Citrus Sinensis ID: 037034

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVASGRR
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEccHHHHHHHHHccccccccccccEEEEcccccHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHccccccEEEEccccccccccccHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEccccEEEEEEcccccccccccccEEEEcccccHHHHHHHHHHHHccccHEEEEEcHHHHHHHHHHHHHHcccccEEEEEccccccccccHcHHHHHHHHHccHHHHHcccc
Coil and Loop (DISEMBL)
magraqiptkSSALIAMIADEDTVTGFLLAgvgnvdlrrktnyLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDsynkpipaileipskdhpydpahdsVLSRVKNLFSAESVASGRR
Flexible Loop (DISEMBL)
magraqiptksSALIAMIADEDTVTGFLLAgvgnvdlrrktnylivdskttvkAIEDAFkefttkediAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVASGRR
Low Complexity Region (SEG)
MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVASGRR
Disordered region (IsUnstruct)
************ALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEI********************************
Disordered Region (DISOPRED)
**************IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPS***********VLSRVKNLFSAESVA****
Disordered Region (DISEMBL)
*********KSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFS*********
Disordered Region (DISPRO)
*********KSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAES******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVASGRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q9ZQX4	128	V-type proton ATPase subu	yes	no	0.969	0.984	0.849	7e-60
Q55AH5	120	V-type proton ATPase subu	yes	no	0.861	0.933	0.589	1e-34
P50408	119	V-type proton ATPase subu	yes	no	0.907	0.991	0.512	2e-34
Q9D1K2	119	V-type proton ATPase subu	yes	no	0.907	0.991	0.512	2e-34
Q28029	119	V-type proton ATPase subu	yes	no	0.907	0.991	0.504	3e-34
Q16864	119	V-type proton ATPase subu	yes	no	0.907	0.991	0.504	3e-34
Q23680	121	Probable V-type proton AT	yes	no	0.846	0.909	0.572	8e-34
Q17029	127	V-type proton ATPase subu	yes	no	0.892	0.913	0.508	3e-31
Q1HQK8	127	V-type proton ATPase subu	N/A	no	0.892	0.913	0.491	5e-31
Q24583	124	V-type proton ATPase subu	yes	no	0.861	0.903	0.491	1e-30

>sp|Q9ZQX4|VATF_ARATH V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1

 Score =  228 bits (582), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 107/126 (84%), Positives = 120/126 (95%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAGRA IP ++SALIAMIADEDTV GFL+AGVGNVD+RRKTNYLIVDSKTTV+ IEDAFK
Sbjct: 1   MAGRATIPARNSALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFK 60

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           EF+ ++DIAI+L+SQY+ANMIRFLVDSYNKP+PAILEIPSKDHPYDPAHDSVLSRVK LF
Sbjct: 61  EFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SAESVA 126
           SAESV+
Sbjct: 121 SAESVS 126

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Arabidopsis thaliana (taxid: 3702)

>sp|Q55AH5|VATF_DICDI V-type proton ATPase subunit F OS=Dictyostelium discoideum GN=vatF PE=3 SV=1

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 88/112 (78%)

Query: 12  SALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIV 71
           +AL+A+I DED VTGFLLAGVG  D ++  N+L+VDSKT+   IE AFK FTT+ DIAI+
Sbjct: 9   TALVAVIGDEDVVTGFLLAGVGQKDKKKNENFLVVDSKTSQAKIETAFKSFTTRNDIAII 68

Query: 72  LISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 123
           +I+Q VA+ IR+L+D Y++ IP ILEIPSKDHPYDP  DSV+ +VK +  ++
Sbjct: 69  MITQKVADEIRYLIDEYHQVIPTILEIPSKDHPYDPKKDSVMLKVKKMTGSD 120

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Dictyostelium discoideum (taxid: 44689)

>sp|P50408|VATF_RAT V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 91/125 (72%), Gaps = 7/125 (5%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAGR +       LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F+
Sbjct: 1   MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR 53

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           +F  ++DI I+LI+QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R K +F
Sbjct: 54  QFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMF 113

Query: 121 SAESV 125
           +AE +
Sbjct: 114 TAEDL 118

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Rattus norvegicus (taxid: 10116)

>sp|Q9D1K2|VATF_MOUSE V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 91/125 (72%), Gaps = 7/125 (5%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAGR +       LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F+
Sbjct: 1   MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR 53

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           +F  ++DI I+LI+QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R K +F
Sbjct: 54  QFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMF 113

Query: 121 SAESV 125
           +AE +
Sbjct: 114 TAEDL 118

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|Q28029|VATF_BOVIN V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 91/125 (72%), Gaps = 7/125 (5%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAGR +       LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F+
Sbjct: 1   MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR 53

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           +F  ++DI I+LI+QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R + +F
Sbjct: 54  QFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGMF 113

Query: 121 SAESV 125
           +AE +
Sbjct: 114 TAEDL 118

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Bos taurus (taxid: 9913)

>sp|Q16864|VATF_HUMAN V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 91/125 (72%), Gaps = 7/125 (5%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAGR +       LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F+
Sbjct: 1   MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR 53

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           +F  ++DI I+LI+QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R + +F
Sbjct: 54  QFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMF 113

Query: 121 SAESV 125
           +AE +
Sbjct: 114 TAEDL 118

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

>sp|Q23680|VATF_CAEEL Probable V-type proton ATPase subunit F OS=Caenorhabditis elegans GN=vha-9 PE=3 SV=1

 Score =  142 bits (357), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 88/110 (80%)

Query: 14  LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
           ++A+I DEDTV GFLL GVG ++  RK NYLIVD +TTV+ IE+AF  F  ++DIAI+LI
Sbjct: 9   ILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDDIAIILI 68

Query: 74  SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 123
           +Q++A MIR+ VD++ + IPA+LEIPSK+ PYDP+ DS+L+R + LF+ E
Sbjct: 69  NQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRARGLFNPE 118

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Caenorhabditis elegans (taxid: 6239)

>sp|Q17029|VATF_ANOGA V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2 SV=2

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 81/116 (69%)

Query: 14  LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
           LI++I DEDT  GFLL GVG ++  R  N+++VD  T V  IED FK F  ++DI I+LI
Sbjct: 11  LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSEIEDCFKRFIKRDDIDIILI 70

Query: 74  SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVASGR 129
           +Q  A +IR ++DS+  P PA+LEIPSKDHPYD + DS+L R K +F+ E + + R
Sbjct: 71  NQNYAELIRHVIDSHTAPTPAVLEIPSKDHPYDASKDSILRRAKGMFNPEDMIANR 126

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Anopheles gambiae (taxid: 7165)

>sp|Q1HQK8|VATF_AEDAE V-type proton ATPase subunit F OS=Aedes aegypti GN=AAEL002464 PE=2 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 81/116 (69%)

Query: 14  LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
           LI++I DEDT  GFLL G+G ++  R  N+++VD  T V  IED FK F  ++DI I+LI
Sbjct: 11  LISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTAVSEIEDCFKRFIKRDDIDIILI 70

Query: 74  SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVASGR 129
           +Q  A MIR ++D++  P PA+LEIPSKDHPYD + DS+L R K +F+ + + + R
Sbjct: 71  NQNYAEMIRHVIDAHTSPTPAVLEIPSKDHPYDASKDSILRRAKGMFNPDDMVANR 126

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Aedes aegypti (taxid: 7159)

>sp|Q24583|VATF1_DROME V-type proton ATPase subunit F 1 OS=Drosophila melanogaster GN=Vha14-1 PE=1 SV=1

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 80/112 (71%)

Query: 14  LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
           LI++I DEDT  GFLL GVG ++  R  N+++VD  T V  +ED FK F  ++DI I+LI
Sbjct: 11  LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSELEDCFKRFLKRDDIDIILI 70

Query: 74  SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125
           +Q  A +IR ++D++  P+PA+LEIPSKDHPYD + DS+L R + +F+ E +
Sbjct: 71  NQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPEDL 122

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
225463325	130	PREDICTED: V-type proton ATPase subunit	1.0	1.0	0.961	1e-66
449466929	130	PREDICTED: V-type proton ATPase subunit	0.992	0.992	0.937	1e-64
154269266	130	vacuolar proton pump subunit F [Corchoru	0.992	0.992	0.937	9e-64
388502498	130	unknown [Lotus japonicus] gi|388516411|g	1.0	1.0	0.915	7e-63
351727941	130	uncharacterized protein LOC100305531 [Gl	1.0	1.0	0.9	2e-62
226531203	130	vacuolar ATP synthase subunit F [Zea may	1.0	1.0	0.892	6e-62
115449893	130	Os02g0824700 [Oryza sativa Japonica Grou	1.0	1.0	0.907	6e-62
242046860	130	hypothetical protein SORBIDRAFT_02g04238	1.0	1.0	0.892	7e-62
226506110	130	vacuolar ATP synthase subunit F [Zea may	1.0	1.0	0.884	2e-61
242063578	130	hypothetical protein SORBIDRAFT_04g03792	1.0	1.0	0.9	2e-61

>gi|225463325|ref|XP_002268061.1| PREDICTED: V-type proton ATPase subunit F [Vitis vinifera] gi|147766833|emb|CAN63147.1| hypothetical protein VITISV_029487 [Vitis vinifera] gi|296089563|emb|CBI39382.3| unnamed protein product [Vitis vinifera]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/130 (96%), Positives = 128/130 (98%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAGRAQIPTKSSALIAMIADEDT+TGFLLAGVGNVDLRRKTNYLIVDSKTTVK IEDAFK
Sbjct: 1   MAGRAQIPTKSSALIAMIADEDTITGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFK 60

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           EFTTKEDIAI+LISQYVANMIRFLVDSYNKP+PAILEIPSKDHPYDPAHDSVLSRVK LF
Sbjct: 61  EFTTKEDIAIILISQYVANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SAESVASGRR 130
           SAESVASGRR
Sbjct: 121 SAESVASGRR 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466929|ref|XP_004151178.1| PREDICTED: V-type proton ATPase subunit F-like [Cucumis sativus] gi|449515219|ref|XP_004164647.1| PREDICTED: V-type proton ATPase subunit F-like [Cucumis sativus]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/129 (93%), Positives = 126/129 (97%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAG+AQIPTK+SALI+MIADEDTV GFLLAGVGNVDLRRKTNYLIVDSKTTVK IEDAFK
Sbjct: 1   MAGKAQIPTKNSALISMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFK 60

