Q ss_pred             CC
Q 037027          204 LQ  205 (205)
Q Consensus       204 l~  205 (205)
                      ++
T Consensus       184 i~  185 (199)
T d2omxa2         184 VS  185 (199)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=7.4e-16  Score=116.09  Aligned_cols=168  Identities=27%  Similarity=0.326  Sum_probs=117.9

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      ..++++.++++++.+..  .+.+..+++++.+++.+|.+.+.  ..+..+++|++++++++.+...  ..+..+..++.+
T Consensus       217 ~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~l  290 (384)
T d2omza2         217 ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNI--SPLAGLTALTNL  290 (384)
T ss_dssp             GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             ccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCC--CcccccccCCEeeccCcccCCC--Cccccccccccc
Confidence            33456666776666542  22455666777777777766532  2355667777777777666522  224556677777


Q ss_pred             EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027          101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL  180 (205)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l  180 (205)
                      .+..+.+. .+. . +..++.++.+++++|++++.  ..+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|++
T Consensus       291 ~~~~n~l~-~~~-~-~~~~~~l~~L~ls~n~l~~l--~~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         291 ELNENQLE-DIS-P-ISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             ECCSSCCS-CCG-G-GGGCTTCSEEECCSSCCSCC--GGGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCC
T ss_pred             cccccccc-ccc-c-cchhcccCeEECCCCCCCCC--cccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcC
Confidence            77777665 222 2 25678899999999988753  237788999999999998864 33 578899999999999999


Q ss_pred             cccCchhccCCCCCcEEeccCCc
Q 037027          181 QGEIPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       181 ~~~~~~~l~~~~~L~~l~l~~n~  203 (205)
                      ++..|  +.++++|+.|++++|.
T Consensus       364 ~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         364 SDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCChh--hccCCCCCEeeCCCCc
Confidence            85543  8899999999999884

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.5e-16  Score=102.12  Aligned_cols=127  Identities=14%  Similarity=0.135  Sum_probs=70.3

Q ss_pred             cCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcce
Q 037027           68 FITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQ  147 (205)
Q Consensus        68 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~  147 (205)
                      .+..++++|++.+|.++ ..+..+..+.+|++|++++|.+. .++.  +..+++|++|++++|.++...+..+..+++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccCC--cccCcchhhhhcccccccCCCccccccccccc
Confidence            34445555555555555 22333344556666666666665 4422  24556666666666666543333344566666


Q ss_pred             EEEeecceeecccC-ccccccCCceEEEeecccccccC---chhccCCCCCcEEe
Q 037027          148 ILGLSFNDFSGAIP-KEIGNVTKLKELYLVRNRLQGEI---PRELSNLAELELMS  198 (205)
Q Consensus       148 ~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~---~~~l~~~~~L~~l~  198 (205)
                      .|++++|.+.+... ..+..+++|+++++++|++++..   +..++.+++|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            66666666543211 34556677777777777665322   13456677777666

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.5e-14  Score=100.43  Aligned_cols=148  Identities=22%  Similarity=0.245  Sum_probs=121.5

Q ss_pred             CCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcce
Q 037027           45 NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEY  124 (205)
Q Consensus        45 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  124 (205)
                      .+..++.|++.++.+...  ..+..+++|++|++++|.++.. + .+..+++|++|++++|.++ .++ .+ ..++.|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DLS-SL-KDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CGG-GG-TTCTTCCE
T ss_pred             HhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc-ccc-cc-cccccccc
Confidence            467899999999998743  2478899999999999998743 3 3567899999999999997 554 23 67899999


Q ss_pred             eeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027          125 ISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       125 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l  204 (205)
                      +++.++.+..  ...+..++.++.+++..|.+.+  +..+..+++|+++++++|.+++. + .+..+++|+.|++++|++
T Consensus       117 L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         117 LSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             EECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred             cccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCC
Confidence            9999998853  3467788999999999998864  33566789999999999999843 3 488999999999999987


Q ss_pred             C
Q 037027          205 Q  205 (205)
Q Consensus       205 ~  205 (205)
                      +
T Consensus       191 ~  191 (210)
T d1h6ta2         191 S  191 (210)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.4e-14  Score=109.03  Aligned_cols=170  Identities=25%  Similarity=0.370  Sum_probs=135.2

