Citrus Sinensis ID: 037051

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
MRKLEHGELKATFPKIVFNPSFEEDEEKCMDITTVQRSTMSRLSPEETSDLTGSERKAEPVRQNPTLPPPASVRLLTQPPPPPPPPPPSVNHPSQATLPPIRSSSRTVVGHVKLKSLHWDKVATNVDHSMVWNEINDGSLRFDDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAELFILEPRKCQNTAIVLRSLAISQKEIIEALLDGQGLSIDILEKLAKLSSSQDDANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRNLQKKNGTTSVASSPPL
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHccccccccccccccccccEEEEcccHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
ccccccccccccccccEEccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccEHHHcccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccEEEEHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
mrklehgelkatfpkivfnpsfeedeekcmDITTVQrstmsrlspeetsdltgserkaepvrqnptlpppasvrlltqppppppppppsvnhpsqatlppirsssrtvvghvklkslhwdkvatnvdhsmvwneindgslrfddeqienlfgysTINRRLYErsktsmssgssnaaptaelfileprkcqNTAIVLRSLAISQKEIIEALLDGQGLSIDILEKLAKLSSSQDDANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKmnagtsrgnaQRFNLSALRKlsdvkstngktTLLYFVVEQRDNkylkqrlpaveglsnefnnVNKAVRIELDTFINTYSALASRVVEIWELVTHCassekggfLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYqaggskekwghplQLFVIVKEFLDMVDTVCADISRnlqkkngttsvassppl
mrklehgelkatfpkivfnpsfeedeekCMDITtvqrstmsrlspeetsdltgserkaepvrqnptlpppASVRLLTQPPPPPPPPPPSVNHPSQATLPPIRSSSRTVVGHVKLKSLHWDKVATNVDHSMVWNEINdgslrfddeQIENLFGYSTINRRLYERSKtsmssgssnaAPTAELFILEPRKCQNTAIVLRSLAISQKEIIEALLDGQGLSIDILEKLAKLSSSQDDANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGnkmnagtsrgnaQRFNLSALrklsdvkstngktTLLYFVVEQRDNKYLKQRlpaveglsnefnnVNKAVRIELDTFINTYSALASRVVEIWELVTHCassekggfLKEMKGLLEECKEELKlvrndqnrtmelVKRTTKYYQaggskekwghpLQLFVIVKEFLDMVDTVCADIsrnlqkkngttsvassppl
MRKLEHGELKATFPKIVFNPSFEEDEEKCMDITTVQRSTMSRLSPEETSDLTGSERKAEPVRQNPTLPPPASVRLLTQppppppppppSVNHPSQATLPPIRSSSRTVVGHVKLKSLHWDKVATNVDHSMVWNEINDGSLRFDDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAELFILEPRKCQNTAIVLRSLAISQKEIIEALLDGQGLSIDILEKLAKLSSSQDDANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASSEKGGFlkemkglleeckeelklVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRNLQKKNGTTSVASSPPL
**************KIVF****************************************************************************************TVVGHVKLKSLHWDKVATNVDHSMVWNEINDGSLRFDDEQIENLFGYSTINRRLY******************ELFILEPRKCQNTAIVLRSLAISQKEIIEALLDGQGLSIDILEKLAKLSSSQDDANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGN***************L*ALRKL*DVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADIS******************
*********************************************************************************************************************HWDKVATNVDHSMVWNEINDGSLRFDDEQIENLF*******************************ILEPRKCQNTAIVLRSLAISQKEIIEALLDGQGLSIDILEKLAKLSSSQDDANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEI*****************EMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTV***********************
MRKLEHGELKATFPKIVFNPSFEEDEEKCMDITTVQ****************************PTLPPPASVRLLTQPPPPPPPPPPSVNHPSQATLPPIRSSSRTVVGHVKLKSLHWDKVATNVDHSMVWNEINDGSLRFDDEQIENLFGYSTINRRLYER*************PTAELFILEPRKCQNTAIVLRSLAISQKEIIEALLDGQGLSIDILEKLAKLSSSQDDANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRNLQKK************
*****HGELKATFPKIVFNPSFEED*************************************************************************************HVKLKSLHWDKVATNVDHSMVWNEINDGSLRFDDEQIENLFGYSTI*********************TAELFILEPRKCQNTAIVLRSLAISQKEIIEALLDGQGLSIDILEKLAKLSSSQDDANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRNLQK*************
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MRKLEHGELKATFPKIVFNPSFEEDEEKCMDITTVQRSTMSRLSPEETSDLTGSERKAEPVRQNPTLPPPASVRLLTQPPPPPPPPPPSVNHPSQATLPPIRSSSRTVVGHVKLKSLHWDKVATNVDHSMVWNEINDGSLRFDDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAELFILEPRKCQNTAIVLRSLAISQKEIIEALLDGQGLSIDILEKLAKLSSSQDDANTFLFHILKVIPSAFTRVNAMLFRSNYKSExxxxxxxxxxxxxxxxxxxxxVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASSEKGGFxxxxxxxxxxxxxxxxxxxxxQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRNLQKKNGTTSVASSPPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query492 2.2.26 [Sep-21-2011]
O04532760 Formin-like protein 8 OS= yes no 0.784 0.507 0.425 1e-98
O48682763 Formin-like protein 4 OS= no no 0.75 0.483 0.439 5e-96
A3AB67906 Formin-like protein 16 OS yes no 0.745 0.405 0.426 1e-95
Q9XIE0929 Formin-like protein 7 OS= no no 0.725 0.384 0.453 9e-93
Q10Q99892 Formin-like protein 8 OS= no no 0.701 0.386 0.343 2e-64
Q9SE971051 Formin-like protein 1 OS= no no 0.725 0.339 0.368 2e-63
Q8H8K7849 Formin-like protein 4 OS= no no 0.707 0.409 0.346 5e-62
Q9FJX6899 Formin-like protein 6 OS= no no 0.745 0.408 0.331 6e-62
Q7XUV2833 Formin-like protein 2 OS= no no 0.731 0.432 0.345 2e-60
A2XUA1833 Formin-like protein 2 OS= N/A no 0.731 0.432 0.345 2e-60
>sp|O04532|FH8_ARATH Formin-like protein 8 OS=Arabidopsis thaliana GN=FH8 PE=1 SV=1 Back     alignment and function desciption
 Score =  360 bits (924), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 196/461 (42%), Positives = 279/461 (60%), Gaps = 75/461 (16%)