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           EFTT+EDIAIV+ISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF
Sbjct: 61  EFTTREDIAIVMISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120

Query: 121 SAESVASGR 129
           S ESVASGR
Sbjct: 121 STESVASGR 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154269266|gb|ABS72193.1| vacuolar proton pump subunit F [Corchorus olitorius]

 Score =  247 bits (631), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 121/129 (93%), Positives = 124/129 (96%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAGRAQI T SSALIAMIADEDTVTGFL+AGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK
Sbjct: 1   MAGRAQIKTSSSALIAMIADEDTVTGFLMAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           EFTT+EDIAI+LISQYVANMIRFLVDSYN PIPAILEIPSKDHPYDPAHDSVLSRVK LF
Sbjct: 61  EFTTREDIAIILISQYVANMIRFLVDSYNNPIPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SAESVASGR 129
           S ESVASGR
Sbjct: 121 STESVASGR 129

Source: Corchorus olitorius

Species: Corchorus olitorius

Genus: Corchorus

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502498|gb|AFK39315.1| unknown [Lotus japonicus] gi|388516411|gb|AFK46267.1| unknown [Lotus japonicus]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 119/130 (91%), Positives = 124/130 (95%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MA +AQI T +SALIAMIADEDTV GFLLAGVGNVDLRRKTNYLIVDSKTTVK IEDAFK
Sbjct: 1   MANKAQIRTNNSALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFK 60

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           EFTT+EDIAIVLISQYVANMIRFLVDSYNKP+PAILEIPSKDHPYDPA DSVLSRVKNLF
Sbjct: 61  EFTTREDIAIVLISQYVANMIRFLVDSYNKPVPAILEIPSKDHPYDPAQDSVLSRVKNLF 120

Query: 121 SAESVASGRR 130
           S+ESVASGRR
Sbjct: 121 SSESVASGRR 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727941|ref|NP_001236666.1| uncharacterized protein LOC100305531 [Glycine max] gi|356525010|ref|XP_003531120.1| PREDICTED: V-type proton ATPase subunit F-like [Glycine max] gi|255625819|gb|ACU13254.1| unknown [Glycine max]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 117/130 (90%), Positives = 123/130 (94%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MA R QIPT +SALIAMIADEDTV GFLLAGVGNVD+RRKTNYLIVDSKTTVK IEDAFK
Sbjct: 1   MANRVQIPTNNSALIAMIADEDTVVGFLLAGVGNVDIRRKTNYLIVDSKTTVKQIEDAFK 60

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           EFTT+ED+AIVLISQYVANMIRFLVDSYNKP+PAILEIPSKDHPYDPAHDSVLSRVK LF
Sbjct: 61  EFTTREDVAIVLISQYVANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SAESVASGRR 130
           + ESVASGRR
Sbjct: 121 NTESVASGRR 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226531203|ref|NP_001149476.1| vacuolar ATP synthase subunit F [Zea mays] gi|195627436|gb|ACG35548.1| vacuolar ATP synthase subunit F [Zea mays] gi|414888044|tpg|DAA64058.1| TPA: vacuolar ATP synthase subunit F [Zea mays]

 Score =  241 bits (616), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 116/130 (89%), Positives = 125/130 (96%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAGRA IPT +SALIA+IADEDTVTGFL+AGVGNVDLR+KTNYL+VD+KTTVK IEDAFK
Sbjct: 1   MAGRANIPTNNSALIAIIADEDTVTGFLMAGVGNVDLRKKTNYLLVDNKTTVKQIEDAFK 60

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           EFTT+EDIAIVLISQY+ANMIRFLVDSYNKP+PAILEIPSKDHPYDPAHDSVLSRVK LF
Sbjct: 61  EFTTREDIAIVLISQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SAESVASGRR 130
           SAESVAS RR
Sbjct: 121 SAESVASDRR 130

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115449893|ref|NP_001048577.1| Os02g0824700 [Oryza sativa Japonica Group] gi|48717094|dbj|BAD22867.1| putative Vacuolar ATP synthase subunit F [Oryza sativa Japonica Group] gi|113538108|dbj|BAF10491.1| Os02g0824700 [Oryza sativa Japonica Group] gi|125547097|gb|EAY92919.1| hypothetical protein OsI_14722 [Oryza sativa Indica Group] gi|125589239|gb|EAZ29589.1| hypothetical protein OsJ_13663 [Oryza sativa Japonica Group] gi|218191851|gb|EEC74278.1| hypothetical protein OsI_09518 [Oryza sativa Indica Group] gi|222623946|gb|EEE58078.1| hypothetical protein OsJ_08944 [Oryza sativa Japonica Group]

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 118/130 (90%), Positives = 124/130 (95%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAGR  IPT SSALIA+IADEDTVTGFLLAGVGNVDLR+KTNYLIVD+KTTVK IEDAFK
Sbjct: 1   MAGRPSIPTNSSALIAIIADEDTVTGFLLAGVGNVDLRKKTNYLIVDNKTTVKQIEDAFK 60

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           EFTT+EDIAIVLISQYVANMIRFLVDSYN+P+PAILEIPSKDHPYDPAHDSVLSRVK LF
Sbjct: 61  EFTTREDIAIVLISQYVANMIRFLVDSYNRPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SAESVASGRR 130
           SAESVAS RR
Sbjct: 121 SAESVASDRR 130

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242046860|ref|XP_002461176.1| hypothetical protein SORBIDRAFT_02g042380 [Sorghum bicolor] gi|241924553|gb|EER97697.1| hypothetical protein SORBIDRAFT_02g042380 [Sorghum bicolor]

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 116/130 (89%), Positives = 125/130 (96%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAGRA IPT +SALIA+IADEDTVTGFL+AGVGNVDLR+KTNYL+VD+KTTVK IEDAFK
Sbjct: 1   MAGRASIPTNNSALIAIIADEDTVTGFLMAGVGNVDLRKKTNYLLVDNKTTVKQIEDAFK 60

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           EFTT+EDIAIVLISQY+ANMIRFLVDSYNKP+PAILEIPSKDHPYDPAHDSVLSRVK LF
Sbjct: 61  EFTTREDIAIVLISQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SAESVASGRR 130
           SAESVAS RR
Sbjct: 121 SAESVASDRR 130

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226506110|ref|NP_001149843.1| vacuolar ATP synthase subunit F [Zea mays] gi|195609336|gb|ACG26498.1| vacuolar ATP synthase subunit F [Zea mays] gi|195634989|gb|ACG36963.1| vacuolar ATP synthase subunit F [Zea mays]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/130 (88%), Positives = 124/130 (95%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAGR  IPT +SALIA+IADEDTVTGFL+AGVGNVDLR+KTNYL+VD+KTTVK IEDAFK
Sbjct: 1   MAGRTNIPTNNSALIAIIADEDTVTGFLMAGVGNVDLRKKTNYLLVDNKTTVKQIEDAFK 60

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           EFTT+EDIAIVLISQY+ANMIRFLVDSYNKP+PAILEIPSKDHPYDPAHDSVLSRVK LF
Sbjct: 61  EFTTREDIAIVLISQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SAESVASGRR 130
           SAESVAS RR
Sbjct: 121 SAESVASDRR 130

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242063578|ref|XP_002453078.1| hypothetical protein SORBIDRAFT_04g037920 [Sorghum bicolor] gi|241932909|gb|EES06054.1| hypothetical protein SORBIDRAFT_04g037920 [Sorghum bicolor]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/130 (90%), Positives = 123/130 (94%)

Query: 1   MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
           MAGRA IPT +SALIA+IADEDTVTGFLLAGVGNVDLR+KTNYLIVD+KTTVK IEDAFK
Sbjct: 1   MAGRANIPTNNSALIAIIADEDTVTGFLLAGVGNVDLRKKTNYLIVDNKTTVKQIEDAFK 60

Query: 61  EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
           EFT +EDIAIVLISQYVANMIRFLVD YNKP+PAILEIPSKDHPYDPAHDSVLSRVK LF
Sbjct: 61  EFTAREDIAIVLISQYVANMIRFLVDGYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SAESVASGRR 130
           SAESVAS RR
Sbjct: 121 SAESVASDRR 130

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2132343	128	AT4G02620 [Arabidopsis thalian	0.969	0.984	0.849	5.5e-54
DICTYBASE|DDB_G0271882	120	vatF "vacuolar ATPase subunit	0.884	0.958	0.584	3.7e-32
UNIPROTKB|F1SMN6	119	ATP6V1F "V-type proton ATPase	0.861	0.941	0.544	1.3e-31
MGI|MGI:1913394	119	Atp6v1f "ATPase, H+ transporti	0.861	0.941	0.535	2.6e-31
RGD|621552	119	Atp6v1f "ATPase, H transportin	0.861	0.941	0.535	2.6e-31
WB|WBGene00006918	121	vha-9 [Caenorhabditis elegans	0.846	0.909	0.572	2.6e-31
UNIPROTKB|Q28029	119	ATP6V1F "V-type proton ATPase	0.861	0.941	0.526	5.4e-31
UNIPROTKB|Q16864	119	ATP6V1F "V-type proton ATPase	0.861	0.941	0.526	6.9e-31
UNIPROTKB|E2RN91	119	ATP6V1F "V-type proton ATPase	0.861	0.941	0.517	1.4e-30
ZFIN|ZDB-GENE-040718-259	119	atp6v1f "ATPase, H+ transporti	0.846	0.924	0.545	3.8e-30

TAIR|locus:2132343 AT4G02620 [Arabidopsis thaliana (taxid:3702)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 107/126 (84%), Positives = 120/126 (95%)

Query:     1 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
             MAGRA IP ++SALIAMIADEDTV GFL+AGVGNVD+RRKTNYLIVDSKTTV+ IEDAFK
Sbjct:     1 MAGRATIPARNSALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFK 60