Q ss_pred             CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027           21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL  100 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  100 (205)
                      ..++++.++++++.+.+..|  +..+++|+.+++.+|.+.+  ...+..+++|+.+++.+|.++...  .+..+++|+++
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L  268 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTEL  268 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccccccCCEe
Confidence            44567788998888775443  4567889999999998874  345778899999999999887432  36678899999


Q ss_pred             EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027          101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL  180 (205)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l  180 (205)
                      +++++.+. .++.  +..++.++.+.+..+.+.+  ...+..+++++.+++++|.+.+..  .+..+++|++|++++|++
T Consensus       269 ~l~~~~l~-~~~~--~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         269 KLGANQIS-NISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             ECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCC
T ss_pred             eccCcccC-CCCc--ccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCC
Confidence            99999886 4432  2567888999999988864  345778899999999999987543  367899999999999999


Q ss_pred             cccCchhccCCCCCcEEeccCCcCC
Q 037027          181 QGEIPRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       181 ~~~~~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      ++ ++ .++.+++|++|++++|+++
T Consensus       342 ~~-l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         342 SD-VS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             CC-CG-GGGGCTTCCEEECCSSCCC
T ss_pred             CC-Ch-hHcCCCCCCEEECCCCcCC
Confidence            84 44 6899999999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-14  Score=102.13  Aligned_cols=181  Identities=16%  Similarity=0.058  Sum_probs=132.5

Q ss_pred             CCCceEEEEEecCCccccc-CCCCCCCCCCCcEEEeec-CcceeecCccccCCCCccEEEecCcccccCCCc-cccCCCC
Q 037027           20 VHSHRVTVFNVSGLNLTGT-IPSQLGNLSSLQSLNLSF-NRLSGSIPSATFITHTLKYVDLRGNQLSGAFPS-FIFNKSS   96 (205)
Q Consensus        20 ~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~   96 (205)
                      ...++++.|+++++.+... .+..|.+++.++.+.+.. +.+....+..|..+++|+++++.++.+....+. .+..+..
T Consensus        50 ~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~  129 (242)
T d1xwdc1          50 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK  129 (242)
T ss_dssp             TTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSC
T ss_pred             hccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccc
Confidence            4567899999999987654 456678899999998865 567667778889999999999999988633222 2334556


Q ss_pred             ccEEEcccccCCcccCcccccCCC-CcceeeecccccccCCCCCcCCCCcceEE-EeecceeecccCccccccCCceEEE
Q 037027           97 LQDLDLSYNALSGEIPANICSNLP-FLEYISLSQNMFHGGIPSALSKCTYLQIL-GLSFNDFSGAIPKEIGNVTKLKELY  174 (205)
Q Consensus        97 L~~L~l~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l-~l~~~~~~~~~~~~~~~~~~L~~l~  174 (205)
                      +..+...++.+. .++...+.+++ .+..+++.++.++...+..+ ...++..+ ++.+|.+....+..+..+++|++|+
T Consensus       130 l~~~~~~n~~l~-~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~  207 (242)
T d1xwdc1         130 VLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  207 (242)
T ss_dssp             EEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEE
T ss_pred             cccccccccccc-cccccccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEE
Confidence            666666666665 55554445544 68889999998885444444 44555555 4666777755566788899999999


Q ss_pred             eecccccccCchhccCCCCCcEEeccCC
Q 037027          175 LVRNRLQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       175 l~~~~l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      +++|++++..+..|.++++|+.+++.+.
T Consensus       208 Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         208 ISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             CTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             CCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            9999999666677888888888877653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.3e-16  Score=114.66  Aligned_cols=182  Identities=21%  Similarity=0.268  Sum_probs=132.6

Q ss_pred             CCceEEEEEecCCccccc-CCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcc-cccC-CCccccCCCCc
Q 037027           21 HSHRVTVFNVSGLNLTGT-IPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ-LSGA-FPSFIFNKSSL   97 (205)
Q Consensus        21 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~l~~l~~L   97 (205)
                      ...+++.|+++++.+... ....++++++|+.|++.++.+.+.....+..+++|++|++++|. +++. ....+..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            344788999999887643 34456788999999999998887677777888999999999974 4321 11223457899