Query: 86  PPPSVNHPSQATLPPIRSSSRTVVG-HVKLKSLHWDKVATNVDHSMVWNEINDGSLRFDD 144
           PPP+          P+R +S       VKLK LHWDKV  + DHSMVW++I+ GS  FD 
Sbjct: 287 PPPA----------PVRGASGGETSKQVKLKPLHWDKVNPDSDHSMVWDKIDRGSFSFDG 336

Query: 145 EQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAELFILEPRKCQNTAIVLRSLAISQK 204
           + +E LFGY  + ++  E+       G      + ++FIL+PRK QNTAIVL+SL ++++
Sbjct: 337 DLMEALFGYVAVGKKSPEQ-------GDEKNPKSTQIFILDPRKSQNTAIVLKSLGMTRE 389

Query: 205 EIIEALLDGQGLSIDILEKLAKLSSSQD----------------DANTFLFHILKVIPSA 248
           E++E+L++G     D LE+LA+++ +++                DA TFLFH+LK +P+A
Sbjct: 390 ELVESLIEGNDFVPDTLERLARIAPTKEEQSAILEFDGDTAKLADAETFLFHLLKSVPTA 449

Query: 249 FTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSR 308
           FTR+NA LFR+NY  E+    + LQ L++   ELR+R +F+KLLEAILKAGN+MNAGT+R
Sbjct: 450 FTRLNAFLFRANYYPEMAHHSKCLQTLDLACKELRSRGLFVKLLEAILKAGNRMNAGTAR 509

Query: 309 GNAQRFNLSALRKLSDVKSTNGKTTLLYFVV----------------------------- 339
           GNAQ FNL+AL KLSDVKS +GKT+LL FVV                             
Sbjct: 510 GNAQAFNLTALLKLSDVKSVDGKTSLLNFVVEEVVRSEGKRCVMNRRSHSLTRSGSSNYN 569

Query: 340 -----------EQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVE 388
                      E+++ +YLK  LP V GLS+EF+NV KA  ++ +T + T SALA R  +
Sbjct: 570 GGNSSLQVMSKEEQEKEYLKLGLPVVGGLSSEFSNVKKAACVDYETVVATCSALAVRAKD 629

Query: 389 IWELVTHCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEK 448
              ++  C   E G F+K M   L+  +EE+K+ + ++ + MELVKRTT YYQA G+  K
Sbjct: 630 AKTVIGECEDGEGGRFVKTMMTFLDSVEEEVKIAKGEERKVMELVKRTTDYYQA-GAVTK 688

Query: 449 WGHPLQLFVIVKEFLDMVDTVCADISRNLQKKNGTTSVASS 489
             +PL LFVIV++FL MVD VC DI RN+Q++   + ++ S
Sbjct: 689 GKNPLHLFVIVRDFLAMVDKVCLDIMRNMQRRKVGSPISPS 729
Might be involved in the organization and polarity of the actin cytoskeleton. Interacts with the barbed end of actin filaments and nucleates actin-filament polymerization in vitro.
Arabidopsis thaliana (taxid: 3702)
>sp|O48682|FH4_ARATH Formin-like protein 4 OS=Arabidopsis thaliana GN=FH4 PE=1 SV=2 Back     alignment and function description
>sp|A3AB67|FH16_ORYSJ Formin-like protein 16 OS=Oryza sativa subsp. japonica GN=FH16 PE=2 SV=1 Back     alignment and function description
>sp|Q9XIE0|FH7_ARATH Formin-like protein 7 OS=Arabidopsis thaliana GN=FH7 PE=2 SV=1 Back     alignment and function description
>sp|Q10Q99|FH8_ORYSJ Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8 PE=2 SV=1 Back     alignment and function description
>sp|Q9SE97|FH1_ARATH Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1 Back     alignment and function description
>sp|Q8H8K7|FH4_ORYSJ Formin-like protein 4 OS=Oryza sativa subsp. japonica GN=FH4 PE=3 SV=1 Back     alignment and function description
>sp|Q9FJX6|FH6_ARATH Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1 Back     alignment and function description
>sp|Q7XUV2|FH2_ORYSJ Formin-like protein 2 OS=Oryza sativa subsp. japonica GN=FH2 PE=2 SV=2 Back     alignment and function description
>sp|A2XUA1|FH2_ORYSI Formin-like protein 2 OS=Oryza sativa subsp. indica GN=FH2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query492
297733852 1369 unnamed protein product [Vitis vinifera] 0.833 0.299 0.577 1e-138
359491274 734 PREDICTED: formin-like protein 8-like [V 0.833 0.558 0.548 1e-136
224135717580 predicted protein [Populus trichocarpa] 0.813 0.689 0.566 1e-134
356519005 662 PREDICTED: formin-like protein 8-like [G 0.959 0.712 0.477 1e-125
255540815 702 actin binding protein, putative [Ricinus 0.979 0.686 0.449 1e-119
296086486 724 unnamed protein product [Vitis vinifera] 0.784 0.533 0.503 1e-111
224102661 760 predicted protein [Populus trichocarpa] 0.833 0.539 0.468 1e-111
356501964 800 PREDICTED: formin-like protein 8-like [G 0.810 0.498 0.473 1e-109
296082879 751 unnamed protein product [Vitis vinifera] 0.784 0.513 0.498 1e-108
225452747 819 PREDICTED: formin-like protein 4 [Vitis 0.784 0.471 0.498 1e-108
>gi|297733852|emb|CBI15099.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/459 (57%), Positives = 321/459 (69%), Gaps = 49/459 (10%)