Query:    61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
             EF+ ++DIAI+L+SQY+ANMIRFLVDSYNKP+PAILEIPSKDHPYDPAHDSVLSRVK LF
Sbjct:    61 EFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query:   121 SAESVA 126
             SAESV+
Sbjct:   121 SAESVS 126

GO:0005634 "nucleus" evidence=ISM

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

DICTYBASE|DDB_G0271882 vatF "vacuolar ATPase subunit F" [Dictyostelium discoideum (taxid:44689)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 69/118 (58%), Positives = 91/118 (77%)

Query:     9 TKS---SALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTK 65
             TKS   +AL+A+I DED VTGFLLAGVG  D ++  N+L+VDSKT+   IE AFK FTT+
Sbjct:     3 TKSLSETALVAVIGDEDVVTGFLLAGVGQKDKKKNENFLVVDSKTSQAKIETAFKSFTTR 62

Query:    66 EDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 123
              DIAI++I+Q VA+ IR+L+D Y++ IP ILEIPSKDHPYDP  DSV+ +VK +  ++
Sbjct:    63 NDIAIIMITQKVADEIRYLIDEYHQVIPTILEIPSKDHPYDPKKDSVMLKVKKMTGSD 120

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1SMN6 ATP6V1F "V-type proton ATPase subunit F" [Sus scrofa (taxid:9823)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 61/112 (54%), Positives = 86/112 (76%)

Query:    14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
             LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  +EDI I+LI
Sbjct:     7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNREDIGIILI 66

Query:    74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125
             +QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R K +F+AE +
Sbjct:    67 NQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

MGI|MGI:1913394 Atp6v1f "ATPase, H+ transporting, lysosomal V1 subunit F" [Mus musculus (taxid:10090)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 60/112 (53%), Positives = 86/112 (76%)

Query:    14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
             LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI
Sbjct:     7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILI 66

Query:    74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125
             +QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R K +F+AE +
Sbjct:    67 NQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISO

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0042625 "ATPase activity, coupled to transmembrane movement of ions" evidence=ISO

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

RGD|621552 Atp6v1f "ATPase, H transporting, lysosomal V1 subunit F" [Rattus norvegicus (taxid:10116)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 60/112 (53%), Positives = 86/112 (76%)

Query:    14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
             LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI
Sbjct:     7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILI 66

Query:    74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125
             +QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R K +F+AE +
Sbjct:    67 NQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISO

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0042625 "ATPase activity, coupled to transmembrane movement of ions" evidence=IDA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

WB|WBGene00006918 vha-9 [Caenorhabditis elegans (taxid:6239)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 63/110 (57%), Positives = 88/110 (80%)

Query:    14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
             ++A+I DEDTV GFLL GVG ++  RK NYLIVD +TTV+ IE+AF  F  ++DIAI+LI
Sbjct:     9 ILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDDIAIILI 68

Query:    74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 123
             +Q++A MIR+ VD++ + IPA+LEIPSK+ PYDP+ DS+L+R + LF+ E
Sbjct:    69 NQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRARGLFNPE 118

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

UNIPROTKB|Q28029 ATP6V1F "V-type proton ATPase subunit F" [Bos taurus (taxid:9913)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 59/112 (52%), Positives = 86/112 (76%)

Query:    14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
             LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI
Sbjct:     7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILI 66

Query:    74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125
             +QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R + +F+AE +
Sbjct:    67 NQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|Q16864 ATP6V1F "V-type proton ATPase subunit F" [Homo sapiens (taxid:9606)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 59/112 (52%), Positives = 86/112 (76%)

Query:    14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
             LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI
Sbjct:     7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILI 66

Query:    74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125
             +QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R + +F+AE +
Sbjct:    67 NQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IDA

GO:0015992 "proton transport" evidence=NAS

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=NAS

GO:0016469 "proton-transporting two-sector ATPase complex" evidence=NAS

GO:0042624 "ATPase activity, uncoupled" evidence=NAS

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

UNIPROTKB|E2RN91 ATP6V1F "V-type proton ATPase subunit F" [Canis lupus familiaris (taxid:9615)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 58/112 (51%), Positives = 85/112 (75%)

Query:    14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
             LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI
Sbjct:     7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILI 66

Query:    74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125
             +QY+A M+R  +D++ + IPA+LEIPSK+HPYD   DS+L R + +F+AE +
Sbjct:    67 NQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDATKDSILRRARGMFTAEDL 118

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

ZFIN|ZDB-GENE-040718-259 atp6v1f "ATPase, H+ transporting, V1 subunit F" [Danio rerio (taxid:7955)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 60/110 (54%), Positives = 84/110 (76%)

Query:    14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
             LIA+I DEDT TGFLL G+G ++  RK N+L+V+ +T+V  IE+ FK F  + DI I+LI
Sbjct:     7 LIAVIGDEDTCTGFLLGGIGELNKNRKPNFLVVEKETSVTEIEETFKSFLARNDIGIILI 66

Query:    74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 123
             +Q++A MIR  +D++ + IPA+LEIPSK+HPYD + DS+L R K +FSAE
Sbjct:    67 NQFIAEMIRHAIDAHMQSIPAVLEIPSKEHPYDASKDSILRRAKGMFSAE 116

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0015992 "proton transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P39111	VATF_YEAST	No assigned EC number	0.5495	0.8307	0.9152	yes	no
Q9I8H3	VATF_XENLA	No assigned EC number	0.5045	0.8384	0.9909	N/A	no
Q9Y756	VATF_NEUCR	No assigned EC number	0.5166	0.9	0.9435	N/A	no
Q55AH5	VATF_DICDI	No assigned EC number	0.5892	0.8615	0.9333	yes	no
A7TMI5	VATF_VANPO	No assigned EC number	0.5178	0.8384	0.9159	N/A	no
A1DH48	VATF_NEOFI	No assigned EC number	0.5476	0.9076	0.9516	N/A	no
Q9D1K2	VATF_MOUSE	No assigned EC number	0.512	0.9076	0.9915	yes	no
Q23680	VATF_CAEEL	No assigned EC number	0.5727	0.8461	0.9090	yes	no
Q28029	VATF_BOVIN	No assigned EC number	0.504	0.9076	0.9915	yes	no
Q24583	VATF1_DROME	No assigned EC number	0.4910	0.8615	0.9032	yes	no
A6RRW0	VATF_BOTFB	No assigned EC number	0.5478	0.8615	0.9032	N/A	no
Q9ZQX4	VATF_ARATH	No assigned EC number	0.8492	0.9692	0.9843	yes	no
O43046	VATF_SCHPO	No assigned EC number	0.4864	0.8461	0.9166	yes	no
Q16864	VATF_HUMAN	No assigned EC number	0.504	0.9076	0.9915	yes	no
O44091	VATF1_DROPS	No assigned EC number	0.4910	0.8615	0.9032	yes	no
Q17029	VATF_ANOGA	No assigned EC number	0.5086	0.8923	0.9133	yes	no
P50408	VATF_RAT	No assigned EC number	0.512	0.9076	0.9915	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
TIGR01101	115	TIGR01101, V_ATP_synt_F, vacuolar ATP synthase F s	4e-50
pfam01990	92	pfam01990, ATP-synt_F, ATP synthase (F/14-kDa) sub	1e-31
COG1436	104	COG1436, NtpG, Archaeal/vacuolar-type H+-ATPase su	5e-16
PRK03957	100	PRK03957, PRK03957, V-type ATP synthase subunit F;	5e-10
PRK01395	104	PRK01395, PRK01395, V-type ATP synthase subunit F;	8e-06
PRK02228	100	PRK02228, PRK02228, V-type ATP synthase subunit F;	0.003

>gnl|CDD|130171 TIGR01101, V_ATP_synt_F, vacuolar ATP synthase F subunit

 Score =  154 bits (392), Expect = 4e-50
 Identities = 60/109 (55%), Positives = 81/109 (74%)

Query: 14  LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
           LIA+I DEDTV GFLL G+G ++  R  N+L+VD  TTV  IED F  F  ++DIAI+LI
Sbjct: 7   LIAVIGDEDTVVGFLLGGIGEINKNRHPNFLVVDKNTTVSEIEDCFNRFLKRDDIAIILI 66

Query: 74  SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSA 122
           +Q++A MIR  VD++ + IPA+LEIPSKDHPYD + DS+L R + +F+ 
Sbjct: 67  NQHIAEMIRHAVDAHTRSIPAVLEIPSKDHPYDASKDSILRRARGMFNP 115

This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit [Transport and binding proteins, Cations and iron carrying compounds]. Length = 115

>gnl|CDD|216832 pfam01990, ATP-synt_F, ATP synthase (F/14-kDa) subunit

 Score =  107 bits (270), Expect = 1e-31
 Identities = 48/103 (46%), Positives = 62/103 (60%), Gaps = 12/103 (11%)

Query: 15  IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
           IA+I DEDTVTGF LAG+G V               + +  E+AF+E   +EDI I+LI+
Sbjct: 1   IAVIGDEDTVTGFRLAGIGVVY------------VVSPEEAEEAFEELLEREDIGIILIT 48

Query: 75  QYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVK 117
           + +A  IR  +D Y   +PAILEIPSKD PY P  DSV   V+
Sbjct: 49  EDIAEEIRETIDRYESVLPAILEIPSKDGPYGPGKDSVRELVR 91

This family includes 14-kDa subunit from vATPases, which is in the peripheral catalytic part of the complex. The family also includes archaebacterial ATP synthase subunit F. Length = 92

>gnl|CDD|224353 COG1436, NtpG, Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]

 Score = 68.1 bits (167), Expect = 5e-16
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 14/105 (13%)

Query: 15  IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
           IA+I D DTVTGF LAGV  V       Y+  D +  ++A          ++D+ I+LI+
Sbjct: 5   IAVIGDRDTVTGFRLAGVRVV-------YVADDEEDELRAALRVL----AEDDVGIILIT 53

Query: 75  QYVANMIRFLVDSYN--KPIPAILEIPSK-DHPYDPAHDSVLSRV 116
           + +A  IR  +        +PAI+EIPS      +P  + +   V
Sbjct: 54  EDLAEKIREEIRRIIRSSVLPAIVEIPSPGKEEEEPLRELIRRAV 98