Q ss_pred             cEEEccccc-CCcc-cCcccccCCCCcceeeecccc--cccC-CCCCcCCCCcceEEEeecce-eecccCccccccCCce
Q 037027           98 QDLDLSYNA-LSGE-IPANICSNLPFLEYISLSQNM--FHGG-IPSALSKCTYLQILGLSFND-FSGAIPKEIGNVTKLK  171 (205)
Q Consensus        98 ~~L~l~~~~-~~~~-~~~~~~~~~~~L~~l~l~~~~--~~~~-~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~  171 (205)
                      ++|+++++. +++. +........+.|+.+++.++.  +++. +......+++|++|++++|. +.+.....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            999999863 4321 112222335789999998763  3321 22234567899999999874 5666667778899999


Q ss_pred             EEEeecc-cccccCchhccCCCCCcEEeccCC
Q 037027          172 ELYLVRN-RLQGEIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       172 ~l~l~~~-~l~~~~~~~l~~~~~L~~l~l~~n  202 (205)
                      +|++++| .+++.....++.+++|+.|++.++
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            9999997 688777778889999999999887

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.3e-14  Score=95.29  Aligned_cols=111  Identities=20%  Similarity=0.162  Sum_probs=93.0

Q ss_pred             ccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCc
Q 037027           91 IFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKL  170 (205)
Q Consensus        91 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L  170 (205)
                      +.+..++++|++++|+++ .++. .+..+++|+.|++++|.++..  +.+..+++|+.|++++|.+....+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            456778999999999998 6764 447789999999999999743  457889999999999999986666666789999


Q ss_pred             eEEEeecccccccC-chhccCCCCCcEEeccCCcCC
Q 037027          171 KELYLVRNRLQGEI-PRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       171 ~~l~l~~~~l~~~~-~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      ++|++++|.+++.. ...+..+++|+++++++|+++
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc
Confidence            99999999998432 257889999999999999873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1.2e-13  Score=87.60  Aligned_cols=118  Identities=23%  Similarity=0.241  Sum_probs=66.6

Q ss_pred             cEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeec
Q 037027           74 KYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF  153 (205)
Q Consensus        74 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  153 (205)
                      |+|+++++.++ ..+ .+..+.+|++|++++|.+. .++..+ ..+++|+.+++++|.+++.  +.+..+++|+.+++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~-~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALENV--DGVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhh-hhhhccccccccccccccc--CccccccccCeEECCC
Confidence            34555565555 222 2455566666666666665 555443 4566666666666666532  2355666677777777


Q ss_pred             ceeeccc-CccccccCCceEEEeeccccccc---CchhccCCCCCcEE
Q 037027          154 NDFSGAI-PKEIGNVTKLKELYLVRNRLQGE---IPRELSNLAELELM  197 (205)
Q Consensus       154 ~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~~---~~~~l~~~~~L~~l  197 (205)
                      |.+.+.. ...+..+++|+++++++|++.+.   .......+|+++.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            6665332 23455667777777777776532   22333445666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=6.6e-14  Score=88.85  Aligned_cols=102  Identities=28%  Similarity=0.399  Sum_probs=87.0

Q ss_pred             cEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeec
Q 037027           98 QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVR  177 (205)
Q Consensus        98 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  177 (205)
                      |.|++++|.++ .++. + ..++.|+++++++|.++ .+|+.+..+++|+.|++++|.+.+. + .+..+++|+++++++
T Consensus         1 R~L~Ls~n~l~-~l~~-l-~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCcc-c-ccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            57899999997 6653 4 77899999999999998 5677789999999999999999743 3 478899999999999


Q ss_pred             ccccccC-chhccCCCCCcEEeccCCcCC
Q 037027          178 NRLQGEI-PRELSNLAELELMSLFDNELQ  205 (205)
Q Consensus       178 ~~l~~~~-~~~l~~~~~L~~l~l~~n~l~  205 (205)
                      |++++.. ...+..+++|+.+++++|+++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            9998543 367889999999999999873

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.7e-14  Score=102.27  Aligned_cols=175  Identities=21%  Similarity=0.216  Sum_probs=124.5