Query: 82  PPPPPPPSVNHPSQATLPPIRSSSRTVVGHVKLKSLHWDKVATNVDHSMVWNEINDGSLR 141
           PPP P   +N  ++A      SS  T  G +KLK LHWDKV  NVDHS+VW+EINDGS R
Sbjct: 392 PPPVPRGKMNSNNRAEASTEGSSKGTDFGQMKLKPLHWDKVIANVDHSIVWDEINDGSFR 451

Query: 142 FDDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAELFILEPRKCQNTAIVLRSLAI 201
           FDDE +E+LFGY T N++  E +   ++S SSN+A   ++FILEPRK QNTAIVLRSLA+
Sbjct: 452 FDDELMESLFGY-TANQKPPEMNNKPVTSSSSNSALPTQIFILEPRKSQNTAIVLRSLAV 510

Query: 202 SQKEIIEALLDGQGLSIDILEKLAKLSSSQD----------------DANTFLFHILKVI 245
           S++EI++ALL+GQGL+ D LEKL K+S +Q+                DA +FL+HILKV+
Sbjct: 511 SRREILDALLEGQGLTTDTLEKLTKISPTQEEESKILQFNGNPTKLADAESFLYHILKVV 570

Query: 246 PSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAG 305
           PSAF R NAMLFR+NY  EIL LKESLQ LE+   ELR+R +FLKLLEAILKAGN+MNAG
Sbjct: 571 PSAFMRFNAMLFRTNYDPEILHLKESLQTLELACKELRSRGLFLKLLEAILKAGNRMNAG 630

Query: 306 TSRGNAQRFNLSALRKLSDVKSTNGKTTLLYFVVEQ------------------------ 341
           T+RGNAQ FNLSALR+LSDVKS +GKTTLL+FVVEQ                        
Sbjct: 631 TARGNAQGFNLSALRRLSDVKSIDGKTTLLHFVVEQVVRSEGRRCAINQNDSLDRKKEKE 690

Query: 342 --------RDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELV 393
                   ++ +YL   LP + GLS EF NV KA  I+ DTFIN  S L +RV EI  LV
Sbjct: 691 NEKEKENKKEKEYLMLGLPVLGGLSTEFYNVKKAAVIDHDTFINMCSTLTARVAEIQLLV 750

Query: 394 THCASSEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPL 453
             C++ EKG F++EMKG LEEC+EELK+VR +Q R MELVKRTT+YYQAG SK+K G PL
Sbjct: 751 ASCSNGEKGRFVQEMKGFLEECEEELKVVRVEQTRVMELVKRTTEYYQAGASKDKGGQPL 810

Query: 454 QLFVIVKEFLDMVDTVCADISRNLQKKNGTTSVASSPPL 492
           QLF+IVK+FLDMVD  C DI R LQKKN T +V SSPPL
Sbjct: 811 QLFLIVKDFLDMVDQACQDIYRRLQKKNVTKTVGSSPPL 849

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359491274|ref|XP_002280505.2| PREDICTED: formin-like protein 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224135717|ref|XP_002322143.1| predicted protein [Populus trichocarpa] gi|222869139|gb|EEF06270.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356519005|ref|XP_003528165.1| PREDICTED: formin-like protein 8-like [Glycine max] Back     alignment and taxonomy information
>gi|255540815|ref|XP_002511472.1| actin binding protein, putative [Ricinus communis] gi|223550587|gb|EEF52074.1| actin binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296086486|emb|CBI32075.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102661|ref|XP_002312768.1| predicted protein [Populus trichocarpa] gi|222852588|gb|EEE90135.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356501964|ref|XP_003519793.1| PREDICTED: formin-like protein 8-like [Glycine max] Back     alignment and taxonomy information
>gi|296082879|emb|CBI22180.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452747|ref|XP_002277455.1| PREDICTED: formin-like protein 4 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query492
TAIR|locus:2025981929 AT1G59910 [Arabidopsis thalian 0.461 0.244 0.514 6.7e-83
TAIR|locus:2020568760 FH8 "formin 8" [Arabidopsis th 0.538 0.348 0.451 3.5e-59
TAIR|locus:2172129900 Fh5 "formin homology5" [Arabid 0.453 0.247 0.428 3.4e-58
TAIR|locus:2079807884 AT3G05470 [Arabidopsis thalian 0.497 0.277 0.391 9.1e-41
TAIR|locus:2156248782 AT5G48360 [Arabidopsis thalian 0.585 0.368 0.323 3.2e-35
TAIR|locus:20944931051 AFH1 "formin homology 1" [Arab 0.672 0.314 0.326 5.4e-35
TAIR|locus:2158576899 FH6 "formin homolog 6" [Arabid 0.510 0.279 0.332 1.4e-34
TAIR|locus:2043989894 AT2G43800 [Arabidopsis thalian 0.666 0.366 0.314 5.5e-30
TAIR|locus:2079711841 AT3G07540 [Arabidopsis thalian 0.839 0.491 0.262 1.5e-25
UNIPROTKB|E2R2921068 DAAM1 "Uncharacterized protein 0.717 0.330 0.258 3.9e-17
TAIR|locus:2025981 AT1G59910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 586 (211.3 bits), Expect = 6.7e-83, Sum P(3) = 6.7e-83
 Identities = 126/245 (51%), Positives = 166/245 (67%)