Length = 104

>gnl|CDD|179685 PRK03957, PRK03957, V-type ATP synthase subunit F; Provisional

 Score = 52.3 bits (126), Expect = 5e-10
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 14/104 (13%)

Query: 15  IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
           IA++ D DTVTGF LAG+  V       Y + + +    AI    KE    ++I I++I+
Sbjct: 3   IAVVGDRDTVTGFRLAGLTEV-------YEVKNPEEAKNAI----KELVENDEIGIIIIT 51

Query: 75  QYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKN 118
           + +A  IR   D  +  +P I+EIP K    +  +D V   V+ 
Sbjct: 52  ERIAEEIR---DLISVALPIIVEIPDKSGSIERENDPVKELVRR 92

Length = 100

>gnl|CDD|179293 PRK01395, PRK01395, V-type ATP synthase subunit F; Provisional

 Score = 41.5 bits (98), Expect = 8e-06
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 14/87 (16%)

Query: 15  IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
           I ++ D+D++  F   G+          + ++D +  +  +          ED  I+ I+
Sbjct: 6   IGVVGDKDSILPFKALGI--------DVFPVIDEQEAINTLRK-----LAMEDYGIIYIT 52

Query: 75  QYVANMIRFLVDSYN-KPIPAILEIPS 100
           + +A  I   ++ Y+ + +PAI+ IPS
Sbjct: 53  EQIAADIPETIERYDNQVLPAIILIPS 79

Length = 104

>gnl|CDD|179387 PRK02228, PRK02228, V-type ATP synthase subunit F; Provisional

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 11/59 (18%)

Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
          IA+I   +  TGF LAG+      RK  Y + D +   +A+E+  ++    +D+ I+++
Sbjct: 3  IAVIGSPEFTTGFRLAGI------RKV-YEVPDDEKLDEAVEEVLED----DDVGILVM 50

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
TIGR01101	115	V_ATP_synt_F vacuolar ATP synthase F subunit. This	100.0
KOG3432	121	consensus Vacuolar H+-ATPase V1 sector, subunit F	100.0
PRK03957	100	V-type ATP synthase subunit F; Provisional	99.97
PRK01395	104	V-type ATP synthase subunit F; Provisional	99.97
PRK02228	100	V-type ATP synthase subunit F; Provisional	99.97
PRK01189	104	V-type ATP synthase subunit F; Provisional	99.96
PF01990	95	ATP-synt_F: ATP synthase (F/14-kDa) subunit; Inter	99.94
COG1436	104	NtpG Archaeal/vacuolar-type H+-ATPase subunit F [E	99.94
COG4075	110	Uncharacterized conserved protein, homolog of nitr	93.55
PF10126	110	Nit_Regul_Hom: Uncharacterized protein, homolog of	89.17
PLN00124	422	succinyl-CoA ligase [GDP-forming] subunit beta; Pr	82.46

>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit

Probab=100.00  E-value=4.6e-35  Score=211.47  Aligned_cols=113  Identities=53%  Similarity=0.927  Sum_probs=108.3

Q ss_pred             CCCCcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhh
Q 037034            9 TKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSY   88 (130)
Q Consensus         9 ~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~   88 (130)
                      ...+.+||||||+||++||+||||+.+..++++||++++++|+.+|++++|+++++++|||||+|||++|+.+++.|++|
T Consensus         2 ~~~~~~IaVIGD~Dtv~GF~LaGi~~~~~~~~~nf~~v~~~t~~eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~   81 (115)
T TIGR01101         2 AEKGKLIAVIGDEDTVVGFLLGGIGEINKNRHPNFLVVDKNTTVSEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAH   81 (115)
T ss_pred             CCCCcEEEEEecHHHHHHHHHhCCCccccccccceeeecCCCCHHHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhc
Confidence            45678999999999999999999999988888999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEcCCCCCCCChhhhHHHHHHHHhcC
Q 037034           89 NKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFS  121 (130)
Q Consensus        89 ~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiG  121 (130)
                      ++..|+|++|||+.++|++++|+|+++|++++|
T Consensus        82 ~~~~PaIieIP~k~~~y~~~~d~i~~~~~~~~~  114 (115)
T TIGR01101        82 TRSIPAVLEIPSKDHPYDASKDSILRRARGMFN  114 (115)
T ss_pred             CCcCCEEEEECCCCCCCCCcccHHHHHHHHHcC
Confidence            999999999999999999999999999999987

This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit

>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]

Probab=100.00  E-value=2e-35  Score=210.96  Aligned_cols=115  Identities=61%  Similarity=0.989  Sum_probs=111.6

Q ss_pred             CCCCCcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHh
Q 037034            8 PTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDS   87 (130)
Q Consensus         8 ~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~   87 (130)
                      +..+++.||||||+||++||+|+|++.++.++++||+++++.|+.++++.+|+++++|+|++||+|++.+|+++|+.|+.
T Consensus         3 ~a~~~~liavIgDEDT~tGfLlaGvg~v~~~r~~Nf~vv~~~Tt~~eiedaF~~f~~RdDIaIiLInq~~Ae~iR~~vD~   82 (121)
T KOG3432|consen    3 SADKRTLIAVIGDEDTVTGFLLAGVGEVNENREPNFLVVDSKTTVEEIEDAFKSFTARDDIAIILINQFIAEMIRDRVDA   82 (121)
T ss_pred             ccccCcEEEEeccccceeeeeeecccccccCCCCCEEEEeccCCHHHHHHHHHhhccccCeEEEEEhHHHHHHHHHHHHh
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCcEEEEcCCCCCCCChhhhHHHHHHHHhcCC
Q 037034           88 YNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSA  122 (130)
Q Consensus        88 ~~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGv  122 (130)
                      |++..|+|++||||+.||++++|+|.+++++.+|-
T Consensus        83 h~~~vPAvLeIpSKdhPYd~~kDSiL~R~r~~f~~  117 (121)
T KOG3432|consen   83 HTQAVPAVLEIPSKDHPYDPSKDSILRRARGLFGP  117 (121)
T ss_pred             ccccCCeeEEecCCCCCCCchHHHHHHHHHhccCh
Confidence            99999999999999999999999999999999885

>PRK03957 V-type ATP synthase subunit F; Provisional

Probab=99.97  E-value=1.1e-31  Score=189.10  Aligned_cols=99  Identities=34%  Similarity=0.572  Sum_probs=91.6

Q ss_pred             cEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhCCCC
Q 037034           13 ALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPI   92 (130)
Q Consensus        13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~~~~   92 (130)
                      +|||||||+||++||||+|++++       |++.++    +|++++|++++++++||||++||++++.+++.++   +..
T Consensus         1 mkIaVIgD~dtv~GFrLaGi~~~-------~~v~~~----ee~~~~l~~l~~~~d~gII~ite~~~~~i~~~i~---~~~   66 (100)
T PRK03957          1 MKIAVVGDRDTVTGFRLAGLTEV-------YEVKNP----EEAKNAIKELVENDEIGIIIITERIAEEIRDLIS---VAL   66 (100)
T ss_pred             CEEEEEeCHHHHHHHHHcCCCce-------EEeCCH----HHHHHHHHHHhhCCCeEEEEEcHHHHHHHHHHHh---cCC
Confidence            48999999999999999999754       665444    9999999999999999999999999999999998   778


Q ss_pred             cEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcc
Q 037034           93 PAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV  125 (130)
Q Consensus        93 P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~  125 (130)
                      |+|++||+++|+++.++++|+++|+||+|+|||
T Consensus        67 P~Ii~IP~~~g~~~~~~~~i~~~v~raiG~dI~   99 (100)
T PRK03957         67 PIIVEIPDKSGSIERENDPVKELVRRAIGVEMK   99 (100)
T ss_pred             CEEEEECCCCCCCccchHHHHHHHHHHhCcccc
Confidence            999999999999999889999999999999997

>PRK01395 V-type ATP synthase subunit F; Provisional

Probab=99.97  E-value=2e-31  Score=189.28  Aligned_cols=100  Identities=20%  Similarity=0.405  Sum_probs=92.5

Q ss_pred             cEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhC-CC
Q 037034           13 ALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYN-KP   91 (130)
Q Consensus        13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~-~~   91 (130)
                      +|||||||+||++||||+|+++        |+++++    ++++++++++. ++|||||++||++++.+++.+++|+ +.
T Consensus         4 ~kIaVIGD~dtv~GFrLaGi~~--------~~v~~~----ee~~~~i~~l~-~~d~gII~Ite~~a~~i~~~i~~~~~~~   70 (104)
T PRK01395          4 YKIGVVGDKDSILPFKALGIDV--------FPVIDE----QEAINTLRKLA-MEDYGIIYITEQIAADIPETIERYDNQV   70 (104)
T ss_pred             eeEEEEECHHHHHHHHHcCCee--------EEecCh----HHHHHHHHHHh-cCCcEEEEEcHHHHHHhHHHHHHhcCCC
Confidence            7999999999999999999973        788776    99999999876 8999999999999999999999996 68


Q ss_pred             CcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcc
Q 037034           92 IPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV  125 (130)
Q Consensus        92 ~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~  125 (130)
                      .|+|++|||++|+.+.+.++|+++|+||||+||+
T Consensus        71 ~P~Il~IP~~~g~~~~g~~~i~~~v~kAIG~~i~  104 (104)
T PRK01395         71 LPAIILIPSNQGSLGIGLSRIQDNVEKAVGQNIL  104 (104)
T ss_pred             CCEEEEeCCCCCCccccHHHHHHHHHHHhCcccC
Confidence            9999999999998876688999999999999985

>PRK02228 V-type ATP synthase subunit F; Provisional

Probab=99.97  E-value=4.3e-30  Score=180.96  Aligned_cols=98  Identities=18%  Similarity=0.325  Sum_probs=87.7