Q ss_pred             CCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecC-cceeecC-ccccCCCCccEEEecCcc-cccC-CCccccC-C
Q 037027           20 VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFN-RLSGSIP-SATFITHTLKYVDLRGNQ-LSGA-FPSFIFN-K   94 (205)
Q Consensus        20 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~-~~~~l~~-l   94 (205)
                      ..+++++.|++.++.+....+..++++++|+.|+++++ .+++... .....+++|++|++++|. +++. ....+.. .
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~  147 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  147 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             HhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccc
Confidence            35678999999999887666677888999999999986 4553322 223568999999999974 3211 1122222 4


Q ss_pred             CCccEEEcccc--cCCcccCcccccCCCCcceeeecccc-cccCCCCCcCCCCcceEEEeecc-eeecccCccccccCCc
Q 037027           95 SSLQDLDLSYN--ALSGEIPANICSNLPFLEYISLSQNM-FHGGIPSALSKCTYLQILGLSFN-DFSGAIPKEIGNVTKL  170 (205)
Q Consensus        95 ~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L  170 (205)
                      +.|+.|++.++  .+++.....+...+++|++|++++|. +++.....+..+++|++|++++| .+.+.....+..+++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            68999999875  34433233344568999999999874 66666677888999999999997 5666666677889999


Q ss_pred             eEEEeecccccccCchhc-cCCCCCc
Q 037027          171 KELYLVRNRLQGEIPREL-SNLAELE  195 (205)
Q Consensus       171 ~~l~l~~~~l~~~~~~~l-~~~~~L~  195 (205)
                      ++|++.+| +.+.....+ ..+++|+
T Consensus       228 ~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         228 KTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             CEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            99999998 543333333 3566665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=5.2e-15  Score=101.70  Aligned_cols=128  Identities=20%  Similarity=0.201  Sum_probs=69.3

Q ss_pred             ccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCC
Q 037027           65 SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT  144 (205)
Q Consensus        65 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  144 (205)
                      ..+..+++|++|++++|.++.. + .+..+.+|++|++++|.+. .++... ..++.|+.+++++|.++..  +.+..++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~-~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLD-AVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHH-HHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccc-ccccccccccccccccccc--ccccccc
Confidence            3445555666666666655522 2 3455566666666666654 443222 3344566666666666532  2344556


Q ss_pred             cceEEEeecceeecccC-ccccccCCceEEEeecccccccCch----------hccCCCCCcEEe
Q 037027          145 YLQILGLSFNDFSGAIP-KEIGNVTKLKELYLVRNRLQGEIPR----------ELSNLAELELMS  198 (205)
Q Consensus       145 ~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~~~----------~l~~~~~L~~l~  198 (205)
                      +|+.|++++|.+.+... ..+..+++|++|++++|++....+.          .+..+|+|+.||
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            66666666666543221 3455666677777777666532221          245667777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8e-12  Score=82.24  Aligned_cols=107  Identities=19%  Similarity=0.130  Sum_probs=78.3

Q ss_pred             CccEEEecCcccccCCCccccCCCCccEEEcccc-cCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEE
Q 037027           72 TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN-ALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILG  150 (205)
Q Consensus        72 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~  150 (205)
                      ....++..++... ..+..+..+.+|++|++.++ .++ .++...|.++++|+.|++++|+++...+.+|..+++|+.|+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            3455677766665 45666777788888888765 476 67766667888888888888888766677788888888888


Q ss_pred             eecceeecccCccccccCCceEEEeeccccc
Q 037027          151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ  181 (205)
Q Consensus       151 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  181 (205)
                      +++|.+....+..+. ...+++|++++|++.
T Consensus        87 Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhc-cccccccccCCCccc
Confidence            888888744444443 446888888888775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.1e-11  Score=79.33  Aligned_cols=107  Identities=16%  Similarity=0.032  Sum_probs=85.7

Q ss_pred             CCcEEEeecCcceeecCccccCCCCccEEEecCc-ccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceee
Q 037027           48 SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGN-QLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYIS  126 (205)
Q Consensus        48 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~  126 (205)
                      ..+.++..++.+. ..+..+..+++|++|.+.++ .++...+..|..+++|+.|++++|+++ .++...|..+++|++|+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-Cccccccccccccccee
Confidence            4556777777766 45667888899999999766 477666777889999999999999998 77777778999999999