Query:   113 KLKSLHWDKVATNVDHSMVWNEINDGSLRFDDEQIENLFGYSTINRRLYERSKTSMSSGS 172
             KLK LHWDK+  +   SMVW++I+ GS  FD + +E LFGY  + R+  E +    +   
Sbjct:   462 KLKPLHWDKMNPDASRSMVWHKIDGGSFNFDGDLMEALFGY--VARKPSESNSVPQNQTV 519

Query:   173 SNAAPTAELFILEPRKCQNTAIVLRSLAISQKEIIEALLDGQGLSIDILEKLAKLSSSQD 232
             SN+ P  + +IL+PRK QN AIVL+SL ++++EII+ L +G     D LEKLA ++ + +
Sbjct:   520 SNSVPHNQTYILDPRKSQNKAIVLKSLGMTKEEIIDLLTEGHDAESDTLEKLAGIAPTPE 579

Query:   233 D----------------ANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALE 276
             +                A++ LFHILK +PSAF R N MLF+ NY SE+ Q K SL  LE
Sbjct:   580 EQTEIIDFDGEPMTLAYADSLLFHILKAVPSAFNRFNVMLFKINYGSEVAQQKGSLLTLE 639

Query:   277 MGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKSTNGKTTLLY 336
                NELR R +F+KLLEAILKAGN+MNAGT+RGNAQ FNL+ALRKLSDVKS + KTTLL+
Sbjct:   640 SACNELRARGLFMKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSVDAKTTLLH 699

Query:   337 FVVEQ 341
             FVVE+
Sbjct:   700 FVVEE 704
GO:0003779 "actin binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0016043 "cellular component organization" evidence=IEA
GO:0030036 "actin cytoskeleton organization" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2020568 FH8 "formin 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172129 Fh5 "formin homology5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079807 AT3G05470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156248 AT5G48360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094493 AFH1 "formin homology 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158576 FH6 "formin homolog 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043989 AT2G43800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079711 AT3G07540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2R292 DAAM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016175001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (772 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query492
pfam02181372 pfam02181, FH2, Formin Homology 2 Domain 1e-87
smart00498392 smart00498, FH2, Formin Homology 2 Domain 5e-70
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 0.004
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain Back     alignment and domain information 
 Score =  273 bits (699), Expect = 1e-87
 Identities = 130/379 (34%), Positives = 205/379 (54%), Gaps = 36/379 (9%)

Query: 111 HVKLKSLHWDKVATNVDHSMVWNEINDGSLRFDDE--QIENLFGYSTINRRLYERSKTSM 168
             KLK LHWDKV    D   VW+E+++ S   D +  ++E LF      ++  +  K S 
Sbjct: 8   KKKLKPLHWDKVNPAQDRGTVWDELDEESFEKDLDLSELEELFSAKAKKKKSKKSEKKSS 67

Query: 169 SSGSSNAAPTAELFILEPRKCQNTAIVLRSLAISQKEIIEALL--DGQGLSIDILEKLAK 226
           S          E+ +L+P++ QN AI+LR L +  +EI++A+L  D   L +++LE L K
Sbjct: 68  SKKKKK-----EISVLDPKRSQNIAILLRKLKLPPEEIVQAILEMDESVLGLELLENLLK 122

Query: 227 LSSSQDD----------------ANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKE 270
           ++ ++++                A  FL  + K IP    R+ A+LF+S ++ E+ +LK 
Sbjct: 123 MAPTKEELKKLKEYKGDPSKLGRAEQFLLELSK-IPRLEERLEALLFKSTFEEEVEELKP 181

Query: 271 SLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKSTNG 330
           SL+ LE    ELR    F KLLE IL  GN MN+GT RGNA+ F LS+L KLSD KST+ 
Sbjct: 182 SLETLEAASEELRESRKFKKLLELILALGNYMNSGTRRGNAKGFKLSSLLKLSDTKSTDN 241

Query: 331 KTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIW 390
           KTTLL+++V     K ++++LP +   S+E ++V KA +++L+        L   + ++ 
Sbjct: 242 KTTLLHYLV-----KIIREKLPDLLDFSSELSHVEKAAKVDLEQLEKDVKELEKGLKKLE 296

Query: 391 ELVTHCASSE--KGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEK 448
             +   A  E     F+++MK  LEE +E+L  + +     MEL K  T+Y+   G   K
Sbjct: 297 RELELSALDEHPDDKFVEKMKEFLEEAEEKLDKLESLLKEAMELFKELTEYF---GEDPK 353

Query: 449 WGHPLQLFVIVKEFLDMVD 467
              P + F I+++FL M  
Sbjct: 354 ETSPEEFFKILRDFLRMFK 372

Length = 372
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 492
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 100.0
smart00498432 FH2 Formin Homology 2 Domain. FH proteins control 100.0
PF02181370 FH2: Formin Homology 2 Domain; InterPro: IPR015425 100.0
KOG1925 817 consensus Rac1 GTPase effector FHOS [Signal transd 100.0
KOG1923830 consensus Rac1 GTPase effector FRL [Signal transdu 100.0
KOG1922833 consensus Rho GTPase effector BNI1 and related for 100.0
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 99.22
KOG1923 830 consensus Rac1 GTPase effector FRL [Signal transdu 95.99
smart00498432 FH2 Formin Homology 2 Domain. FH proteins control 95.95
PRK153192039 AIDA autotransporter-like protein ShdA; Provisiona 94.5
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 93.31
PHA032473151 large tegument protein UL36; Provisional 91.71
KOG2675480 consensus Adenylate cyclase-associated protein (CA 89.33
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 89.32
PRK097521250 adhesin; Provisional 88.65
KOG4672487 consensus Uncharacterized conserved low complexity 88.33
KOG4590409 consensus Signal transduction protein Enabled, con 83.78
PF15195116 TMEM210: TMEM210 family 82.87
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 80.47
PRK10132108 hypothetical protein; Provisional 80.21
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=8.4e-70  Score=569.32  Aligned_cols=355  Identities=24%  Similarity=0.384  Sum_probs=320.0