Q ss_pred             cEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHh-h-CC
Q 037034           13 ALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDS-Y-NK   90 (130)
Q Consensus        13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~-~-~~   90 (130)
                      +|||||||+||++||||+|++++       |++.+    ++|++++|+++++++|||||++||++++.+.+.+++ + ++
T Consensus         1 mkIaVIGD~dtv~GFrLaGi~~~-------~~~~~----~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~   69 (100)
T PRK02228          1 MEIAVIGSPEFTTGFRLAGIRKV-------YEVPD----DEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEES   69 (100)
T ss_pred             CEEEEEeCHHHHHHHHHcCCceE-------EeeCC----HHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcC
Confidence            58999999999999999999864       55544    389999999999999999999999999999999998 4 48


Q ss_pred             CCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCccc
Q 037034           91 PIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVA  126 (130)
Q Consensus        91 ~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~~  126 (130)
                      ..|+|++||+..|+     ++|+++|+||||+|||-
T Consensus        70 ~~P~ii~IP~~~~~-----~~i~~~v~raIG~di~~  100 (100)
T PRK02228         70 VEPTVVTLGGGGGS-----GGLREKIKRAIGVDLWK  100 (100)
T ss_pred             CCCEEEEECCCccc-----hHHHHHHHHHhCccccC
Confidence            99999999986654     78999999999999983

>PRK01189 V-type ATP synthase subunit F; Provisional

Probab=99.96  E-value=1.1e-28  Score=175.30  Aligned_cols=97  Identities=19%  Similarity=0.321  Sum_probs=82.7

Q ss_pred             cEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHH-HHHHhhC-C
Q 037034           13 ALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIR-FLVDSYN-K   90 (130)
Q Consensus        13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~-~~I~~~~-~   90 (130)
                      +|||||||+||++||||+|++++       |++.++    +++++.++ .+++++||||++||.+++.+. +++++|+ +
T Consensus         3 ~kIaVvGd~DtilGFrlaGi~~v-------~~~~~~----e~~~~~~~-~l~~~~~gII~iTE~~a~~i~~~~i~~~~~~   70 (104)
T PRK01189          3 SCITVIGERDVVLGFRLLGIGDT-------IEAEGK----DLVKKFLE-IFNNPKCKYIFVSESTKNMFDKNTLRSLESS   70 (104)
T ss_pred             ceEEEEcCHHHHHHHHHcCCceE-------EEcCCH----HHHHHHHH-HHhcCCeEEEEEEHHHHhhCCHHHHHHHhcc
Confidence            78999999999999999999876       776553    77755555 667999999999999999999 7999996 8


Q ss_pred             CCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCc
Q 037034           91 PIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAES  124 (130)
Q Consensus        91 ~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi  124 (130)
                      ..|+||+||.+ |..+  +++|+++|++|||+|+
T Consensus        71 ~~P~II~Ipip-g~~~--~~~i~~~ik~aiGvd~  101 (104)
T PRK01189         71 SKPLVVFIPLP-GISE--EESIEEMAKRILGIDI  101 (104)
T ss_pred             CCCeEEEEeCC-CCcc--chhHHHHHHHHhcccc
Confidence            99999987776 3332  5799999999999998

>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.94  E-value=1.9e-26  Score=159.98  Aligned_cols=93  Identities=41%  Similarity=0.613  Sum_probs=84.7

Q ss_pred             EEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhh--CCCC
Q 037034           15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSY--NKPI   92 (130)
Q Consensus        15 IaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~--~~~~   92 (130)
                      ||||||+|+++||||+|+++        |++.   +++++++++|+++++++++|||++|+++++.+++.++++  ++..
T Consensus         1 IavIGd~~~v~gFrLaGv~~--------~~~~---~~~ee~~~~l~~l~~~~~~gIIii~e~~~~~~~~~l~~~~~~~~~   69 (95)
T PF01990_consen    1 IAVIGDRDTVLGFRLAGVEG--------VYVN---TDPEEAEEALKELLKDEDVGIIIITEDLAEKIRDELDEYREESSL   69 (95)
T ss_dssp             EEEEE-HHHHHHHHHTTSEE--------EEES---HSHHHHHHHHHHHHHHTTEEEEEEEHHHHTTHHHHHHHHHHTSSS
T ss_pred             CEEEeCHHHHHHHHHcCCCC--------ccCC---CCHHHHHHHHHHHhcCCCccEEEeeHHHHHHHHHHHHHHHhccCC
Confidence            79999999999999999996        4564   124999999999999999999999999999999999999  5899


Q ss_pred             cEEEEcCCCCCCCChhhhHHHHHHHH
Q 037034           93 PAILEIPSKDHPYDPAHDSVLSRVKN  118 (130)
Q Consensus        93 P~Iv~IPs~~g~~~~~~d~i~~~V~~  118 (130)
                      |+|++||+++++++.+.++|+++|+|
T Consensus        70 P~iv~IP~~~~~~~~~~~~i~~~v~r   95 (95)
T PF01990_consen   70 PLIVEIPSKEGSMGREKDSIRELVKR   95 (95)
T ss_dssp             SEEEEESTTCCCTSSCCHHHHHHHHH
T ss_pred             ceEEEcCCCCCCCCcchHHHHHHhcC
Confidence            99999999999988889999999986

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.

>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]

Probab=99.94  E-value=1.9e-26  Score=164.01  Aligned_cols=99  Identities=32%  Similarity=0.499  Sum_probs=85.2

Q ss_pred             CcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHH-HHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhh--
Q 037034           12 SALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVK-AIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSY--   88 (130)
Q Consensus        12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~e-e~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~--   88 (130)
                      .++||||||+||++||+|+|++++       |++.++    + ++.++++.+.+ ++||||+|||++++++++.++++  
T Consensus         2 ~~~I~VIGd~dtvtGFrLaGv~~~-------~v~~~~----~~~~~~~~~~l~~-~~~~iIiite~~a~~i~~~i~~~~~   69 (104)
T COG1436           2 MMKIAVIGDRDTVTGFRLAGVRVV-------YVADDE----EDELRAALRVLAE-DDVGIILITEDLAEKIREEIRRIIR   69 (104)
T ss_pred             ceEEEEEEccchhhceeeecceeE-------EEecCh----hHHHHHHHHhhcc-CCceEEEEeHHHHhhhHHHHHHHhh
Confidence            479999999999999999999865       545544    4 68888888874 59999999999999999999998  


Q ss_pred             CCCCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcc
Q 037034           89 NKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV  125 (130)
Q Consensus        89 ~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~  125 (130)
                      .+..|+|++|||++. .  +.+.++++|+|+||+++|
T Consensus        70 ~~~~P~iv~IPs~~~-~--~~~~~~~~I~k~vG~~i~  103 (104)
T COG1436          70 SSVLPAIVEIPSPGK-E--EEEPLRELIRRAVGVDIG  103 (104)
T ss_pred             ccCccEEEEeCCCCC-C--ccchHHHHHHHHHhhhhc
Confidence            488999999999722 2  357899999999999987

>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]

Probab=93.55  E-value=0.12  Score=36.87  Aligned_cols=71  Identities=20%  Similarity=0.331  Sum_probs=43.2

Q ss_pred             HHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEE---EehHHHHHHHHHHHh-hCCCCcEEEEcC
Q 037034           24 VTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVL---ISQYVANMIRFLVDS-YNKPIPAILEIP   99 (130)
Q Consensus        24 v~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~---Ite~~a~~i~~~I~~-~~~~~P~Iv~IP   99 (130)
                      +|||-|.--.|+++.+-.||...+   ++|.+-++++++..+   ++++   +.|..++++.+.+.+ +.+..=+|++||
T Consensus        28 iTGFfl~eYrGvsPd~wkgf~~~E---DpE~aik~i~D~s~~---AVlI~tVV~Ee~vekie~~~~Ekla~eryTIi~ip  101 (110)
T COG4075          28 ITGFFLHEYRGVSPDKWKGFSKEE---DPESAIKAIRDLSDK---AVLIGTVVKEEKVEKIEELLKEKLANERYTIIEIP  101 (110)
T ss_pred             cceEEEEEecCcChhHhcCccccc---CHHHHHHHHHHhhhc---eEEEEEecCHHHHHHHHHHHHHHhcCCceEEEEee
Confidence            455555544444443333454432   257777777777532   4444   458888888888876 345556889888


Q ss_pred             C
Q 037034          100 S  100 (130)
Q Consensus       100 s  100 (130)
                      =
T Consensus       102 I  102 (110)
T COG4075         102 I  102 (110)
T ss_pred             e
Confidence            5

>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins

Probab=89.17  E-value=0.76  Score=33.16  Aligned_cols=46  Identities=17%  Similarity=0.304  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHhcCCCeeEE---EEehHHHHHHHHHHHh-hCCCCcEEEEcCC
Q 037034           52 VKAIEDAFKEFTTKEDIAIV---LISQYVANMIRFLVDS-YNKPIPAILEIPS  100 (130)
Q Consensus        52 ~ee~~~~~~~l~~~~digII---~Ite~~a~~i~~~I~~-~~~~~P~Iv~IPs  100 (130)
                      ++.+-++++++..+   ||+   +++++.++.|.+.+.+ +++..=+|++||=
T Consensus        53 pe~ai~~I~d~s~~---aV~I~TVV~~~~~~~i~~~i~ekL~~eryTii~iPi  102 (110)
T PF10126_consen   53 PEMAIKAINDLSEN---AVLIGTVVDEEKVEKIEKLIKEKLKNERYTIIEIPI  102 (110)
T ss_pred             HHHHHHHHHHhccC---cEEEEEEECHHHHHHHHHHHHHHhcCCceEEEEeeE
Confidence            46666666666422   444   4668889999998877 4555668888874

It includes a putative nitrogen regulatory protein PII homolog.