Q ss_pred             ecccccccCCCCCcCCCCcceEEEeecceee
Q 037027          127 LSQNMFHGGIPSALSKCTYLQILGLSFNDFS  157 (205)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  157 (205)
                      +++|+++...+..+. ..+|+.|++.+|++.
T Consensus        87 Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhc-cccccccccCCCccc
Confidence            999999854444454 447999999999874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=1.6e-13  Score=102.05  Aligned_cols=182  Identities=18%  Similarity=0.161  Sum_probs=100.0

Q ss_pred             ceEEEEEecCCccccc----CCCCCCCCCCCcEEEeecCcceeecCcc-------------ccCCCCccEEEecCccccc
Q 037027           23 HRVTVFNVSGLNLTGT----IPSQLGNLSSLQSLNLSFNRLSGSIPSA-------------TFITHTLKYVDLRGNQLSG   85 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~~   85 (205)
                      ++++.|++++|.+...    +...+...++|++|++.+|.+.......             ....+.|+.+.+.++.+..
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            3555666666554422    1122223455666666655543110000             1233456666666655442


Q ss_pred             CC----CccccCCCCccEEEcccccCCccc----CcccccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeec
Q 037027           86 AF----PSFIFNKSSLQDLDLSYNALSGEI----PANICSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSF  153 (205)
Q Consensus        86 ~~----~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~  153 (205)
                      ..    ...+.....|+++++.+|.+....    ........++|+.|++++|.++..    +...+..+++|+.|++++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence            11    112334567788888877765321    111224567788888888876532    234456677788888888


Q ss_pred             ceeecccCccc----c--ccCCceEEEeeccccccc----Cchhcc-CCCCCcEEeccCCcC
Q 037027          154 NDFSGAIPKEI----G--NVTKLKELYLVRNRLQGE----IPRELS-NLAELELMSLFDNEL  204 (205)
Q Consensus       154 ~~~~~~~~~~~----~--~~~~L~~l~l~~~~l~~~----~~~~l~-~~~~L~~l~l~~n~l  204 (205)
                      |.+.+.....+    .  ..+.|++|++++|.+.+.    +...+. +.+.|+.|++++|.+
T Consensus       253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            87754322222    1  235688888888887643    233332 567788888888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=2.6e-13  Score=93.03  Aligned_cols=113  Identities=24%  Similarity=0.326  Sum_probs=91.5

Q ss_pred             CCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCcccc
Q 037027           86 AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIG  165 (205)
Q Consensus        86 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~  165 (205)
                      ..+..+..+.+|++|++++|.+. .++. + ..+++|+.|++++|.++. ++.....+++|+.|++.+|.+...  ..+.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~~-l-~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KISS-L-SGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIE  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCCC-H-HHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Cccc-c-cCCccccChhhccccccc-cccccccccccccccccccccccc--cccc
Confidence            44566778999999999999997 6653 3 678999999999999974 454445556899999999998743  3467


Q ss_pred             ccCCceEEEeecccccccC-chhccCCCCCcEEeccCCcC
Q 037027          166 NVTKLKELYLVRNRLQGEI-PRELSNLAELELMSLFDNEL  204 (205)
Q Consensus       166 ~~~~L~~l~l~~~~l~~~~-~~~l~~~~~L~~l~l~~n~l  204 (205)
                      .+++|++|++++|++++.. ...+..+++|+.|++++|++
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            7899999999999998432 25788999999999999975

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.19  E-value=8.4e-13  Score=98.03  Aligned_cols=182  Identities=20%  Similarity=0.201  Sum_probs=93.1

Q ss_pred             ceEEEEEecCCcccc----cCCCCCCCCCCCcEEEeecCcceee----------cCccccCCCCccEEEecCcccccCC-
Q 037027           23 HRVTVFNVSGLNLTG----TIPSQLGNLSSLQSLNLSFNRLSGS----------IPSATFITHTLKYVDLRGNQLSGAF-   87 (205)
Q Consensus        23 ~~l~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----------~~~~~~~l~~L~~L~l~~~~~~~~~-   87 (205)
                      ..++.|+++++.+..    .+...+...++|+.+++.++.....          ....+...++|++|++++|.+.... 
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            356667777766532    1233445556666666665432210          1222344556666666666554321 