Q ss_pred             cccccccccccccccccc-cCCCccccccCCCCcccC--hHHHHHhhccccccccccccccccCCCCCCCCCCCcceecc
Q 037051          108 VVGHVKLKSLHWDKVATN-VDHSMVWNEINDGSLRFD--DEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAELFIL  184 (492)
Q Consensus       108 ~~p~~~lk~l~W~ki~~~-~~~~TiW~~l~~~~~~lD--~~~lE~lF~~~~~~~~~~~~~~~~~s~~~~~~~k~~~i~lL  184 (492)
                      +.|.++|++++|.+|.+. ...+++|.+++++++.-|  +..|+..|+.+...++....   ...+++..+++.+...||
T Consensus       620 ~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~---~eekkt~~kKk~kel~il  696 (1102)
T KOG1924|consen  620 YKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEG---GEEKKTGTKKKVKELRIL  696 (1102)
T ss_pred             CCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccc---cccccchhhhhhhhheec
Confidence            556778999999999654 458899999999877543  46888889987554433221   111222235667788999


Q ss_pred             chhhHHHHHHHHhhcCCCHHHHHHHHH--hCCCCCHHHHHHHHhhCCCc----------------chHhHHHHHHHhhhc
Q 037051          185 EPRKCQNTAIVLRSLAISQKEIIEALL--DGQGLSIDILEKLAKLSSSQ----------------DDANTFLFHILKVIP  246 (492)
Q Consensus       185 D~kRaqNi~I~L~~lk~s~~ei~~ail--d~~~L~~e~l~~L~~~~Pt~----------------~~aE~Fl~~ll~~ip  246 (492)
                      |+|.+||++|+|++|++++++|+.+|+  |+++|+...|++|++.+|..                .+.|||...| ..|+
T Consensus       697 DsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm-~~vk  775 (1102)
T KOG1924|consen  697 DSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVM-SQVK  775 (1102)
T ss_pred             chHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHH-hhcc
Confidence            999999999999999999999999999  67899999999999999976                4789999988 5899


Q ss_pred             cHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccchhhhcccccc
Q 037051          247 SAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVK  326 (492)
Q Consensus       247 ~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~sL~KL~d~K  326 (492)
                      ++.-||.+++|+.+|.+.+++|++.+..+..||++||+|++|.++|++||.+|||||+|+.+.+|+||.+++|.||.|||
T Consensus       776 rL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTK  855 (1102)
T KOG1924|consen  776 RLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTK  855 (1102)
T ss_pred             ccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCch
Q 037051          327 STNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCAS--SEKGGF  404 (492)
Q Consensus       327 s~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~--~e~d~f  404 (492)
                      ++|+++||||||++.++++|     |+++.|.+||.||.+|++|+.+.|...+..++..++.++.-+..+..  .+.|.|
T Consensus       856 saDqk~TLLHfLae~~e~ky-----pd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF  930 (1102)
T KOG1924|consen  856 SADQKTTLLHFLAEICEEKY-----PDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKF  930 (1102)
T ss_pred             ccchhhHHHHHHHHHHHHhC-----hhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhH
Confidence            99999999999999999876     99999999999999999999999999999999999999998887642  356999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 037051          405 LKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADIS  474 (492)
Q Consensus       405 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~  474 (492)
                      .++|..|.++|..++..|...+..+++.|+.+.+||..|+++   .+.++||+.+++|-++|..|.+|+.
T Consensus       931 ~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kk---ysmEEFFaDi~tFrnaf~ea~~en~  997 (1102)
T KOG1924|consen  931 VEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKK---YSMEEFFADIRTFRNAFLEAVAENE  997 (1102)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCccc---CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988   6799999999999999999999985

>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms] Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PRK09752 adhesin; Provisional Back     alignment and domain information
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown] Back     alignment and domain information
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms] Back     alignment and domain information
>PF15195 TMEM210: TMEM210 family Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PRK10132 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query492
2z6e_A419 Crystal Structure Of Human Daam1 Fh2 Length = 419 7e-22
2j1d_G483 Crystallization Of Hdaam1 C-Terminal Fragment Lengt 8e-22
3o4x_E467 Crystal Structure Of Complex Between Amino And Carb 3e-16
3obv_E457 Autoinhibited Formin Mdia1 Structure Length = 457 3e-15
1v9d_A340 Crystal Structure Of The Core Fh2 Domain Of Mouse M 2e-14
4eah_A402 Crystal Structure Of The Formin Homology 2 Domain O 3e-11
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419 Back     alignment and structure 
Iteration: 1