>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

Probab=82.46  E-value=8.3  Score=33.53  Aligned_cols=62  Identities=18%  Similarity=0.373  Sum_probs=51.1

Q ss_pred             ceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--------ehHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q 037034           41 TNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI--------SQYVANMIRFLVDSYNKPIPAILEIPSKD  102 (130)
Q Consensus        41 ~n~~v~~~~t~~ee~~~~~~~l~~~~digII~I--------te~~a~~i~~~I~~~~~~~P~Iv~IPs~~  102 (130)
                      .||.-..-..+.+.+.++|+-+++++++-+|||        |+.+|+-+-+.+.++.-..|.||-+.+.+
T Consensus       319 ANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn  388 (422)
T PLN00124        319 ANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTN  388 (422)
T ss_pred             ceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCC
Confidence            578777666778999999999999999999998        56678777777777767799999987765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
2qai_A	111	Crystal Structure Of The V-Type Atp Synthase Subuni		2e-04

>pdb|2QAI|A Chain A, Crystal Structure Of The V-Type Atp Synthase Subunit F From Pyrococcus Furiosus. Nesg Target Pfr7. Length = 111

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 15  IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
           I +  D DTV GF LAGV          Y   +S  +V+   +  +E   ++D+ I+LI+
Sbjct: 3   IVVXGDSDTVVGFRLAGV-------HEAYEYDESLESVERARNKLRELLERDDVGIILIT 55
Query: 75  QYVANMIRFLVDSYNKPIPAILEIPSK 101
           + +A  I  L +      P IL+IP K
Sbjct: 56  ERLAQRIGSLPEV---KFPIILQIPDK 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
2qai_A	111	V-type ATP synthase subunit F; VATF_pyrfu, ATPF, N	5e-25
3aon_B	115	V-type sodium ATPase subunit G; V-ATPase, coiled-c	2e-22
2ov6_A	101	V-type ATP synthase subunit F; F subunit, A1AO ATP	6e-12
2d00_A	109	V-type ATP synthase subunit F; V-ATPase, CHEY, FRE	2e-11
2i4r_A	102	V-type ATP synthase subunit F; NESG, GR52A, ATP sy	2e-11

>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus} Length = 111

 Score = 90.6 bits (225), Expect = 5e-25
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 15  IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
           I ++ D DTV GF LAGV          Y   +S  +V+   +  +E   ++D+ I+LI+
Sbjct: 3   IVVMGDSDTVVGFRLAGVHEA-------YEYDESLESVERARNKLRELLERDDVGIILIT 55

Query: 75  QYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVK 117
           + +A  I  L +      P IL+IP K        D +   V+
Sbjct: 56  ERLAQRIGSLPEV---KFPIILQIPDK-FGSIYGEDILRDVVR 94

>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae} Length = 115

 Score = 84.0 bits (208), Expect = 2e-22
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 14/104 (13%)

Query: 15  IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
           I ++ D+D+V+ F L G              V   TT   I     E   K +  ++ I+
Sbjct: 5   IGVVGDKDSVSPFRLFGFD------------VQHGTTKTEIRKTIDEM-AKNEYGVIYIT 51

Query: 75  QYVANMIRFLVDSYNK-PIPAILEIPSKDHPYDPAHDSVLSRVK 117
           +  AN++   ++ Y     PAI+ IPS         + + + V+
Sbjct: 52  EQCANLVPETIERYKGQLTPAIILIPSHQGTLGIGLEEIQNSVE 95

>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei} Length = 101

 Score = 56.7 bits (137), Expect = 6e-12
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 15  IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
           +A+I   + VTGF LAG+             V     + A E A +     + + I+++ 
Sbjct: 3   LAVIGKSEFVTGFRLAGISK-----------VYETPDIPATESAVRSVLEDKSVGILVMH 51

Query: 75  QYVANMI-RFLVDSYNKPI-PAILEIPSKDHPYDPAHDSV 112
                 +   L  + N+ + P ++ +           + +
Sbjct: 52  NDDIGNLPEVLRKNLNESVQPTVVALGGSGSGSTSLREKI 91

>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H* Length = 109

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 14/95 (14%)

Query: 15  IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
           +A+IAD +T  GF LAG+                 ++ +  +   +    +   A+V + 
Sbjct: 6   MAVIADPETAQGFRLAGLE------------GYGASSAEEAQSLLETLVERGGYALVAVD 53

Query: 75  QYVANMIRFLVDSY--NKPIPAILEIPSKDHPYDP 107
           + +       V+     + +P +L I      +  
Sbjct: 54  EALLPDPERAVERLMRGRDLPVLLPIAGLKEAFQG 88

>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1 Length = 102

 Score = 55.5 bits (134), Expect = 2e-11
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 13/90 (14%)

Query: 15  IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
           +A++ D D   GF+LAG+ ++       Y +   +  VKA+ED  K    ++D+ +V++ 
Sbjct: 12  LAVVGDPDFTIGFMLAGISDI-------YEVTSDEEIVKAVEDVLK----RDDVGVVIMK 60

Query: 75  QYVANMI-RFLVDSYNKPI-PAILEIPSKD 102
           Q     +   L    ++ + P  + +    
Sbjct: 61  QEYLKKLPPVLRREIDEKVEPTFVSVGGTG 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
3aon_B	115	V-type sodium ATPase subunit G; V-ATPase, coiled-c	99.98
2qai_A	111	V-type ATP synthase subunit F; VATF_pyrfu, ATPF, N	99.98
2d00_A	109	V-type ATP synthase subunit F; V-ATPase, CHEY, FRE	99.97
2ov6_A	101	V-type ATP synthase subunit F; F subunit, A1AO ATP	99.96
2i4r_A	102	V-type ATP synthase subunit F; NESG, GR52A, ATP sy	99.94
3lop_A	364	Substrate binding periplasmic protein; protein str	85.27
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	84.16
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	80.9

>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}

Probab=99.98  E-value=4.6e-33  Score=199.70  Aligned_cols=102  Identities=20%  Similarity=0.345  Sum_probs=91.7

Q ss_pred             cEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhC-CC
Q 037034           13 ALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYN-KP   91 (130)
Q Consensus        13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~-~~   91 (130)
                      +|||||||+||++||||+|+++        |+|.+    ++|++++|++++++ |||||+|||++++.+++.|++|+ +.
T Consensus         3 mKiaVIGD~Dtv~GFrLaGie~--------~~v~~----~ee~~~~~~~l~~~-digIIlIte~ia~~i~~~i~~~~~~~   69 (115)
T 3aon_B            3 YKIGVVGDKDSVSPFRLFGFDV--------QHGTT----KTEIRKTIDEMAKN-EYGVIYITEQCANLVPETIERYKGQL   69 (115)
T ss_dssp             EEEEEESCHHHHGGGGGGTCEE--------ECCCS----HHHHHHHHHHHHHT-TEEEEEEEHHHHTTCHHHHHHHHTSS
T ss_pred             eEEEEEECHHHHHHHHHcCCeE--------EEeCC----HHHHHHHHHHHHhc-CceEEEEeHHHHHHhHHHHHHHhCCC
Confidence            7999999999999999999963        66644    49999999999988 99999999999999999999996 56


Q ss_pred             CcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcccc
Q 037034           92 IPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVAS  127 (130)
Q Consensus        92 ~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~~~  127 (130)
                      .|+|++|||++|++++++++|+++|++|+|+|||..
T Consensus        70 ~P~IveIPs~~g~~~~~~~~i~~~V~~aiG~di~~~  105 (115)
T 3aon_B           70 TPAIILIPSHQGTLGIGLEEIQNSVEKAVGQNILSG  105 (115)
T ss_dssp             SCEEEEECBTTBCCSHHHHHHHHHHHHHTTCC----
T ss_pred             CCEEEEECCCCCCCCccHHHHHHHHHHHhCcceEec
Confidence            999999999999999899999999999999999854

>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}

Probab=99.98  E-value=7.3e-33  Score=197.76  Aligned_cols=101  Identities=30%  Similarity=0.413  Sum_probs=82.7

Q ss_pred             cEEEEEcchhhHHHHHHhcccccccCCcceEEE-ecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHH--HHHHhhC
Q 037034           13 ALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLI-VDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIR--FLVDSYN   89 (130)
Q Consensus        13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v-~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~--~~I~~~~   89 (130)
                      +|||||||+||++||+|+|++++        ++ ++++|+.+|++++|+++++++|||||+|||+++++++  +.++   
T Consensus         1 MKIaVIGD~Dtv~GFrLaGi~~~--------~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~~~i~---   69 (111)
T 2qai_A            1 MKIVVMGDSDTVVGFRLAGVHEA--------YEYDESLESVERARNKLRELLERDDVGIILITERLAQRIGSLPEVK---   69 (111)
T ss_dssp             CEEEEEECHHHHHHHHHHTCSEE--------EECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEHHHHHHHCSCCCCS---
T ss_pred             CEEEEEECHHHHHHHHHcCCceE--------EEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcHHHHhhcccccccC---
Confidence            48999999999999999999964        55 7888999999999999999999999999999999999  7766   


Q ss_pred             CCCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcccc
Q 037034           90 KPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVAS  127 (130)
Q Consensus        90 ~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~~~  127 (130)
                        .|+|++|||++|+++ ++++|+++|++|+|+|||.-
T Consensus        70 --~P~IleIPs~~g~~~-~~d~i~~~V~~aiG~di~~~  104 (111)
T 2qai_A           70 --FPIILQIPDKFGSIY-GEDILRDVVRRAIGVELKRL  104 (111)
T ss_dssp             --SSEEEEECTTC-------CTHHHHHHHHC-------
T ss_pred             --CCEEEEECCCCCCCc-hHHHHHHHHHHHhChhHHhh
Confidence              999999999999998 88999999999999999853

>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*

Probab=99.97  E-value=1.1e-32  Score=195.81  Aligned_cols=101  Identities=18%  Similarity=0.263  Sum_probs=93.9

Q ss_pred             CcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhC--
Q 037034           12 SALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYN--   89 (130)
Q Consensus        12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~--   89 (130)
                      ..|||||||+||++||+|+|+++        |+|.+    ++|++++|+++++++|||||+|||++++.+++.+++|+  
T Consensus         3 ~mkiaVIgD~dtv~GFrLaGi~~--------~~v~~----~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~   70 (109)
T 2d00_A            3 PVRMAVIADPETAQGFRLAGLEG--------YGASS----AEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRG   70 (109)
T ss_dssp             CCCEEEEECHHHHHHHHHTTSEE--------EECSS----HHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHTTC
T ss_pred             ccEEEEEeCHHHHHHHHHcCCeE--------EEeCC----HHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHHHHHhC
Confidence            46899999999999999999963        66644    49999999999999999999999999999999999994  