Q ss_pred             ---CccccCCCCccEEEcccccCC-------------------------------------cccCccc---ccCCCCcce
Q 037027           88 ---PSFIFNKSSLQDLDLSYNALS-------------------------------------GEIPANI---CSNLPFLEY  124 (205)
Q Consensus        88 ---~~~l~~l~~L~~L~l~~~~~~-------------------------------------~~~~~~~---~~~~~~L~~  124 (205)
                         ...+...++|++|++.+|.+.                                     ......+   ....+.++.
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence               112233455666666555432                                     1100000   123355666


Q ss_pred             eeecccccccC-----CCCCcCCCCcceEEEeecceeecc----cCccccccCCceEEEeecccccccC----chhccC-
Q 037027          125 ISLSQNMFHGG-----IPSALSKCTYLQILGLSFNDFSGA----IPKEIGNVTKLKELYLVRNRLQGEI----PRELSN-  190 (205)
Q Consensus       125 l~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~~~~----~~~l~~-  190 (205)
                      +++.+|.+...     +...+..+++|+.|++++|.+.+.    +...+..+++|++|++++|.+.+..    .+.+.. 
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~  270 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  270 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence            67766665431     223455566677777777765422    2234455667777777777766432    233332 


Q ss_pred             -CCCCcEEeccCCcC
Q 037027          191 -LAELELMSLFDNEL  204 (205)
Q Consensus       191 -~~~L~~l~l~~n~l  204 (205)
                       .+.|++|++++|.|
T Consensus       271 ~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         271 ENIGLQTLRLQYNEI  285 (344)
T ss_dssp             SSCCCCEEECCSSCC
T ss_pred             cCCCCCEEECCCCcC
Confidence             24577777777765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.07  E-value=4.9e-09  Score=77.07  Aligned_cols=73  Identities=29%  Similarity=0.417  Sum_probs=32.8

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS  103 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  103 (205)
                      +++.|++++++++ .+|+.+   .+|+.|++.+|.+.. ++.   -.+.|++|++.+|.+. ..|. +..+.+|+++++.
T Consensus        59 ~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~---lp~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          59 HLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSD---LPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             TCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCS---CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhh---hccccccccccccccc-cccc-hhhhccceeeccc
Confidence            4555566555554 334332   234444444444331 110   0123556666555554 2232 2345555555555


Q ss_pred             ccc
Q 037027          104 YNA  106 (205)
Q Consensus       104 ~~~  106 (205)
                      ++.
T Consensus       129 ~~~  131 (353)
T d1jl5a_         129 NNS  131 (353)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.86  E-value=2.9e-08  Score=72.86  Aligned_cols=95  Identities=27%  Similarity=0.463  Sum_probs=73.0

Q ss_pred             eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027           24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS  103 (205)
Q Consensus        24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  103 (205)
                      +++.|+++++.++ .+|+.   .++|+.|++++|.++ .++..   ..+|+.|++.++.++ .++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            5778999999987 56654   468999999999998 34443   468999999999887 33321   2469999999


Q ss_pred             cccCCcccCcccccCCCCcceeeecccccc
Q 037027          104 YNALSGEIPANICSNLPFLEYISLSQNMFH  133 (205)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  133 (205)
                      +|.+. .++. . ..+++|+.+++.++.+.
T Consensus       107 ~n~l~-~lp~-~-~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         107 NNQLE-KLPE-L-QNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             SSCCS-SCCC-C-TTCTTCCEEECCSSCCS
T ss_pred             ccccc-cccc-h-hhhccceeecccccccc
Confidence            99997 6664 3 56889999999888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.3e-10  Score=85.66  Aligned_cols=111  Identities=21%  Similarity=0.206  Sum_probs=59.2

Q ss_pred             CccEEEecCcccccCC-CccccCCCCccEEEcccccCCcccCcc---cccCCCCcceeeecccccccC----CCCCcC-C
Q 037027           72 TLKYVDLRGNQLSGAF-PSFIFNKSSLQDLDLSYNALSGEIPAN---ICSNLPFLEYISLSQNMFHGG----IPSALS-K  142 (205)
Q Consensus        72 ~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~----~~~~~~-~  142 (205)
                      +|++|+++.+.+++.. ...+..+.+++.|++.+|+++......   .+...++|+.|++++|.+++.    +.+.+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4667777777665321 222334566777777777665221111   114556677777777666431    111221 2