 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 144/296 (48%), Gaps = 38/296 (12%)
Query: 114 LKSLHWDKVATNVDHSMVWNEINDGSLR--FDDEQIENLF-GYST-----INRRLYERSK 165
           LKS +W K+  N     VW EI+D  +    D E +E  F  Y       +N    ++  
Sbjct: 17  LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEA 76
Query: 166 TSMSSGSSNAAPTAELFILEPRKCQNTAIVLRSLAISQKEIIEALL---DGQGLSIDILE 222
            ++    S+     EL +++ R+ QN  I+L  L +S  EI  A+L   + + L  D+LE
Sbjct: 77  DAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLE 136
Query: 223 KLAKLSSSQDD----------------ANTFLFHILKVIPSAFTRVNAMLFRSNYKSEIL 266
           +L K    + D                A+ FLF + + I     R+ ++ F+  +   + 
Sbjct: 137 QLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSR-INHYQQRLQSLYFKKKFAERVA 195
Query: 267 QLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVK 326
           ++K  ++A+  G  E+       +LLE +L  GN MN G  RGNA  F +S+L K++D K
Sbjct: 196 EVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSLNKIADTK 254
Query: 327 STNGKT-TLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRI---ELDTFINT 378
           S+  K  TLL++++   +NKY     P+V  L+ E  ++ +A ++   ELD  I+T
Sbjct: 255 SSIDKNITLLHYLITIVENKY-----PSVLNLNEELRDIPQAAKVNMTELDKEIST 305
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483 Back     alignment and structure
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467 Back     alignment and structure
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457 Back     alignment and structure
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340 Back     alignment and structure
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query492
3obv_E457 Protein diaphanous homolog 1; autoinhibition, acti 9e-76
2j1d_G483 DAAM1, disheveled-associated activator of morphoge 4e-72
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 3e-63
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 7e-53
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457 Back     alignment and structure
 Score =  244 bits (624), Expect = 9e-76
 Identities = 83/392 (21%), Positives = 162/392 (41%), Gaps = 32/392 (8%)

Query: 112 VKLKSLHWDKV-ATNVDHSMVWNEINDGSLRFDDE--QIENLFGYSTINRRLYERSKTSM 168
           V+L+  +W K  A ++     W ++ +     ++   ++   F   T   +  +  +   
Sbjct: 8   VQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGE 67

Query: 169 SSGSSNAAPTAELFILEPRKCQNTAIVLRSLAISQKEIIEALL--DGQGLSIDILEKLAK 226
              S       EL +L+ +  QN +I L S  +  +EI   +L  +   L+  +++ L K
Sbjct: 68  EKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIK 127

Query: 227 LSSSQDD----------------ANTFLFHILKVIPSAFTRVNAMLFRSNYKSEILQLKE 270
                +                 +  F   +   +P    R+NA+LF+  +  ++  +K 
Sbjct: 128 QMPEPEQLKMLSELKEEYDDLAESEQFGVVMGT-VPRLRPRLNAILFKLQFSEQVENIKP 186

Query: 271 SLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALRKLSDVKSTNG 330
            + ++     ELR    F  LLE  L  GN MNAG+    A  FN+S L KL D KS + 
Sbjct: 187 EIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQ 246

Query: 331 KTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIW 390
           K TLL+F+ E  +N +     P V    +E  +V KA R+  +    +   +  ++ ++ 
Sbjct: 247 KMTLLHFLAELCENDH-----PEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVE 301

Query: 391 ELVTHCAS--SEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEK 448
             V +  +   EK  F+++M   +++ +E+   +R   +    L K    Y+     K  
Sbjct: 302 RDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLS 361

Query: 449 WGHPLQLFVIVKEFLDMVDTVCADISRNLQKK 480
                + F+ +  F +M      +  +  + +
Sbjct: 362 ---VEEFFMDLHNFRNMFLQAVKENQKRRETE 390
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483 Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340 Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query492
4eah_A402 Formin-like protein 3, actin, alpha skeletal muscl 100.0
2j1d_G483 DAAM1, disheveled-associated activator of morphoge 100.0
3obv_E457 Protein diaphanous homolog 1; autoinhibition, acti 100.0
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 100.0
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 100.0
4hpq_C413 ATG17, KLTH0D15642P; autophagy, protein transport; 87.25
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=3.3e-71  Score=577.07  Aligned_cols=352  Identities=22%  Similarity=0.343  Sum_probs=310.3

Q ss_pred             CCcccccccccccccccccccccCCCccccccCCCCc--ccChHHHHHhhccccccccccccccccCCCCCCCCCCCcce
Q 037051          104 SSRTVVGHVKLKSLHWDKVATNVDHSMVWNEINDGSL--RFDDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAEL  181 (492)
Q Consensus       104 ~~~~~~p~~~lk~l~W~ki~~~~~~~TiW~~l~~~~~--~lD~~~lE~lF~~~~~~~~~~~~~~~~~s~~~~~~~k~~~i  181 (492)
                      +..+..|+.+||++||++|+++.+++|||+++++..+  .+|+++||++|+.+......    +...++....+++++.|
T Consensus         9 ~Kk~~~~k~kmk~l~W~kl~~~~i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~----~~~~~k~k~~~k~~~~v   84 (402)
T 4eah_A            9 IKKPIKTKFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPAL----DLICSKNKTAQKAASKV   84 (402)
T ss_dssp             -CCCCCCSSCCCCCCCCEECHHHHTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC------------------------CB
T ss_pred             CCCCCCCCCCCCCcCceeCChHhccCccccCCchhhhccccCHHHHHHHHhhcccCCcc----ccchhcccccccCCCce
Confidence            3445678899999999999989999999999998876  68999999999976432110    11111111223456789