Q ss_pred             CCCcEEEEcCCCC---CCCChhhhHHHHHHHHhcCCCcc
Q 037034           90 KPIPAILEIPSKD---HPYDPAHDSVLSRVKNLFSAESV  125 (130)
Q Consensus        90 ~~~P~Iv~IPs~~---g~~~~~~d~i~~~V~~AiGvdi~  125 (130)
                      +..|+|++|||++   |++ .++++|+++|++|+|+|||
T Consensus        71 ~~~P~Il~IPs~~~~~g~~-~~~~~i~~~V~~aiG~di~  108 (109)
T 2d00_A           71 RDLPVLLPIAGLKEAFQGH-DVEGYMRELVRKTIGFDIK  108 (109)
T ss_dssp             CCCCEEEEESCGGGGGSSS-CHHHHHHHHHHHHHSCCCC
T ss_pred             CCCeEEEEECCCcccCCCc-chHHHHHHHHHHHhCCccc
Confidence            8899999999999   999 7899999999999999997

>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}

Probab=99.96  E-value=1.4e-31  Score=187.63  Aligned_cols=98  Identities=20%  Similarity=0.334  Sum_probs=88.2

Q ss_pred             cEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHH-HhhC-C
Q 037034           13 ALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLV-DSYN-K   90 (130)
Q Consensus        13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I-~~~~-~   90 (130)
                      .|||||||+||++||+|+|++++       |+|.++    +|++++|+++++++|||||+|||++++.+++.+ +.+. +
T Consensus         1 MkiaVIGD~dtv~GFrLaGi~~v-------~~v~~~----ee~~~~~~~l~~~~digIIlite~~a~~i~~~i~~~~~~~   69 (101)
T 2ov6_A            1 MELAVIGKSEFVTGFRLAGISKV-------YETPDI----PATESAVRSVLEDKSVGILVMHNDDIGNLPEVLRKNLNES   69 (101)
T ss_dssp             CCEEEEECHHHHHHHHHHTCCEE-------EECCST----TTHHHHHHHHHHHTSSSEEEEEHHHHTTCTTTTHHHHHHH
T ss_pred             CEEEEEECHHHHHHHHHcCCCce-------EecCCH----HHHHHHHHHHhhCCCeEEEEEcHHHHHHhHHHHHHHHhCC
Confidence            47999999999999999999976       667555    999999999999999999999999999999999 5554 7


Q ss_pred             CCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcc
Q 037034           91 PIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV  125 (130)
Q Consensus        91 ~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~  125 (130)
                      ..|+|++|||++ +   +.++++++|++|+|+|||
T Consensus        70 ~~P~Iv~IP~~~-~---~~~~i~~~v~~aiG~di~  100 (101)
T 2ov6_A           70 VQPTVVALGGSG-S---GSTSLREKIKQAVGVDLW  100 (101)
T ss_dssp             CCSCEEEECTTS-S---CCCCCCCCCSGGGHHHHH
T ss_pred             CCcEEEEECCCC-C---ChhHHHHHHHHHhChHhc
Confidence            999999999999 1   238899999999999987

>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1

Probab=99.94  E-value=8.7e-28  Score=169.10  Aligned_cols=92  Identities=17%  Similarity=0.385  Sum_probs=69.5

Q ss_pred             CcEEEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhCC-
Q 037034           12 SALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNK-   90 (130)
Q Consensus        12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~~-   90 (130)
                      ++-+|||||+||++||||+|++++       +.+.    +++|++++|+++++++|||||+|||++++++++.|++|+. 
T Consensus         9 ~~~~aVIGD~Dtv~GFrLaGi~~~-------~~~~----~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~i~~~~~~   77 (102)
T 2i4r_A            9 SHMLAVVGDPDFTIGFMLAGISDI-------YEVT----SDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDE   77 (102)
T ss_dssp             CCEEEEEECHHHHHHHHHTTCCCE-------EECC----SHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTT
T ss_pred             ceeEEEEcCHHHHHHHHHcCCCcc-------cCCC----CHHHHHHHHHHHhhCCCeEEEEEeHHHHHHHHHHHHHHHhC
Confidence            467999999999999999999964       2133    3599999999999999999999999999999999999974 


Q ss_pred             -CCcEEEEcCCCCCCCChhhhHHHHHHHHh
Q 037034           91 -PIPAILEIPSKDHPYDPAHDSVLSRVKNL  119 (130)
Q Consensus        91 -~~P~Iv~IPs~~g~~~~~~d~i~~~V~~A  119 (130)
                       ..|+|++|||++|+.     .++++|+||
T Consensus        78 ~~~P~IieIPs~~g~~-----~i~~~V~rA  102 (102)
T 2i4r_A           78 KVEPTFVSVGGTGGVE-----EIREKIRKA  102 (102)
T ss_dssp             CCSSEEEEEC--------------------
T ss_pred             CCccEEEEECCCCCCc-----cHHhHhhcC
Confidence             899999999999983     688888886

>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}

Probab=85.27  E-value=7.4  Score=29.70  Aligned_cols=85  Identities=7%  Similarity=0.104  Sum_probs=52.8

Q ss_pred             CCCCCcEEEEEcch---------hhHHHHHHh--------cccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeE
Q 037034            8 PTKSSALIAMIADE---------DTVTGFLLA--------GVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAI   70 (130)
Q Consensus         8 ~~~~~~kIaVIGD~---------dtv~GFrLa--------Gi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digI   70 (130)
                      |+...-+|+++...         +...|++++        |+.|    ++..+++.|...+++...+.+++|+.++.+-.
T Consensus         1 ~t~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G----~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~   76 (364)
T 3lop_A            1 MSLADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGING----ETIRLVARDDEQKIEQTVRNVRDMARVDNPVA   76 (364)
T ss_dssp             ----CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTT----BCEEEEEEECTTCHHHHHHHHHHHHHHSCEEE
T ss_pred             CCCCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCC----eEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEE
Confidence            34566889999873         356677765        3322    22335666666667888899999997667766


Q ss_pred             EE--EehHHHHHHHH--HHHhhCCCCcEEEEc
Q 037034           71 VL--ISQYVANMIRF--LVDSYNKPIPAILEI   98 (130)
Q Consensus        71 I~--Ite~~a~~i~~--~I~~~~~~~P~Iv~I   98 (130)
                      |+  .+......+.+  .+++.  ..|+|..-
T Consensus        77 iig~~~s~~~~~~~~~~~~~~~--~iP~v~~~  106 (364)
T 3lop_A           77 LLTVVGTANVEALMREGVLAEA--RLPLVGPA  106 (364)
T ss_dssp             EECCCCHHHHHHHHHTTHHHHH--TCCEESCS
T ss_pred             EEecCCCHHHHhhCchhhHHhc--CCcEEEcc
Confidence            65  34555666666  66664  37776543

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*

Probab=84.16  E-value=5.9  Score=32.60  Aligned_cols=99  Identities=17%  Similarity=0.229  Sum_probs=65.0

Q ss_pred             EEEEEcchh-----hHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--------ehHHHHH
Q 037034           14 LIAMIADED-----TVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI--------SQYVANM   80 (130)
Q Consensus        14 kIaVIGD~d-----tv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~I--------te~~a~~   80 (130)
                      +|++|++--     |.--..+.|.+      -.||.-..-..+.+.+.++|+-+++++++-.||+        ++.+|+.
T Consensus       265 ~Ig~~~nGaGlam~t~D~i~~~Gg~------paNflDvgG~a~~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~vA~g  338 (395)
T 2fp4_B          265 NIACFVNGAGLAMATCDIIFLNGGK------PANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANG  338 (395)
T ss_dssp             SEEEEESSHHHHHHHHHHHHHTTCC------BCEEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHHH
T ss_pred             eEEEEecCchHHHHHHHHHHHcCCC------cCCcEEECCCCCHHHHHHHHHHHhCCCCCCEEEEEecCCccCcHHHHHH
Confidence            688887731     11123444543      2478777666778999999999999999888886        3557777


Q ss_pred             HHHHHHhhCCCCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcc
Q 037034           81 IRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV  125 (130)
Q Consensus        81 i~~~I~~~~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~  125 (130)
                      +-+.+.++....|+||-+-+.+      .+.-++.++++ |+.++
T Consensus       339 ii~a~~~~~~~~Pivvrl~G~n------~~~g~~~L~~~-gl~~~  376 (395)
T 2fp4_B          339 ITKACRELELKVPLVVRLEGTN------VHEAQNILTNS-GLPIT  376 (395)
T ss_dssp             HHHHHHHHTCCSCEEEEEEETT------HHHHHHHHHHT-CSCCE
T ss_pred             HHHHHHhcCCCCeEEEEcCCCC------HHHHHHHHHHC-CCceE
Confidence            7777777666789999764322      23344455443 66665

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*

Probab=80.90  E-value=5.8  Score=32.50  Aligned_cols=99  Identities=17%  Similarity=0.263  Sum_probs=66.2

Q ss_pred             EEEEEcchh-----hHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--------ehHHHHH
Q 037034           14 LIAMIADED-----TVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI--------SQYVANM   80 (130)
Q Consensus        14 kIaVIGD~d-----tv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~I--------te~~a~~   80 (130)
                      +|++|++--     |.--..+.|.+      -.||.-..-..+.+.+.++|+-+++++++-.||+        |+.+|+.
T Consensus       258 ~Ig~~~nGaGl~m~t~D~i~~~Gg~------~aNflD~gG~a~~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~~vA~g  331 (388)
T 2nu8_B          258 NIGCMVNGAGLAMGTMDIVKLHGGE------PANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADG  331 (388)
T ss_dssp             SEEEEESSHHHHHHHHHHHHHTTCC------BCEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHH
T ss_pred             EEEEEeCCCchhhhhhHHHHHcCCC------cCceeEecCCCCHHHHHHHHHHHhcCCCCCEEEEEecCCcCCchHHHHH
Confidence            688887732     22234455543      2468776666678999999999999999888877        3567777


Q ss_pred             HHHHHHhhCCCCcEEEEcCCCCCCCChhhhHHHHHHHHhcCCCcc
Q 037034           81 IRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV  125 (130)
Q Consensus        81 i~~~I~~~~~~~P~Iv~IPs~~g~~~~~~d~i~~~V~~AiGvdi~  125 (130)
                      +-+.+.++....|+||-+.+.+      .+.-++.+++. |+.+.
T Consensus       332 ii~a~~~~~~~~pivvrl~G~n------~~~g~~~l~~~-g~~~~  369 (388)
T 2nu8_B          332 IIGAVAEVGVNVPVVVRLEGNN------AELGAKKLADS-GLNII  369 (388)
T ss_dssp             HHHHHHHHTCCSCEEEEEESTT------HHHHHHHHHTT-CSSEE
T ss_pred             HHHHHHhcCCCCeEEEEeCCCC------HHHHHHHHHHC-CCcee
Confidence            7777777656789999774432      23344555543 66655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d2d00a1	104	c.149.1.1 (A:6-109) V-type ATP synthase subunit F,	3e-22
d2i4ra1	76	c.149.1.1 (A:4-79) V-type ATP synthase subunit F,	3e-14

>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]} Length = 104

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Thermus thermophilus [TaxId: 274]

 Score = 82.4 bits (204), Expect = 3e-22
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 16/107 (14%)

Query: 15  IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
           +A+IAD +T  GF LAG+                 ++ +  +   +    +   A+V + 
Sbjct: 1   MAVIADPETAQGFRLAGLEGYG------------ASSAEEAQSLLETLVERGGYALVAVD 48

Query: 75  QYVANMIRFLVDSY--NKPIPAILEIPSKDHPYDP--AHDSVLSRVK 117
           + +       V+     + +P +L I      +        +   V+
Sbjct: 49  EALLPDPERAVERLMRGRDLPVLLPIAGLKEAFQGHDVEGYMRELVR 95

>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]} Length = 76

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 60.8 bits (148), Expect = 3e-14
 Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 13/86 (15%)

Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
          +A++ D D   GF+LAG+ ++              T+ + I  A ++   ++D+ +V++ 
Sbjct: 1  LAVVGDPDFTIGFMLAGISDIYE-----------VTSDEEIVKAVEDVLKRDDVGVVIMK 49

Query: 75 QYVANMIRFLVDSY--NKPIPAILEI 98
          Q     +  ++      K  P  + +
Sbjct: 50 QEYLKKLPPVLRREIDEKVEPTFVSV 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d2d00a1	104	V-type ATP synthase subunit F, AtpF {Thermus therm	99.96
d2i4ra1	76	V-type ATP synthase subunit F, AtpF {Archaeoglobus	99.88
d1eucb1	148	Succinyl-CoA synthetase, beta-chain, C-terminal do	87.96
d2nu7b1	150	Succinyl-CoA synthetase, beta-chain, C-terminal do	86.55

>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=5.9e-31  Score=183.69  Aligned_cols=98  Identities=18%  Similarity=0.311  Sum_probs=88.8

Q ss_pred             EEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHhhC--CCC
Q 037034           15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYN--KPI   92 (130)
Q Consensus        15 IaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~~~--~~~   92 (130)
                      ||||||+||++||||+|+++        |.+.+    ++|++++|++++++++||||+|||++++.+++.+++|+  +..
T Consensus         1 IaViGd~dtv~GFrLaGi~~--------~~v~~----~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~~~i~~~~~~~~~   68 (104)
T d2d00a1           1 MAVIADPETAQGFRLAGLEG--------YGASS----AEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRGRDL   68 (104)
T ss_dssp             EEEEECHHHHHHHHHTTSEE--------EECSS----HHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHTTCCCC
T ss_pred             CEEEcCHHHHHHHHHcCCee--------ecCCC----HHHHHHHHHHHHhCCCeEEEEEcHHHHHhhHHHHHHHHhcCCC
Confidence            79999999999999999974        66655    49999999999999999999999999999999999984  678


Q ss_pred             cEEEEcCCCCCCCCh--hhhHHHHHHHHhcCCCc
Q 037034           93 PAILEIPSKDHPYDP--AHDSVLSRVKNLFSAES  124 (130)
Q Consensus        93 P~Iv~IPs~~g~~~~--~~d~i~~~V~~AiGvdi  124 (130)
                      |+|++||+++|+++.  ++++|+++|+||||+||
T Consensus        69 P~Il~IP~~~g~~~~~~~~~~ir~~v~rAiG~di  102 (104)
T d2d00a1          69 PVLLPIAGLKEAFQGHDVEGYMRELVRKTIGFDI  102 (104)
T ss_dssp             CEEEEESCGGGGGSSSCHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEeCCCCCCCCcchHHHHHHHHHHHHhCCCc
Confidence            999999999988543  45789999999999998

>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=1e-23  Score=139.71  Aligned_cols=73  Identities=22%  Similarity=0.509  Sum_probs=66.1

Q ss_pred             EEEEcchhhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehHHHHHHHHHHHh-hC-CCC
Q 037034           15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDS-YN-KPI   92 (130)
Q Consensus        15 IaVIGD~dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~Ite~~a~~i~~~I~~-~~-~~~   92 (130)
                      ||||||+||++||||+|++++       |++.++    +|++++|+++++++|||||++||++++++++.+.+ ++ +..
T Consensus         1 IaViGd~dtv~GF~LaGi~~~-------~~v~~~----ee~~~~i~~~~~~~digII~Ite~~a~~i~~~i~~~~~~~~~   69 (76)
T d2i4ra1           1 LAVVGDPDFTIGFMLAGISDI-------YEVTSD----EEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDEKVE   69 (76)
T ss_dssp             EEEEECHHHHHHHHHTTCCCE-------EECCSH----HHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTTCCS
T ss_pred             CEEEechHHHHHHHHhCCCcc-------ccCCCH----HHHHHHHHHHhcCCCeEEEEEeHHHHHHhhHHHHHHHhcCCC
Confidence            799999999999999999865       677554    99999999999999999999999999999999955 54 789


Q ss_pred             cEEEEc
Q 037034           93 PAILEI   98 (130)
Q Consensus        93 P~Iv~I   98 (130)
                      |+|++|
T Consensus        70 P~Vi~I   75 (76)
T d2i4ra1          70 PTFVSV   75 (76)
T ss_dssp             SEEEEE
T ss_pred             CEEEec
Confidence            999998

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.96  E-value=1.3  Score=30.59  Aligned_cols=83  Identities=19%  Similarity=0.291  Sum_probs=62.2

Q ss_pred             EEEEEcch-----hhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe--------hHHHHH
Q 037034           14 LIAMIADE-----DTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS--------QYVANM   80 (130)
Q Consensus        14 kIaVIGD~-----dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~It--------e~~a~~   80 (130)
                      .|++|++=     .|.---.+.|-.      -.||.-..-..+.+.+.++|+-+++++++-.|||+        +.+|+-
T Consensus        20 ~IG~i~NGAGlaMaTmD~i~~~Gg~------pANFlDiGGga~~e~v~~al~iil~d~~Vk~IlINIfGGI~rcD~vA~G   93 (148)
T d1eucb1          20 NIACFVNGAGLAMATCDIIFLNGGK------PANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANG   93 (148)
T ss_dssp             SEEEEESSHHHHHHHHHHHHHTTCC------BSEEEECCSSCCHHHHHHHHHHTTSCTTCCEEEEEEECSSSCHHHHHHH
T ss_pred             cEEEEecCCccchhHHHHHHHcCCC------eeeEEecCCCCCHHHHHHHHHHHHCCCCccEEEEEeeEeehhHHHHHHH
Confidence            46777662     233334455553      35788777777889999999999999999999987        557777


Q ss_pred             HHHHHHhhCCCCcEEEEcCCCC
Q 037034           81 IRFLVDSYNKPIPAILEIPSKD  102 (130)
Q Consensus        81 i~~~I~~~~~~~P~Iv~IPs~~  102 (130)
                      +-+.+++.....|+||.+.+.+
T Consensus        94 Iv~A~~e~~~~iPiVVRL~Gtn  115 (148)
T d1eucb1          94 ITKACRELELKVPLVVRLEGTN  115 (148)
T ss_dssp             HHHHHHHHTCCSCEEEEEESTT
T ss_pred             HHHHHHhcCCCccEEEEeccCC
Confidence            7777777777799999997755

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.55  E-value=1.9  Score=29.68  Aligned_cols=83  Identities=20%  Similarity=0.314  Sum_probs=60.6

Q ss_pred             EEEEEcch-----hhHHHHHHhcccccccCCcceEEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe--------hHHHHH
Q 037034           14 LIAMIADE-----DTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS--------QYVANM   80 (130)
Q Consensus        14 kIaVIGD~-----dtv~GFrLaGi~~~~~~~~~n~~v~~~~t~~ee~~~~~~~l~~~~digII~It--------e~~a~~   80 (130)
                      .|++|++=     .|.---...|-.      -.||.-..-..+.+.+.++|+-+++++++-.|||.        ..+|+-
T Consensus        20 ~Ig~i~nGAGlamaTmD~i~~~Gg~------pANFlDiGG~a~~e~v~~al~lil~d~~vk~IlINifGGI~rcd~vA~G   93 (150)
T d2nu7b1          20 NIGCMVNGAGLAMGTMDIVKLHGGE------PANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADG   93 (150)
T ss_dssp             SEEEEESSHHHHHHHHHHHHHTTCC------BCEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHH
T ss_pred             cEEEEEcCCccchhhHHHHHHCCCC------eeEEEecCCCccHHHHHHHHHHHHcCCCCCEEEEEEeeeeehhHHHHHH
Confidence            46666662     222233344543      35787776677889999999999999999999996        557777


Q ss_pred             HHHHHHhhCCCCcEEEEcCCCC
Q 037034           81 IRFLVDSYNKPIPAILEIPSKD  102 (130)
Q Consensus        81 i~~~I~~~~~~~P~Iv~IPs~~  102 (130)
                      +-+.+.+.....|+||.+-+.+
T Consensus        94 Iv~A~k~~~~~iPiVVRl~Gtn  115 (150)
T d2nu7b1          94 IIGAVAEVGVNVPVVVRLEGNN  115 (150)
T ss_dssp             HHHHHHHHTCCSCEEEEEESTT
T ss_pred             HHHHHHhcCCCCcEEEEecCCC
Confidence            7777777777889999997755