Q ss_pred             CCcceEEEeecceeecc----cCccccccCCceEEEeecccccc
Q 037027          143 CTYLQILGLSFNDFSGA----IPKEIGNVTKLKELYLVRNRLQG  182 (205)
Q Consensus       143 ~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~~  182 (205)
                      ..+|+.|++++|.+.+.    ++..+..+++|++|++++|.+.+
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            23566777777666432    22334456667777777666653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=7.5e-10  Score=84.26  Aligned_cols=181  Identities=19%  Similarity=0.185  Sum_probs=97.6

Q ss_pred             eEEEEEecCCcccc-----cCCCCCCCCCCCcEEEeecCcceee----cCccccCCCCccEEEecCcccccCCCc----c
Q 037027           24 RVTVFNVSGLNLTG-----TIPSQLGNLSSLQSLNLSFNRLSGS----IPSATFITHTLKYVDLRGNQLSGAFPS----F   90 (205)
Q Consensus        24 ~l~~l~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~----~   90 (205)
                      .++.+++.++.+..     ...........++.+++.+|.+...    ....+...+.++.+++.++.+......    .
T Consensus       227 ~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~  306 (460)
T d1z7xw1         227 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET  306 (460)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             cccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence            44555665554321     1122233445677777777665421    122234456677777777665421111    1


Q ss_pred             cc-CCCCccEEEcccccCCcccCcc---cccCCCCcceeeecccccccC----CCCCc-CCCCcceEEEeecceeecc--
Q 037027           91 IF-NKSSLQDLDLSYNALSGEIPAN---ICSNLPFLEYISLSQNMFHGG----IPSAL-SKCTYLQILGLSFNDFSGA--  159 (205)
Q Consensus        91 l~-~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~----~~~~~-~~~~~L~~l~l~~~~~~~~--  159 (205)
                      +. ....|+.+++..+.+.......   .....++|+.|++++|.+.+.    +++.+ ...+.|+.|++++|.+.+.  
T Consensus       307 l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~  386 (460)
T d1z7xw1         307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC  386 (460)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred             ccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHH
Confidence            11 2346777777777665322111   113445677888877776532    12222 2345677888888777542  


Q ss_pred             --cCccccccCCceEEEeecccccccCchhc----c-CCCCCcEEeccCCcC
Q 037027          160 --IPKEIGNVTKLKELYLVRNRLQGEIPREL----S-NLAELELMSLFDNEL  204 (205)
Q Consensus       160 --~~~~~~~~~~L~~l~l~~~~l~~~~~~~l----~-~~~~L~~l~l~~n~l  204 (205)
                        +...+..+++|++|++++|.+++.....+    . ....|+.+++.++.+
T Consensus       387 ~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         387 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             HHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence              22334556778888888887765433222    2 334677788777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6.9e-09  Score=68.30  Aligned_cols=82  Identities=27%  Similarity=0.243  Sum_probs=49.4

Q ss_pred             cCCCCcceeeecccccccCC--CCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCc-------hh
Q 037027          117 SNLPFLEYISLSQNMFHGGI--PSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIP-------RE  187 (205)
Q Consensus       117 ~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-------~~  187 (205)
                      ..++.|++|++++|+++...  +..+..+++|+.|++++|.+.+...........++++++.+|++.....       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            44667777777777776421  2334556777777777777664333233334567777777777764322       33


Q ss_pred             ccCCCCCcEEe
Q 037027          188 LSNLAELELMS  198 (205)
Q Consensus       188 l~~~~~L~~l~  198 (205)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            55677777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=7.5e-08  Score=63.18  Aligned_cols=40  Identities=28%  Similarity=0.236  Sum_probs=18.2

Q ss_pred             CCCCccEEEecCcccccCC--CccccCCCCccEEEcccccCC
Q 037027           69 ITHTLKYVDLRGNQLSGAF--PSFIFNKSSLQDLDLSYNALS  108 (205)
Q Consensus        69 ~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~  108 (205)
                      .++.|++|++++|.++...  +..+..+++|+.|++++|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            3445555555555554221  122333445555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.75  E-value=2.9e-06  Score=55.61  Aligned_cols=86  Identities=13%  Similarity=0.151  Sum_probs=40.3

Q ss_pred             CCCCccEEEecCc-cccc----CCCccccCCCCccEEEcccccCCcccCccc---ccCCCCcceeeecccccccC----C
Q 037027           69 ITHTLKYVDLRGN-QLSG----AFPSFIFNKSSLQDLDLSYNALSGEIPANI---CSNLPFLEYISLSQNMFHGG----I  136 (205)
Q Consensus        69 ~l~~L~~L~l~~~-~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~----~  136 (205)
                      ..+.|++|++.++ .+..    .+...+.....|++|++++|.+.+.....+   ....+.|+.|++++|.+.+.    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456677777653 2331    112233445566666666665542211111   12334556666666655431    1


Q ss_pred             CCCcCCCCcceEEEeecc
Q 037027          137 PSALSKCTYLQILGLSFN  154 (205)
Q Consensus       137 ~~~~~~~~~L~~l~l~~~  154 (205)
                      ..++...++|++|++.+|
T Consensus        93 ~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCC
Confidence            223444455555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.63  E-value=6.6e-06  Score=53.86  Aligned_cols=110  Identities=12%  Similarity=0.145  Sum_probs=77.0

Q ss_pred             CCCCccEEEcccc-cCCcccCccc---ccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeeccc----
Q 037027           93 NKSSLQDLDLSYN-ALSGEIPANI---CSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAI----  160 (205)
Q Consensus        93 ~l~~L~~L~l~~~-~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----  160 (205)
                      ..++|++|+++++ .+.......+   +...+.|+.|++++|.+.+.    +.+.+...+.|+.|++++|.+.+..    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578999999874 4543222211   24567899999999988742    2234556788999999999886432    


Q ss_pred             CccccccCCceEEEeecccccc-------cCchhccCCCCCcEEeccCC
Q 037027          161 PKEIGNVTKLKELYLVRNRLQG-------EIPRELSNLAELELMSLFDN  202 (205)
Q Consensus       161 ~~~~~~~~~L~~l~l~~~~l~~-------~~~~~l~~~~~L~~l~l~~n  202 (205)
                      ...+...+.|++|++.+|.+..       .+...+...++|+.++++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            2345667889999999886542       23455666789999998765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.26  E-value=1.9e-05  Score=51.44  Aligned_cols=40  Identities=10%  Similarity=0.088  Sum_probs=19.9

Q ss_pred             CCCCccEEEecC-ccccc----CCCccccCCCCccEEEcccccCC
Q 037027           69 ITHTLKYVDLRG-NQLSG----AFPSFIFNKSSLQDLDLSYNALS  108 (205)
Q Consensus        69 ~l~~L~~L~l~~-~~~~~----~~~~~l~~l~~L~~L~l~~~~~~  108 (205)
                      ..+.|++|++.+ +.++.    .+...+...++|++|++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            445666666665 22321    12222334555666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.30  E-value=0.00044  Score=44.71  Aligned_cols=112  Identities=16%  Similarity=0.157  Sum_probs=77.5

Q ss_pred             cCCCCccEEEccc-ccCCcccCccc---ccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeecc----
Q 037027           92 FNKSSLQDLDLSY-NALSGEIPANI---CSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGA----  159 (205)
Q Consensus        92 ~~l~~L~~L~l~~-~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----  159 (205)
                      ...+.|++|++.+ +.++......+   ....++|+.|++++|.+...    +.+.+...+.++.+++.+|.+.+.    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3568899999987 45643222222   14678899999999988642    334456678899999999987543    


Q ss_pred             cCccccccCCceEEEee--ccccccc----CchhccCCCCCcEEeccCCc
Q 037027          160 IPKEIGNVTKLKELYLV--RNRLQGE----IPRELSNLAELELMSLFDNE  203 (205)
Q Consensus       160 ~~~~~~~~~~L~~l~l~--~~~l~~~----~~~~l~~~~~L~~l~l~~n~  203 (205)
                      +...+...+.++.++|.  .|.+.+.    +.+.+...+.|+.|++..+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            23455667888887664  5567653    44666688999999998764