Q ss_pred             eccchhhHHHHHHHHhhcCCCHHHHHHHHH--hCCCCCHHHHHHHHhhCCCc-------------------chHhHHHHH
Q 037051          182 FILEPRKCQNTAIVLRSLAISQKEIIEALL--DGQGLSIDILEKLAKLSSSQ-------------------DDANTFLFH  240 (492)
Q Consensus       182 ~lLD~kRaqNi~I~L~~lk~s~~ei~~ail--d~~~L~~e~l~~L~~~~Pt~-------------------~~aE~Fl~~  240 (492)
                      +|||+||+|||+|+|++|++++++|++||+  |.+.|+.|.|+.|++++||+                   +++|||+++
T Consensus        85 ~lLd~kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~  164 (402)
T 4eah_A           85 TLLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLL  164 (402)
T ss_dssp             CSSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHH
T ss_pred             eeCCHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhccHHHHHHHH
Confidence            999999999999999999999999999998  67799999999999999997                   479999999


Q ss_pred             HHhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCCCCCCcccccchhhh
Q 037051          241 ILKVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAGTSRGNAQRFNLSALR  320 (492)
Q Consensus       241 ll~~ip~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~LN~g~~rg~A~GFkL~sL~  320 (492)
                      |+ .||+|..||+||+|+.+|++.+.++.+.|..+..||++|++|..|+.||++||++|||||+| .||+|+||+|++|.
T Consensus       165 l~-~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~  242 (402)
T 4eah_A          165 FS-KVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKLQSLD  242 (402)
T ss_dssp             HH-HSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGG
T ss_pred             HH-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhccCC-CCCccceeeHHHHH
Confidence            85 89999999999999999999999999999999999999999999999999999999999998 79999999999999


Q ss_pred             ccccccCCCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 037051          321 KLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSALASRVVEIWELVTHCASSE  400 (492)
Q Consensus       321 KL~d~Ks~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~L~~~l~~i~~~l~~~~~~e  400 (492)
                      ||.|||++|+++||||||+++++++     +|++++|.+||.+|.+|++|++++|.+++++|++++..+++++...    
T Consensus       243 KL~d~Ks~d~k~TLLh~l~~~~~~~-----~p~l~~f~~eL~~v~~Aa~v~~~~l~~d~~~L~~~l~~~~~e~~~~----  313 (402)
T 4eah_A          243 LLLDTKSTDRKMTLLHFIALTVKEK-----YPELANFWQELHFVEKAAAVSLENVLLDVKELGRGMELIRRECSIH----  313 (402)
T ss_dssp             SSSSSBCTTSSSBHHHHHHHHHHHH-----CGGGGTCSTTCCSHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred             HHHhccCCCCCccHHHHHHHHHHhh-----hHHHHHHhhhhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence            9999999999999999999998765     4999999999999999999999999999999999999998877532    


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhchHHHHHHHHHHHHHHHHHHHHH
Q 037051          401 KGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRN  476 (492)
Q Consensus       401 ~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~efF~~l~~F~~~f~~a~~e~~r~  476 (492)
                       |  ...|..|+..|..++..|+..+.++.+.|.+++.|||||+++   .++++||++|.+|+..|++|++||+++
T Consensus       314 -d--~~~l~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgedpk~---~~~~~fF~~~~~F~~~fk~A~~en~~r  383 (402)
T 4eah_A          314 -D--NSVLRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKT---TPPSVFFPVFVRFIRSYKEAEQENEAR  383 (402)
T ss_dssp             -C--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT---CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1  248999999999999999999999999999999999999876   579999999999999999999999654
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Back     alignment and structure
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Back     alignment and structure
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 492
d1ux5a_411 a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces 9e-52
d1v9da_332 a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 6e-51
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411 Back     information, alignment and structure

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  178 bits (453), Expect = 9e-52
 Identities = 69/421 (16%), Positives = 144/421 (34%), Gaps = 74/421 (17%)

Query: 112 VKLKSLHWDKVATNVDHSMVWNEINDGSL------RFDDEQIENLFGYSTINRRLYERSK 165
            KLK LHW+K+    D+S +W              +     +E  F            ++
Sbjct: 7   KKLKQLHWEKL-DCTDNS-IWGTGKAEKFADDLYEKGVLADLEKAFA-----------AR 53

Query: 166 TSMSSGSSNAAPTAELFILEPRKCQNTAIVLRSLA-ISQKEIIEALLDG----------- 213
              S  S       ++  L     Q   I L   + +S  ++++ +L+            
Sbjct: 54  EIKSLASKRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVV 113

Query: 214 --------QGLSIDILEKLAKLS-------------------SSQDDANTFLFHILKVIP 246
                     +S+++    A  S                   +    A+     ++  + 
Sbjct: 114 EFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLE 173

Query: 247 SAFT-RVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNKMNAG 305
           S +  R+ A+   ++Y+ E  +L   L+ ++   + L+       +   IL  GN MN  
Sbjct: 174 SYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDT 233

Query: 306 TSRGNAQRFNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVN 365
                AQ F LS L++L+ +K T    T L +V      K ++   P+     +E   V 
Sbjct: 234 --SKQAQGFKLSTLQRLTFIKDTTNSMTFLNYVE-----KIVRLNYPSFNDFLSELEPVL 286

Query: 366 KAVRIELDTFINTYSALASRVVEIWELVTHCASSEK------GGFLKEMKGLLEECKEEL 419
             V++ ++  +N     +  +V +   V     S+          L +   +L E +++ 
Sbjct: 287 DVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKG 346

Query: 420 KLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQLFVIVKEFLDMVDTVCADISRNLQK 479
            L+ ++   T+   +     Y  G         +  F    +F++      A      ++
Sbjct: 347 DLLEDEVKLTIMEFESLMHTY--GEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEE 404

Query: 480 K 480
           +
Sbjct: 405 E 405
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query492
d1ux5a_411 Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
d1v9da_332 Diaphanous protein homolog 1, dia1 {Mouse (Mus mus 100.0
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-64  Score=528.01  Aligned_cols=349  Identities=18%  Similarity=0.262  Sum_probs=304.7

Q ss_pred             cccccccccccccccccccCCCccccccCCCCc------ccChHHHHHhhccccccccccccccccCCCCCCCCCCCcce
Q 037051          108 VVGHVKLKSLHWDKVATNVDHSMVWNEINDGSL------RFDDEQIENLFGYSTINRRLYERSKTSMSSGSSNAAPTAEL  181 (492)
Q Consensus       108 ~~p~~~lk~l~W~ki~~~~~~~TiW~~l~~~~~------~lD~~~lE~lF~~~~~~~~~~~~~~~~~s~~~~~~~k~~~i  181 (492)
                      |.|+.+||++||++|+.  .++|||+++.+..+      .+|+++||++|+.+.........           ..+++.+
T Consensus         3 PkP~~klK~l~W~ki~~--~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~~~~-----------~~~~~~~   69 (411)
T d1ux5a_           3 PRPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKR-----------KEDLQKI   69 (411)
T ss_dssp             CCCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHHH-----------HHTTTSB
T ss_pred             CCCCCCCCCCCceeCCC--CCCCcchhcccccchhHHHhhhhHHHHHHHhccCCCCCCcccc-----------ccccccc
Confidence            45678999999999953  46899999865332      46778999999976543222111           1345679


Q ss_pred             eccchhhHHHHHHHHhhc-CCCHHHHHHHHH--hCCCCCHHHHHH--------------HHhhCCCc-------------
Q 037051          182 FILEPRKCQNTAIVLRSL-AISQKEIIEALL--DGQGLSIDILEK--------------LAKLSSSQ-------------  231 (492)
Q Consensus       182 ~lLD~kRaqNi~I~L~~l-k~s~~ei~~ail--d~~~L~~e~l~~--------------L~~~~Pt~-------------  231 (492)
                      +|||+||+|||+|+|++| ++++++|++||+  |...|+.+.+..              |.+++||.             
T Consensus        70 ~lLd~kr~qni~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~  149 (411)
T d1ux5a_          70 TFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAK  149 (411)
T ss_dssp             CCSCHHHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCC
T ss_pred             ccCcHHHHHHHHHHHHHccCCCHHHHHHHHHhcChhhcCHHHHHHHHhhcchhhhHHHHHHHhCCCcHHHHHHHHHHhhc
Confidence            999999999999999999 699999999998  455777666654              45789985             


Q ss_pred             ---------chHhHHHHHHH-hhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHhccc
Q 037051          232 ---------DDANTFLFHIL-KVIPSAFTRVNAMLFRSNYKSEILQLKESLQALEMGYNELRTRVIFLKLLEAILKAGNK  301 (492)
Q Consensus       232 ---------~~aE~Fl~~ll-~~ip~~~~RL~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGN~  301 (492)
                               +.+|+|+++|+ +.||++..||+||+|+.+|++.+.++.+.+..+..||++|++|..|+.+|++||++|||
T Consensus       150 ~~~~d~~~L~~~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~  229 (411)
T d1ux5a_         150 PPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNF  229 (411)
T ss_dssp             CCSSCSTTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cccCChhhcCHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhhh
Confidence                     67899999985 24899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCcccccchhhhccccccCCCCCchHHHHHHHHHHhhhhhcccccccccccccccHHHHhccCHHHHHHHHHH
Q 037051          302 MNAGTSRGNAQRFNLSALRKLSDVKSTNGKTTLLYFVVEQRDNKYLKQRLPAVEGLSNEFNNVNKAVRIELDTFINTYSA  381 (492)
Q Consensus       302 LN~g~~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLh~lv~~ve~~~~~~~~p~l~~~~~eL~~v~~As~v~~~~l~~~i~~  381 (492)
                      ||+|+  |+|+||+|++|.||.++|++|+++||||||++++++.     +|++++|.+||.+|..|++++++++.++++.
T Consensus       230 lN~g~--~~A~GFkL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~-----~p~l~~~~~el~~v~~a~~~~~~~l~~~~~~  302 (411)
T d1ux5a_         230 MNDTS--KQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLN-----YPSFNDFLSELEPVLDVVKVSIEQLVNDCKD  302 (411)
T ss_dssp             HSCGG--GCCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHH-----CGGGGGHHHHTHHHHHHTTCCHHHHHHHHHH
T ss_pred             hcCCC--CCcceeehHHHHHhhhccCCCCCeeHHHHHHHHHHHh-----CcHhhccHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99984  6899999999999999999999999999999998765     4899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhch
Q 037051          382 LASRVVEIWELVTHCAS------SEKGGFLKEMKGLLEECKEELKLVRNDQNRTMELVKRTTKYYQAGGSKEKWGHPLQL  455 (492)
Q Consensus       382 L~~~l~~i~~~l~~~~~------~e~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~~~~yFgEd~~~~~~~~p~ef  455 (492)
                      |.+++..++++++....      +.+|.|...|.+|++.|+.++..++..+.++.+.|++++.||||+++.  ...+++|
T Consensus       303 L~~~l~~i~~~~~~~~~~~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~~yfGEd~~~--~~~~~~f  380 (411)
T d1ux5a_         303 FSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGD--KFAKISF  380 (411)
T ss_dssp             HHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSC--HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCCHHHH
Confidence            99999999999876532      245899999999999999999999999999999999999999999864  2468999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 037051          456 FVIVKEFLDMVDTVCADISRNLQ  478 (492)
Q Consensus       456 F~~l~~F~~~f~~a~~e~~r~~~  478 (492)
                      |++|.+|+.+|++|++|+.++.+
T Consensus       381 F~~~~~F~~~~~~a~~en~~~~e  403 (411)
T d1ux5a_         381 FKKFADFINEYKKAQAQNLAAEE  403 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999865533
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure