Citrus Sinensis ID: 037085

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTRWPIETRNVLLMVVVTIAAAFFTVTCNLPDSFLKEDTLA
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccHccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLevdnslmiplhraaleGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRkehlftwkdkegntvlHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCnansqdsvFKEIGWIIQRAVAqqspqlpdagsanvswnqtrwpietRNVLLMVVVTIAAAFFTVTcnlpdsflkedtla
Flexible Loop (DISEMBL)
MARLWPQLAsiknqrgetTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHlftwkdkegntvlHLATLNKLKQIVELLirensnrriMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTRWPIETRNVLLMVVVTIAAAFFTVtcnlpdsflkedtla
Low Complexity Region (SEG)
MARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTRWPIETRNVLLMvvvtiaaafftvtCNLPDSFLKEDTLA
Disordered region (IsUnstruct)
*********************LLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT****TALHLAV*********ALV*******KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQ**********ANVSWNQTRWPIETRNVLLMVVVTIAAAFFTVTCNLPDSF*******
Disordered Region (DISOPRED)
*ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRA*************************ETRNVLLMVVVTIAAAFFTVTCNL***********
Disordered Region (DISEMBL)
MARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTRWPIETRNVLLMVVVTIAAAFFTVTCNLPDSFLKEDTLA
Disordered Region (DISPRO)
*A**WPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTRWPIETRNVLLMVVVTIAAAFFTVTCNLPDSFLK*****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTRWPIETRNVLLMVVVTIAAAFFTVTCNLPDSFLKEDTLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.612	0.290	0.271	2e-10
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.637	0.267	0.285	4e-09
B2RXR6	993	Serine/threonine-protein	yes	no	0.633	0.158	0.271	5e-07
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.637	0.296	0.244	6e-07
P20749	454	B-cell lymphoma 3 protein	yes	no	0.596	0.325	0.278	9e-07
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.576	0.072	0.261	1e-06
Q54KA7	986	Ankyrin repeat, PH and SE	no	no	0.629	0.158	0.268	1e-06
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	no	0.536	0.094	0.271	3e-06
Q9Z2F6	448	B-cell lymphoma 3 protein	no	no	0.596	0.330	0.284	4e-06
Q8N8A2	993	Serine/threonine-protein	no	no	0.608	0.152	0.260	5e-06

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 10/162 (6%)

Query: 8   LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIR 67
           LA  K + G    H+ + +G+ +++ +  E N EL    D+S    LH AA +G  +++ 
Sbjct: 83  LAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVC 142

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVL 127
            L+    +      SNG+TALH A +   +   + L++     +K  + T  DK+G T L
Sbjct: 143 FLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIE-----KKAGMVTRVDKKGQTAL 197

Query: 128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
           H+A   +  +IV++L+  + +      IN+ + +G T L + 
Sbjct: 198 HMAVKGQNTEIVDVLMEADGS-----LINSADNKGNTPLHIA 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 49/207 (23%)

Query: 12  KNQRGETTMHLLSTDG-----------DARMVRIFGENN----------------RELCL 44
           KN+ G   +H+ +  G           DA + + FG +N                 +L  
Sbjct: 160 KNRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLS 219

Query: 45  EVDNSLMI-------PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS 97
           +  N L I        LH AA +G  +VI+AL+S  P+   ++   G+TALH+AVK   S
Sbjct: 220 KAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSS 279

Query: 98  DAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR-ENSNRRIMIRIN 156
           +  + L+D   +     +    DK  NT LH+AT  K  +IVELL+   ++N       N
Sbjct: 280 EVVKLLLDADPA-----IVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTN------AN 328

Query: 157 TVNKQGQTALQLCNA---NSQDSVFKE 180
           T+ +  +TAL +      + + S  KE
Sbjct: 329 TLTRDHKTALDIAEGLPLSEESSYIKE 355

Arabidopsis thaliana (taxid: 3702)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 20/177 (11%)

Query: 4   LWPQLASI--KNQRGETTMHLLSTDGDA----RMVRIFGENNRELCLEVDNSLMIPLHRA 57
           L  Q ASI  K+ RG T +H  +  G A     +++I   +  + CL+ DN    PLH A
Sbjct: 722 LLEQEASILCKDSRGRTPLHYAAARGHATWLNELLQI-ALSEEDCCLK-DNQGYTPLHWA 779

Query: 58  ALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFT 117
              G+ + I  L+    +   K   N  T LH A+          L+          + +
Sbjct: 780 CYNGNENCIEVLLE--QKCFRKFIGNPFTPLHCAIINGHESCASLLLGAIDP----SIVS 833

Query: 118 WKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQ 174
            +D +G T LH A      + ++LL+R ++      ++N V+  G+TAL +   N Q
Sbjct: 834 CRDDKGRTTLHAAAFGDHAECLQLLLRHDA------QVNAVDNSGKTALMMAAENGQ 884

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 10/168 (5%)

Query: 3   RLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGD 62
           RLWP+L  I +    + ++  +      +V    + +    + V  +    LH A   G 
Sbjct: 115 RLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGL 174

Query: 63  SDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKE 122
             +++AL+      +      G+TALH+AVK    +  + ++    +     +   +D++
Sbjct: 175 LRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYT-----ILNERDRK 229

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCN 170
           GNT LH+AT     QI  LL+   +     I +N +N Q +TA+ L +
Sbjct: 230 GNTALHIATRKARPQITSLLLTFTA-----IEVNAINNQKETAMDLAD 272

Arabidopsis thaliana (taxid: 3702)

>sp|P20749|BCL3_HUMAN B-cell lymphoma 3 protein OS=Homo sapiens GN=BCL3 PE=1 SV=2

 Score = 54.3 bits (129), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 17/165 (10%)

Query: 8   LASIKNQRGETTMHLLSTDGD----ARMVRIFGENNRELCLEVDNSL-MIPLHRAALEGD 62
           +A+  ++ G+T +H+    G+     R+V +F +  REL  ++ N+L   PLH A +   
Sbjct: 127 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPLHLAVITTL 184

Query: 63  SDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKE 122
             V+R LV+    S   L  +G+TA HLA +       +AL+D A     +     ++ +
Sbjct: 185 PSVVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD--LEARNYD 241

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KQGQTAL 166
           G T LH+A   + ++ V+LL+   ++      I+ V+ K G++ L
Sbjct: 242 GLTALHVAVNTECQETVQLLLERGAD------IDAVDIKSGRSPL 280

Contributes to the regulation of transcriptional activation of NF-kappa-B target genes. In the cytoplasm, inhibits the nuclear translocation of the NF-kappa-B p50 subunit. In the nucleus, acts as transcriptional activator that promotes transcription of NF-kappa-B target genes. Contributes to the regulation of cell proliferation.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 14/157 (8%)

Query: 13  NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSI 72
           N RGET +H+ +  G A +VR   ++  ++  +  +    PLH +A  G +D+++ L+  
Sbjct: 446 NVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDD-QTPLHISARLGKADIVQQLLQQ 504

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATL 132
              S    T++G T LHLA ++   D    L+D   S       +   K+G T LH+A  
Sbjct: 505 G-ASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGAS------LSITTKKGFTPLHVAAK 557

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
               ++  LL++++++       +   K G T L + 
Sbjct: 558 YGKLEVASLLLQKSASP------DAAGKSGLTPLHVA 588

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 23/179 (12%)

Query: 4   LWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDS 63
           L P +   ++ R  T++HL + +G   MV +      ++ ++ D     PLH+A+  G S
Sbjct: 323 LDPTMIDCRDSRQSTSLHLAAFNGLLDMVDLLIRYKAQINIK-DEEGATPLHKASFNGHS 381

Query: 64  DVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWK 119
              + LV     IC      + S G T LH A    RS     L+      R       K
Sbjct: 382 SCAKLLVDKGAPIC-----IVDSQGATPLHKAAFNGRSKCLATLI------RSGAELEVK 430

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCN-ANSQDSV 177
           D +G T LH A  N       +L+++ +N      +N V+    T L L + A ++D+V
Sbjct: 431 DSQGGTPLHNAAYNGHSDCCRILLKKGAN------VNAVDTHSSTPLHLASAAGARDTV 483

Dictyostelium discoideum (taxid: 44689)

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVS 71
           K   G T +H  +  G A + R+      ++  E  NS M P+H A   G  +++R L+ 
Sbjct: 799 KTNSGVTPLHFAAGLGKANIFRLLLSRGADIKAEDINSQM-PIHEAVSNGHLEIVRILIE 857

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLAT 131
             P  +       E   +LAV+K   D F   V       K+      D  GNT+LHL +
Sbjct: 858 KDPSLMNVKNIRNEYPFYLAVEKRYKDIFDYFVS------KDANVNEVDHNGNTLLHLFS 911

Query: 132 LNKLKQIVELLIRENSNRRI 151
                ++V+ L++  +N R+
Sbjct: 912 STGELEVVQFLMQNGANFRL 931

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q9Z2F6|BCL3_MOUSE B-cell lymphoma 3 protein homolog OS=Mus musculus GN=Bcl3 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 17/165 (10%)

Query: 8   LASIKNQRGETTMHLLSTDGD----ARMVRIFGENNRELCLEVDNSL-MIPLHRAALEGD 62
           +A+  ++ G+T +H+     +     R++ +F   +RE+  +V N+L   PLH A +   
Sbjct: 122 MATRVDEDGDTPLHIAVVQNNIAAVYRILSLFKLGSREV--DVHNNLRQTPLHLAVITTL 179

Query: 63  SDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKE 122
            D++R LV+    S   L  +G+TA+HLA +       QAL+D A S   +     ++ E
Sbjct: 180 PDMVRLLVTAG-ASPMALDRHGQTAIHLACEHRSPSCLQALLDSATSGSVD--LEVRNYE 236

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KQGQTAL 166
           G T LH+A     ++ V LL+   ++      I+ V+ K G++ L
Sbjct: 237 GLTALHVAVNTGCQEAVLLLLERGAD------IDAVDIKSGRSPL 275

Contributes to the regulation of transcriptional activation of NF-kappa-B target genes. In the cytoplasm, inhibits the nuclear translocation of the NF-kappa-B p50 subunit (By similarity). In the nucleus, acts as transcriptional activator that promotes transcription of NF-kappa-B target genes. Contributes to the regulation of cell proliferation.

Mus musculus (taxid: 10090)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 14/165 (8%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGEN--NRELCLEVDNSLMIPLHRAALEGDSDVIRAL 69
           K+ RG T +H  +  G A  +    +   + E C   DN    PLH A   G+ + I  L
Sbjct: 732 KDSRGRTPLHYAAARGHATWLSELLQMALSEEDCCFKDNQGYTPLHWACYNGNENCIEVL 791

Query: 70  VSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHL 129
           +    +   K   N  T LH A+     +    L+    S     + + +D +G T LH 
Sbjct: 792 LE--QKCFRKFIGNPFTPLHCAIINDHGNCASLLLGAIDS----SIVSCRDDKGRTPLHA 845

Query: 130 ATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQ 174
           A      + ++LL+R ++       +N V+  G+TAL +   N Q
Sbjct: 846 AAFADHVECLQLLLRHSA------PVNAVDNSGKTALMMAAENGQ 884

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
255539875	430	ankyrin repeat-containing protein, putat	0.939	0.541	0.403	6e-40
255539879	315	protein binding protein, putative [Ricin	0.701	0.552	0.401	3e-27
224114660	448	predicted protein [Populus trichocarpa]	0.951	0.526	0.306	8e-25
224136414	459	predicted protein [Populus trichocarpa]	0.641	0.346	0.362	1e-22
225447366	462	PREDICTED: ankyrin repeat-containing pro	0.733	0.393	0.392	2e-22
359490025	450	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.991	0.546	0.286	5e-20
255539939	320	ankyrin repeat-containing protein, putat	0.927	0.718	0.301	2e-19
225469107	430	PREDICTED: ankyrin repeat-containing pro	0.629	0.362	0.365	3e-19
359495749	460	PREDICTED: uncharacterized protein LOC10	0.685	0.369	0.340	4e-19
297739323	371	unnamed protein product [Vitis vinifera]	0.536	0.358	0.422	1e-18

>gi|255539875|ref|XP_002511002.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223550117|gb|EEF51604.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 143/243 (58%), Gaps = 10/243 (4%)

Query: 1   MARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALE 60
           +AR + Q   ++ Q G T +HL  + GD  +V +  + + ELC E D   MIPL  A   
Sbjct: 62  IARNYRQFLRVRYQEGYTALHLACSRGDLPLVELLLKLDSELCFEKDKFSMIPLQTAISF 121

Query: 61  GDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
           G ++VI  L++  PES+ KLT   ET  HLA K  +S AF+AL++E K  ++EHL   KD
Sbjct: 122 GYTEVISTLIAARPESVRKLTPQRETLFHLAAKHHQSSAFEALLEEVKKLKQEHLLHRKD 181

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKE 180
           ++GN VLH+A  NKL  IV+LL+  +   R M+R+NT+NK+  TAL +   NS+D   ++
Sbjct: 182 RQGNNVLHIAASNKLIGIVKLLLPAD---RAMVRVNTLNKKRLTALDVYYQNSKDISTRD 238

Query: 181 IGWIIQRAVAQQSPQLPDAGSANVSWNQTRWPIETRNVLLMVVVTIAAAFFTVTCNLPDS 240
           IG I+  A   +   LP            RW +ET+NV+L+V+  I  A FT  C+LP S
Sbjct: 239 IGRILCEAGGLEGRSLPMRA-------YIRWTLETKNVILVVLGIITGAAFTTVCSLPKS 291

Query: 241 FLK 243
           F++
Sbjct: 292 FVE 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539879|ref|XP_002511004.1| protein binding protein, putative [Ricinus communis] gi|223550119|gb|EEF51606.1| protein binding protein, putative [Ricinus communis]

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 112/192 (58%), Gaps = 18/192 (9%)

Query: 69  LVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLH 128
           LVS C ES+ K     ETALH+A+K  +   F+ LV+E K  ++E +   KD EGNTVLH
Sbjct: 52  LVSSCKESIAKENLQNETALHVALKSHQCRVFEVLVEEIKKLKQEEILNRKDDEGNTVLH 111

Query: 129 LATLNKLKQIVELLIRENSN-----RRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGW 183
           +A   KL +IV+LL+  + +      R ++R+NT+N++G+ AL + + N +D   + IG 
Sbjct: 112 IAAKYKLTEIVKLLLPSDCSTSTFTSRAVMRVNTLNRKGEIALDVYHQNGRDITSRGIGL 171

Query: 184 IIQRAVA-----------QQSPQLPDAGSANVSWNQTRWPIETRNVLLMVVVTIAAAFFT 232
           I+  A A           Q+S Q P      +   +  W +ETRNVLL+V+V IA A F 
Sbjct: 172 ILYEAGAVEGRLVRQIETQESLQSPLQDRDGIG--RPGWSLETRNVLLVVLVMIAGAAFG 229

Query: 233 VTCNLPDSFLKE 244
           +TCN+P  FLKE
Sbjct: 230 MTCNIPAVFLKE 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114660|ref|XP_002332335.1| predicted protein [Populus trichocarpa] gi|222832582|gb|EEE71059.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 25/261 (9%)

Query: 3   RLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGD 62
           RL P  A   NQ G + MH+ + +G   + +   E + +LC       M P H AA+ G 
Sbjct: 56  RLKPVFAIEVNQEGFSPMHIAADNGQVEIAKELMEVDIKLCRLEGRQKMTPFHHAAIRGR 115

Query: 63  SDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKE 122
           ++VI  ++S CP+ +E  T   E+ALHLAV+ +R +A + LVD  +   KE+L   KD++
Sbjct: 116 AEVISLMLSGCPDCIEDETERRESALHLAVRNNRFEAIKKLVDWIREMNKEYLLNMKDEQ 175

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIG 182
           GNTVLHLA+  K ++++E+ +   S     + +N +N  G TAL +      ++  +EI 
Sbjct: 176 GNTVLHLASWKKQRRVIEIFLGSGSASTGSLEVNAINHTGITALDVILLFPSEAGDREIV 235

Query: 183 WIIQRAVAQQS-----------------PQLPDAGSAN----VSWNQTR----WPIETRN 217
            I++ A A ++                 P  P+   +N    V + + +     P E R 
Sbjct: 236 EILRSAGAMRARDSVPSTVTNSQTSTDNPSTPERCWSNRDNLVEYFKFKKDRDSPSEARG 295

Query: 218 VLLMVVVTIAAAFFTVTCNLP 238
            LL++ V +A A F V    P
Sbjct: 296 TLLVIAVLVATATFQVGVGPP 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136414|ref|XP_002326854.1| predicted protein [Populus trichocarpa] gi|222835169|gb|EEE73604.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 95/160 (59%), Gaps = 1/160 (0%)

Query: 6   PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDV 65
           P  A   NQ G + +H+ S++G   +VR       ++CL        PLH AA++G  D+
Sbjct: 60  PAFARELNQDGFSPVHIASSNGHVELVRELLRVGYDICLLKGKDGKTPLHLAAMKGRVDI 119

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNT 125
           ++ LV  CP+S++++T  GET LH+AVK ++++A + L++E K      +  WKDK+GNT
Sbjct: 120 VKELVCACPQSVKEVTICGETVLHVAVKSNQAEAVKVLLEEIKKLDMMEIVNWKDKDGNT 179

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTA 165
           ++HLATL K  + + LLI   +     + +N++N  G TA
Sbjct: 180 IMHLATLRKQHETIRLLIGREA-IAYGVEVNSINASGFTA 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447366|ref|XP_002274771.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 4/186 (2%)

Query: 3   RLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELC-LEVDNSLMIPLHRAALEG 61
           RL P+++S  N+ G   +HL S +G   +VR       EL  L   +S   PLH AA+ G
Sbjct: 58  RLKPEISSSLNKDGFAAIHLASANGFVDIVRELLMVKHELGHLRCSDS-RTPLHLAAITG 116

Query: 62  DSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDK 121
            ++VIR L+ ICP S+E +T  GETA+HLAVK ++  A +ALV+  K    + L   KD+
Sbjct: 117 RTEVIRELLRICPASIEDVTVGGETAVHLAVKNNQLKALKALVESFKHSNIQDLLNAKDE 176

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEI 181
           +GNTVLHLAT  K    ++LL+ +       + +N  NK G T L L +   Q  +  E 
Sbjct: 177 DGNTVLHLATARKQGLTMKLLLGDGDMAAAAVDVNLTNKSGFTVLDLLDVVQQ--IVNEP 234

Query: 182 GWIIQR 187
           G  I R
Sbjct: 235 GDYILR 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490025|ref|XP_003634016.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 129/272 (47%), Gaps = 26/272 (9%)

Query: 1   MARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALE 60
           + RL P      NQ G + +H+ + +G   +V    + + + C         PLH AA++
Sbjct: 55  LIRLKPDFIKELNQDGFSPIHMAAANGHQEVVMELLKFDWKXCHLEGRDEKTPLHCAAMK 114

Query: 61  GDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
           G  +V+R ++S C E +E +T   E ALHLAVK S+ +A + LV++ +  R+E +   KD
Sbjct: 115 GKVNVVRVILSACKECIEDVTVQKEIALHLAVKNSQYEAVRVLVEKVREMRREDVLNMKD 174

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKE 180
           + GNT+LHLAT  K +Q   LL         +  +N +N  G TAL +      ++  +E
Sbjct: 175 EHGNTILHLATWRKQRQAKFLLGDATIPGSGVTEVNLMNNSGLTALDVLLIFPSEAGDRE 234

Query: 181 IGWIIQRAVAQ--QSPQLPDAGSANVS------------------WNQTRW------PIE 214
           I  I+  A A+  Q    P  G+ N +                   N  R+      P E
Sbjct: 235 IKEILHSAGAKRAQDIAFPPFGTQNHARLNSTTTVETCPMQPNNLVNYFRFHRGRDSPGE 294

Query: 215 TRNVLLMVVVTIAAAFFTVTCNLPDSFLKEDT 246
            R+ LL++ V +A A + V  + P    ++++
Sbjct: 295 ARSALLVIAVLVATATYQVGLSPPGGVWQDNS 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539939|ref|XP_002511034.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223550149|gb|EEF51636.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 9/239 (3%)

Query: 1   MARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALE 60
           + RL P+ A   NQ G + MH+ +T G   +VR   + +  LC         PLH AA++
Sbjct: 55  LLRLKPEFAQELNQDGYSPMHMAATIGHVEIVRELAKVDSRLCRVRGKQKKTPLHLAAIK 114

Query: 61  GDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
           G ++V   ++  CP+ +E +T  GETA+H AVK ++  A   LVD  +   +E +   KD
Sbjct: 115 GRAEVTSVMLMSCPDCIEDVTVRGETAVHQAVKNNQFHAVNVLVDWIRGTNREEMLNVKD 174

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKE 180
           + GNTVLHLA   K +Q  +LL+   + R  ++ +N  N  G T L L      ++   E
Sbjct: 175 ELGNTVLHLAAWKKQRQ-AKLLLGAATIRSGILEVNAKNNSGLTCLDLLLIFPSEAGDAE 233

Query: 181 IGWIIQRAVAQQSPQLPDAGSANVSW-NQTRWPIETRNVLLMVVVTIAAAFFTVTCNLP 238
           +  I++ A A Q+  +  +  ++  + NQ      T+       +T + +  + TC  P
Sbjct: 234 VIEILRGAGALQAKDISHSPISSFQYVNQITASTSTQ-------ITPSTSTASETCQTP 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469107|ref|XP_002269257.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 91/156 (58%)

Query: 13  NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSI 72
           NQ G + +HL + +G   +V +    + ELC       + PLH A+++G +D I  L+S 
Sbjct: 70  NQHGYSPIHLAAANGHVNVVEMLLGISHELCYLRGKGGLTPLHYASIKGRADTISLLLSS 129

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATL 132
            P  + + T  GETALH+AV+ ++ +A + LV+  K      +  WKD+EGNT+LHLA  
Sbjct: 130 SPLCVVEETERGETALHIAVRNNQLEALRVLVEGLKRSNNLVIINWKDREGNTILHLAAA 189

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
            K  Q++ELL+  N+    ++ +N  NK G TAL++
Sbjct: 190 RKNHQVIELLLNCNNRSPGVLEVNATNKIGLTALEI 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495749|ref|XP_003635081.1| PREDICTED: uncharacterized protein LOC100852638 [Vitis vinifera]

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 99/179 (55%), Gaps = 9/179 (5%)

Query: 13  NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSI 72
           NQ+G + +HL +  G   +VR+  E + ELC       M PLH A+++G ++ +  L+S 
Sbjct: 70  NQQGYSPIHLAAAHGHVDVVRMLIEISSELCCLKGRDGMTPLHCASVKGRAETMSLLISA 129

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATL 132
            P  + ++T  GETALH+A + ++ DA + LV+  +  +   +   KD +GNTVLHLA  
Sbjct: 130 SPLCVIEVTERGETALHVAARNNQLDALRVLVEWLRRTKALVVINSKDGDGNTVLHLAAA 189

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKQGQTA---LQLCNANS------QDSVFKEIG 182
            K  Q +ELL+  +     ++ +N +NK+G TA   L LC   S       + +F+ IG
Sbjct: 190 RKNHQAIELLLSCSDGAPEVLEVNAINKRGLTAFDLLMLCPCESGIVHAEAERLFRGIG 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739323|emb|CBI28974.3| unnamed protein product [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
           PLH AA+ G ++VIR L+ ICP S+E +T  GETA+HLAVK ++  A +ALV+  K    
Sbjct: 17  PLHLAAITGRTEVIRELLRICPASIEDVTVGGETAVHLAVKNNQLKALKALVESFKHSNI 76

Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
           + L   KD++GNTVLHLAT  K    ++LL+ +       + +N  NK G T L L +  
Sbjct: 77  QDLLNAKDEDGNTVLHLATARKQGLTMKLLLGDGDMAAAAVDVNLTNKSGFTVLDLLDVV 136

Query: 173 SQDSVFKEIGWIIQR 187
            Q  +  E G  I R
Sbjct: 137 QQ--IVNEPGDYILR 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.762	0.427	0.322	9.5e-20
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.782	0.450	0.296	2.3e-15
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.758	0.277	0.276	2e-14
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.713	0.415	0.297	2.6e-13
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.911	0.366	0.254	3.3e-13
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.685	0.265	0.282	7.4e-13
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.649	0.296	0.289	9.1e-13
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.774	0.431	0.259	1.7e-12
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.762	0.353	0.281	2.6e-11
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.645	0.263	0.294	3.2e-11

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 9.5e-20, P = 9.5e-20
 Identities = 62/192 (32%), Positives = 97/192 (50%)

Query:    13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSI 72
             ++ G + +H  +  G    VR      ++LC   D     PLH A + G  DVIR +V+ 
Sbjct:    44 DKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATMRGKIDVIREIVAS 103

Query:    73 CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATL 132
             C + LE  T  G+TALHLAV     +A  A+V+      +  +   KD++GNT LHLAT 
Sbjct:   104 CVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLNKKDEQGNTALHLATW 163

Query:   133 NKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQ 192
              K +Q++E+L++          +N +NK G +A+ L      ++  +EI   +  A AQ+
Sbjct:   164 RKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMFPSEAGDREIYEKLIEAGAQR 223

Query:   193 SPQLPDAGSANV 204
                  D G+ NV
Sbjct:   224 GR---DIGTTNV 232

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 62/209 (29%), Positives = 95/209 (45%)

Query:     4 LWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDS 63
             L P  A   N  G + +HL   +   ++     + N +L L      M PLH    +GD+
Sbjct:    59 LKPTFAKKLNSDGVSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMTPLHLVVKKGDA 118

Query:    64 DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEA-KSHRKE------HLF 116
             +++   +  CPES++    NGETALH+AV   R +  + L     + H+ +      H+ 
Sbjct:   119 NLLTEFLLACPESIKDTNVNGETALHIAVMNDRYEELKVLTGWIHRLHKSDAASTEIHVL 178

Query:   117 TWKDKEGNTVLHLATL-NKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQD 175
               +D++GNT+LHLA   N  K   ELL   + NR I       NK G TAL +   N   
Sbjct:   179 NKRDRDGNTILHLAAYKNNHKAFKELLKCISLNRDIQ------NKGGMTALDILRTNGSH 232

Query:   176 SVFKEIGWIIQRAVAQQSPQLPDAGSANV 204
                K    II+ +  +    L    +A+V
Sbjct:   233 MNIKTEK-IIRHSGGKSGVSLSKVKTASV 260

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 55/199 (27%), Positives = 90/199 (45%)

Query:    47 DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
             D+    P+H A   G   +++A++  CP++LE L    +  LH+A K  + +  + ++  
Sbjct:   347 DDDGSFPIHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRC 406

Query:   107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
              K   KE L   +D  GNT LHLAT N   ++V +L  +N      + + T+N  G TAL
Sbjct:   407 CKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNR-----VDLKTLNHDGVTAL 461

Query:   167 QLCNANSQDSV--FKEIGWI-IQRAVAQQSPQLPDAGSANVSWNQTRWPIETR-NVLLMX 222
              +   N   S   F+ + W+ +  A A + P+L    S  V+ N      + R N LL+ 
Sbjct:   462 DIAEKNMDSSYTFFERLTWMALISAGAPRGPKL--ILSTPVTQNSDGGKYKDRVNTLLLV 519

Query:   223 XXXXXXXXXXXXCNLPDSF 241
                           LP  +
Sbjct:   520 ATLVATMTFTAGFTLPGGY 538

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 56/188 (29%), Positives = 87/188 (46%)

Query:     4 LWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDS 63
             L P  A   N+ G + +HL   +    +     + +  L        M PLH  A +GD 
Sbjct:    59 LKPSFAKKLNEYGLSPLHLAVENDQVELALELVKVDPSLVRIRGRGGMTPLHLVAKKGDV 118

Query:    64 DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHR-KEHLF----TW 118
             D++   +  CPES++ +  NGET LH+ +   + +  + L    +  R  + +F      
Sbjct:   119 DLLTDFLLACPESIKDVNVNGETILHITIMNDKYEQLKVLTGWMQKMRDSDDVFIDVLNR 178

Query:   119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVF 178
             +D+ GNTVLHLA      ++V+ L++  S  R     N  NK G TAL +  A     + 
Sbjct:   179 RDRGGNTVLHLAAYENNDKVVKQLVKCLSLDR-----NIQNKSGMTALDVLRARGSH-MN 232

Query:   179 KEIGWIIQ 186
             KEI  IIQ
Sbjct:   233 KEIEEIIQ 240

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 63/248 (25%), Positives = 109/248 (43%)

Query:     6 PQLASIKNQRGETTMHLLSTDGDARMVR-IFGENNR---ELCLEVDNSLMIPLHRAALEG 61
             P L  ++N+ G T +   ++ G    +R I  E ++    LC   D+    P+H AA EG
Sbjct:   239 PGLIELRNEEGRTCLSYGASMGCYEGIRYILAEFDKAASSLCYVADDDGFTPIHMAAKEG 298

Query:    62 DSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV--DEAKSHRKEHLFTWK 119
                +I+  +  CP+S E L +  +   H+A    +S   + L+  DE K    E     +
Sbjct:   299 HVRIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGKSKVVKYLLKLDEGKRMMNE-----Q 353

Query:   120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNA---NSQDS 176
             D  GNT LHLAT ++   +V +L   +      I +  +N +G TAL +      N+   
Sbjct:   354 DINGNTPLHLATKHRYPIVVNMLTWNDG-----INLRALNNEGFTALDIAETMKDNNAYV 408

Query:   177 VFKEIGWI-IQRAVAQQSPQL-PDAGSANVSWNQTRWPIETRNVLLMXXXXXXXXXXXXX 234
             ++K + W+ +  A A   P L P   S +   +  R+  ++ N L++             
Sbjct:   409 LYKRLIWMALVSAGAPHGPNLIPLTVSQSSKQSPERYK-DSVNTLMVTATLVATVTFAAG 467

Query:   235 CNLPDSFL 242
               LP  ++
Sbjct:   468 LTLPGGYM 475

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 7.4e-13, P = 7.4e-13
 Identities = 50/177 (28%), Positives = 85/177 (48%)

Query:     6 PQLASIKNQRGETTMHLLSTDGDAR-MVRIFGENNRELCLEVDNSLMIPLHRAALEGDSD 64
             P L + +++ G T + + +  G  + +V +   +   +  E D+    P+H A  +G   
Sbjct:   247 PSLVNERDEEGRTCLSVAAYVGYYKGVVNLLHRSTSNV-FECDDDGSYPIHMAVEKGRVK 305

Query:    65 VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGN 124
             +   L+  CP+S   L   G+  LH+A K  ++  +   V +A    K  L   +D +GN
Sbjct:   306 IFLKLLKCCPDSQYLLNKQGQNILHIAAKSGKTGTYLLQVIKAYDLIKNDLIMEQDVDGN 365

Query:   125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDS-VFKE 180
             T LHLATL    + V +L +      + IR    NK G +AL +  +N Q + VF+E
Sbjct:   366 TPLHLATLTWRPRTVNILNKFTLGNHLHIR----NKDGLSALDIAESNLQSNYVFRE 418

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 50/173 (28%), Positives = 84/173 (48%)

Query:     8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIR 67
             L  IK + G    H+ +  GD  ++++  E + EL + VD S    LH AA +G ++V+ 
Sbjct:    93 LVEIKARNGFDAFHIAAKQGDLDVLKVLAEAHSELAMTVDLSNTTALHTAATQGHTEVVN 152

Query:    68 ALVSICPESLEKLT-SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTV 126
              L+ +   SL  +  SNG+TALH A +       +AL+    +     +    DK+G T 
Sbjct:   153 FLLEL-GSSLAGIAKSNGKTALHSASRNGHVKVIKALLASEPA-----IAIRMDKKGQTA 206

Query:   127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFK 179
             LH+A      ++VE LI+ + +      IN  + +G TAL +     +  + K
Sbjct:   207 LHMAVKGTNVEVVEELIKADRSS-----INIADTKGNTALHIAARKGRSQIVK 254

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 53/204 (25%), Positives = 92/204 (45%)

Query:     1 MARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALE 60
             +  L P  A   N  G + +HL   +G  R+V    + + +L        M P H+    
Sbjct:    56 LMNLKPSFARKLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVRLRGREGMTPFHQVVRR 115

Query:    61 GDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK---EHL-- 115
             G++D++   +  CP  ++    NGETALH+AV   R +  + L+   +  R+   E L  
Sbjct:   116 GETDLMTEFLLACPGCIKDANVNGETALHIAVSNDRYEELEVLLGWVQRLRQTDAESLEM 175

Query:   116 --FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANS 173
                  +D++GNT LH+A      + V++L++ ++  R     N  N+ G TAL + +   
Sbjct:   176 QFLNKRDQDGNTALHIAAYQNRFKAVKILVKCSAVNR-----NIHNRTGLTALDILHNQR 230

Query:   174 QDSVFKEIGWIIQRAVAQQSPQLP 197
                    I  II++   +    LP
Sbjct:   231 DHHANSNIENIIRKWGGKSGNSLP 254

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 61/217 (28%), Positives = 97/217 (44%)

Query:     1 MARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELC--LE--VDNSLMI---- 52
             +  + P L S  N + +T +HL +  G   ++ +  E+  E    LE  V N L +    
Sbjct:    46 IVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLESTAESIESLEETVPNDLKLAEMV 105

Query:    53 ------PLHRAALEGDSDVIRALVSICPESLEKLT-SNGETALHLAVKKSRSDAFQALVD 105
                   PLH A + G  + + A ++  P S + +T    ET  HLA +  + +AF   + 
Sbjct:   106 NKDGFTPLHCAVMNGSVETLTAFINKAPLSFDSVTLQTSETVFHLAARHKKMEAF---IF 162

Query:   106 EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTA 165
              AK+     L    D EGNTVLH A       +V  ++ E     I I + T N +G  A
Sbjct:   163 MAKNANLRRLLYELDGEGNTVLHAAASVGFLSLVSYIVHE-----IKIEVTTQNDKGFEA 217

Query:   166 LQLCNANSQDSVFKEIGWII--QRAVAQQSPQLP-DA 199
             + L N + +D  FK +  I+     + Q++   P DA
Sbjct:   218 VDLLNKDDED--FKMMSMILGHDSEIVQRAASSPRDA 252

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 50/170 (29%), Positives = 80/170 (47%)

Query:    12 KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVS 71
             KN  G   +H+  + G   +V++  E+  +L   V  S   PL  AA  G S+V+  L++
Sbjct:   174 KNLSGFDALHIACSQGHRSIVQLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLA 233

Query:    72 ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLAT 131
                  LE   SNG+ ALHLA ++   D  + L+D     +   L    DK+G T LH+A 
Sbjct:   234 KDSSLLEISRSNGKNALHLAARQGHVDIVRTLLD-----KDPQLARRTDKKGQTSLHMAV 288

Query:   132 LNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEI 181
                  Q+V LL+R +    +M+     +K G T L +     +  +  E+
Sbjct:   289 KGVSSQVVRLLLRADP-AIVMLP----DKFGNTVLHIATRKKRAEIVNEL 333

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.02320016 hypothetical protein (448 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 76.7 bits (189), Expect = 7e-18
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
             D     PLH AA  G  +V++ L+    +   K  ++G T LHLA K    +  + L+
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 105 DEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQT 164
           ++            +DK+GNT LHLA  N    +V+LL++  ++      +N  +K G+T
Sbjct: 61  EKGADVNA------RDKDGNTPLHLAARNGNLDVVKLLLKHGAD------VNARDKDGRT 108

Query: 165 ALQLC 169
            L L 
Sbjct: 109 PLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 73.6 bits (181), Expect = 9e-17
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 8/133 (6%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
            +++ G T +HL +++G   +V++  EN  ++    DN    PLH AA  G  ++++ L+
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNA-KDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLA 130
                 +     +G T LHLA +    D  + L+              +DK+G T LHLA
Sbjct: 61  EKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLK------HGADVNARDKDGRTPLHLA 113

Query: 131 TLNKLKQIVELLI 143
             N   ++V+LL+
Sbjct: 114 AKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 57.1 bits (137), Expect = 8e-10
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 47  DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
           D    +PLH AA +GD  +++ L++     +    ++G+T LHLA            V +
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAKDADGDTPLHLAALNGNPPEGNIEVAK 128

Query: 107 A--KSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQT 164
              ++     +   +D++GNT LH A LN    IVELL+   ++       N+ N  G T
Sbjct: 129 LLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD------PNSRNSYGVT 182

Query: 165 ALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTRWPIETRNVL 219
           AL     N +  + K    ++ + +     +    G AN + ++      T  ++
Sbjct: 183 ALDPAAKNGRIELVK---LLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLII 234

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 9/95 (9%)

Query: 54  LHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKE 113
           LH AA  G+ ++++ L+    +       + +TALHLA +    +  + L++        
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD---VNLGDTDTALHLAARNGNLEIVKLLLE------HG 51

Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
                KDK+GNT LHLA  N   +IV+LL+   ++
Sbjct: 52  ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD 105
            LH AA  G+ ++++ L+    +   K   +G TALHLA +    +  + L++
Sbjct: 31  ALHLAARNGNLEIVKLLLEHGADVNAK-DKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 14/94 (14%)

Query: 88  LHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS 147
           LHLA K    +  + L++      K       D   +T LHLA  N   +IV+LL+   +
Sbjct: 1   LHLAAKNGNLELVKLLLE------KGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGA 52

Query: 148 NRRIMIRINTVNKQGQTALQLCNANSQDSVFKEI 181
           +      +N  +K G TAL L   N    + K +
Sbjct: 53  D------VNAKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
           D  GNT LHLA      ++V+ L++   +      +N  +  G TAL L
Sbjct: 13  DGNGNTPLHLAAKYGALELVQWLLKPGVD------LNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 86  TALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
           TALH A    R +  + L++      K       D++GNT LH+A  N   ++++LL+
Sbjct: 3   TALHKAAISGRLELVKYLLE------KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
            LH+AA+ G  ++++ L+      + +   +G TALH+A +    +  + L+
Sbjct: 4   ALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 37 ENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
          E+        D +   PLH AA  G  ++++ L+      L    S+G TAL LA
Sbjct: 3  EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 69  LVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLH 128
           L+   P  L     NG T LHLA K    +  Q L+              +D +G T L 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL------RDSDGLTALD 54

Query: 129 LA 130
           LA
Sbjct: 55  LA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 18/191 (9%)

Query: 10  SIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRAL 69
           +I++  G   +H+        ++++  E      ++ DN+   PLH AA  GD   I+ L
Sbjct: 151 NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGDYACIKLL 209

Query: 70  VSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHL 129
           +      + K   NG T LH A+  +RS A + L++ A           +D +G+T LH 
Sbjct: 210 IDHGNHIMNK-CKNGFTPLHNAIIHNRS-AIELLINNAS-------INDQDIDGSTPLHH 260

Query: 130 ATLNKL-KQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRA 188
           A        I+++L+   ++  I I+ N       TA +  N   +D V K+I  I    
Sbjct: 261 AINPPCDIDIIDILLYHKAD--ISIKDNKGENPIDTAFKYIN---KDPVIKDI--IANAV 313

Query: 189 VAQQSPQLPDA 199
           + +++ +L D+
Sbjct: 314 LIKEADKLKDS 324

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 18/114 (15%)

Query: 80  LTSNGETALHLAVKKSRSDA------FQALVDEAKSHRKEHLFTW------KDKEGNTVL 127
             S+GE  LHL ++ ++ D           VD    +R  +L ++      KD  G T L
Sbjct: 137 KNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPL 196

Query: 128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEI 181
           H A  N   + V+ L+   +N       N VNK G T L +   N+   +FK +
Sbjct: 197 HYAVYNNNPEFVKYLLDLGAN------PNLVNKYGDTPLHIAILNNNKEIFKLL 244

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.98
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.94
PHA02946	446	ankyin-like protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
KOG0514	452	consensus Ankyrin repeat protein [General function	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
PHA02741	169	hypothetical protein; Provisional	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PHA02730	672	ankyrin-like protein; Provisional	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PHA02917	661	ankyrin-like protein; Provisional	99.9
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
PHA02730	672	ankyrin-like protein; Provisional	99.9
PHA02736	154	Viral ankyrin protein; Provisional	99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.88
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.86
PHA02792	631	ankyrin-like protein; Provisional	99.85
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.83
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.81
KOG0514	452	consensus Ankyrin repeat protein [General function	99.81
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
PHA02792	631	ankyrin-like protein; Provisional	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.7
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.68
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.65
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.6
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.53
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.49
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.48
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.47
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.46
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.45
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.38
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.36
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.05
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.0
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.95
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.94
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.93
PF13962	113	PGG: Domain of unknown function	98.91
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.91
PF13606	30	Ank_3: Ankyrin repeat	98.84
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.83
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.81
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.76
PF13606	30	Ank_3: Ankyrin repeat	98.71
KOG0522	560	consensus Ankyrin repeat protein [General function	98.6
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.59
KOG0522	560	consensus Ankyrin repeat protein [General function	98.58
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.54
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.54
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.47
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.4
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.38
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.33
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.3
KOG2384	223	consensus Major histocompatibility complex protein	98.28
KOG0511	516	consensus Ankyrin repeat protein [General function	98.16
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.15
KOG0511	516	consensus Ankyrin repeat protein [General function	98.1
KOG2384	223	consensus Major histocompatibility complex protein	98.01
KOG2505	591	consensus Ankyrin repeat protein [General function	97.63
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.96
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.86
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.65
KOG2505	591	consensus Ankyrin repeat protein [General function	96.18
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.62
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.62
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.42
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.33
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.61

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.7e-39  Score=226.92  Aligned_cols=181  Identities=27%  Similarity=0.347  Sum_probs=161.9

Q ss_pred             ccCc-hhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc
Q 037085            3 RLWP-QLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT   81 (248)
Q Consensus         3 ~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   81 (248)
                      ...| ++....|.+|+|||||||+.|+.+++.+|++.-....+.+|..|+||||+||..|+.++|+.|+.+.+.+++..+
T Consensus        24 ~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~t  103 (226)
T KOG4412|consen   24 QSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATT  103 (226)
T ss_pred             hcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceec
Confidence            3445 444455669999999999999999999999754444477899999999999999999999999998666799999


Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCC
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ  161 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  161 (248)
                      ..|+||||+|+..|..+|+++|+++|+.      ++.+|..|.||||-|+..|+.+++++|+..|+      .+|..|+.
T Consensus       104 n~G~T~LHyAagK~r~eIaqlLle~ga~------i~~kD~~~qtplHRAAavGklkvie~Li~~~a------~~n~qDk~  171 (226)
T KOG4412|consen  104 NGGQTCLHYAAGKGRLEIAQLLLEKGAL------IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGA------PLNTQDKY  171 (226)
T ss_pred             CCCcceehhhhcCChhhHHHHHHhcCCC------CcccccccCchhHHHHhccchhhHHHHHhcCC------CCCccccc
Confidence            9999999999999999999999999988      89999999999999999999999999999998      79999999


Q ss_pred             CCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCC
Q 037085          162 GQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDA  199 (248)
Q Consensus       162 g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~  199 (248)
                      |+||||.|..-    ++.++...|.++||+....+..+
T Consensus       172 G~TpL~~al~e----~~~d~a~lLV~~gAd~~~edke~  205 (226)
T KOG4412|consen  172 GFTPLHHALAE----GHPDVAVLLVRAGADTDREDKEG  205 (226)
T ss_pred             CccHHHHHHhc----cCchHHHHHHHhccceeeccccC
Confidence            99999999543    58889999999999988877643

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.3e-32  Score=214.39  Aligned_cols=176  Identities=15%  Similarity=0.151  Sum_probs=133.2

Q ss_pred             hhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHH
Q 037085           10 SIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALH   89 (248)
Q Consensus        10 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh   89 (248)
                      +.+|.+|.||||+|+..|+.+++++|++.++.. +..  +|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~~eiV~lLL~~G-advn~~d~~G~TpLh   99 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLFSG-MDDSQFDDKGNTALY   99 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHH
Confidence            356888999999999999999999999888766 333  4678899888888888888888874 457778888888888


Q ss_pred             HHHHcCChHHHHHHHHHHhccccccccccccCCC-CcHhHHHHhCCcHHHHHHHHhhcccccccccccccC-CCCCCHHH
Q 037085           90 LAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEG-NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KQGQTALQ  167 (248)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g-~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~-~~g~tpl~  167 (248)
                      +|+..|+.+++++|+++|++      ++.++..| .||||+|+..|+.+++++|++++++      .  .| ..|.||||
T Consensus       100 ~Aa~~g~~eivk~Ll~~gad------in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~------~--~d~~~g~TpLh  165 (284)
T PHA02791        100 YAVDSGNMQTVKLFVKKNWR------LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS------T--FDLAILLSCIH  165 (284)
T ss_pred             HHHHcCCHHHHHHHHHCCCC------cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc------c--cccccCccHHH
Confidence            88888888888888888877      66667666 4788888888888888888776541      1  12 24678888


Q ss_pred             HHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccc
Q 037085          168 LCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       168 ~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                      +|+..    ++.+++++|+++|++++.....+...+++++
T Consensus       166 ~Aa~~----g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~A  201 (284)
T PHA02791        166 ITIKN----GHVDMMILLLDYMTSTNTNNSLLFIPDIKLA  201 (284)
T ss_pred             HHHHc----CCHHHHHHHHHCCCCCCcccCCCCChHHHHH
Confidence            88776    6777888888888777766655544345443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.1e-32  Score=196.10  Aligned_cols=176  Identities=19%  Similarity=0.152  Sum_probs=158.3

Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHhcCcchhhhh-cCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHH
Q 037085           15 RGETTMHLLSTDGDARMVRIFGENNRELCLEV-DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVK   93 (248)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~   93 (248)
                      .+.++.+.+|......-++.+++..+..++.+ |.+|+||||+||..|+.+++.+|+++-...++.+|..|+||||+|+.
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhh
Confidence            35678888898888888999999988444555 44999999999999999999999987566788889999999999999


Q ss_pred             cCChHHHHHHHHH-HhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHc
Q 037085           94 KSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN  172 (248)
Q Consensus        94 ~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~  172 (248)
                      .|+.++++.|+.+ |++      +|..++.|.|+||||+..|..+++.+|++.|+      .++.+|..|+||||.|+.-
T Consensus        82 ~g~~evVk~Ll~r~~ad------vna~tn~G~T~LHyAagK~r~eIaqlLle~ga------~i~~kD~~~qtplHRAAav  149 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSGAD------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGA------LIRIKDKQGQTPLHRAAAV  149 (226)
T ss_pred             cCcHHHHHHHhcCCCCC------cceecCCCcceehhhhcCChhhHHHHHHhcCC------CCcccccccCchhHHHHhc
Confidence            9999999999998 777      99999999999999999999999999999998      7899999999999999876


Q ss_pred             CCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccc
Q 037085          173 SQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       173 ~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                          +..+++++|+..|+..+.++..+.+ |++.+
T Consensus       150 ----Gklkvie~Li~~~a~~n~qDk~G~T-pL~~a  179 (226)
T KOG4412|consen  150 ----GKLKVIEYLISQGAPLNTQDKYGFT-PLHHA  179 (226)
T ss_pred             ----cchhhHHHHHhcCCCCCcccccCcc-HHHHH
Confidence                8999999999999999999988877 66644

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=6.6e-31  Score=209.24  Aligned_cols=163  Identities=18%  Similarity=0.075  Sum_probs=147.3

Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCC-CcHHHHHHH
Q 037085           15 RGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNG-ETALHLAVK   93 (248)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g-~t~lh~a~~   93 (248)
                      +|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.+. .++.++..| .||||+|+.
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~ga-din~~~~~g~~TpL~~Aa~  137 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNW-RLMFYGKTGWKTSFYHAVM  137 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CcCccCCCCCcHHHHHHHH
Confidence            5799999999999999999999999988 7889999999999999999999999999854 467777777 489999999


Q ss_pred             cCChHHHHHHHHHHhcccccccccccc-CCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCH-HHHHHH
Q 037085           94 KSRSDAFQALVDEAKSHRKEHLFTWKD-KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTA-LQLCNA  171 (248)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~a~~  171 (248)
                      .|+.+++++|++++..        ..| ..|.||||+|+..|+.+++++|+++|+      +++.+|..|.|| ||+|+.
T Consensus       138 ~g~~eivk~LL~~~~~--------~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gA------d~n~~d~~g~t~~L~~Aa~  203 (284)
T PHA02791        138 LNDVSIVSYFLSEIPS--------TFDLAILLSCIHITIKNGHVDMMILLLDYMT------STNTNNSLLFIPDIKLAID  203 (284)
T ss_pred             cCCHHHHHHHHhcCCc--------ccccccCccHHHHHHHcCCHHHHHHHHHCCC------CCCcccCCCCChHHHHHHH
Confidence            9999999999987543        123 358999999999999999999999998      889999999987 999998


Q ss_pred             cCCCchHHHHHHHHHHhhhhcCCCCC
Q 037085          172 NSQDSVFKEIGWIIQRAVAQQSPQLP  197 (248)
Q Consensus       172 ~~~~~~~~~i~~~L~~~g~~~~~~~~  197 (248)
                      .    ++.+++++|+++|++++....
T Consensus       204 ~----~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        204 N----KDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             c----CCHHHHHHHHHCCCCCccCcc
Confidence            8    789999999999999988766

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4e-31  Score=223.89  Aligned_cols=180  Identities=18%  Similarity=0.154  Sum_probs=158.4

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      .+..+..|.||||+|+..|+.+++++|++.|..+ +..+..+.||||.|+..|+.+++++|++.+....+..+..|.|||
T Consensus        28 ~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL  106 (413)
T PHA02875         28 PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPL  106 (413)
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHH
Confidence            4556778999999999999999999999999887 666788899999999999999999999987665566677899999


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHH
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL  168 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~  168 (248)
                      |+|+..++.+++++|+++|++      ++.++..|.||||+|+..|+.+++++|+++|+      +++.+|..|.||||+
T Consensus       107 ~~A~~~~~~~iv~~Ll~~gad------~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~------~~~~~d~~g~TpL~~  174 (413)
T PHA02875        107 HLATILKKLDIMKLLIARGAD------PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA------CLDIEDCCGCTPLII  174 (413)
T ss_pred             HHHHHhCCHHHHHHHHhCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC------CCCCCCCCCCCHHHH
Confidence            999999999999999999988      78888999999999999999999999999987      788899999999999


Q ss_pred             HHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccc
Q 037085          169 CNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVS  205 (248)
Q Consensus       169 a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~  205 (248)
                      |+..    ++.+++++|+++|++++.....+..++++
T Consensus       175 A~~~----g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~  207 (413)
T PHA02875        175 AMAK----GDIAICKMLLDSGANIDYFGKNGCVAALC  207 (413)
T ss_pred             HHHc----CCHHHHHHHHhCCCCCCcCCCCCCchHHH
Confidence            9987    67899999999999998877776655555

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.2e-30  Score=220.56  Aligned_cols=188  Identities=16%  Similarity=0.206  Sum_probs=166.2

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCch------
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE------   75 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~------   75 (248)
                      ++..+..++..+.+|.||||.|+..|+.+++++|++.|+++ +..+..|.||||.|+..|+.+++++|++.+.+      
T Consensus        21 l~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~   99 (434)
T PHA02874         21 IKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPI   99 (434)
T ss_pred             HHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchh
Confidence            34556667778889999999999999999999999999988 77888999999999999999999999987532      


Q ss_pred             ----------------hhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHH
Q 037085           76 ----------------SLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIV  139 (248)
Q Consensus        76 ----------------~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v  139 (248)
                                      +++.++..|.||||+|+..|+.+++++|+++|++      ++.+|..|.||||+|+..++.+++
T Consensus       100 ~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad------~n~~d~~g~tpLh~A~~~~~~~iv  173 (434)
T PHA02874        100 PCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD------VNIEDDNGCYPIHIAIKHNFFDII  173 (434)
T ss_pred             ccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC------CCCcCCCCCCHHHHHHHCCcHHHH
Confidence                            2456778899999999999999999999999988      888999999999999999999999


Q ss_pred             HHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccc
Q 037085          140 ELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       140 ~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                      ++|++.|+      +++..+..|.||||+|+..    +..+++++|++.|+++......+.+ |++.+
T Consensus       174 ~~Ll~~g~------~~n~~~~~g~tpL~~A~~~----g~~~iv~~Ll~~g~~i~~~~~~g~T-pL~~A  230 (434)
T PHA02874        174 KLLLEKGA------YANVKDNNGESPLHNAAEY----GDYACIKLLIDHGNHIMNKCKNGFT-PLHNA  230 (434)
T ss_pred             HHHHHCCC------CCCCCCCCCCCHHHHHHHc----CCHHHHHHHHhCCCCCcCCCCCCCC-HHHHH
Confidence            99999998      7888999999999999988    7899999999999998777665444 66544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=3.6e-31  Score=220.67  Aligned_cols=181  Identities=17%  Similarity=0.188  Sum_probs=161.8

Q ss_pred             chhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhc-CCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCC
Q 037085            6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVD-NSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNG   84 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   84 (248)
                      .+.++..|.+|-|+||||+.+++.+++++|+++++++ +... ..+.||||+|+++|+..++++|+++| .++..+|.+|
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~~~vv~lLlqhG-Adpt~~D~~G  145 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGHISVVDLLLQHG-ADPTLKDKQG  145 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCcHHHHHHHHHcC-CCCceecCCC
Confidence            5567788999999999999999999999999999999 5555 78999999999999999999999995 5689999999


Q ss_pred             CcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccC-CCCC
Q 037085           85 ETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KQGQ  163 (248)
Q Consensus        85 ~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~-~~g~  163 (248)
                      .+|+|+|+..++.-++-+|+.++++      ++.+|.+|+||||+|+.+|....++.|++.|+      .++.+| ..|.
T Consensus       146 ~~~lHla~~~~~~~~vayll~~~~d------~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a------~~~~~d~~~g~  213 (600)
T KOG0509|consen  146 LTPLHLAAQFGHTALVAYLLSKGAD------IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA------SLLLTDDNHGN  213 (600)
T ss_pred             CcHHHHHHHhCchHHHHHHHHhccc------CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc------cccccccccCC
Confidence            9999999999999999999999988      99999999999999999999988999999998      688887 8999


Q ss_pred             CHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccc
Q 037085          164 TALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVS  205 (248)
Q Consensus       164 tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~  205 (248)
                      ||||+|+..    ++..+++++++.|++......++.+ |+.
T Consensus       214 TpLHwa~~~----gN~~~v~Ll~~g~~~~d~~~~~g~t-p~~  250 (600)
T KOG0509|consen  214 TPLHWAVVG----GNLTAVKLLLEGGADLDKTNTNGKT-PFD  250 (600)
T ss_pred             chHHHHHhc----CCcceEehhhhcCCcccccccCCCC-HHH
Confidence            999999988    7788888777888887777666444 443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9.1e-30  Score=219.12  Aligned_cols=182  Identities=16%  Similarity=0.169  Sum_probs=129.9

Q ss_pred             hhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhC----------------
Q 037085           10 SIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSIC----------------   73 (248)
Q Consensus        10 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~----------------   73 (248)
                      +..+..+.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+||..|+.++++.|++.+                
T Consensus        31 ~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~  109 (477)
T PHA02878         31 TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV-NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAF  109 (477)
T ss_pred             CcccccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHH
Confidence            334456778888888888888888888888777 677788888888888776655544444321                


Q ss_pred             -----------------------------------------------chhhhhhccC-CCcHHHHHHHcCChHHHHHHHH
Q 037085           74 -----------------------------------------------PESLEKLTSN-GETALHLAVKKSRSDAFQALVD  105 (248)
Q Consensus        74 -----------------------------------------------~~~~~~~~~~-g~t~lh~a~~~~~~~~~~~Ll~  105 (248)
                                                                     +.+++..+.. |.||||+|+..|+.+++++|++
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~  189 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLS  189 (477)
T ss_pred             HcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHH
Confidence                                                           1123344555 7888888888888888888888


Q ss_pred             HHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHH
Q 037085          106 EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWII  185 (248)
Q Consensus       106 ~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L  185 (248)
                      +|++      ++..|..|.||||+|+..++.+++++|++.|+      +++.+|..|+||||+|+...   +..+++++|
T Consensus       190 ~gad------~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga------~in~~d~~g~TpLh~A~~~~---~~~~iv~~L  254 (477)
T PHA02878        190 YGAN------VNIPDKTNNSPLHHAVKHYNKPIVHILLENGA------STDARDKCGNTPLHISVGYC---KDYDILKLL  254 (477)
T ss_pred             CCCC------CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCC------CCCCCCCCCCCHHHHHHHhc---CCHHHHHHH
Confidence            8777      77778888888888888888888888888876      67778888888888877531   356777888


Q ss_pred             HHhhhhcCCCCCCCCCcccccc
Q 037085          186 QRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       186 ~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                      +++|++++.+....+.+|++.+
T Consensus       255 l~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        255 LEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             HHcCCCCCccCCCCCCCHHHHH
Confidence            8888777766554444465544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.9e-29  Score=217.62  Aligned_cols=180  Identities=19%  Similarity=0.157  Sum_probs=155.2

Q ss_pred             hhhccCCCCHHHHHH--hCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhC--CHHHHHHHHHhCchhhhhhccCCC
Q 037085           10 SIKNQRGETTMHLLS--TDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEG--DSDVIRALVSICPESLEKLTSNGE   85 (248)
Q Consensus        10 ~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~~g~   85 (248)
                      +..+..|.||||+|+  ..|+.+++++|++.++++ +..+..|.||||+|+..|  +.+++++|++.+ .+++.++..|.
T Consensus       100 ~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g-~din~~d~~g~  177 (480)
T PHA03100        100 NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKG-VDINAKNRYGY  177 (480)
T ss_pred             CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCC-CCcccccCCCC
Confidence            677888999999999  889999999999998887 778888999999999998  899999999885 45777888899


Q ss_pred             cHHHHHHHcCChHHHHHHHHHHhccccccccccccCCC------CcHhHHHHhCCc--HHHHHHHHhhcccccccccccc
Q 037085           86 TALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEG------NTVLHLATLNKL--KQIVELLIRENSNRRIMIRINT  157 (248)
Q Consensus        86 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g------~t~Lh~A~~~~~--~~~v~~Ll~~g~~~~~~~~~~~  157 (248)
                      ||||+|+..|+.+++++|+++|++      ++..+..|      .||||+|+..++  .+++++|+++|+      +++.
T Consensus       178 tpL~~A~~~~~~~iv~~Ll~~ga~------~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~------din~  245 (480)
T PHA03100        178 TPLHIAVEKGNIDVIKFLLDNGAD------INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV------PINI  245 (480)
T ss_pred             CHHHHHHHhCCHHHHHHHHHcCCC------ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC------CCCC
Confidence            999999999999999999998887      67777777      888999999888  899999999887      8899


Q ss_pred             cCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          158 VNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       158 ~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      +|..|.||||+|+..    ++.+++++|+++|++++.....+.+ |++.+.
T Consensus       246 ~d~~g~TpL~~A~~~----~~~~iv~~Ll~~gad~n~~d~~g~t-pl~~A~  291 (480)
T PHA03100        246 KDVYGFTPLHYAVYN----NNPEFVKYLLDLGANPNLVNKYGDT-PLHIAI  291 (480)
T ss_pred             CCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCCccCCCCCc-HHHHHH
Confidence            999999999999987    6789999999999998887766655 666443

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.1e-29  Score=212.36  Aligned_cols=170  Identities=21%  Similarity=0.201  Sum_probs=155.6

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      .+..+.++.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++.+ .+++..+..|.|||
T Consensus        61 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g-ad~~~~~~~g~tpL  139 (413)
T PHA02875         61 PDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG-ADPDIPNTDKFSPL  139 (413)
T ss_pred             ccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCCHH
Confidence            44556789999999999999999999999998876667788999999999999999999999985 55788899999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCC-CCHHH
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQG-QTALQ  167 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g-~tpl~  167 (248)
                      |+|+..|+.+++++|+++|++      ++.+|..|.||||+|+..|+.+++++|+++|+      +++..+..| .||++
T Consensus       140 h~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga------~~n~~~~~~~~t~l~  207 (413)
T PHA02875        140 HLAVMMGDIKGIELLIDHKAC------LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA------NIDYFGKNGCVAALC  207 (413)
T ss_pred             HHHHHcCCHHHHHHHHhcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC------CCCcCCCCCCchHHH
Confidence            999999999999999999988      88899999999999999999999999999998      788888877 58899


Q ss_pred             HHHHcCCCchHHHHHHHHHHhhhhcCCC
Q 037085          168 LCNANSQDSVFKEIGWIIQRAVAQQSPQ  195 (248)
Q Consensus       168 ~a~~~~~~~~~~~i~~~L~~~g~~~~~~  195 (248)
                      +|+..    +..+++++|+++|++++..
T Consensus       208 ~A~~~----~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        208 YAIEN----NKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             HHHHc----CCHHHHHHHHHCCcCcchH
Confidence            99987    7889999999999998764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=8.9e-29  Score=190.11  Aligned_cols=181  Identities=14%  Similarity=0.114  Sum_probs=152.9

Q ss_pred             hhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhC--CHHHHHHHHHhCchhhhhhc-cC
Q 037085            7 QLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEG--DSDVIRALVSICPESLEKLT-SN   83 (248)
Q Consensus         7 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~~~~~~~~-~~   83 (248)
                      ++.......+.||||.|+..|+.++|+.|++..    +..+..|.||||+|+..+  +.+++++|++.+. +++.++ ..
T Consensus        12 ~~~~~~~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~ga-dvn~~~~~~   86 (209)
T PHA02859         12 DFTDYLFYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGA-DVNFKTRDN   86 (209)
T ss_pred             hhHHHHhhccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCC-CCCccCCCC
Confidence            345556788999999999999999999999752    456889999999999854  8999999999854 577776 58


Q ss_pred             CCcHHHHHHHc---CChHHHHHHHHHHhccccccccccccCCCCcHhHHHHh--CCcHHHHHHHHhhccccccccccccc
Q 037085           84 GETALHLAVKK---SRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATL--NKLKQIVELLIRENSNRRIMIRINTV  158 (248)
Q Consensus        84 g~t~lh~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~~~  158 (248)
                      |.||||+|+..   ++.+++++|+++|++      ++.+|..|.||||+|+.  .++.+++++|++.|+      +++.+
T Consensus        87 g~TpLh~a~~~~~~~~~eiv~~Ll~~gad------in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga------din~~  154 (209)
T PHA02859         87 NLSALHHYLSFNKNVEPEILKILIDSGSS------ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV------SFLNK  154 (209)
T ss_pred             CCCHHHHHHHhCccccHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC------Ccccc
Confidence            99999998764   479999999999998      89999999999999986  468999999999998      89999


Q ss_pred             CCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          159 NKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       159 ~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      |..|.||||.++..   .+..+++++|+++|++++.....+.+ |++++.
T Consensus       155 d~~g~t~Lh~~a~~---~~~~~iv~~Ll~~Gadi~~~d~~g~t-pl~la~  200 (209)
T PHA02859        155 DFDNNNILYSYILF---HSDKKIFDFLTSLGIDINETNKSGYN-CYDLIK  200 (209)
T ss_pred             cCCCCcHHHHHHHh---cCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHh
Confidence            99999999975432   15789999999999999887765444 776554

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=3e-29  Score=212.84  Aligned_cols=184  Identities=14%  Similarity=0.131  Sum_probs=155.1

Q ss_pred             hhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhC--CHHHHHHHHHhCchhhhhhccCC
Q 037085            7 QLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEG--DSDVIRALVSICPESLEKLTSNG   84 (248)
Q Consensus         7 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~~g   84 (248)
                      ..++.+|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..+  ..+++++|++.+.+.....|..|
T Consensus        63 advn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g  141 (446)
T PHA02946         63 YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEG  141 (446)
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCC
Confidence            345778999999999999999999999999999998 789999999999998866  48999999998655333568899


Q ss_pred             CcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCC--cHHHHHHHHhhcccccccccccccCCCC
Q 037085           85 ETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNK--LKQIVELLIRENSNRRIMIRINTVNKQG  162 (248)
Q Consensus        85 ~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~~~~~~g  162 (248)
                      .|||| |+..++.+++++|++.|++      ++.+|..|+||||+|+..+  +.+++++|+++|+      +++.+|..|
T Consensus       142 ~tpL~-aa~~~~~~vv~~Ll~~gad------~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Ga------din~~d~~G  208 (446)
T PHA02946        142 CGPLL-ACTDPSERVFKKIMSIGFE------ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGI------SPSKPDHDG  208 (446)
T ss_pred             CcHHH-HHHCCChHHHHHHHhcccc------ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCC------CCcccCCCC
Confidence            99997 5667899999999999988      8889999999999988755  4689999999998      889999999


Q ss_pred             CCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          163 QTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       163 ~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      +||||+|+..+.  ...+++++|+. |++++.+...+.+ |++.+.
T Consensus       209 ~TpLH~Aa~~~~--~~~~iv~lLl~-gadin~~d~~G~T-pLh~A~  250 (446)
T PHA02946        209 NTPLHIVCSKTV--KNVDIINLLLP-STDVNKQNKFGDS-PLTLLI  250 (446)
T ss_pred             CCHHHHHHHcCC--CcHHHHHHHHc-CCCCCCCCCCCCC-HHHHHH
Confidence            999999987621  35788888885 8888887766655 776544

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.5e-29  Score=214.85  Aligned_cols=157  Identities=20%  Similarity=0.163  Sum_probs=134.4

Q ss_pred             HHHHHHhcCcchhhhhcCC-CCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhc
Q 037085           31 MVRIFGENNRELCLEVDNS-LMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKS  109 (248)
Q Consensus        31 ~v~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~  109 (248)
                      ++++|++.|+++ +..+.. |.||||+|+..|+.+++++|++.+ .+++..|..|.||||+|+..++.+++++|++.|++
T Consensus       149 iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g-ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~  226 (477)
T PHA02878        149 ITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSYG-ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS  226 (477)
T ss_pred             HHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            334444444444 445666 999999999999999999999985 45888999999999999999999999999999988


Q ss_pred             cccccccccccCCCCcHhHHHHhC-CcHHHHHHHHhhcccccccccccccCC-CCCCHHHHHHHcCCCchHHHHHHHHHH
Q 037085          110 HRKEHLFTWKDKEGNTVLHLATLN-KLKQIVELLIRENSNRRIMIRINTVNK-QGQTALQLCNANSQDSVFKEIGWIIQR  187 (248)
Q Consensus       110 ~~~~~~~~~~~~~g~t~Lh~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~~~~~-~g~tpl~~a~~~~~~~~~~~i~~~L~~  187 (248)
                            ++.+|..|.||||+|+.. ++.+++++|+++|+      +++.++. .|.||||+|.      ...+++++|++
T Consensus       227 ------in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga------dvn~~~~~~g~TpLh~A~------~~~~~v~~Ll~  288 (477)
T PHA02878        227 ------TDARDKCGNTPLHISVGYCKDYDILKLLLEHGV------DVNAKSYILGLTALHSSI------KSERKLKLLLE  288 (477)
T ss_pred             ------CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC------CCCccCCCCCCCHHHHHc------cCHHHHHHHHH
Confidence                  889999999999999975 68999999999998      8888886 7999999994      35789999999


Q ss_pred             hhhhcCCCCCCCCCccccccc
Q 037085          188 AVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       188 ~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      +|++++....++.+ |++.+.
T Consensus       289 ~gadin~~d~~g~T-pL~~A~  308 (477)
T PHA02878        289 YGADINSLNSYKLT-PLSSAV  308 (477)
T ss_pred             CCCCCCCcCCCCCC-HHHHHH
Confidence            99999988877665 777654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=9.5e-29  Score=210.49  Aligned_cols=180  Identities=24%  Similarity=0.237  Sum_probs=157.3

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      ++..+..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.+ ..++..+..|.|||
T Consensus       117 ~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-~~~n~~~~~g~tpL  194 (434)
T PHA02874        117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKG-AYANVKDNNGESPL  194 (434)
T ss_pred             CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHH
Confidence            4567889999999999999999999999999998 788999999999999999999999999985 45778899999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHH
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL  168 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~  168 (248)
                      |+|+..|+.+++++|++.|++      ++.++..|.||||+|+..+. +.+++|+ .|+      +++.+|..|+||||+
T Consensus       195 ~~A~~~g~~~iv~~Ll~~g~~------i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~------~in~~d~~G~TpLh~  260 (434)
T PHA02874        195 HNAAEYGDYACIKLLIDHGNH------IMNKCKNGFTPLHNAIIHNR-SAIELLI-NNA------SINDQDIDGSTPLHH  260 (434)
T ss_pred             HHHHHcCCHHHHHHHHhCCCC------CcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCC------CCCCcCCCCCCHHHH
Confidence            999999999999999999988      78888999999999998765 5666666 455      788999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          169 CNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       169 a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      |+..+   ...+++++|+++|++++.....+.+ |++.+.
T Consensus       261 A~~~~---~~~~iv~~Ll~~gad~n~~d~~g~T-pL~~A~  296 (434)
T PHA02874        261 AINPP---CDIDIIDILLYHKADISIKDNKGEN-PIDTAF  296 (434)
T ss_pred             HHhcC---CcHHHHHHHHHCcCCCCCCCCCCCC-HHHHHH
Confidence            98752   3678999999999999888876665 766543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.7e-28  Score=211.73  Aligned_cols=170  Identities=26%  Similarity=0.302  Sum_probs=157.2

Q ss_pred             hhHhhhccCCCCHHHHHHhCC--CHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCC
Q 037085            7 QLASIKNQRGETTMHLLSTDG--DARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNG   84 (248)
Q Consensus         7 ~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   84 (248)
                      ..++..+..|.||||+|+..|  +.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++.+ .+++..+..|
T Consensus       132 ~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~  209 (480)
T PHA03100        132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNG-ADINAGDIET  209 (480)
T ss_pred             CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcC-CCccCCCCCC
Confidence            345677889999999999999  999999999999998 778889999999999999999999999985 4577777788


Q ss_pred             ------CcHHHHHHHcCC--hHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccccccccccc
Q 037085           85 ------ETALHLAVKKSR--SDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRIN  156 (248)
Q Consensus        85 ------~t~lh~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  156 (248)
                            .||||+|+..++  .+++++|++.|++      ++.+|..|.||||+|+..++.+++++|++.|+      |++
T Consensus       210 ~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d------in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga------d~n  277 (480)
T PHA03100        210 LLFTIFETPLHIAACYNEITLEVVNYLLSYGVP------INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA------NPN  277 (480)
T ss_pred             CcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCC
Confidence                  899999999999  9999999999988      88999999999999999999999999999998      899


Q ss_pred             ccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCC
Q 037085          157 TVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSP  194 (248)
Q Consensus       157 ~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~  194 (248)
                      .+|..|.||+++|+..    +..+++++|+++|++++.
T Consensus       278 ~~d~~g~tpl~~A~~~----~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        278 LVNKYGDTPLHIAILN----NNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             ccCCCCCcHHHHHHHh----CCHHHHHHHHhcCCCHHH
Confidence            9999999999999987    788999999999997654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=2.9e-28  Score=214.11  Aligned_cols=182  Identities=16%  Similarity=0.223  Sum_probs=155.0

Q ss_pred             Hhhh-ccCCCCHHHHHHh--CCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCC--HHHHHHHHHhCchhhhhhccC
Q 037085            9 ASIK-NQRGETTMHLLST--DGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGD--SDVIRALVSICPESLEKLTSN   83 (248)
Q Consensus         9 ~~~~-~~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~~~~Ll~~~~~~~~~~~~~   83 (248)
                      ++.. |..|.||||.|+.  +++.+++++|+++|+++ +.+|..|.||||+|+..|+  .+++++|++.+ .+++.++..
T Consensus       169 IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~G-ADVN~kD~~  246 (764)
T PHA02716        169 LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCASVIKKIIELG-GDMDMKCVN  246 (764)
T ss_pred             cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcC-CCCCCCCCC
Confidence            4555 8889999999875  46789999999999998 7899999999999999995  59999999985 568999999


Q ss_pred             CCcHHHHHH-------------------------------------HcCChHHHHHHHHHHhccccccccccccCCCCcH
Q 037085           84 GETALHLAV-------------------------------------KKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTV  126 (248)
Q Consensus        84 g~t~lh~a~-------------------------------------~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~  126 (248)
                      |.||||+|+                                     ..|+.+++++|++.|++      ++.+|..|+||
T Consensus       247 G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd------IN~kD~~G~TP  320 (764)
T PHA02716        247 GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK------LHYKDSAGRTC  320 (764)
T ss_pred             CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc------eeccCCCCCCH
Confidence            999999753                                     34677888888888887      88999999999


Q ss_pred             hHHHHh--CCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcC----------CCchHHHHHHHHHHhhhhcCC
Q 037085          127 LHLATL--NKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANS----------QDSVFKEIGWIIQRAVAQQSP  194 (248)
Q Consensus       127 Lh~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~----------~~~~~~~i~~~L~~~g~~~~~  194 (248)
                      ||+|+.  .++.+++++|+++|+      +++.+|..|+||||+|+...          ...++.+++++|+++|++++.
T Consensus       321 LH~Aaa~~~~~~eIVklLLe~GA------DIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~  394 (764)
T PHA02716        321 LHQYILRHNISTDIIKLLHEYGN------DLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA  394 (764)
T ss_pred             HHHHHHHhCCCchHHHHHHHcCC------CCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC
Confidence            999875  457899999999998      89999999999999986521          113578999999999999998


Q ss_pred             CCCCCCCcccc
Q 037085          195 QLPDAGSANVS  205 (248)
Q Consensus       195 ~~~~~~~~~~~  205 (248)
                      ....+.+ |++
T Consensus       395 kn~~G~T-PLh  404 (764)
T PHA02716        395 VNCLGYT-PLT  404 (764)
T ss_pred             cCCCCCC-hHH
Confidence            8866655 775

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=1.1e-28  Score=205.84  Aligned_cols=174  Identities=22%  Similarity=0.258  Sum_probs=159.7

Q ss_pred             CCHHHHHHhCCCHHHHHHHHhc-CcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc-cCCCcHHHHHHHc
Q 037085           17 ETTMHLLSTDGDARMVRIFGEN-NRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT-SNGETALHLAVKK   94 (248)
Q Consensus        17 ~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~lh~a~~~   94 (248)
                      ...++.|+++|.++.++.+++. +.++ +..|.+|.|+||+|+.+++.+++++|+++++ ++|..+ .-+.||||+|+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v-~~~D~~g~tlLHWAAiNNrl~v~r~li~~ga-dvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESV-NNPDREGVTLLHWAAINNRLDVARYLISHGA-DVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCC-CCCCcCCccceeHHHHcCcHHHHHHHHHcCC-CccccCCCCCCCcchHHHHc
Confidence            4577899999999999999999 6666 7889999999999999999999999999955 477766 6688999999999


Q ss_pred             CChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCC
Q 037085           95 SRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQ  174 (248)
Q Consensus        95 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~  174 (248)
                      |+..++.+|+++|++      ++.+|.+|.||||+|+..++..+|-+|+..++      |++.+|.+|+|||++|+..  
T Consensus       123 G~~~vv~lLlqhGAd------pt~~D~~G~~~lHla~~~~~~~~vayll~~~~------d~d~~D~~grTpLmwAayk--  188 (600)
T KOG0509|consen  123 GHISVVDLLLQHGAD------PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGA------DIDLRDNNGRTPLMWAAYK--  188 (600)
T ss_pred             CcHHHHHHHHHcCCC------CceecCCCCcHHHHHHHhCchHHHHHHHHhcc------cCCCcCCCCCCHHHHHHHh--
Confidence            999999999999999      89999999999999999999999999999997      8999999999999999987  


Q ss_pred             CchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          175 DSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       175 ~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                        ++...++.|++.|+.+...+...+.+|++|+.
T Consensus       189 --g~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~  220 (600)
T KOG0509|consen  189 --GFALFVRRLLKFGASLLLTDDNHGNTPLHWAV  220 (600)
T ss_pred             --cccHHHHHHHHhcccccccccccCCchHHHHH
Confidence              55555999999999999999888888999876

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=4.8e-28  Score=208.94  Aligned_cols=190  Identities=14%  Similarity=0.099  Sum_probs=162.7

Q ss_pred             chhHhhhccCCCCHHHHHHhC-----CCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhC---CHHHHHHHHHhCchhh
Q 037085            6 PQLASIKNQRGETTMHLLSTD-----GDARMVRIFGENNRELCLEVDNSLMIPLHRAALEG---DSDVIRALVSICPESL   77 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~~~~Ll~~~~~~~   77 (248)
                      +..++..+..|.||||.|+.+     +..+++++|++.|+++ +.+|..|.||||+|+..+   +.+++++|++.+ .++
T Consensus        61 Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~G-adv  138 (489)
T PHA02798         61 GANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIENG-ADT  138 (489)
T ss_pred             CCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcC-CCc
Confidence            334667889999999999864     6789999999999998 889999999999999876   789999999985 558


Q ss_pred             hhhccCCCcHHHHHHHcCC---hHHHHHHHHHHhcccccccccccc-CCCCcHhHHHHhC----CcHHHHHHHHhhcccc
Q 037085           78 EKLTSNGETALHLAVKKSR---SDAFQALVDEAKSHRKEHLFTWKD-KEGNTVLHLATLN----KLKQIVELLIRENSNR  149 (248)
Q Consensus        78 ~~~~~~g~t~lh~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~----~~~~~v~~Ll~~g~~~  149 (248)
                      +.+|..|.||||+|+..++   .+++++|+++|++      ++..+ ..|.||||.++..    ++.+++++|+++|++.
T Consensus       139 n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad------in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i  212 (489)
T PHA02798        139 TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD------INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII  212 (489)
T ss_pred             cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC------cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc
Confidence            8999999999999999988   9999999999988      77664 5789999998764    4789999999998743


Q ss_pred             cc---------------------------------cccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCC
Q 037085          150 RI---------------------------------MIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQL  196 (248)
Q Consensus       150 ~~---------------------------------~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~  196 (248)
                      ..                                 ++|+|.+|..|+||||+|+..    ++.+++++|++.|++++...
T Consensus       213 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~----~~~~~v~~LL~~GAdin~~d  288 (489)
T PHA02798        213 NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSH----NNRKIFEYLLQLGGDINIIT  288 (489)
T ss_pred             ccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHc----CcHHHHHHHHHcCCcccccC
Confidence            21                                 246788999999999999987    68899999999999999888


Q ss_pred             CCCCCccccccc
Q 037085          197 PDAGSANVSWNQ  208 (248)
Q Consensus       197 ~~~~~~~~~~~~  208 (248)
                      ..+.+ |++++.
T Consensus       289 ~~G~T-pL~~A~  299 (489)
T PHA02798        289 ELGNT-CLFTAF  299 (489)
T ss_pred             CCCCc-HHHHHH
Confidence            77665 777554

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=196.05  Aligned_cols=171  Identities=12%  Similarity=0.093  Sum_probs=150.7

Q ss_pred             hhccCCCCHHHHHHh--CCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhh-----ccC
Q 037085           11 IKNQRGETTMHLLST--DGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKL-----TSN   83 (248)
Q Consensus        11 ~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~-----~~~   83 (248)
                      .++..++|+||+|+.  .|+.+++++|+++|+++ +.  .++.||||.|+..++.+++++|++++....+..     +..
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~  187 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII  187 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence            467789999999999  89999999999999998 43  355899999999999999999999975443332     234


Q ss_pred             CCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCC
Q 037085           84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQ  163 (248)
Q Consensus        84 g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~  163 (248)
                      +.+++|.|+..++.+++++|+++|++      ++.+|..|.||||+|+..|+.+++++|+++|+      +++.+|..|.
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GAD------IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA------dIN~~d~~G~  255 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIED------INQLDAGGRTLLYRAIYAGYIDLVSWLLENGA------NVNAVMSNGY  255 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCC------cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCC
Confidence            78999999999999999999999998      99999999999999999999999999999998      8999999999


Q ss_pred             CHHHHHHHcCC----CchHHHHHHHHHHhhhhcCCCC
Q 037085          164 TALQLCNANSQ----DSVFKEIGWIIQRAVAQQSPQL  196 (248)
Q Consensus       164 tpl~~a~~~~~----~~~~~~i~~~L~~~g~~~~~~~  196 (248)
                      ||||+|+..+.    ...+.+++++|+++|+++....
T Consensus       256 TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        256 TCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             CHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence            99999998853    2346899999999999877643

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.8e-27  Score=205.42  Aligned_cols=177  Identities=20%  Similarity=0.165  Sum_probs=153.3

Q ss_pred             chhHhhhccCCCCHHHHHHhCC---CHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCC---HHHHHHHHHhCchhhhh
Q 037085            6 PQLASIKNQRGETTMHLLSTDG---DARMVRIFGENNRELCLEVDNSLMIPLHRAALEGD---SDVIRALVSICPESLEK   79 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~~~~Ll~~~~~~~~~   79 (248)
                      +..++.+|..|.||||+|+..+   +.+++++|+++|+++ +.+|..|.||||+|++.++   .+++++|++.+. +++.
T Consensus        99 GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~ga-din~  176 (489)
T PHA02798         99 GADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGV-DINT  176 (489)
T ss_pred             CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCC-Cccc
Confidence            3446788999999999999875   789999999999998 8899999999999999988   999999999854 4555


Q ss_pred             h-ccCCCcHHHHHHHc----CChHHHHHHHHHHhcccc---------------------------------ccccccccC
Q 037085           80 L-TSNGETALHLAVKK----SRSDAFQALVDEAKSHRK---------------------------------EHLFTWKDK  121 (248)
Q Consensus        80 ~-~~~g~t~lh~a~~~----~~~~~~~~Ll~~~~~~~~---------------------------------~~~~~~~~~  121 (248)
                      . +..|.||||.++..    ++.+++++|+++|++...                                 ...++.+|.
T Consensus       177 ~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~  256 (489)
T PHA02798        177 HNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDE  256 (489)
T ss_pred             ccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCc
Confidence            5 46789999998764    478999999998865431                                 123567889


Q ss_pred             CCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCC
Q 037085          122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSP  194 (248)
Q Consensus       122 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~  194 (248)
                      .|+||||+|+..++.+++++|++.|+      |++.+|..|+|||++|+..    +..++++.|++.+++++.
T Consensus       257 ~G~TPL~~A~~~~~~~~v~~LL~~GA------din~~d~~G~TpL~~A~~~----~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        257 LGFNPLYYSVSHNNRKIFEYLLQLGG------DINIITELGNTCLFTAFEN----ESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC------cccccCCCCCcHHHHHHHc----CcHHHHHHHHccCCCHHH
Confidence            99999999999999999999999998      8999999999999999987    788999999999888753

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.1e-27  Score=204.44  Aligned_cols=190  Identities=19%  Similarity=0.163  Sum_probs=140.5

Q ss_pred             chhHhhhccCCCCHHHHHHhCC-CHHHHHHHHhcCcchhhhhcCCCCcHHHHHH--HhCCHHHHHHHHHhCchhhhhhcc
Q 037085            6 PQLASIKNQRGETTMHLLSTDG-DARMVRIFGENNRELCLEVDNSLMIPLHRAA--LEGDSDVIRALVSICPESLEKLTS   82 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~~~~Ll~~~~~~~~~~~~   82 (248)
                      +..++.++..|.||||+|+..| ..+++++|++.|+++ +.++..|.||||+|+  ..++.+++++|++.+ .+++.+|.
T Consensus        73 Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~g-ad~~~~d~  150 (471)
T PHA03095         73 GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG-ADVNALDL  150 (471)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcC-CCCCccCC
Confidence            3446677778888888888888 588888888888887 778888888888888  456788888888874 44677777


Q ss_pred             CCCcHHHHHHHcC--ChHHHHHHHHHHhccc-----------------------------cccccccccCCCCcHhHHHH
Q 037085           83 NGETALHLAVKKS--RSDAFQALVDEAKSHR-----------------------------KEHLFTWKDKEGNTVLHLAT  131 (248)
Q Consensus        83 ~g~t~lh~a~~~~--~~~~~~~Ll~~~~~~~-----------------------------~~~~~~~~~~~g~t~Lh~A~  131 (248)
                      .|.||||+|+..+  +.+++++|+++|++..                             .+..++.+|..|+||||+|+
T Consensus       151 ~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa  230 (471)
T PHA03095        151 YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMA  230 (471)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            7888888777654  4566777777665521                             11114556666666666666


Q ss_pred             hCCcH--HHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          132 LNKLK--QIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       132 ~~~~~--~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      ..++.  .+++.|++.|+      +++.+|..|+||||+|+..    ++.+++++|+++|++++.....+.+ |++.+.
T Consensus       231 ~~~~~~~~~v~~ll~~g~------din~~d~~g~TpLh~A~~~----~~~~~v~~LL~~gad~n~~~~~g~t-pl~~A~  298 (471)
T PHA03095        231 TGSSCKRSLVLPLLIAGI------SINARNRYGQTPLHYAAVF----NNPRACRRLIALGADINAVSSDGNT-PLSLMV  298 (471)
T ss_pred             hcCCchHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCcccCCCCCC-HHHHHH
Confidence            66543  46666677765      7888999999999999877    6789999999999999888776665 666443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=1.5e-27  Score=209.66  Aligned_cols=174  Identities=21%  Similarity=0.176  Sum_probs=147.6

Q ss_pred             CchhHhhhccCCCCHHHHHHhCCC--HHHHHHHHhcCcchhhhhcCCCCcHHHHH-------------------------
Q 037085            5 WPQLASIKNQRGETTMHLLSTDGD--ARMVRIFGENNRELCLEVDNSLMIPLHRA-------------------------   57 (248)
Q Consensus         5 ~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A-------------------------   57 (248)
                      ++..++.+|..|.||||+|+..|+  .+++++|++.|+++ +.++..|.||||+|                         
T Consensus       201 ~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~  279 (764)
T PHA02716        201 NGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVK  279 (764)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccc
Confidence            344567789999999999999995  58999999999998 88999999999975                         


Q ss_pred             ------------HHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHH--cCChHHHHHHHHHHhccccccccccccCCC
Q 037085           58 ------------ALEGDSDVIRALVSICPESLEKLTSNGETALHLAVK--KSRSDAFQALVDEAKSHRKEHLFTWKDKEG  123 (248)
Q Consensus        58 ------------~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g  123 (248)
                                  +..|+.+++++|++.+ ..++.+|..|+||||+|+.  .++.+++++|+++|++      ++.+|..|
T Consensus       280 ~~~~~L~~~i~AA~~g~leiVklLLe~G-AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD------IN~kD~~G  352 (764)
T PHA02716        280 NIPMILHSYITLARNIDISVVYSFLQPG-VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND------LNEPDNIG  352 (764)
T ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHhCC-CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC------CccCCCCC
Confidence                        3457788999999885 4588899999999999764  4678999999999988      89999999


Q ss_pred             CcHhHHHHh--------------CCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhh
Q 037085          124 NTVLHLATL--------------NKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAV  189 (248)
Q Consensus       124 ~t~Lh~A~~--------------~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g  189 (248)
                      +||||+|+.              .++.+++++|+++|+      +++.+|..|.||||.++..+...+..+++++|++.|
T Consensus       353 ~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GA------DIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~  426 (764)
T PHA02716        353 NTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA------DITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDK  426 (764)
T ss_pred             CCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCC------CCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCc
Confidence            999999875              368899999999998      899999999999995433323346789999999987


Q ss_pred             hhc
Q 037085          190 AQQ  192 (248)
Q Consensus       190 ~~~  192 (248)
                      +..
T Consensus       427 ~~~  429 (764)
T PHA02716        427 VLN  429 (764)
T ss_pred             chh
Confidence            643

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=204.78  Aligned_cols=170  Identities=16%  Similarity=0.150  Sum_probs=99.4

Q ss_pred             HhhhccCCCCHHHHHHhC---CCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHh--CCHHHHHHHHHhCchhhhh-hcc
Q 037085            9 ASIKNQRGETTMHLLSTD---GDARMVRIFGENNRELCLEVDNSLMIPLHRAALE--GDSDVIRALVSICPESLEK-LTS   82 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~~~~Ll~~~~~~~~~-~~~   82 (248)
                      ++.+|..|.||||.|+..   ++.+++++|+++|+++.+.+|..|.||||+|+..  ++.+++++|++.+.+ ++. .+.
T Consensus       101 in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad-i~~~~~~  179 (494)
T PHA02989        101 INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN-LFEKTSL  179 (494)
T ss_pred             CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-ccccccc
Confidence            455566666666665543   4566666666666665445566666666666543  456666666666433 333 455


Q ss_pred             CCCcHHHHHHHcC----ChHHHHHHHHHHhccccc--------------------------------cccccccCCCCcH
Q 037085           83 NGETALHLAVKKS----RSDAFQALVDEAKSHRKE--------------------------------HLFTWKDKEGNTV  126 (248)
Q Consensus        83 ~g~t~lh~a~~~~----~~~~~~~Ll~~~~~~~~~--------------------------------~~~~~~~~~g~t~  126 (248)
                      .|.||||+|+..+    +.+++++|+++|++....                                ..++.+|..|+||
T Consensus       180 ~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~Tp  259 (494)
T PHA02989        180 YGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNP  259 (494)
T ss_pred             cCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCH
Confidence            6666666665543    566666666666553211                                1134455556666


Q ss_pred             hHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhh
Q 037085          127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAV  189 (248)
Q Consensus       127 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g  189 (248)
                      ||+|+..++.+++++|+++|+      |++.+|..|.||||+|+..    ++.++++.|++.+
T Consensus       260 L~~Aa~~~~~~~v~~LL~~Ga------din~~d~~G~TpL~~A~~~----~~~~iv~~LL~~~  312 (494)
T PHA02989        260 LLISAKVDNYEAFNYLLKLGD------DIYNVSKDGDTVLTYAIKH----GNIDMLNRILQLK  312 (494)
T ss_pred             HHHHHHhcCHHHHHHHHHcCC------CccccCCCCCCHHHHHHHc----CCHHHHHHHHhcC
Confidence            666666666666666666665      5566666666666666555    4555666665543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.4e-27  Score=180.24  Aligned_cols=150  Identities=20%  Similarity=0.260  Sum_probs=133.1

Q ss_pred             HhhhccCCCCHHHHHHhCC--CHHHHHHHHhcCcchhhhhc-CCCCcHHHHHHHh---CCHHHHHHHHHhCchhhhhhcc
Q 037085            9 ASIKNQRGETTMHLLSTDG--DARMVRIFGENNRELCLEVD-NSLMIPLHRAALE---GDSDVIRALVSICPESLEKLTS   82 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~   82 (248)
                      .+..|..|.||||+|+..+  +.+++++|++.++++ +.++ ..|.||||+|+..   ++.+++++|++. +.+++.+|.
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~-gadin~~d~  121 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYLSFNKNVEPEILKILIDS-GSSITEEDE  121 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHHHhCccccHHHHHHHHHC-CCCCCCcCC
Confidence            5667899999999999854  899999999999999 5665 5899999998753   579999999998 556899999


Q ss_pred             CCCcHHHHHHH--cCChHHHHHHHHHHhccccccccccccCCCCcHhHH-HHhCCcHHHHHHHHhhcccccccccccccC
Q 037085           83 NGETALHLAVK--KSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHL-ATLNKLKQIVELLIRENSNRRIMIRINTVN  159 (248)
Q Consensus        83 ~g~t~lh~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~-A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  159 (248)
                      .|.||||+|+.  .++.+++++|+++|++      ++.+|..|.||||. |+..++.+++++|+++|+      +++.+|
T Consensus       122 ~G~TpLh~a~~~~~~~~~iv~~Li~~gad------in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Ga------di~~~d  189 (209)
T PHA02859        122 DGKNLLHMYMCNFNVRINVIKLLIDSGVS------FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGI------DINETN  189 (209)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHHHcCCC------cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCC------CCCCCC
Confidence            99999999876  4689999999999988      88999999999996 566789999999999998      899999


Q ss_pred             CCCCCHHHHHHHc
Q 037085          160 KQGQTALQLCNAN  172 (248)
Q Consensus       160 ~~g~tpl~~a~~~  172 (248)
                      ..|+||+++|..+
T Consensus       190 ~~g~tpl~la~~~  202 (209)
T PHA02859        190 KSGYNCYDLIKFR  202 (209)
T ss_pred             CCCCCHHHHHhhh
Confidence            9999999999765

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.3e-27  Score=203.30  Aligned_cols=183  Identities=17%  Similarity=0.177  Sum_probs=146.2

Q ss_pred             chhHhhhccCCCCHHHHHHhCC---CHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhC-CHHHHHHHHHhCchhhhhhc
Q 037085            6 PQLASIKNQRGETTMHLLSTDG---DARMVRIFGENNRELCLEVDNSLMIPLHRAALEG-DSDVIRALVSICPESLEKLT   81 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~~~~Ll~~~~~~~~~~~   81 (248)
                      +..++..+..|.||||+|+..+   +.+++++|++.|+++ +.++..|.||||+|+..| +.+++++|++.+ .+++.++
T Consensus        37 ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~g-a~in~~~  114 (471)
T PHA03095         37 GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATTLDVIKLLIKAG-ADVNAKD  114 (471)
T ss_pred             CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCcHHHHHHHHHcC-CCCCCCC
Confidence            3446678899999999999998   999999999999998 788999999999999999 599999999984 5588999


Q ss_pred             cCCCcHHHHHH--HcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCC--cHHHHHHHHhhcccccccccccc
Q 037085           82 SNGETALHLAV--KKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNK--LKQIVELLIRENSNRRIMIRINT  157 (248)
Q Consensus        82 ~~g~t~lh~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~~  157 (248)
                      ..|.||||+|+  ..++.+++++|+++|++      ++.+|..|.||||+|+..+  +.+++++|++.|+      +++.
T Consensus       115 ~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad------~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~------~~~~  182 (471)
T PHA03095        115 KVGRTPLHVYLSGFNINPKVIRLLLRKGAD------VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGA------DVYA  182 (471)
T ss_pred             CCCCCHHHHHhhCCcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC------CCcc
Confidence            99999999999  45678999999999988      7888889999999888765  5788888888887      5555


Q ss_pred             cCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccc
Q 037085          158 VNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVS  205 (248)
Q Consensus       158 ~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~  205 (248)
                      .+..|.||||+++...  ....++++.|+++|++++.+...+.+ |++
T Consensus       183 ~d~~g~t~Lh~~~~~~--~~~~~i~~~Ll~~g~~~~~~d~~g~t-pLh  227 (471)
T PHA03095        183 VDDRFRSLLHHHLQSF--KPRARIVRELIRAGCDPAATDMLGNT-PLH  227 (471)
T ss_pred             cCCCCCCHHHHHHHHC--CCcHHHHHHHHHcCCCCcccCCCCCC-HHH
Confidence            5666777777666542  23455666666666665555444433 444

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.5e-27  Score=209.92  Aligned_cols=186  Identities=17%  Similarity=0.146  Sum_probs=133.4

Q ss_pred             CchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCch---------
Q 037085            5 WPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE---------   75 (248)
Q Consensus         5 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~---------   75 (248)
                      ++..++.+|..|.||||+|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+.++++.|++.+..         
T Consensus       167 ~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~  245 (682)
T PHA02876        167 GGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLL  245 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHH
Confidence            34446678899999999999999999999999999987 67778888888888888888887777654321         


Q ss_pred             -------------------hhhhhccCCCcHHHHHHHcCCh-HHHHHHHHHHhccccccccccccCCCCcHhHHHHhCC-
Q 037085           76 -------------------SLEKLTSNGETALHLAVKKSRS-DAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNK-  134 (248)
Q Consensus        76 -------------------~~~~~~~~g~t~lh~a~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~-  134 (248)
                                         .++..+..|.||||+|+..++. +++++|++.|++      ++.+|..|.||||+|+..| 
T Consensus       246 ~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad------in~~d~~g~TpLh~Aa~~g~  319 (682)
T PHA02876        246 KAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD------VNAKNIKGETPLYLMAKNGY  319 (682)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHhCC
Confidence                               2344566788888888887775 577788877776      6777777778888777777 


Q ss_pred             cHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccc
Q 037085          135 LKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       135 ~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                      ..+++++|+..|+      +++..|..|.||||+|+..+   ...+++++|++.|++++.+...+.+ |++.+
T Consensus       320 ~~~~v~~Ll~~ga------din~~d~~g~TpLh~A~~~~---~~~~iv~lLl~~gadin~~d~~G~T-pLh~A  382 (682)
T PHA02876        320 DTENIRTLIMLGA------DVNAADRLYITPLHQASTLD---RNKDIVITLLELGANVNARDYCDKT-PIHYA  382 (682)
T ss_pred             CHHHHHHHHHcCC------CCCCcccCCCcHHHHHHHhC---CcHHHHHHHHHcCCCCccCCCCCCC-HHHHH
Confidence            4677777777776      56666666666666665432   3445666666666666655544433 55433

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=4.3e-27  Score=200.65  Aligned_cols=178  Identities=24%  Similarity=0.329  Sum_probs=155.3

Q ss_pred             hhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcch--------------hhhhcCCCCcHHHHHHHhCCHHHHHHHHHh
Q 037085            7 QLASIKNQRGETTMHLLSTDGDARMVRIFGENNREL--------------CLEVDNSLMIPLHRAALEGDSDVIRALVSI   72 (248)
Q Consensus         7 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--------------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~   72 (248)
                      .-++.-|+.|.||||.|+..|+.++++.+|+.+...              .+..|.+|.||||+||+.|+.+.++.|+..
T Consensus       216 ~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~  295 (929)
T KOG0510|consen  216 THINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF  295 (929)
T ss_pred             cccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHc
Confidence            345677899999999999999999999999987643              244588999999999999999999999998


Q ss_pred             CchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccccccc
Q 037085           73 CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIM  152 (248)
Q Consensus        73 ~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~  152 (248)
                       +.+.+.++.++.||||.|+.+|+..+++.|++. .+   ..+++..|..|.||||+|+..|+..+++.|++.|+.    
T Consensus       296 -Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~-~~---~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~----  366 (929)
T KOG0510|consen  296 -GASINSKNKDEESPLHFAAIYGRINTVERLLQE-SD---TRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGAL----  366 (929)
T ss_pred             -CCcccccCCCCCCchHHHHHcccHHHHHHHHhC-cC---ccccccccccCCCchhhhhhcCHHHHHHHHHhcChh----
Confidence             556889999999999999999999999999982 22   245889999999999999999999999999999993    


Q ss_pred             cccc--ccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCC
Q 037085          153 IRIN--TVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPD  198 (248)
Q Consensus       153 ~~~~--~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  198 (248)
                       ..+  ..|.+|.||||.|+..    ++..++++|+.+|+++......
T Consensus       367 -~~~~~e~D~dg~TaLH~Aa~~----g~~~av~~Li~~Ga~I~~~n~~  409 (929)
T KOG0510|consen  367 -FLNMSEADSDGNTALHLAAKY----GNTSAVQKLISHGADIGVKNKK  409 (929)
T ss_pred             -hhcccccccCCchhhhHHHHh----ccHHHHHHHHHcCCceeecccc
Confidence             333  4599999999999987    8999999999999999664433

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.9e-27  Score=210.26  Aligned_cols=179  Identities=19%  Similarity=0.223  Sum_probs=115.0

Q ss_pred             hhhccCCCCHHHHHHhCC-CHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHh-CCHHHHHHHHHhCchhhhhhccCCCcH
Q 037085           10 SIKNQRGETTMHLLSTDG-DARMVRIFGENNRELCLEVDNSLMIPLHRAALE-GDSDVIRALVSICPESLEKLTSNGETA   87 (248)
Q Consensus        10 ~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~~~~Ll~~~~~~~~~~~~~g~t~   87 (248)
                      +..|.+|.||||+|+..| +.++++.|+..+.++ +..|..|.||||+|+.. ++.++++.|++. +.+++.+|..|.||
T Consensus       301 n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~-gadin~~d~~G~Tp  378 (682)
T PHA02876        301 NAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLEL-GANVNARDYCDKTP  378 (682)
T ss_pred             CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHc-CCCCccCCCCCCCH
Confidence            344555555555555555 355555555555554 44555555555555543 345555555554 33455566666666


Q ss_pred             HHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCc-HHHHHHHHhhcccccccccccccCCCCCCHH
Q 037085           88 LHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKL-KQIVELLIRENSNRRIMIRINTVNKQGQTAL  166 (248)
Q Consensus        88 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~-~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl  166 (248)
                      ||+|+..++.+++++|+++|++      ++..+..|.||||+|+..++ ..++++|+++|+      +++.+|..|+|||
T Consensus       379 Lh~Aa~~~~~~iv~~Ll~~gad------~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~ga------din~~d~~G~TpL  446 (682)
T PHA02876        379 IHYAAVRNNVVIINTLLDYGAD------IEALSQKIGTALHFALCGTNPYMSVKTLIDRGA------NVNSKNKDLSTPL  446 (682)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC------ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCC------CCCcCCCCCChHH
Confidence            6666666666666666666665      55566666666666665443 345666666665      7899999999999


Q ss_pred             HHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccc
Q 037085          167 QLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSW  206 (248)
Q Consensus       167 ~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~  206 (248)
                      |+|+..+   ...+++++|+++|++++.....+.+ |+..
T Consensus       447 h~Aa~~~---~~~~iv~lLl~~Gad~n~~d~~g~t-pl~~  482 (682)
T PHA02876        447 HYACKKN---CKLDVIEMLLDNGADVNAINIQNQY-PLLI  482 (682)
T ss_pred             HHHHHhC---CcHHHHHHHHHCCCCCCCCCCCCCC-HHHH
Confidence            9998752   3578999999999999988776655 5543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.1e-26  Score=200.71  Aligned_cols=181  Identities=15%  Similarity=0.147  Sum_probs=150.8

Q ss_pred             CCCCHHHHHHhCC------CHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHh---CCHHHHHHHHHhCchhh-hhhccCC
Q 037085           15 RGETTMHLLSTDG------DARMVRIFGENNRELCLEVDNSLMIPLHRAALE---GDSDVIRALVSICPESL-EKLTSNG   84 (248)
Q Consensus        15 ~g~t~L~~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~-~~~~~~g   84 (248)
                      .+.||||.|+.++      ..+++++|++.|+++ +.++..|.||||.|+..   ++.+++++|+++|. ++ +.+|..|
T Consensus        68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Ga-din~~~d~~g  145 (494)
T PHA02989         68 YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGI-NVNDVKNSRG  145 (494)
T ss_pred             CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCC-CcccccCCCC
Confidence            5789999988754      468999999999998 78899999999988765   67899999999854 46 7888999


Q ss_pred             CcHHHHHHHc--CChHHHHHHHHHHhcccccccccc-ccCCCCcHhHHHHhCC----cHHHHHHHHhhccccc-------
Q 037085           85 ETALHLAVKK--SRSDAFQALVDEAKSHRKEHLFTW-KDKEGNTVLHLATLNK----LKQIVELLIRENSNRR-------  150 (248)
Q Consensus        85 ~t~lh~a~~~--~~~~~~~~Ll~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~~----~~~~v~~Ll~~g~~~~-------  150 (248)
                      .||||+|+..  ++.+++++|+++|++      ++. .+..|.||||+|+..+    +.+++++|++.|++..       
T Consensus       146 ~tpLh~a~~~~~~~~~iv~~Ll~~Gad------i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~  219 (494)
T PHA02989        146 YNLLHMYLESFSVKKDVIKILLSFGVN------LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSE  219 (494)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCC------ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccc
Confidence            9999998764  578999999999988      665 6789999999998764    8899999999988531       


Q ss_pred             -------------------------ccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccc
Q 037085          151 -------------------------IMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVS  205 (248)
Q Consensus       151 -------------------------~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~  205 (248)
                                               .+++++.+|..|+||||+|+..    ++.+++++|++.|++++.....+.+ |++
T Consensus       220 t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~----~~~~~v~~LL~~Gadin~~d~~G~T-pL~  294 (494)
T PHA02989        220 SVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKV----DNYEAFNYLLKLGDDIYNVSKDGDT-VLT  294 (494)
T ss_pred             cHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHh----cCHHHHHHHHHcCCCccccCCCCCC-HHH
Confidence                                     1235678889999999999987    7889999999999999998776665 776


Q ss_pred             ccc
Q 037085          206 WNQ  208 (248)
Q Consensus       206 ~~~  208 (248)
                      .+.
T Consensus       295 ~A~  297 (494)
T PHA02989        295 YAI  297 (494)
T ss_pred             HHH
Confidence            544

>PHA02946 ankyin-like protein; Provisional

Probab=99.94  E-value=1e-26  Score=197.42  Aligned_cols=169  Identities=17%  Similarity=0.175  Sum_probs=146.4

Q ss_pred             chhHhhhccCCCCHHHHHHhCC--CHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccC
Q 037085            6 PQLASIKNQRGETTMHLLSTDG--DARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSN   83 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~   83 (248)
                      +..++.+|..|.||||+|+..+  ..+++++|+++++++....+..|.|||| |+..|+.+++++|++. +.+++.+|..
T Consensus        95 GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~-gad~~~~d~~  172 (446)
T PHA02946         95 GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSI-GFEARIVDKF  172 (446)
T ss_pred             cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhc-cccccccCCC
Confidence            3445678999999999999876  4899999999999985567999999997 6777999999999998 5568899999


Q ss_pred             CCcHHHHHHHcCC--hHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCC--cHHHHHHHHhhcccccccccccccC
Q 037085           84 GETALHLAVKKSR--SDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNK--LKQIVELLIRENSNRRIMIRINTVN  159 (248)
Q Consensus        84 g~t~lh~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~~~~  159 (248)
                      |+||||+|+..++  .+++++|++.|++      ++.+|..|+||||+|+..+  +.+++++|+. |+      +++.+|
T Consensus       173 G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad------in~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-ga------din~~d  239 (446)
T PHA02946        173 GKNHIHRHLMSDNPKASTISWMMKLGIS------PSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST------DVNKQN  239 (446)
T ss_pred             CCCHHHHHHHhcCCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CC------CCCCCC
Confidence            9999999987654  6899999999998      8999999999999999986  7899999985 66      899999


Q ss_pred             CCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhc
Q 037085          160 KQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQ  192 (248)
Q Consensus       160 ~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~  192 (248)
                      ..|+||||+|+...   ...+++++|+++|+..
T Consensus       240 ~~G~TpLh~A~~~~---~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        240 KFGDSPLTLLIKTL---SPAHLINKLLSTSNVI  269 (446)
T ss_pred             CCCCCHHHHHHHhC---ChHHHHHHHHhCCCCC
Confidence            99999999999863   2358889999988754

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=5.3e-26  Score=206.53  Aligned_cols=171  Identities=19%  Similarity=0.190  Sum_probs=154.1

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAV   92 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~   92 (248)
                      +.++.++||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++ +.+++.+|.+|.||||+|+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCCCCcCCCCCCHHHHHH
Confidence            445789999999999999999999999998 78999999999999999999999999998 5568899999999999999


Q ss_pred             HcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHc
Q 037085           93 KKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN  172 (248)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~  172 (248)
                      ..|+.+++++|+..++.      .  ....+.++||.|+..|+.++++.|+++|+      |+|.+|..|.||||+|+..
T Consensus       600 ~~g~~~iv~~L~~~~~~------~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Ga------din~~d~~G~TpLh~A~~~  665 (823)
T PLN03192        600 SAKHHKIFRILYHFASI------S--DPHAAGDLLCTAAKRNDLTAMKELLKQGL------NVDSEDHQGATALQVAMAE  665 (823)
T ss_pred             HhCCHHHHHHHHhcCcc------c--CcccCchHHHHHHHhCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHC
Confidence            99999999999987654      2  23567799999999999999999999998      8999999999999999987


Q ss_pred             CCCchHHHHHHHHHHhhhhcCCCCCCCCCcc
Q 037085          173 SQDSVFKEIGWIIQRAVAQQSPQLPDAGSAN  203 (248)
Q Consensus       173 ~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~  203 (248)
                          ++.+++++|+++|++++.....+...+
T Consensus       666 ----g~~~iv~~Ll~~GAdv~~~~~~g~~t~  692 (823)
T PLN03192        666 ----DHVDMVRLLIMNGADVDKANTDDDFSP  692 (823)
T ss_pred             ----CcHHHHHHHHHcCCCCCCCCCCCCCCH
Confidence                789999999999999988876664333

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=9.5e-27  Score=187.93  Aligned_cols=166  Identities=21%  Similarity=0.256  Sum_probs=136.4

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCc-ch-------hhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCC
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNR-EL-------CLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNG   84 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~-------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   84 (248)
                      ..+|.|||-+|+++|+.++|++|+++.. ++       .+-...+|-+||..|+..||.++|+.|+.++ ..+|......
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g-a~VN~tT~TN  117 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG-ASVNDTTRTN  117 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc-CccccccccC
Confidence            4568899999999999999999988532 21       0112346778888888899999999999885 6678877788


Q ss_pred             CcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCC
Q 037085           85 ETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQT  164 (248)
Q Consensus        85 ~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~t  164 (248)
                      .|||-.||.-|+.+++++|+++|++      ++..|..|.|.||+|++.|+.+|+++|++.|+      |+|.++..|+|
T Consensus       118 StPLraACfDG~leivKyLvE~gad------~~IanrhGhTcLmIa~ykGh~~I~qyLle~gA------Dvn~ks~kGNT  185 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGAD------PEIANRHGHTCLMIACYKGHVDIAQYLLEQGA------DVNAKSYKGNT  185 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCC------CcccccCCCeeEEeeeccCchHHHHHHHHhCC------CcchhcccCch
Confidence            8899999999999999999988888      78888889999999999999999999999887      88889999999


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHhhhhcCCC
Q 037085          165 ALQLCNANSQDSVFKEIGWIIQRAVAQQSPQ  195 (248)
Q Consensus       165 pl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~  195 (248)
                      +||.|++.    ++.+|+++|+++|+.+...
T Consensus       186 ALH~caEs----G~vdivq~Ll~~ga~i~~d  212 (615)
T KOG0508|consen  186 ALHDCAES----GSVDIVQLLLKHGAKIDVD  212 (615)
T ss_pred             HHHhhhhc----ccHHHHHHHHhCCceeeec
Confidence            99998877    7888999999888877543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=3.9e-26  Score=184.37  Aligned_cols=156  Identities=22%  Similarity=0.304  Sum_probs=143.4

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAV   92 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~   92 (248)
                      ..+|-+||..|+..|++++|+.|+.+++++ +.......|||..||..|+.+++++|+++ +.+++..++.|.|+||+|+
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~-gad~~IanrhGhTcLmIa~  158 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEH-GADPEIANRHGHTCLMIAC  158 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHc-CCCCcccccCCCeeEEeee
Confidence            456889999999999999999999999888 66677778999999999999999999998 5568899999999999999


Q ss_pred             HcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHc
Q 037085           93 KKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN  172 (248)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~  172 (248)
                      ..|+.+|+++|++.|++      +|.++..|+|+||.|+..|+.+++++|+++|+       .-.+|..|.|||..|...
T Consensus       159 ykGh~~I~qyLle~gAD------vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga-------~i~~d~~GmtPL~~Aa~t  225 (615)
T KOG0508|consen  159 YKGHVDIAQYLLEQGAD------VNAKSYKGNTALHDCAESGSVDIVQLLLKHGA-------KIDVDGHGMTPLLLAAVT  225 (615)
T ss_pred             ccCchHHHHHHHHhCCC------cchhcccCchHHHhhhhcccHHHHHHHHhCCc-------eeeecCCCCchHHHHhhh
Confidence            99999999999999999      99999999999999999999999999999997       344677799999999887


Q ss_pred             CCCchHHHHHHHHHH
Q 037085          173 SQDSVFKEIGWIIQR  187 (248)
Q Consensus       173 ~~~~~~~~i~~~L~~  187 (248)
                          ++.+++++|+.
T Consensus       226 ----G~~~iVe~L~~  236 (615)
T KOG0508|consen  226 ----GHTDIVERLLQ  236 (615)
T ss_pred             ----cchHHHHHHhc
Confidence                78899999985

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=4.2e-26  Score=194.63  Aligned_cols=153  Identities=25%  Similarity=0.326  Sum_probs=139.0

Q ss_pred             chhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHH-hCchhhhhhccCC
Q 037085            6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVS-ICPESLEKLTSNG   84 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~-~~~~~~~~~~~~g   84 (248)
                      .++++..|.+|.||||+|++.|+.+++..|+..|+++ +.++.++.||||.|++.|+..+++.||+ .+-...+..|-.|
T Consensus       263 kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g  341 (929)
T KOG0510|consen  263 KELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHG  341 (929)
T ss_pred             HHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccC
Confidence            4577889999999999999999999999999999999 8899999999999999999999999999 4445678889999


Q ss_pred             CcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCC
Q 037085           85 ETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQT  164 (248)
Q Consensus        85 ~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~t  164 (248)
                      .||||+|+.+||..++++|+++|+....   ....|.+|+||||.|+..|+..+|++|+.+|+      ++..+|..|.+
T Consensus       342 ~tpLHlaa~~gH~~v~qlLl~~GA~~~~---~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga------~I~~~n~~g~S  412 (929)
T KOG0510|consen  342 MTPLHLAAKSGHDRVVQLLLNKGALFLN---MSEADSDGNTALHLAAKYGNTSAVQKLISHGA------DIGVKNKKGKS  412 (929)
T ss_pred             CCchhhhhhcCHHHHHHHHHhcChhhhc---ccccccCCchhhhHHHHhccHHHHHHHHHcCC------ceeeccccccc
Confidence            9999999999999999999999988321   11459999999999999999999999999998      88899999998


Q ss_pred             HHHH
Q 037085          165 ALQL  168 (248)
Q Consensus       165 pl~~  168 (248)
                      ++++
T Consensus       413 A~~~  416 (929)
T KOG0510|consen  413 AFDT  416 (929)
T ss_pred             cccc
Confidence            8883

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=1.3e-25  Score=176.07  Aligned_cols=164  Identities=26%  Similarity=0.337  Sum_probs=146.0

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHh-----CCHHHHHHHHHhCchhhhhhccC
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALE-----GDSDVIRALVSICPESLEKLTSN   83 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~~~~~Ll~~~~~~~~~~~~~   83 (248)
                      ++..|.+|.|+||||+.++|+++|+.||+.+-...+.++.-|+||+++++-.     .+.++|..|+.. ++....-...
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhhh
Confidence            5678999999999999999999999999999877799999999999998753     467899999987 4433333567


Q ss_pred             CCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCC
Q 037085           84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQ  163 (248)
Q Consensus        84 g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~  163 (248)
                      |+|+|++|+..|+.++++.|+.+|++      +|.+|.+|.|+|+.|+.+|+.+++++||....     +|+...|.+|-
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAd------VNiQDdDGSTALMCA~EHGhkEivklLLA~p~-----cd~sLtD~DgS  408 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGAD------VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS-----CDISLTDVDGS  408 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCC------CccccCCccHHHhhhhhhChHHHHHHHhccCc-----ccceeecCCCc
Confidence            99999999999999999999999999      99999999999999999999999999998765     68999999999


Q ss_pred             CHHHHHHHcCCCchHHHHHHHHHHh
Q 037085          164 TALQLCNANSQDSVFKEIGWIIQRA  188 (248)
Q Consensus       164 tpl~~a~~~~~~~~~~~i~~~L~~~  188 (248)
                      |+|.+|...    ++.+|.-+|..+
T Consensus       409 TAl~IAlea----gh~eIa~mlYa~  429 (452)
T KOG0514|consen  409 TALSIALEA----GHREIAVMLYAH  429 (452)
T ss_pred             hhhhhHHhc----CchHHHHHHHHH
Confidence            999999988    677887777654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.4e-25  Score=195.19  Aligned_cols=184  Identities=14%  Similarity=0.124  Sum_probs=148.4

Q ss_pred             hHhhhccCCCCHHHHHHhC---CCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHH----HHHHHHHhCchhhhhh
Q 037085            8 LASIKNQRGETTMHLLSTD---GDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSD----VIRALVSICPESLEKL   80 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~----~~~~Ll~~~~~~~~~~   80 (248)
                      ..+.+|.+|.||||+|+..   |+.+++++|++.|+++ +.++..|.||||+|+..|+.+    +++.|++.++. .+..
T Consensus        24 ~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~  101 (661)
T PHA02917         24 PNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIN  101 (661)
T ss_pred             cccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCC
Confidence            3456799999999997555   8899999999999998 688999999999999999854    55677766432 3332


Q ss_pred             ccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHH--hCCcHHHHHHHHhhccccccccccccc
Q 037085           81 TSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLAT--LNKLKQIVELLIRENSNRRIMIRINTV  158 (248)
Q Consensus        81 ~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~--~~~~~~~v~~Ll~~g~~~~~~~~~~~~  158 (248)
                      +  ..+++|+|+..++.+++++|+++|++      ++.+|..|.||||.++  ..++.+++++|+++|+      +++.+
T Consensus       102 ~--~~~~~~~a~~~~~~e~vk~Ll~~Gad------in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga------~vn~~  167 (661)
T PHA02917        102 D--FNIFSYMKSKNVDVDLIKVLVEHGFD------LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGC------SVLYE  167 (661)
T ss_pred             C--cchHHHHHhhcCCHHHHHHHHHcCCC------CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCC------Ccccc
Confidence            2  23677889999999999999999999      9999999999999654  4689999999999998      66655


Q ss_pred             CC---CC-----------CCHHHHHHHcC-------CCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          159 NK---QG-----------QTALQLCNANS-------QDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       159 ~~---~g-----------~tpl~~a~~~~-------~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      |.   .|           .||||+|+...       ...++.+++++|+++|++++....++.+ |++.+.
T Consensus       168 d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~T-pLh~A~  237 (661)
T PHA02917        168 DEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCT-ALQYYI  237 (661)
T ss_pred             ccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCc-HHHHHH
Confidence            43   34           59999997521       1235789999999999999998877666 777655

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=9.6e-26  Score=202.30  Aligned_cols=187  Identities=20%  Similarity=0.260  Sum_probs=141.4

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhC-CHHHHHHHHHhCchhhhhhccCCCc
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEG-DSDVIRALVSICPESLEKLTSNGET   86 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~~~~Ll~~~~~~~~~~~~~g~t   86 (248)
                      ..+..+..|.||||.|+.+++.++++.+++++++. +..+..|+||+|+|+..| ..+....+++. +.+++.....|.|
T Consensus       399 ~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~-g~~~n~~s~~G~T  476 (1143)
T KOG4177|consen  399 DPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQIARLLLQY-GADPNAVSKQGFT  476 (1143)
T ss_pred             CcccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcccHhhhhhhHhhc-CCCcchhccccCc
Confidence            35556666666666666666666666666666666 566667777777777776 55555555554 4556666677777


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccc---------------------------cccccccccCCCCcHhHHHHhCCcHHHH
Q 037085           87 ALHLAVKKSRSDAFQALVDEAKSHR---------------------------KEHLFTWKDKEGNTVLHLATLNKLKQIV  139 (248)
Q Consensus        87 ~lh~a~~~~~~~~~~~Ll~~~~~~~---------------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~v  139 (248)
                      |||+|+..|+.+++..+++.++...                           .....+.++.+|.||||+|+..|+.++|
T Consensus       477 ~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~V  556 (1143)
T KOG4177|consen  477 PLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLV  556 (1143)
T ss_pred             chhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHH
Confidence            7777777777766666665442211                           2333778999999999999999999999


Q ss_pred             HHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccc
Q 037085          140 ELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       140 ~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                      ++|+++|+      |++++++.|+||||.|+..    ++.+|+++|+++|++++....++.+ |++.+
T Consensus       557 kfLLe~gA------dv~ak~~~G~TPLH~Aa~~----G~~~i~~LLlk~GA~vna~d~~g~T-pL~iA  613 (1143)
T KOG4177|consen  557 KFLLEHGA------DVNAKDKLGYTPLHQAAQQ----GHNDIAELLLKHGASVNAADLDGFT-PLHIA  613 (1143)
T ss_pred             HHhhhCCc------cccccCCCCCChhhHHHHc----ChHHHHHHHHHcCCCCCcccccCcc-hhHHH
Confidence            99999998      8999999999999999988    7999999999999999999988877 65533

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=1.4e-23  Score=156.18  Aligned_cols=133  Identities=21%  Similarity=0.286  Sum_probs=107.7

Q ss_pred             hhcCCCCcHHHHHHHhCCHHHHHHHHHhC-----chhhhhhccCCCcHHHHHHHcCC----hHHHHHHHHHHhccccccc
Q 037085           45 EVDNSLMIPLHRAALEGDSDVIRALVSIC-----PESLEKLTSNGETALHLAVKKSR----SDAFQALVDEAKSHRKEHL  115 (248)
Q Consensus        45 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~-----~~~~~~~~~~g~t~lh~a~~~~~----~~~~~~Ll~~~~~~~~~~~  115 (248)
                      .++..|.||||+|+..|+.++++.|+...     +..++.+|..|.||||+|+..++    .+++++|+..|++      
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad------   89 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD------   89 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC------
Confidence            45677888888888888888888876431     34567788888999999988888    4788888888877      


Q ss_pred             cccccC-CCCcHhHHHHhCCcHHHHHHHHh-hcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcC
Q 037085          116 FTWKDK-EGNTVLHLATLNKLKQIVELLIR-ENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQS  193 (248)
Q Consensus       116 ~~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~  193 (248)
                      ++.++. .|+||||+|+..++.+++++|++ .|+      +++.+|..|.|||++|...    +..+++++|++.++...
T Consensus        90 in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~------~~~~~n~~g~tpL~~A~~~----~~~~iv~~L~~~~~~~~  159 (169)
T PHA02741         90 INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGI------DLHFCNADNKSPFELAIDN----EDVAMMQILREIVATSR  159 (169)
T ss_pred             CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCC------CCCcCCCCCCCHHHHHHHC----CCHHHHHHHHHHHHHhc
Confidence            777774 89999999999999999999887 465      7888888999999999877    67788888888887754

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.2e-23  Score=155.91  Aligned_cols=140  Identities=21%  Similarity=0.243  Sum_probs=103.4

Q ss_pred             hhhcCCCCcHHHHHHHhCCH----HHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHH---HHHHHHHHhcccccccc
Q 037085           44 LEVDNSLMIPLHRAALEGDS----DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDA---FQALVDEAKSHRKEHLF  116 (248)
Q Consensus        44 ~~~~~~g~t~L~~A~~~g~~----~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~---~~~Ll~~~~~~~~~~~~  116 (248)
                      ...+.++.++||.||+.|+.    +++++|++. +..++.+|..|+||||+|+..++.++   +++|++.|++      +
T Consensus        14 ~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad------i   86 (166)
T PHA02743         14 VEIDEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD------I   86 (166)
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC------C
Confidence            34566777788888888877    444455554 44466777788888888888777554   6788888777      7


Q ss_pred             cccc-CCCCcHhHHHHhCCcHHHHHHHHh-hcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCC
Q 037085          117 TWKD-KEGNTVLHLATLNKLKQIVELLIR-ENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSP  194 (248)
Q Consensus       117 ~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~  194 (248)
                      +.++ ..|.||||+|+..++.+++++|+. .|+      +++.+|..|.||||+|+..    +..+++++|+++|+++++
T Consensus        87 n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~ga------d~~~~d~~g~tpL~~A~~~----~~~~iv~~Ll~~ga~~~~  156 (166)
T PHA02743         87 NARELGTGNTLLHIAASTKNYELAEWLCRQLGV------NLGAINYQHETAYHIAYKM----RDRRMMEILRANGAVCDD  156 (166)
T ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC------CccCcCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCCC
Confidence            7777 478888888888888888888884 565      7777888888888888776    567788888888888877


Q ss_pred             CCCCCC
Q 037085          195 QLPDAG  200 (248)
Q Consensus       195 ~~~~~~  200 (248)
                      +...+.
T Consensus       157 ~~~~~~  162 (166)
T PHA02743        157 PLSIGL  162 (166)
T ss_pred             cccCCc
Confidence            665543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=5e-24  Score=156.60  Aligned_cols=166  Identities=20%  Similarity=0.171  Sum_probs=126.8

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAV   92 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~   92 (248)
                      +--+++|+.+++...+.+.+..+.+..   .+..|+.|+|||.+|++.|+..++++||+.+ .++....++..++|.+|+
T Consensus       126 s~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~G-Adp~~lgk~resALsLAt  201 (296)
T KOG0502|consen  126 SLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSG-ADPDALGKYRESALSLAT  201 (296)
T ss_pred             ccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcC-CChhhhhhhhhhhHhHHh
Confidence            334555555555555555544443322   2566888999999999999999999999884 457777788889999999


Q ss_pred             HcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHc
Q 037085           93 KKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN  172 (248)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~  172 (248)
                      +.|..+++++|+.++.+      +|..|.+|-|||-||++.++.++++.|+..|+      |++..+..|+++++.|+..
T Consensus       202 ~ggytdiV~lLL~r~vd------VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA------d~t~e~dsGy~~mdlAVal  269 (296)
T KOG0502|consen  202 RGGYTDIVELLLTREVD------VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGA------DVTQEDDSGYWIMDLAVAL  269 (296)
T ss_pred             cCChHHHHHHHHhcCCC------cceeccCCCceeeeeecCChHHHHHHHHhcCC------CcccccccCCcHHHHHHHh
Confidence            99999999999998888      88899999999999999999999999999988      7888888999999998877


Q ss_pred             CCCchHHHHHHHHHHhhhhcCCCCCCC
Q 037085          173 SQDSVFKEIGWIIQRAVAQQSPQLPDA  199 (248)
Q Consensus       173 ~~~~~~~~i~~~L~~~g~~~~~~~~~~  199 (248)
                          ++. +++..++..+....+....
T Consensus       270 ----Gyr-~Vqqvie~h~lkl~Q~~~~  291 (296)
T KOG0502|consen  270 ----GYR-IVQQVIEKHALKLCQDSEK  291 (296)
T ss_pred             ----hhH-HHHHHHHHHHHHHhhcccC
Confidence                444 6666666666665555433

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=2e-23  Score=154.78  Aligned_cols=141  Identities=16%  Similarity=0.168  Sum_probs=122.1

Q ss_pred             HhhhccCCCCHHHHHHhCCCH----HHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHH---HHHHHHhCchhhhhhc
Q 037085            9 ASIKNQRGETTMHLLSTDGDA----RMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDV---IRALVSICPESLEKLT   81 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~---~~~Ll~~~~~~~~~~~   81 (248)
                      +...+.++.++||.||+.|+.    +++++|++.+..+ +.+|..|.||||+|+..|+.+.   +++|++.+ ..++.++
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-adin~~d   90 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG-ADINARE   90 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC-CCCCCCC
Confidence            445678899999999999998    5666777777776 7789999999999999988654   78999885 5578887


Q ss_pred             -cCCCcHHHHHHHcCChHHHHHHHH-HHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccC
Q 037085           82 -SNGETALHLAVKKSRSDAFQALVD-EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN  159 (248)
Q Consensus        82 -~~g~t~lh~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  159 (248)
                       ..|.||||+|+..++.+++++|+. .|++      ++.++..|.||||+|+..++.+++++|+++|+      +++.++
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad------~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga------~~~~~~  158 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGVN------LGAINYQHETAYHIAYKMRDRRMMEILRANGA------VCDDPL  158 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCCC------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCcc
Confidence             589999999999999999999995 6777      88899999999999999999999999999998      777777


Q ss_pred             CCCC
Q 037085          160 KQGQ  163 (248)
Q Consensus       160 ~~g~  163 (248)
                      ..|.
T Consensus       159 ~~~~  162 (166)
T PHA02743        159 SIGL  162 (166)
T ss_pred             cCCc
Confidence            7664

>PHA02795 ankyrin-like protein; Provisional

Probab=99.90  E-value=2.1e-23  Score=172.82  Aligned_cols=175  Identities=13%  Similarity=0.023  Sum_probs=148.4

Q ss_pred             HHHhCCCHHHHHHHHhcCcchh-----hhhcCCCCcHHHHHHH--hCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHc
Q 037085           22 LLSTDGDARMVRIFGENNRELC-----LEVDNSLMIPLHRAAL--EGDSDVIRALVSICPESLEKLTSNGETALHLAVKK   94 (248)
Q Consensus        22 ~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~t~L~~A~~--~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~   94 (248)
                      +|+..+..+++++|+.++..+.     ..++..++|+||+++.  .|+.+++++|+++|.+ ++.  .++.||+|.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GAD-In~--~~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAV-IYK--IECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCC-CCC--CCCCCHHHHHHHc
Confidence            8999999999999999999862     1578889999999999  8999999999999654 555  3568999999999


Q ss_pred             CChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCC
Q 037085           95 SRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQ  174 (248)
Q Consensus        95 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~  174 (248)
                      ++.+++++|+++|++.......+..+..+.|++|.|+..++.+++++|+++|+      |+|.+|..|+||||+|+..  
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GA------DIN~kD~~G~TpLh~Aa~~--  231 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIE------DINQLDAGGRTLLYRAIYA--  231 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcC------CcCcCCCCCCCHHHHHHHc--
Confidence            99999999999997532111122223568899999999999999999999998      8999999999999999988  


Q ss_pred             CchHHHHHHHHHHhhhhcCCCCCCCCCccccccccC
Q 037085          175 DSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTR  210 (248)
Q Consensus       175 ~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~  210 (248)
                        ++.+++++|+++|++++.+...+.+ |++.+...
T Consensus       232 --g~~eiVelLL~~GAdIN~~d~~G~T-pLh~Aa~~  264 (437)
T PHA02795        232 --GYIDLVSWLLENGANVNAVMSNGYT-CLDVAVDR  264 (437)
T ss_pred             --CCHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHHc
Confidence              7899999999999999998876655 88766543

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=2.7e-23  Score=154.70  Aligned_cols=133  Identities=20%  Similarity=0.271  Sum_probs=117.5

Q ss_pred             hhHhhhccCCCCHHHHHHhCCCHHHHHHHHhc------CcchhhhhcCCCCcHHHHHHHhCC----HHHHHHHHHhCchh
Q 037085            7 QLASIKNQRGETTMHLLSTDGDARMVRIFGEN------NRELCLEVDNSLMIPLHRAALEGD----SDVIRALVSICPES   76 (248)
Q Consensus         7 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------~~~~~~~~~~~g~t~L~~A~~~g~----~~~~~~Ll~~~~~~   76 (248)
                      .+++.+|..|.|+||+|+..|+.++++.|+..      +..+ +.+|..|.||||+|+..|+    .+++++|++.+ .+
T Consensus        12 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g-ad   89 (169)
T PHA02741         12 EMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG-AD   89 (169)
T ss_pred             HHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC-CC
Confidence            45678899999999999999999999998653      3444 7789999999999999998    58899999985 45


Q ss_pred             hhhhcc-CCCcHHHHHHHcCChHHHHHHHH-HHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085           77 LEKLTS-NGETALHLAVKKSRSDAFQALVD-EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus        77 ~~~~~~-~g~t~lh~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                      ++.++. .|.||||+|+..++.+++++|+. .+++      ++..|..|.||||+|+..++.+++++|++.++
T Consensus        90 in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~------~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         90 INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID------LHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC------CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            777774 89999999999999999999997 4776      88899999999999999999999999999876

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=1.9e-23  Score=189.93  Aligned_cols=149  Identities=18%  Similarity=0.243  Sum_probs=135.3

Q ss_pred             hhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCc
Q 037085            7 QLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGET   86 (248)
Q Consensus         7 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t   86 (248)
                      ...+..|..|.||||+|+..|+.+++++|+++++++ +.+|.+|.||||+|+..|+.+++++|+..+.. .+  ...+.+
T Consensus       549 ~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~-~~--~~~~~~  624 (823)
T PLN03192        549 LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKIFRILYHFASI-SD--PHAAGD  624 (823)
T ss_pred             CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcc-cC--cccCch
Confidence            346778999999999999999999999999999998 88999999999999999999999999986432 22  356789


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCC-CCH
Q 037085           87 ALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQG-QTA  165 (248)
Q Consensus        87 ~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g-~tp  165 (248)
                      +||.|+..|+.++++.|+++|++      ++.+|..|+||||+|+..|+.+++++|+++|+      |++..|..| .||
T Consensus       625 ~L~~Aa~~g~~~~v~~Ll~~Gad------in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA------dv~~~~~~g~~t~  692 (823)
T PLN03192        625 LLCTAAKRNDLTAMKELLKQGLN------VDSEDHQGATALQVAMAEDHVDMVRLLIMNGA------DVDKANTDDDFSP  692 (823)
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC------CCCCCCCCCCCCH
Confidence            99999999999999999999998      89999999999999999999999999999998      889999888 899


Q ss_pred             HHHHHH
Q 037085          166 LQLCNA  171 (248)
Q Consensus       166 l~~a~~  171 (248)
                      ++++..
T Consensus       693 ~~l~~~  698 (823)
T PLN03192        693 TELREL  698 (823)
T ss_pred             HHHHHH
Confidence            988744

>PHA02730 ankyrin-like protein; Provisional

Probab=99.90  E-value=5.6e-23  Score=177.91  Aligned_cols=193  Identities=13%  Similarity=0.112  Sum_probs=148.5

Q ss_pred             HhhhccCCCCHHHHHHhCC---CHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhC--CHHHHHHHHHhCch-hhhhhcc
Q 037085            9 ASIKNQRGETTMHLLSTDG---DARMVRIFGENNRELCLEVDNSLMIPLHRAALEG--DSDVIRALVSICPE-SLEKLTS   82 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~~-~~~~~~~   82 (248)
                      ...+|.+|+||||+|+..|   +.+++++|+++|+++ +.+|..|.||||+|+..+  +.+++++|++.+.. ..+..+.
T Consensus        34 n~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~  112 (672)
T PHA02730         34 SKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSN  112 (672)
T ss_pred             hhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccc
Confidence            3477889999999999997   599999999999999 789999999999999976  79999999998532 3455666


Q ss_pred             CCCcHHHHHHH--cCChHHHHHHHH-HHhcccccccccccc-CCCCcHhHHHHhCCcHHHHHHHHhhccccccccc--cc
Q 037085           83 NGETALHLAVK--KSRSDAFQALVD-EAKSHRKEHLFTWKD-KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIR--IN  156 (248)
Q Consensus        83 ~g~t~lh~a~~--~~~~~~~~~Ll~-~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~--~~  156 (248)
                      .+.+|||.++.  .++.+++++|+. .+.++.  ...+..+ ..|-+|+++++..++.++|++|+++|++.. |..  .+
T Consensus       113 ~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~--~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~-g~~~~~~  189 (672)
T PHA02730        113 INDFDLYSYMSSDNIDLRLLKYLIVDKRIRPS--KNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYST-GYVFRSC  189 (672)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHhcCCChh--hhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccc-ccccccc
Confidence            78899999888  888999999997 444421  1111222 278999999999999999999999998421 111  12


Q ss_pred             ccCCCC-CCHHHHHHHc--CCCchHHHHHHHHHHhhhhcCCCCCCCCCccccc
Q 037085          157 TVNKQG-QTALQLCNAN--SQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSW  206 (248)
Q Consensus       157 ~~~~~g-~tpl~~a~~~--~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~  206 (248)
                      ..+..+ .|.|+++...  .......+++++|+++||+++.+..++.+ |++.
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~T-pLh~  241 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSL-PIQY  241 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCC-HHHH
Confidence            234444 4556645433  13456889999999999999999987776 8764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=2.5e-24  Score=158.22  Aligned_cols=179  Identities=20%  Similarity=0.120  Sum_probs=162.7

Q ss_pred             ccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhcc
Q 037085            3 RLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTS   82 (248)
Q Consensus         3 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~   82 (248)
                      ..+|+.+...+++|++.++.|+-.++...++..+.++... +..+..+.+|+.+++...+.+++..+.+.   .+|..|+
T Consensus        83 ~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De  158 (296)
T KOG0502|consen   83 QLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDE  158 (296)
T ss_pred             ccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHHHHHHHHHHHHHHhhc---cccCccc
Confidence            3466777788899999999999999999999999999988 78899999999999998888888877665   3788999


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCC
Q 037085           83 NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQG  162 (248)
Q Consensus        83 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g  162 (248)
                      .|.|||.||+.+|++.++++|++.|++      .....++..|+|.+|++.|..++|++|+.++.      |+|.-|.+|
T Consensus       159 ~GfTpLiWAaa~G~i~vV~fLL~~GAd------p~~lgk~resALsLAt~ggytdiV~lLL~r~v------dVNvyDwNG  226 (296)
T KOG0502|consen  159 FGFTPLIWAAAKGHIPVVQFLLNSGAD------PDALGKYRESALSLATRGGYTDIVELLLTREV------DVNVYDWNG  226 (296)
T ss_pred             cCchHhHHHHhcCchHHHHHHHHcCCC------hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCC------CcceeccCC
Confidence            999999999999999999999999999      77888999999999999999999999999986      999999999


Q ss_pred             CCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCC
Q 037085          163 QTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGS  201 (248)
Q Consensus       163 ~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~  201 (248)
                      -|||-+|+..    ++.++++.|+..|+++.+....+-.
T Consensus       227 gTpLlyAvrg----nhvkcve~Ll~sGAd~t~e~dsGy~  261 (296)
T KOG0502|consen  227 GTPLLYAVRG----NHVKCVESLLNSGADVTQEDDSGYW  261 (296)
T ss_pred             CceeeeeecC----ChHHHHHHHHhcCCCcccccccCCc
Confidence            9999999876    8999999999999999987765543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=4.9e-23  Score=181.60  Aligned_cols=168  Identities=20%  Similarity=0.160  Sum_probs=134.7

Q ss_pred             hhHhhhccCCCCHHHHHHhCCCHH----HHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhcc
Q 037085            7 QLASIKNQRGETTMHLLSTDGDAR----MVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTS   82 (248)
Q Consensus         7 ~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~   82 (248)
                      ...+..+..|.||||+|+..|+.+    +++.|++.+... +..+  ..+++|+|+..|+.+++++|++. +.+++.+|.
T Consensus        59 a~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~-Gadin~~d~  134 (661)
T PHA02917         59 TNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEH-GFDLSVKCE  134 (661)
T ss_pred             CCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHc-CCCCCccCC
Confidence            334577899999999999999854    567787765432 2222  23677889999999999999998 566899999


Q ss_pred             CCCcHHHHHH--HcCChHHHHHHHHHHhccccccccccccC---CC-----------CcHhHHHHh-----------CCc
Q 037085           83 NGETALHLAV--KKSRSDAFQALVDEAKSHRKEHLFTWKDK---EG-----------NTVLHLATL-----------NKL  135 (248)
Q Consensus        83 ~g~t~lh~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~---~g-----------~t~Lh~A~~-----------~~~  135 (248)
                      .|.||||.++  ..++.+++++|+++|++      ++..|.   .|           .||||+|+.           .++
T Consensus       135 ~g~T~L~~~~a~~~~~~eivklLi~~Ga~------vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~  208 (661)
T PHA02917        135 NHRSVIENYVMTDDPVPEIIDLFIENGCS------VLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVR  208 (661)
T ss_pred             CCccHHHHHHHccCCCHHHHHHHHHcCCC------ccccccccccccccccccccccccHHHHHHhhcccccccccccCc
Confidence            9999999643  57899999999999998      554432   33           599999986           458


Q ss_pred             HHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcC
Q 037085          136 KQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQS  193 (248)
Q Consensus       136 ~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~  193 (248)
                      .+++++|+++|+      |++.+|..|.||||+|+..++.  ..+++++|++ |++..
T Consensus       209 ~eiv~~Li~~Ga------dvn~~d~~G~TpLh~A~~~g~~--~~eivk~Li~-g~d~~  257 (661)
T PHA02917        209 PEVVKCLINHGI------KPSSIDKNYCTALQYYIKSSHI--DIDIVKLLMK-GIDNT  257 (661)
T ss_pred             HHHHHHHHHCCC------CcccCCCCCCcHHHHHHHcCCC--cHHHHHHHHh-CCccc
Confidence            899999999998      8999999999999999988432  3589999975 88764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.90  E-value=1.3e-23  Score=188.76  Aligned_cols=169  Identities=24%  Similarity=0.303  Sum_probs=136.5

Q ss_pred             chhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCC
Q 037085            6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGE   85 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   85 (248)
                      +...+..-..|.||||+|+..|+.++++.+++.+... +.....+.+++|.|...+...+.+.++.. +..++.++..|.
T Consensus       464 g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~v~~~~~l~~~-ga~v~~~~~r~~  541 (1143)
T KOG4177|consen  464 GADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDTVKVAKILLEH-GANVDLRTGRGY  541 (1143)
T ss_pred             CCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc-CccchhccchhhhhhhhhhHHHHHHHhhc-CCceehhccccc
Confidence            3344555556666666666666666666666665444 44455566666666666666666666665 344677788899


Q ss_pred             cHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCH
Q 037085           86 TALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTA  165 (248)
Q Consensus        86 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tp  165 (248)
                      ||||+|+.+|+.++|++|+++|++      ++.+++.|+||||.|+..|+.+++++|+++|+      ++|+.+.+|.||
T Consensus       542 TpLh~A~~~g~v~~VkfLLe~gAd------v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA------~vna~d~~g~Tp  609 (1143)
T KOG4177|consen  542 TPLHVAVHYGNVDLVKFLLEHGAD------VNAKDKLGYTPLHQAAQQGHNDIAELLLKHGA------SVNAADLDGFTP  609 (1143)
T ss_pred             chHHHHHhcCCchHHHHhhhCCcc------ccccCCCCCChhhHHHHcChHHHHHHHHHcCC------CCCcccccCcch
Confidence            999999999999999999999999      89999999999999999999999999999998      899999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHhhhhc
Q 037085          166 LQLCNANSQDSVFKEIGWIIQRAVAQQ  192 (248)
Q Consensus       166 l~~a~~~~~~~~~~~i~~~L~~~g~~~  192 (248)
                      |++|+..    ++.++++.|+..+++.
T Consensus       610 L~iA~~l----g~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  610 LHIAVRL----GYLSVVKLLKVVTATP  632 (1143)
T ss_pred             hHHHHHh----cccchhhHHHhccCcc
Confidence            9999988    7899999999999985

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.6e-22  Score=161.32  Aligned_cols=157  Identities=11%  Similarity=0.047  Sum_probs=132.2

Q ss_pred             HhhhccCCCCHH-HHHHhCCCHHHHHHHHhcCcchhhhh----cCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhh-cc
Q 037085            9 ASIKNQRGETTM-HLLSTDGDARMVRIFGENNRELCLEV----DNSLMIPLHRAALEGDSDVIRALVSICPESLEKL-TS   82 (248)
Q Consensus         9 ~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~-~~   82 (248)
                      +..+|..|.|++ |.|+..|+.+++++|++.|+++ +.+    +..|.||||+|+..++.+++++|++++ .+++.+ +.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~G-ADVN~~~~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYG-ADVNRYAEE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcCcccCC
Confidence            456788887755 5666779999999999999998 554    468999999999999999999999985 457765 46


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCC
Q 037085           83 NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQG  162 (248)
Q Consensus        83 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g  162 (248)
                      .|.||||+|+..++.+++++|+..|++      ++.+|..|.||||+|+..++..++..+.  |.        + .+..+
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAd------in~kd~~G~TpL~~A~~~~~~~~~~~~~--~~--------~-~~~~~  165 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGAD------INIQTNDMVTPIELALMICNNFLAFMIC--DN--------E-ISNFY  165 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHhCChhHHHHhc--CC--------c-ccccc
Confidence            799999999999999999999999998      8899999999999999999888876654  22        1 46677


Q ss_pred             CCHHHHHHHcCCCchHHHHHHHHHHhhhh
Q 037085          163 QTALQLCNANSQDSVFKEIGWIIQRAVAQ  191 (248)
Q Consensus       163 ~tpl~~a~~~~~~~~~~~i~~~L~~~g~~  191 (248)
                      .+|++++       ...+++++|++++..
T Consensus       166 ~~~~~~~-------~n~ei~~~Lish~vl  187 (300)
T PHA02884        166 KHPKKIL-------INFDILKILVSHFIL  187 (300)
T ss_pred             cChhhhh-------ccHHHHHHHHHHHHH
Confidence            8888875       357999999999994

>PHA02730 ankyrin-like protein; Provisional

Probab=99.90  E-value=7.6e-23  Score=177.10  Aligned_cols=186  Identities=11%  Similarity=0.113  Sum_probs=147.4

Q ss_pred             CchhHhhhccCCCCHHHH--HHhCCCHHHHHHHHh--------------------------------cCcchhhh-----
Q 037085            5 WPQLASIKNQRGETTMHL--LSTDGDARMVRIFGE--------------------------------NNRELCLE-----   45 (248)
Q Consensus         5 ~~~~~~~~~~~g~t~L~~--A~~~g~~~~v~~Ll~--------------------------------~~~~~~~~-----   45 (248)
                      .+..++.+|..|+||||+  |+..|+.+++++|++                                .+.+. ..     
T Consensus       224 ~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~  302 (672)
T PHA02730        224 NNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLLI  302 (672)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-HHHHHHh
Confidence            344567889999999995  666688999999999                                45544 22     


Q ss_pred             ---------------hcCCCCc---------------------HHHHHHHhC---CHHHHHHHHHhCchhhhhhccCCCc
Q 037085           46 ---------------VDNSLMI---------------------PLHRAALEG---DSDVIRALVSICPESLEKLTSNGET   86 (248)
Q Consensus        46 ---------------~~~~g~t---------------------~L~~A~~~g---~~~~~~~Ll~~~~~~~~~~~~~g~t   86 (248)
                                     .+..|.+                     .||.-...+   +.+++++|+++|. +++.. ..|.|
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GA-dIN~k-~~G~T  380 (672)
T PHA02730        303 EGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGA-TMDKT-TDNNY  380 (672)
T ss_pred             hccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCC-CCCcC-CCCCc
Confidence                           4556655                     566666655   6899999999954 56664 78999


Q ss_pred             HHHHHHHcCC----hHHHHHHHHHHhccccccccccccCCCCcHhHH---HHhCC---------cHHHHHHHHhhccccc
Q 037085           87 ALHLAVKKSR----SDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHL---ATLNK---------LKQIVELLIRENSNRR  150 (248)
Q Consensus        87 ~lh~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~---A~~~~---------~~~~v~~Ll~~g~~~~  150 (248)
                      |||+|+..++    .+++++|+++|++..    ++.+|..|.||||.   |...+         ..+++++|+.+|+   
T Consensus       381 pLH~Aa~~nnn~i~~eIvelLIs~Ga~~d----IN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GA---  453 (672)
T PHA02730        381 PLHDYFVNNNNIVDVNVVRFIVENNGHMA----INHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMD---  453 (672)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHcCCCcc----ccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhccc---
Confidence            9999988875    899999999987321    78899999999994   33232         2357999999998   


Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccc
Q 037085          151 IMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       151 ~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                         |++.+|..|+||||+|+..    ++.+++++|+++|++++........++++.+
T Consensus       454 ---DINakD~~G~TPLh~Aa~~----~~~eive~LI~~GAdIN~~d~~~g~TaL~~A  503 (672)
T PHA02730        454 ---DIDMIDNENKTLLYYAVDV----NNIQFARRLLEYGASVNTTSRSIINTAIQKS  503 (672)
T ss_pred             ---chhccCCCCCCHHHHHHHh----CCHHHHHHHHHCCCCCCCCCCcCCcCHHHHH
Confidence               8999999999999999987    6789999999999999998875555577654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=9.5e-23  Score=149.66  Aligned_cols=135  Identities=19%  Similarity=0.210  Sum_probs=110.9

Q ss_pred             hhHhhhccCCCCHHHHHHhCCCHHHHHHHHhc----CcchhhhhcCCCCcHHHHHHHhCCH---HHHHHHHHhCchhhhh
Q 037085            7 QLASIKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDS---DVIRALVSICPESLEK   79 (248)
Q Consensus         7 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~~g~t~L~~A~~~g~~---~~~~~Ll~~~~~~~~~   79 (248)
                      .+.+..|.+|.||||+|+..|+...+......    .......+|..|.||||+|+..|+.   +++++|++.+ .+++.
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g-adin~   86 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG-ADING   86 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC-CCccc
Confidence            46778899999999999999984322211111    1223356789999999999999987   4688899885 45777


Q ss_pred             hc-cCCCcHHHHHHHcCChHHHHHHHHH-HhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccc
Q 037085           80 LT-SNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN  148 (248)
Q Consensus        80 ~~-~~g~t~lh~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  148 (248)
                      ++ ..|.||||+|+..++.+++++|+.+ +++      ++.+|..|.||||+|+..++.+++++|+++|++
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d------~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVN------MEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC------CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            77 5899999999999999999999974 776      888999999999999999999999999999973

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=1.3e-22  Score=148.89  Aligned_cols=132  Identities=17%  Similarity=0.146  Sum_probs=110.2

Q ss_pred             hhhcCCCCcHHHHHHHhCCHHHHHHHHHhC------chhhhhhccCCCcHHHHHHHcCChH---HHHHHHHHHhcccccc
Q 037085           44 LEVDNSLMIPLHRAALEGDSDVIRALVSIC------PESLEKLTSNGETALHLAVKKSRSD---AFQALVDEAKSHRKEH  114 (248)
Q Consensus        44 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~------~~~~~~~~~~g~t~lh~a~~~~~~~---~~~~Ll~~~~~~~~~~  114 (248)
                      ...|..|.||||+|++.|+.  +.++....      +.....+|..|.||||+|+..++.+   ++++|++.|++     
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-----   83 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-----   83 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-----
Confidence            55688899999999999984  23322211      1224567889999999999999864   68899999988     


Q ss_pred             cccccc-CCCCcHhHHHHhCCcHHHHHHHHhh-cccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhc
Q 037085          115 LFTWKD-KEGNTVLHLATLNKLKQIVELLIRE-NSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQ  192 (248)
Q Consensus       115 ~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~  192 (248)
                       ++.++ ..|+||||+|+..++.+++++|+.. |+      +++.+|..|+||||+|+..    +..+++++|+++|++.
T Consensus        84 -in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~------d~n~~~~~g~tpL~~A~~~----~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         84 -INGKERVFGNTPLHIAVYTQNYELATWLCNQPGV------NMEILNYAFKTPYYVACER----HDAKMMNILRAKGAQC  152 (154)
T ss_pred             -ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC------CCccccCCCCCHHHHHHHc----CCHHHHHHHHHcCCCC
Confidence             88888 5999999999999999999999974 66      8999999999999999987    7889999999999876


Q ss_pred             C
Q 037085          193 S  193 (248)
Q Consensus       193 ~  193 (248)
                      .
T Consensus       153 ~  153 (154)
T PHA02736        153 K  153 (154)
T ss_pred             C
Confidence            4

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.88  E-value=7.1e-22  Score=140.18  Aligned_cols=142  Identities=24%  Similarity=0.252  Sum_probs=126.3

Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChH
Q 037085           19 TMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSD   98 (248)
Q Consensus        19 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~   98 (248)
                      .+.+|+..+....|+.||+..++..+.+|.+|+||||.|+.+|+.++++.|+.. +...+.+...|+||||.|+.-++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCccchhhhhcccchh
Confidence            457899999999999999999999999999999999999999999999999998 4558888999999999999999999


Q ss_pred             HHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHH-HHHHHHhhcccccccccccccCCCCCCHHHHHHHc
Q 037085           99 AFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQ-IVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN  172 (248)
Q Consensus        99 ~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~-~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~  172 (248)
                      ++..|+++|++      ++...+...||||+|+-.++.. .+++|+....     ++.-.++..+.||+++|-.-
T Consensus       145 va~~LLqhgaD------VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dry-----i~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  145 VAGRLLQHGAD------VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRY-----IHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             HHHHHHhccCc------ccccccccchhhHHhhcccchHHHHHHHhhccc-----cChhhhcCccchHHHHHHHh
Confidence            99999999999      9999999999999999877654 5666665443     57888899999999999543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.86  E-value=1.7e-21  Score=176.08  Aligned_cols=171  Identities=16%  Similarity=0.164  Sum_probs=131.7

Q ss_pred             hhHhhhccCCCCHHH-HHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHh---CCHHHHHHHHHhCch-----hh
Q 037085            7 QLASIKNQRGETTMH-LLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALE---GDSDVIRALVSICPE-----SL   77 (248)
Q Consensus         7 ~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~-----~~   77 (248)
                      ..++..|..|+|||| .|+..++.++++.|++.+.     .+..|.||||.|+..   +...++..+....+.     ..
T Consensus        43 ~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~  117 (743)
T TIGR00870        43 LNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELA  117 (743)
T ss_pred             cCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhh
Confidence            345667889999999 8888999999999999876     577899999999872   222333444433211     01


Q ss_pred             ----hhhccCCCcHHHHHHHcCChHHHHHHHHHHhcccccccccccc--------------CCCCcHhHHHHhCCcHHHH
Q 037085           78 ----EKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD--------------KEGNTVLHLATLNKLKQIV  139 (248)
Q Consensus        78 ----~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~--------------~~g~t~Lh~A~~~~~~~~v  139 (248)
                          ......|.||||+|+..|+.+++++|+++|++      ++.++              ..|.||||.|+..++.+++
T Consensus       118 ~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd------v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv  191 (743)
T TIGR00870       118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS------VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIV  191 (743)
T ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC------CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHH
Confidence                11234699999999999999999999999988      44322              3689999999999999999


Q ss_pred             HHHHhhcccccccccccccCCCCCCHHHHHHHcCC-----CchHHHHHHHHHHhhhhcCC
Q 037085          140 ELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQ-----DSVFKEIGWIIQRAVAQQSP  194 (248)
Q Consensus       140 ~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~-----~~~~~~i~~~L~~~g~~~~~  194 (248)
                      ++|++.|+      |++..|..|+||||+|+..+.     ......+.++++..++....
T Consensus       192 ~lLl~~ga------din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~  245 (743)
T TIGR00870       192 ALLSEDPA------DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRD  245 (743)
T ss_pred             HHHhcCCc------chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Confidence            99999998      899999999999999987641     11234577788888777643

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.85  E-value=2.9e-20  Score=159.71  Aligned_cols=182  Identities=10%  Similarity=0.046  Sum_probs=148.2

Q ss_pred             hHhhhccCCCCHHHHHHhCC-------CHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhC--CHHHHHHHHHhCc---h
Q 037085            8 LASIKNQRGETTMHLLSTDG-------DARMVRIFGENNRELCLEVDNSLMIPLHRAALEG--DSDVIRALVSICP---E   75 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~---~   75 (248)
                      .++..+..|.||||+|+.++       +.++++.|+++|+++ ..+|..|.||||+|+.+.  ..|+++.|++..-   .
T Consensus       167 ~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        167 TTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             ccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccc
Confidence            34577888999999999999       899999999999998 778999999999999988  7888888876410   0


Q ss_pred             ------------------hhh--hh-------------------------------------------------------
Q 037085           76 ------------------SLE--KL-------------------------------------------------------   80 (248)
Q Consensus        76 ------------------~~~--~~-------------------------------------------------------   80 (248)
                                        .++  ..                                                       
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                              000  00                                                       


Q ss_pred             ----------ccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCC--CcHhHHHHhCCcH---HHHHHHHhh
Q 037085           81 ----------TSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEG--NTVLHLATLNKLK---QIVELLIRE  145 (248)
Q Consensus        81 ----------~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g--~t~Lh~A~~~~~~---~~v~~Ll~~  145 (248)
                                .....++++.|+..++.+++++|+++|++      ++.+|..|  .||||+|+.....   +++++|+++
T Consensus       326 ~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GAD------IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~  399 (631)
T PHA02792        326 CMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNV------VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY  399 (631)
T ss_pred             HHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCc------hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc
Confidence                      01134567888899999999999999998      88888775  6999998876654   468899999


Q ss_pred             cccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccc
Q 037085          146 NSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       146 g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                      |+      |+|.+|..|.||||+|+..    +..+++++|+++|++++.....+.+ +++.+
T Consensus       400 GA------DIN~kD~~G~TPLh~Aa~~----~n~eivelLLs~GADIN~kD~~G~T-pL~~A  450 (631)
T PHA02792        400 ID------DINKIDKHGRSILYYCIES----HSVSLVEWLIDNGADINITTKYGST-CIGIC  450 (631)
T ss_pred             CC------ccccccccCcchHHHHHHc----CCHHHHHHHHHCCCCCCCcCCCCCC-HHHHH
Confidence            98      8999999999999999987    7889999999999999988776655 66543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.85  E-value=2.1e-21  Score=148.53  Aligned_cols=153  Identities=26%  Similarity=0.315  Sum_probs=130.4

Q ss_pred             HhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHH
Q 037085           24 STDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQAL  103 (248)
Q Consensus        24 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~L  103 (248)
                      |+.|+.-.|++-++.-...++.-|..|++|||+||+.|+..+++.|++. +..++..+....||||+|+..||.++++.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~r-garvn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhc-ccccccccCCCCcchhhhhhcccHHHHHHH
Confidence            4555555556556655555578899999999999999999999999998 456888888889999999999999999999


Q ss_pred             HHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHH
Q 037085          104 VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGW  183 (248)
Q Consensus       104 l~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~  183 (248)
                      +++.++      +|..+..|+|||||||.-|.-.+++-|+..|+      .++..|+.|.||++.|...    ....+.+
T Consensus        87 l~~kad------vnavnehgntplhyacfwgydqiaedli~~ga------~v~icnk~g~tpldkakp~----l~~~l~e  150 (448)
T KOG0195|consen   87 LSRKAD------VNAVNEHGNTPLHYACFWGYDQIAEDLISCGA------AVNICNKKGMTPLDKAKPM----LKNTLLE  150 (448)
T ss_pred             HHHhcc------cchhhccCCCchhhhhhhcHHHHHHHHHhccc------eeeecccCCCCchhhhchH----HHHHHHH
Confidence            999888      99999999999999999999999999999998      8999999999999998543    3445556


Q ss_pred             HHHHhhhhcC
Q 037085          184 IIQRAVAQQS  193 (248)
Q Consensus       184 ~L~~~g~~~~  193 (248)
                      +-.++|-.++
T Consensus       151 ~aek~gq~~n  160 (448)
T KOG0195|consen  151 IAEKHGQSPN  160 (448)
T ss_pred             HHHHhCCCCC
Confidence            6667777766

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=1.9e-20  Score=153.95  Aligned_cols=174  Identities=21%  Similarity=0.269  Sum_probs=117.2

Q ss_pred             hhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHH
Q 037085           10 SIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALH   89 (248)
Q Consensus        10 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh   89 (248)
                      +..|.+|.|+||-+|...+.+||++|++.++.+ +..|..|+||||.|+.+|+..++++|++.+ ..+..++..|..|+.
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~~li~~g-A~~~avNsdg~~P~d  144 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVEYLIQHG-ANLLAVNSDGNMPYD  144 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHHHHHHHHHhh-hhhhhccCCCCCccc
Confidence            445666666666666666666666666666666 566666666666666666666666666663 334444444444433


Q ss_pred             HHHHcCChHH--------------------------HHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHH
Q 037085           90 LAVKKSRSDA--------------------------FQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI  143 (248)
Q Consensus        90 ~a~~~~~~~~--------------------------~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  143 (248)
                      .+......++                          +...+..|      ...+..+..|.|.||.|+..|..++.++|+
T Consensus       145 l~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G------~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl  218 (527)
T KOG0505|consen  145 LAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAG------AELDARHARGATALHVAAANGYTEVAALLL  218 (527)
T ss_pred             cccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcc------ccccccccccchHHHHHHhhhHHHHHHHHH
Confidence            3221111110                          11111122      225566666999999999999999999999


Q ss_pred             hhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCC
Q 037085          144 RENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGS  201 (248)
Q Consensus       144 ~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~  201 (248)
                      +.|.      +++.+|.+|+||||.|+..    +..+++++|..+|++.......+..
T Consensus       219 ~ag~------~~~~~D~dgWtPlHAAA~W----g~~~~~elL~~~ga~~d~~t~~g~~  266 (527)
T KOG0505|consen  219 QAGY------SVNIKDYDGWTPLHAAAHW----GQEDACELLVEHGADMDAKTKMGET  266 (527)
T ss_pred             Hhcc------CcccccccCCCcccHHHHh----hhHhHHHHHHHhhcccchhhhcCCC
Confidence            9986      8899999999999999877    7888999999999998776665554

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-20  Score=155.12  Aligned_cols=153  Identities=24%  Similarity=0.313  Sum_probs=124.7

Q ss_pred             CchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHH-------------------
Q 037085            5 WPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDV-------------------   65 (248)
Q Consensus         5 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~-------------------   65 (248)
                      +...++..|.+|+||||-|+..|+..++++|+..++++ ...+.+|..|+..+......++                   
T Consensus        95 ~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~  173 (527)
T KOG0505|consen   95 NGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAE  173 (527)
T ss_pred             hcCCccccccccCCcchhhcccccHHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhh
Confidence            44567888999999999999999999999999999988 6677777766543222111111                   


Q ss_pred             -------HHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHH
Q 037085           66 -------IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQI  138 (248)
Q Consensus        66 -------~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~  138 (248)
                             ++..+.. +...+..+..|-|.||+|+..|..++.++|++.|.+      ++.+|.+|+||||.|+..|..++
T Consensus       174 e~~ml~D~~q~l~~-G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~------~~~~D~dgWtPlHAAA~Wg~~~~  246 (527)
T KOG0505|consen  174 EQTMLDDARQWLNA-GAELDARHARGATALHVAAANGYTEVAALLLQAGYS------VNIKDYDGWTPLHAAAHWGQEDA  246 (527)
T ss_pred             HHHHHHHHHHHHhc-cccccccccccchHHHHHHhhhHHHHHHHHHHhccC------cccccccCCCcccHHHHhhhHhH
Confidence                   1222222 333445555699999999999999999999999998      89999999999999999999999


Q ss_pred             HHHHHhhcccccccccccccCCCCCCHHHHHHH
Q 037085          139 VELLIRENSNRRIMIRINTVNKQGQTALQLCNA  171 (248)
Q Consensus       139 v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~  171 (248)
                      +++|+++|+      +.++....|.||+++|..
T Consensus       247 ~elL~~~ga------~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  247 CELLVEHGA------DMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHHHhhc------ccchhhhcCCCCccchhh
Confidence            999999998      899999999999999965

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.83  E-value=9e-21  Score=161.21  Aligned_cols=184  Identities=18%  Similarity=0.210  Sum_probs=159.5

Q ss_pred             cCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccC
Q 037085            4 LWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSN   83 (248)
Q Consensus         4 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~   83 (248)
                      .+++-.+..|.+|.|+||.||.+|+.+++++|++..+-+ +..+.+|.+|||+|+..|+.++++.++.+. +..+.....
T Consensus        37 trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e  114 (854)
T KOG0507|consen   37 TRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIE  114 (854)
T ss_pred             CCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcceEEehhhcCcchHHHHHHhcc-cCCCccccc
Confidence            456677889999999999999999999999999998877 677899999999999999999999999985 778889999


Q ss_pred             CCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccc--cccccccccCCC
Q 037085           84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNR--RIMIRINTVNKQ  161 (248)
Q Consensus        84 g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~~~~~~  161 (248)
                      |.||||.|+..+|.+++.+|+.++++      ...+|+.+.|+|-+|++.|..+++..|++..-..  ...+.-..++-.
T Consensus       115 ~~tplhlaaqhgh~dvv~~Ll~~~ad------p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~  188 (854)
T KOG0507|consen  115 NETPLHLAAQHGHLEVVFYLLKKNAD------PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFP  188 (854)
T ss_pred             CcCccchhhhhcchHHHHHHHhcCCC------ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCC
Confidence            99999999999999999999999998      6789999999999999999999999999862110  000111234556


Q ss_pred             CCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCC
Q 037085          162 GQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDA  199 (248)
Q Consensus       162 g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~  199 (248)
                      +.+|+|+|.++    ++.++++.|+.+|.+++....++
T Consensus       189 ~~~plHlaakn----gh~~~~~~ll~ag~din~~t~~g  222 (854)
T KOG0507|consen  189 AIYPLHLAAKN----GHVECMQALLEAGFDINYTTEDG  222 (854)
T ss_pred             CcCCcchhhhc----chHHHHHHHHhcCCCcccccccc
Confidence            78999999988    89999999999999998876554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.82  E-value=7.5e-20  Score=165.43  Aligned_cols=178  Identities=17%  Similarity=0.108  Sum_probs=136.5

Q ss_pred             cCCCCHHHHHHhCCCHHHHHHHHhc--CcchhhhhcCCCCcHHH-HHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 037085           14 QRGETTMHLLSTDGDARMVRIFGEN--NRELCLEVDNSLMIPLH-RAALEGDSDVIRALVSICPESLEKLTSNGETALHL   90 (248)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~   90 (248)
                      ..++..|+.|+..|+.+.++.+++.  +.++ +..|..|.|||| .|+.+++.++++.|++.+.     .+..|.||||.
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~i-n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~   88 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNI-NCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHA   88 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCC-CCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHH
Confidence            3568899999999999999999998  6666 678899999999 8889999999999998753     56789999999


Q ss_pred             HHHcCChHHHHHHHHHHhccccc--------cccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccC---
Q 037085           91 AVKKSRSDAFQALVDEAKSHRKE--------HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN---  159 (248)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~--------~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~---  159 (248)
                      |+. +..+.++.++.........        ......+..|.||||+|+..++.+++++|+++|+      +++.++   
T Consensus        89 A~~-~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GA------dv~~~~~~~  161 (743)
T TIGR00870        89 ISL-EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGA------SVPARACGD  161 (743)
T ss_pred             HHh-ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCC------CCCcCcCCc
Confidence            987 3333333333332211000        0011233579999999999999999999999998      555442   


Q ss_pred             -----------CCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccccc
Q 037085          160 -----------KQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQT  209 (248)
Q Consensus       160 -----------~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~  209 (248)
                                 ..|.|||+.|+..    ++.+++++|++.|++++.++..+.+ +++.+..
T Consensus       162 ~~~~~~~~~~~~~g~tpL~~Aa~~----~~~~iv~lLl~~gadin~~d~~g~T-~Lh~A~~  217 (743)
T TIGR00870       162 FFVKSQGVDSFYHGESPLNAAACL----GSPSIVALLSEDPADILTADSLGNT-LLHLLVM  217 (743)
T ss_pred             hhhcCCCCCcccccccHHHHHHHh----CCHHHHHHHhcCCcchhhHhhhhhH-HHHHHHh
Confidence                       3589999999987    7899999999999998887765544 6665543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.5e-19  Score=144.34  Aligned_cols=126  Identities=16%  Similarity=0.155  Sum_probs=106.5

Q ss_pred             hhhcCCCCcH-HHHHHHhCCHHHHHHHHHhCchhhhhh----ccCCCcHHHHHHHcCChHHHHHHHHHHhcccccccccc
Q 037085           44 LEVDNSLMIP-LHRAALEGDSDVIRALVSICPESLEKL----TSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTW  118 (248)
Q Consensus        44 ~~~~~~g~t~-L~~A~~~g~~~~~~~Ll~~~~~~~~~~----~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  118 (248)
                      ..+|..|.|+ ||.|+..|+.+++++|++.|. +++.+    +..|.||||+|+..++.+++++|+++|++      ++.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GA-diN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD------VN~   98 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGA-DPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD------VNR   98 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCC-CccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------cCc
Confidence            4456777765 566778899999999999965 46665    46899999999999999999999999998      887


Q ss_pred             c-cCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHH
Q 037085          119 K-DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQ  186 (248)
Q Consensus       119 ~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~  186 (248)
                      + +..|.||||+|+..++.+++++|+..|+      +++.+|..|.||||+|+..    ...+++.++.
T Consensus        99 ~~~~~g~TpLh~Aa~~~~~eivklLL~~GA------din~kd~~G~TpL~~A~~~----~~~~~~~~~~  157 (300)
T PHA02884         99 YAEEAKITPLYISVLHGCLKCLEILLSYGA------DINIQTNDMVTPIELALMI----CNNFLAFMIC  157 (300)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHh----CChhHHHHhc
Confidence            5 4689999999999999999999999998      8999999999999999876    3445554443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=1.3e-19  Score=128.78  Aligned_cols=119  Identities=21%  Similarity=0.156  Sum_probs=108.6

Q ss_pred             HHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhC
Q 037085           54 LHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLN  133 (248)
Q Consensus        54 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~  133 (248)
                      +-+|+..+..+.|+.||+..+..++.+|.+|.||||-|+.+|+.+|++.|+..|++      .+.+...|+||||.||.-
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn------~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN------KEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC------cccccccCccchhhhhcc
Confidence            56899999999999999998999999999999999999999999999999999999      889999999999999999


Q ss_pred             CcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHH
Q 037085          134 KLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR  187 (248)
Q Consensus       134 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~  187 (248)
                      .+.+++.+|+++|+      |+|+..+...||||+|+.+.   .....+++|+.
T Consensus       141 nN~~va~~LLqhga------DVnA~t~g~ltpLhlaa~~r---n~r~t~~~Ll~  185 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGA------DVNAQTKGLLTPLHLAAGNR---NSRDTLELLLH  185 (228)
T ss_pred             cchhHHHHHHhccC------cccccccccchhhHHhhccc---chHHHHHHHhh
Confidence            99999999999998      99999999999999999774   33445555553

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.81  E-value=3.2e-19  Score=153.33  Aligned_cols=165  Identities=22%  Similarity=0.270  Sum_probs=139.3

Q ss_pred             HhhhccCCCCHHHHHHhC---CCHHHHHHHHhcCcchhhh----hcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhh-
Q 037085            9 ASIKNQRGETTMHLLSTD---GDARMVRIFGENNRELCLE----VDNSLMIPLHRAALEGDSDVIRALVSICPESLEKL-   80 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~----~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~-   80 (248)
                      .+.+..-|+|+||.|..+   ++.++++.|++..+...+.    -...|+||||+|+.+.+.++|++|++.+++ ++++ 
T Consensus       136 ~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gAD-V~aRa  214 (782)
T KOG3676|consen  136 LNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGAD-VHARA  214 (782)
T ss_pred             cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCc-hhhHh
Confidence            344566799999999974   5569999999988765432    244799999999999999999999998554 4332 


Q ss_pred             --------cc--------------CCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHH
Q 037085           81 --------TS--------------NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQI  138 (248)
Q Consensus        81 --------~~--------------~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~  138 (248)
                              |.              .|+.||.+|+..++++++++|+++|++      ++.+|..|+|.||..+..-..++
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd------~~aqDS~GNTVLH~lVi~~~~~M  288 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD------PNAQDSNGNTVLHMLVIHFVTEM  288 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC------CCccccCCChHHHHHHHHHHHHH
Confidence                    11              378899999999999999999999999      99999999999999999999999


Q ss_pred             HHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHh
Q 037085          139 VELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRA  188 (248)
Q Consensus       139 v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~  188 (248)
                      ...++++|+++    ....+|+.|.|||.+|++.    +..+|.+.+++.
T Consensus       289 y~~~L~~ga~~----l~~v~N~qgLTPLtLAakl----Gk~emf~~ile~  330 (782)
T KOG3676|consen  289 YDLALELGANA----LEHVRNNQGLTPLTLAAKL----GKKEMFQHILER  330 (782)
T ss_pred             HHHHHhcCCCc----cccccccCCCChHHHHHHh----hhHHHHHHHHHh
Confidence            99999999841    3778999999999999988    677777777776

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=1.1e-19  Score=142.98  Aligned_cols=186  Identities=19%  Similarity=0.155  Sum_probs=143.2

Q ss_pred             CHHHHHHHHhcCc--------chhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHc-----
Q 037085           28 DARMVRIFGENNR--------ELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKK-----   94 (248)
Q Consensus        28 ~~~~v~~Ll~~~~--------~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~-----   94 (248)
                      +.+.|+..+....        .+.+.-|.+|.|+|||++.+++.++|+.||+.+-++++..++-|+||+++++..     
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~  317 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQP  317 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcch
Confidence            5566665554322        223667999999999999999999999999999899999999999999998754     


Q ss_pred             CChHHHHHHHHHHhcccccccccccc-CCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcC
Q 037085           95 SRSDAFQALVDEAKSHRKEHLFTWKD-KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANS  173 (248)
Q Consensus        95 ~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~  173 (248)
                      .+.++|+.|+..|.       +|.+- .-|+|+|++|+.+|+.++|+.||..|+      |+|..|.+|-|+|++|++. 
T Consensus       318 ~d~~vV~~LF~mgn-------VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgA------dVNiQDdDGSTALMCA~EH-  383 (452)
T KOG0514|consen  318 ADRTVVERLFKMGD-------VNAKASQHGQTALMLAVSHGRVDMVKALLACGA------DVNIQDDDGSTALMCAAEH-  383 (452)
T ss_pred             hhHHHHHHHHhccC-------cchhhhhhcchhhhhhhhcCcHHHHHHHHHccC------CCccccCCccHHHhhhhhh-
Confidence            45778999988753       55544 679999999999999999999999998      9999999999999999998 


Q ss_pred             CCchHHHHHHHHHHh-hhhcCCCCCCCCCccccccccCCchhhhhhHHHHHHHHHHHHHHhhcCC
Q 037085          174 QDSVFKEIGWIIQRA-VAQQSPQLPDAGSANVSWNQTRWPIETRNVLLMVVVTIAAAFFTVTCNL  237 (248)
Q Consensus       174 ~~~~~~~i~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~f~~~~~~  237 (248)
                         ++++|+++|+.. +.+..-.+.|+.+ .+..+   |...+++   +...|.+...|..++.+
T Consensus       384 ---GhkEivklLLA~p~cd~sLtD~DgST-Al~IA---leagh~e---Ia~mlYa~~n~~~s~~p  438 (452)
T KOG0514|consen  384 ---GHKEIVKLLLAVPSCDISLTDVDGST-ALSIA---LEAGHRE---IAVMLYAHMNIKRSKLP  438 (452)
T ss_pred             ---ChHHHHHHHhccCcccceeecCCCch-hhhhH---HhcCchH---HHHHHHHHHHhhhhcCC
Confidence               899999999953 4444444444444 44333   2233333   33445566777776654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.80  E-value=1.1e-19  Score=154.70  Aligned_cols=187  Identities=20%  Similarity=0.161  Sum_probs=157.1

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT   81 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   81 (248)
                      |.....+....+..|.+|||+|+..|+.++++.++.++... +.....|.||||.|++.|+.+++.+|++++. +.-.++
T Consensus        68 lle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~~~a-dp~i~n  145 (854)
T KOG0507|consen   68 LLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLKKNA-DPFIRN  145 (854)
T ss_pred             HhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHhcCC-CccccC
Confidence            33445567778899999999999999999999999999554 8889999999999999999999999999854 466788


Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHHhcccc--ccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccC
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEAKSHRK--EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN  159 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  159 (248)
                      ..+.|+|-+|++.|..++++.|+...-....  ......++-.+.+|||+|+.+|+.++++.|++.|.      |+|...
T Consensus       146 ns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~------din~~t  219 (854)
T KOG0507|consen  146 NSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF------DINYTT  219 (854)
T ss_pred             cccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC------Cccccc
Confidence            9999999999999999999999987222111  00123455667799999999999999999999996      888888


Q ss_pred             CCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCC
Q 037085          160 KQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGS  201 (248)
Q Consensus       160 ~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~  201 (248)
                      ..| |+||.|+.+    +..+++.+|++.|.........++.
T Consensus       220 ~~g-talheaalc----gk~evvr~ll~~gin~h~~n~~~qt  256 (854)
T KOG0507|consen  220 EDG-TALHEAALC----GKAEVVRFLLEIGINTHIKNQHGQT  256 (854)
T ss_pred             ccc-hhhhhHhhc----CcchhhhHHHhhccccccccccchH
Confidence            877 999999988    7899999999999988776655544

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=3.7e-19  Score=136.29  Aligned_cols=135  Identities=19%  Similarity=0.270  Sum_probs=116.7

Q ss_pred             chhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCC
Q 037085            6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGE   85 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   85 (248)
                      ....+..|..|.+|||+||+.|+..+++.|+.+|+.+ +..+....||||+|+.+||.++++.|++. ..+++.++..|.
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~-kadvnavnehgn  101 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSR-KADVNAVNEHGN  101 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHH-hcccchhhccCC
Confidence            4456788999999999999999999999999999998 78888889999999999999999999998 556999999999


Q ss_pred             cHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccc
Q 037085           86 TALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN  148 (248)
Q Consensus        86 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  148 (248)
                      ||||+||.-|...+++-|+.+|+.      ++.-+++|.|||..|-..-...+.+.--++|.+
T Consensus       102 tplhyacfwgydqiaedli~~ga~------v~icnk~g~tpldkakp~l~~~l~e~aek~gq~  158 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLISCGAA------VNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQS  158 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHhccce------eeecccCCCCchhhhchHHHHHHHHHHHHhCCC
Confidence            999999999999999999999988      899999999999988543333333333345554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.78  E-value=5.4e-18  Score=145.82  Aligned_cols=161  Identities=14%  Similarity=0.139  Sum_probs=132.1

Q ss_pred             CCHHHHHHhCC--CHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCC--CcHHHHHH
Q 037085           17 ETTMHLLSTDG--DARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNG--ETALHLAV   92 (248)
Q Consensus        17 ~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g--~t~lh~a~   92 (248)
                      +-.||.-..++  +.+++++|++.|.+..   ......+++.|+..|+.+++++|+++| .+++.+|..|  .||||+|.
T Consensus       307 q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~G-ADIN~kD~~g~~~TpLh~A~  382 (631)
T PHA02792        307 QDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNG-NVVVEDDDNIINIMPLFPTL  382 (631)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcC-CchhhhcCCCCChhHHHHHH
Confidence            34567777776  7799999999999862   223566799999999999999999995 4577777764  69999987


Q ss_pred             HcCCh---HHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHH
Q 037085           93 KKSRS---DAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC  169 (248)
Q Consensus        93 ~~~~~---~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a  169 (248)
                      .....   +++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +++.+|..|+|||++|
T Consensus       383 ~n~~~~v~~IlklLIs~GAD------IN~kD~~G~TPLh~Aa~~~n~eivelLLs~GA------DIN~kD~~G~TpL~~A  450 (631)
T PHA02792        383 SIHESDVLSILKLCKPYIDD------INKIDKHGRSILYYCIESHSVSLVEWLIDNGA------DINITTKYGSTCIGIC  450 (631)
T ss_pred             HhccHhHHHHHHHHHhcCCc------cccccccCcchHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHH
Confidence            76654   467888999988      89999999999999999999999999999998      8999999999999999


Q ss_pred             HHcCC------CchHHHHHHHHHHhhhhcC
Q 037085          170 NANSQ------DSVFKEIGWIIQRAVAQQS  193 (248)
Q Consensus       170 ~~~~~------~~~~~~i~~~L~~~g~~~~  193 (248)
                      +....      .....++++.|+++|+++.
T Consensus       451 ~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        451 VILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            76211      1235678999999886654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.78  E-value=3.8e-18  Score=120.17  Aligned_cols=125  Identities=30%  Similarity=0.501  Sum_probs=112.5

Q ss_pred             hhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 037085           11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHL   90 (248)
Q Consensus        11 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~   90 (248)
                      ..|.+|.||||+|+..++.++++.|++.+... ...+..|.||||.|+..++.++++.|++.+. ..+..+..+.||+|+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~   79 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA-DVNARDKDGNTPLHL   79 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHH
Confidence            35678999999999999999999999999887 6788899999999999999999999999854 466777889999999


Q ss_pred             HHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHH
Q 037085           91 AVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI  143 (248)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  143 (248)
                      |+..++.+++++|+.++..      .+..+..+.||+++|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGAD------VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCC------CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999998766      7778899999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=2.3e-18  Score=114.45  Aligned_cols=83  Identities=31%  Similarity=0.492  Sum_probs=60.7

Q ss_pred             HHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhC
Q 037085           54 LHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLN  133 (248)
Q Consensus        54 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~  133 (248)
                      ||+|++.|+.++++.|++.+. ..+.    |.||||+|+..|+.+++++|+++|++      ++.+|..|+||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~-~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGA-DINL----GNTALHYAAENGNLEIVKLLLENGAD------INSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTS-TTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC------TT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCcC-CCCC----CCCHHHHHHHcCCHHHHHHHHHhccc------ccccCCCCCCHHHHHHHc
Confidence            577777777777777777542 2322    67777777777777777777777776      677777788888888888


Q ss_pred             CcHHHHHHHHhhcc
Q 037085          134 KLKQIVELLIRENS  147 (248)
Q Consensus       134 ~~~~~v~~Ll~~g~  147 (248)
                      ++.+++++|+++|+
T Consensus        70 ~~~~~~~~Ll~~g~   83 (89)
T PF12796_consen   70 GNLEIVKLLLEHGA   83 (89)
T ss_dssp             THHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHcCC
Confidence            88888888887776

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=1.3e-17  Score=117.40  Aligned_cols=123  Identities=31%  Similarity=0.473  Sum_probs=110.2

Q ss_pred             hcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCc
Q 037085           46 VDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNT  125 (248)
Q Consensus        46 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t  125 (248)
                      ++.+|.||||+|+..++.++++.|++.+.. .+..+..|.+|+|.|+..+..+++++|+..+..      ++..+..|.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~------~~~~~~~~~~   75 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD------VNARDKDGNT   75 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCC
Confidence            467899999999999999999999998544 477888999999999999999999999999875      7778899999


Q ss_pred             HhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHH
Q 037085          126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWII  185 (248)
Q Consensus       126 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L  185 (248)
                      |+|+|+..++.+++++|++.+.      +.+..+..|.||+++|...    ...+++++|
T Consensus        76 ~l~~a~~~~~~~~~~~L~~~~~------~~~~~~~~~~~~l~~~~~~----~~~~~~~~L  125 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLKHGA------DVNARDKDGRTPLHLAAKN----GHLEVVKLL  125 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcCC------CCcccCCCCCCHHHHHHhc----CCHHHHHHh
Confidence            9999999999999999999885      7888999999999999877    566777766

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=6.8e-18  Score=112.17  Aligned_cols=84  Identities=20%  Similarity=0.389  Sum_probs=76.1

Q ss_pred             HHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHH
Q 037085           20 MHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDA   99 (248)
Q Consensus        20 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~   99 (248)
                      ||+|++.|+.++++.|++.+.++ +.    |.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENG-ADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTT-TCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhc-ccccccCCCCCCHHHHHHHcCCHHH
Confidence            79999999999999999988776 22    899999999999999999999985 5688889999999999999999999


Q ss_pred             HHHHHHHHhc
Q 037085          100 FQALVDEAKS  109 (248)
Q Consensus       100 ~~~Ll~~~~~  109 (248)
                      +++|+++|++
T Consensus        75 ~~~Ll~~g~~   84 (89)
T PF12796_consen   75 VKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHTTT-
T ss_pred             HHHHHHcCCC
Confidence            9999999887

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.70  E-value=1.9e-16  Score=100.96  Aligned_cols=103  Identities=19%  Similarity=0.250  Sum_probs=89.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHh
Q 037085           53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATL  132 (248)
Q Consensus        53 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~  132 (248)
                      -+.+++++|..+-|+..+..+ ..++.. -.|++|||+|+..|+.+++++|+..|++      ++.+|++|-|||-.|++
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g-~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~------i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEG-LNVNEI-YGGRTPLHYAADYGQLSILEFLISIGAN------IQDKDKYGITPLLSAVW   76 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcc-ccHHHH-hCCcccchHhhhcchHHHHHHHHHhccc------cCCccccCCcHHHHHHH
Confidence            467889999999999999885 444443 3899999999999999999999999999      99999999999999999


Q ss_pred             CCcHHHHHHHHhhcccccccccccccCCCCCCHHHHH
Q 037085          133 NKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC  169 (248)
Q Consensus       133 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a  169 (248)
                      .|+.++|++|++.|+      |...+-.+|.+.+..+
T Consensus        77 EGH~~cVklLL~~GA------drt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGA------DRTIHAPDGTALIEAT  107 (117)
T ss_pred             HhhHHHHHHHHHcCc------ccceeCCCchhHHhhc
Confidence            999999999999998      6777888887777654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.68  E-value=1.5e-16  Score=140.57  Aligned_cols=178  Identities=18%  Similarity=0.238  Sum_probs=160.6

Q ss_pred             hhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 037085           11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHL   90 (248)
Q Consensus        11 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~   90 (248)
                      ....+-.|+|..||..|+.+.+++|+.+|+++ ..+|..|++||.+|+-.||..+|+.|+....+...+.|+.+.|+|.+
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~rgani-ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVVRGANI-EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSL  830 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHHhcccc-cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEE
Confidence            33455689999999999999999999999998 88999999999999999999999999998777677889999999999


Q ss_pred             HHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccccccccccccc--CCCCCCHHHH
Q 037085           91 AVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV--NKQGQTALQL  168 (248)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~--~~~g~tpl~~  168 (248)
                      |+..|+.+++++|+..|++      -..++....|||.+|...|..+++..|+..|+      .+|.+  .+.|..||++
T Consensus       831 acsggr~~vvelLl~~gan------kehrnvsDytPlsla~Sggy~~iI~~llS~Gs------eInSrtgSklgisPLml  898 (2131)
T KOG4369|consen  831 ACSGGRTRVVELLLNAGAN------KEHRNVSDYTPLSLARSGGYTKIIHALLSSGS------EINSRTGSKLGISPLML  898 (2131)
T ss_pred             ecCCCcchHHHHHHHhhcc------ccccchhhcCchhhhcCcchHHHHHHHhhccc------ccccccccccCcchhhh
Confidence            9999999999999999988      67788889999999999999999999999998      45555  5678999999


Q ss_pred             HHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccc
Q 037085          169 CNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVS  205 (248)
Q Consensus       169 a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~  205 (248)
                      |..+    ++.+..+.|++.|-+++.+...+..+.+-
T Consensus       899 atmn----gh~~at~~ll~~gsdiNaqIeTNrnTalt  931 (2131)
T KOG4369|consen  899 ATMN----GHQAATLSLLQPGSDINAQIETNRNTALT  931 (2131)
T ss_pred             hhhc----cccHHHHHHhcccchhcccccccccccee
Confidence            9988    78899999999999999999887766543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.66  E-value=1.1e-15  Score=131.85  Aligned_cols=184  Identities=17%  Similarity=0.216  Sum_probs=142.6

Q ss_pred             cccCchhHhhh----ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhh---------c--------------CCCCcHH
Q 037085            2 ARLWPQLASIK----NQRGETTMHLLSTDGDARMVRIFGENNRELCLEV---------D--------------NSLMIPL   54 (248)
Q Consensus         2 l~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---------~--------------~~g~t~L   54 (248)
                      |+..|.+++..    ...|+|+||+|+.+.+.++|++|++.|+++. .+         |              ..|+.||
T Consensus       166 L~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~-aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPL  244 (782)
T KOG3676|consen  166 LEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVH-ARACGAFFCPDDQKASRKSTNYTGYFYFGEYPL  244 (782)
T ss_pred             HHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchh-hHhhccccCcccccccccccCCcceeeeccCch
Confidence            44556666643    4569999999999999999999999999873 22         1              1378999


Q ss_pred             HHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCC
Q 037085           55 HRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNK  134 (248)
Q Consensus        55 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~  134 (248)
                      -.|+-.++.|++++|+++ +.+++.+|..|+|.||..+..-..++..+++++|++    .+...+|..|-|||.+|+..|
T Consensus       245 SfAAC~nq~eivrlLl~~-gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~----~l~~v~N~qgLTPLtLAaklG  319 (782)
T KOG3676|consen  245 SFAACTNQPEIVRLLLAH-GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN----ALEHVRNNQGLTPLTLAAKLG  319 (782)
T ss_pred             HHHHHcCCHHHHHHHHhc-CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC----ccccccccCCCChHHHHHHhh
Confidence            999999999999999997 567999999999999999999889999999999887    346779999999999999999


Q ss_pred             cHHHHHHHHhh-cc-------cccccccccccCCC--CCCHHHHHHHcCCCchHH----HHHHHHHHhhhhc
Q 037085          135 LKQIVELLIRE-NS-------NRRIMIRINTVNKQ--GQTALQLCNANSQDSVFK----EIGWIIQRAVAQQ  192 (248)
Q Consensus       135 ~~~~v~~Ll~~-g~-------~~~~~~~~~~~~~~--g~tpl~~a~~~~~~~~~~----~i~~~L~~~g~~~  192 (248)
                      ..++.+.+++. ..       --.-.+|++..|..  ..+.|.+.+.. ....+.    ++++.|++..++.
T Consensus       320 k~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg-~~~eHl~Ll~~~i~~LL~~KW~~  390 (782)
T KOG3676|consen  320 KKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG-IKNEHLELLDGPIEELLEDKWKA  390 (782)
T ss_pred             hHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC-CcHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999998 22       11112456666654  34566666554 333333    4556666655554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.66  E-value=1.1e-15  Score=118.56  Aligned_cols=129  Identities=23%  Similarity=0.357  Sum_probs=115.6

Q ss_pred             hhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCC-----HHHHHHHHHhCc--hhhhhhccC
Q 037085           11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGD-----SDVIRALVSICP--ESLEKLTSN   83 (248)
Q Consensus        11 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~~~~Ll~~~~--~~~~~~~~~   83 (248)
                      ..+..+.+++|.++..+..+++++++..+.++ +.++..|.||||+|+..++     .+++++|++.+.  ...+..+..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            34455889999999999999999999999998 8899999999999999999     999999999877  567777999


Q ss_pred             CCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhc
Q 037085           84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN  146 (248)
Q Consensus        84 g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g  146 (248)
                      |.||||+|+..|+.+++++|++.+++      ++.++..|.|+++.|+..++.++++.+++.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGAD------PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCC------CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999888      7778999999999999999999999998864

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.65  E-value=3.5e-15  Score=115.85  Aligned_cols=130  Identities=29%  Similarity=0.383  Sum_probs=117.9

Q ss_pred             hhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCC-----hHHHHHHHHHHh--cccccccc
Q 037085           44 LEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSR-----SDAFQALVDEAK--SHRKEHLF  116 (248)
Q Consensus        44 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~-----~~~~~~Ll~~~~--~~~~~~~~  116 (248)
                      ...+..+.+++|.++..+..+++++++..+.+ ++.++..|.||||+|+..++     .++++.|++.|+  ..     .
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~-----~  140 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV-----N  140 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCC-cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC-----c
Confidence            45566789999999999999999999998555 59999999999999999999     999999999998  31     6


Q ss_pred             ccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhh
Q 037085          117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAV  189 (248)
Q Consensus       117 ~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g  189 (248)
                      +.+|..|.||||+|+..|+.+++++|++.|+      +++.++..|.|+++.|+..    +..+++..+.+.+
T Consensus       141 ~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~------~~~~~~~~g~t~l~~a~~~----~~~~~~~~l~~~~  203 (235)
T COG0666         141 NLRDEDGNTPLHWAALNGDADIVELLLEAGA------DPNSRNSYGVTALDPAAKN----GRIELVKLLLDKG  203 (235)
T ss_pred             cccCCCCCchhHHHHHcCchHHHHHHHhcCC------CCcccccCCCcchhhhccc----chHHHHHHHHhcC
Confidence            7789999999999999999999999999998      7888899999999999887    7889999999876

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.60  E-value=8.9e-15  Score=93.36  Aligned_cols=104  Identities=19%  Similarity=0.219  Sum_probs=89.5

Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCC
Q 037085           17 ETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSR   96 (248)
Q Consensus        17 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~   96 (248)
                      ...+.|++++|.++-|+..+..+.++...  ..|++|||+|+..|+.+++++|+..+ ..++.+|+.|-|||..|+..||
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iG-A~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIG-ANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhc-cccCCccccCCcHHHHHHHHhh
Confidence            35678999999999999999998776433  38999999999999999999999984 5689999999999999999999


Q ss_pred             hHHHHHHHHHHhccccccccccccCCCCcHhHH
Q 037085           97 SDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHL  129 (248)
Q Consensus        97 ~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~  129 (248)
                      .++|++|++.|++      -..+.-+|.+.+..
T Consensus        80 ~~cVklLL~~GAd------rt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   80 RDCVKLLLQNGAD------RTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHHHHcCcc------cceeCCCchhHHhh
Confidence            9999999999998      55566677665543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.54  E-value=4.6e-15  Score=131.36  Aligned_cols=135  Identities=19%  Similarity=0.205  Sum_probs=103.0

Q ss_pred             chhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCC
Q 037085            6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGE   85 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   85 (248)
                      ...+..+|+.|.+||-+|+-.||..+|+.|++..+++.-+.|..+.|+|.+||..|..+++++||..+.. -..++-...
T Consensus       780 ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gan-kehrnvsDy  858 (2131)
T KOG4369|consen  780 GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGAN-KEHRNVSDY  858 (2131)
T ss_pred             cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhcc-ccccchhhc
Confidence            3445677889999999999999999999999998888777888899999999999999999999987543 445566677


Q ss_pred             cHHHHHHHcCChHHHHHHHHHHhcccccccccccc--CCCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085           86 TALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD--KEGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus        86 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~--~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                      |||.+|...|..++++.|+..|..      ++.+.  +.|-.||++|...|+...++.|++.|.
T Consensus       859 tPlsla~Sggy~~iI~~llS~Gse------InSrtgSklgisPLmlatmngh~~at~~ll~~gs  916 (2131)
T KOG4369|consen  859 TPLSLARSGGYTKIIHALLSSGSE------INSRTGSKLGISPLMLATMNGHQAATLSLLQPGS  916 (2131)
T ss_pred             CchhhhcCcchHHHHHHHhhcccc------cccccccccCcchhhhhhhccccHHHHHHhcccc
Confidence            888888888888888888888766      33332  455666666666666666666666554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=3.3e-14  Score=84.90  Aligned_cols=54  Identities=28%  Similarity=0.516  Sum_probs=34.9

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHH
Q 037085           16 GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV   70 (248)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll   70 (248)
                      |.|+||+|+..|+.+++++|++++.++ +.+|.+|.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567777777777777777777777666 555777777777777777777777765

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.53  E-value=8.4e-15  Score=87.99  Aligned_cols=48  Identities=35%  Similarity=0.472  Sum_probs=29.0

Q ss_pred             cccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHH
Q 037085          116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC  169 (248)
Q Consensus       116 ~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a  169 (248)
                      ++.+|..|+||||+|+..|+.+++++|++.|+      |++.+|..|+||+|+|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~------d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGA------DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHCT--------TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcC------CCCCCcCCCCCHHHhC
Confidence            77888888888888888888888888887776      7888888888888876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.50  E-value=8.1e-14  Score=124.13  Aligned_cols=111  Identities=23%  Similarity=0.259  Sum_probs=92.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHh
Q 037085           53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATL  132 (248)
Q Consensus        53 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~  132 (248)
                      .|+.|+..|+.++++.|++.+ .+++.+|..|.||||+|+..|+.+++++|+++|++      ++.+|..|.||||+|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~G-adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad------vn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGG-ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD------PTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHH
Confidence            478899999999999999984 45788899999999999999999999999999988      88999999999999999


Q ss_pred             CCcHHHHHHHHhhcc-cccccccccccCCCCCCHHHHHH
Q 037085          133 NKLKQIVELLIRENS-NRRIMIRINTVNKQGQTALQLCN  170 (248)
Q Consensus       133 ~~~~~~v~~Ll~~g~-~~~~~~~~~~~~~~g~tpl~~a~  170 (248)
                      .++.+++++|++++. +...+.+.+..+..|.+|+..+.
T Consensus       158 ~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999999998811 11112266777777777766553

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.49  E-value=7.1e-14  Score=83.44  Aligned_cols=53  Identities=30%  Similarity=0.469  Sum_probs=24.0

Q ss_pred             CCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHH
Q 037085           84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL  142 (248)
Q Consensus        84 g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L  142 (248)
                      |.||||+|+..|+.+++++|+++|.+      ++.+|.+|+||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d------in~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD------INAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG------TT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34555555555555555555554444      444455555555555555555555544

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.48  E-value=3e-14  Score=85.54  Aligned_cols=50  Identities=30%  Similarity=0.431  Sum_probs=16.7

Q ss_pred             hhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHH
Q 037085           75 ESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLA  130 (248)
Q Consensus        75 ~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A  130 (248)
                      .+++.+|..|.||||+|+..|+.+++++|++.+++      ++.+|..|+||||+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d------~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD------PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--------TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC------CCCCcCCCCCHHHhC
Confidence            34444444455555555555555555554444444      444455555555443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.47  E-value=1.5e-13  Score=122.38  Aligned_cols=105  Identities=23%  Similarity=0.227  Sum_probs=93.4

Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChH
Q 037085           19 TMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSD   98 (248)
Q Consensus        19 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~   98 (248)
                      .|+.|+..|+.++++.|++.+.++ +.+|..|.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..++.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G-advn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcHH
Confidence            488999999999999999999998 788999999999999999999999999984 558899999999999999999999


Q ss_pred             HHHHHHHH-------HhccccccccccccCCCCcHhHHHH
Q 037085           99 AFQALVDE-------AKSHRKEHLFTWKDKEGNTVLHLAT  131 (248)
Q Consensus        99 ~~~~Ll~~-------~~~~~~~~~~~~~~~~g~t~Lh~A~  131 (248)
                      ++++|+.+       +++      .+..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~------~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGAN------AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCC------CCccccCCCCccchhh
Confidence            99999988       554      6667777777766554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=2.2e-13  Score=112.44  Aligned_cols=126  Identities=20%  Similarity=0.252  Sum_probs=105.4

Q ss_pred             CCcHHH---HHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcH
Q 037085           50 LMIPLH---RAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTV  126 (248)
Q Consensus        50 g~t~L~---~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~  126 (248)
                      .++||-   -|+-.|-.|+|+.++.. -.++...+.+|.|+||-|+..||.+||++|++.|++      +|..|.+|+||
T Consensus       547 rfnPLaLLLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan------VNa~DSdGWTP  619 (752)
T KOG0515|consen  547 RFNPLALLLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN------VNAADSDGWTP  619 (752)
T ss_pred             ecchHHHHHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc------ccCccCCCCch
Confidence            345543   46778999999999987 455777788999999999999999999999999999      99999999999


Q ss_pred             hHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhh
Q 037085          127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAV  189 (248)
Q Consensus       127 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g  189 (248)
                      ||+|+.-++..+++.|++.|+     +-+-..-.++.||.+-+-+.  .+++..+.++|....
T Consensus       620 LHCAASCNnv~~ckqLVe~Ga-----avfAsTlSDmeTa~eKCee~--eeGY~~CsqyL~~vq  675 (752)
T KOG0515|consen  620 LHCAASCNNVPMCKQLVESGA-----AVFASTLSDMETAAEKCEEM--EEGYDQCSQYLYGVQ  675 (752)
T ss_pred             hhhhhhcCchHHHHHHHhccc-----eEEeeecccccchhhhcchh--hhhHHHHHHHHHHHH
Confidence            999999999999999999998     23344456788998887655  457888999987543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.45  E-value=6.3e-13  Score=102.22  Aligned_cols=124  Identities=17%  Similarity=0.184  Sum_probs=104.7

Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHc
Q 037085           15 RGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKK   94 (248)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~   94 (248)
                      .-..+|.-++..++.+-...|++....+ +.+|..|.+||..|+..|+.++++.||+.+.+.....+..+.||||+|+.+
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            3457888899999999888888886666 788999999999999999999999999987665556677889999999999


Q ss_pred             CChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhh
Q 037085           95 SRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRE  145 (248)
Q Consensus        95 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  145 (248)
                      |+.++.++|++.|+.      ....+.-|+|+-.+|+.-|+.++|..+-.+
T Consensus        90 Gn~dvcrllldaGa~------~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGAR------MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CCchHHHHHHhccCc------cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999888      667788899999999999998888776443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=1.4e-12  Score=107.84  Aligned_cols=118  Identities=16%  Similarity=0.191  Sum_probs=101.1

Q ss_pred             HHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHH
Q 037085           20 MHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDA   99 (248)
Q Consensus        20 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~   99 (248)
                      |.-|+..|-+++|+.++..-.++ ...+..|.|+||-|+-.||++||++|++. +.++|..|++|+||||.|+..++..+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~-ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEF-GANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhc-CCcccCccCCCCchhhhhhhcCchHH
Confidence            34578889999999999988887 77899999999999999999999999998 56699999999999999999999999


Q ss_pred             HHHHHHHHhccccccccccccCCCCcHhHHHH--hCCcHHHHHHHHh
Q 037085          100 FQALVDEAKSHRKEHLFTWKDKEGNTVLHLAT--LNKLKQIVELLIR  144 (248)
Q Consensus       100 ~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~--~~~~~~~v~~Ll~  144 (248)
                      ++.|++.|+..     +-..-.++.|+..-+-  ..|...+.++|..
T Consensus       632 ckqLVe~Gaav-----fAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  632 CKQLVESGAAV-----FASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHhccceE-----EeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999874     4445567788876664  4577888888854

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.36  E-value=5.7e-12  Score=97.03  Aligned_cols=120  Identities=23%  Similarity=0.218  Sum_probs=104.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHH
Q 037085           50 LMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHL  129 (248)
Q Consensus        50 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~  129 (248)
                      -..||.-++..+..+-...||+. -..++.+|.+|.|+|..|+..|+.+++++|++.|++.+     ..++.-+.||||.
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN-----~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN-----DKQHGTLYTPLMF   85 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC-----cccccccccHHHH
Confidence            35789999999999999999987 45589999999999999999999999999999999932     3466789999999


Q ss_pred             HHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHH
Q 037085          130 ATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWII  185 (248)
Q Consensus       130 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L  185 (248)
                      |+..|+.++.+.|++.|+      .....|.-|+|+-..|+.-    ++.+++.++
T Consensus        86 AALSGn~dvcrllldaGa------~~~~vNsvgrTAaqmAAFV----G~H~CV~iI  131 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGA------RMYLVNSVGRTAAQMAAFV----GHHECVAII  131 (396)
T ss_pred             HHHcCCchHHHHHHhccC------ccccccchhhhHHHHHHHh----cchHHHHHH
Confidence            999999999999999998      6777899999999999876    455555443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.05  E-value=2e-10  Score=94.05  Aligned_cols=93  Identities=22%  Similarity=0.271  Sum_probs=67.9

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAV   92 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~   92 (248)
                      ..++...+++|++.|++..++.+.-.+.+. ..+|.+..|+||.|+..|+.+++++|++.+..+++.+|..|+|||.-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            445566777777777777777777777776 6677777777777777777777777777777677777777777777777


Q ss_pred             HcCChHHHHHHHHH
Q 037085           93 KKSRSDAFQALVDE  106 (248)
Q Consensus        93 ~~~~~~~~~~Ll~~  106 (248)
                      .++|.+++++|-+.
T Consensus       582 ~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEA  595 (622)
T ss_pred             hcCcHHHHHHHHHH
Confidence            77777777777554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.00  E-value=4.7e-10  Score=91.97  Aligned_cols=98  Identities=17%  Similarity=0.216  Sum_probs=87.5

Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCC
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ  161 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  161 (248)
                      .++..++.+|+..|....++.+.-.|.+      ++.+|.+.+|+||.|+..|+.+++++|++...     ++++.+|.+
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D------~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~k-----v~~~~kDRw  572 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMD------LETKDYDDRTALHVAAAEGHVEVVKFLLNACK-----VDPDPKDRW  572 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhccc------ccccccccchhheeecccCceeHHHHHHHHHc-----CCCChhhcc
Confidence            4566789999999999999999888888      99999999999999999999999999999875     689999999


Q ss_pred             CCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCC
Q 037085          162 GQTALQLCNANSQDSVFKEIGWIIQRAVAQQSP  194 (248)
Q Consensus       162 g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~  194 (248)
                      |+|||+-|...    .+.+++++|.+.......
T Consensus       573 ~rtPlDdA~~F----~h~~v~k~L~~~~~~y~~  601 (622)
T KOG0506|consen  573 GRTPLDDAKHF----KHKEVVKLLEEAQYPYTL  601 (622)
T ss_pred             CCCcchHhHhc----CcHHHHHHHHHHhccccc
Confidence            99999999877    789999999987665444

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.95  E-value=5.1e-10  Score=97.48  Aligned_cols=89  Identities=24%  Similarity=0.349  Sum_probs=71.2

Q ss_pred             CchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCC
Q 037085            5 WPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNG   84 (248)
Q Consensus         5 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   84 (248)
                      +..+++++|..|+|+||+|+..+...+++.|+++|.++.-+-...|+||||.|+..|+.+++..||.+ +.....+|++|
T Consensus        41 c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~-g~SL~i~Dkeg  119 (1267)
T KOG0783|consen   41 CQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK-GRSLRIKDKEG  119 (1267)
T ss_pred             hhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhc-CCceEEecccC
Confidence            34567888888888888888888888888888888888544455788888888888888888888887 45677888888


Q ss_pred             CcHHHHHHHc
Q 037085           85 ETALHLAVKK   94 (248)
Q Consensus        85 ~t~lh~a~~~   94 (248)
                      .+||.+.++-
T Consensus       120 lsplq~~~r~  129 (1267)
T KOG0783|consen  120 LSPLQFLSRV  129 (1267)
T ss_pred             CCHHHHHhhc
Confidence            8888887663

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.94  E-value=8.5e-10  Score=96.13  Aligned_cols=89  Identities=24%  Similarity=0.337  Sum_probs=53.4

Q ss_pred             HhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhcccccccccccc-CCCCcHhHHHHhCCcHHHHHHHHhhcccc
Q 037085           71 SICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD-KEGNTVLHLATLNKLKQIVELLIRENSNR  149 (248)
Q Consensus        71 ~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~  149 (248)
                      +.|....+++|..|+|+||+++..+..+++++|+++|.+      +..+| ..|.||||-|...|+.+++-.|+.+|+  
T Consensus        39 k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid------v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~--  110 (1267)
T KOG0783|consen   39 KSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID------VFVQDEESGYTALHRAIYYGNIDCASLLLSKGR--  110 (1267)
T ss_pred             HhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce------eeeccccccchHhhHhhhhchHHHHHHHHhcCC--
Confidence            344444556666666666666666666666666666655      55555 346666666666666666666666665  


Q ss_pred             cccccccccCCCCCCHHHHHHH
Q 037085          150 RIMIRINTVNKQGQTALQLCNA  171 (248)
Q Consensus       150 ~~~~~~~~~~~~g~tpl~~a~~  171 (248)
                          .+...|++|..||+..++
T Consensus       111 ----SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  111 ----SLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             ----ceEEecccCCCHHHHHhh
Confidence                455566666666665543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.93  E-value=5.7e-09  Score=87.61  Aligned_cols=119  Identities=24%  Similarity=0.224  Sum_probs=99.1

Q ss_pred             HHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCch-hhhhhccCCCcHHHHHHHcCChH
Q 037085           20 MHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE-SLEKLTSNGETALHLAVKKSRSD   98 (248)
Q Consensus        20 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~-~~~~~~~~g~t~lh~a~~~~~~~   98 (248)
                      +..|+..+++--++.....|.++ ..++.+-.+.||+|+..|+-++++++|++++. ..+..|..|.|+||-|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            34455555544444455556666 56788888999999999999999999999764 46778899999999999999999


Q ss_pred             HHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhh
Q 037085           99 AFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRE  145 (248)
Q Consensus        99 ~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  145 (248)
                      ++++|++.|+.      +...|..|.||-.-|-..|..+++-+|-.+
T Consensus       949 vc~~lvdagas------l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGAS------LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchh------heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999998      888999999999999999999999888654

>PF13962 PGG: Domain of unknown function

Probab=98.91  E-value=1.1e-09  Score=75.59  Aligned_cols=37  Identities=32%  Similarity=0.612  Sum_probs=34.3

Q ss_pred             cCCchhhhhhHHHHHHHHHHHHHHhhcCCCCccCCCC
Q 037085          209 TRWPIETRNVLLMVVVTIAAAFFTVTCNLPDSFLKED  245 (248)
Q Consensus       209 ~~~~~~~~~~~~~~~~li~~~~f~~~~~~pgg~~~~~  245 (248)
                      ++|+++.++.+++||+||+|++|++++++||||.+++
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~   37 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDD   37 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Confidence            3689999999999999999999999999999997764

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.91  E-value=5.6e-09  Score=86.18  Aligned_cols=88  Identities=18%  Similarity=0.183  Sum_probs=75.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhcccccccccccc-CCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCH
Q 037085           87 ALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD-KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTA  165 (248)
Q Consensus        87 ~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tp  165 (248)
                      -||..++.++.+..-.|+..|++      .|..+ ..|.||||+|+..|+..=+++|+-+|+      |+++.|.+|.||
T Consensus       136 QLhasvRt~nlet~LRll~lGA~------~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGA------D~~a~d~~GmtP  203 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQ------ANFFHPEKGNTPLHVAAKAGQILQAELLAVYGA------DPGAQDSSGMTP  203 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccc------cCCCCcccCCchhHHHHhccchhhhhHHhhccC------CCCCCCCCCCcH
Confidence            48999999999999999999998      66655 689999999999999999999999998      899999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHhhh
Q 037085          166 LQLCNANSQDSVFKEIGWIIQRAVA  190 (248)
Q Consensus       166 l~~a~~~~~~~~~~~i~~~L~~~g~  190 (248)
                      +++|-..    ++.++.+.|.+...
T Consensus       204 ~~~AR~~----gH~~laeRl~e~~y  224 (669)
T KOG0818|consen  204 VDYARQG----GHHELAERLVEIQY  224 (669)
T ss_pred             HHHHHhc----CchHHHHHHHHHHH
Confidence            9999887    45555555554433

>PF13606 Ank_3: Ankyrin repeat

Probab=98.84  E-value=3.5e-09  Score=54.48  Aligned_cols=26  Identities=42%  Similarity=0.563  Sum_probs=24.2

Q ss_pred             CCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085          122 EGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus       122 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                      +|+||||+|++.|+.+++++|+++|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~ga   26 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGA   26 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            58999999999999999999999997

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.83  E-value=5.9e-09  Score=55.14  Aligned_cols=33  Identities=36%  Similarity=0.565  Sum_probs=29.4

Q ss_pred             CCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCC
Q 037085          122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK  160 (248)
Q Consensus       122 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~  160 (248)
                      +|+||||+|+..++.+++++|+++|+      +++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga------~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGA------DINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTS------CTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcC------CCCCCCC
Confidence            58999999999999999999999998      7777664

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.81  E-value=1.5e-08  Score=85.23  Aligned_cols=119  Identities=18%  Similarity=0.251  Sum_probs=96.6

Q ss_pred             HHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCC
Q 037085           55 HRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNK  134 (248)
Q Consensus        55 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~  134 (248)
                      ..|+..++.--++..-..++. .-.++.+-.+.||+|+..|+-+++++++.+|..    .++++.|..|+|+||.|+..+
T Consensus       871 l~av~~~D~~klqE~h~~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p~----elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS----ELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH----HHHHHHhhhhhHHHHHHHHhc
Confidence            344555554444444445443 556678889999999999999999999999765    558899999999999999999


Q ss_pred             cHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHh
Q 037085          135 LKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRA  188 (248)
Q Consensus       135 ~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~  188 (248)
                      +-.+..+|++.|+      .+...|..|.||-..|-..    +..++..+|-+.
T Consensus       946 ~r~vc~~lvdaga------sl~ktd~kg~tp~eraqqa----~d~dlaayle~r  989 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGA------SLRKTDSKGKTPQERAQQA----GDPDLAAYLESR  989 (1004)
T ss_pred             chHHHHHHHhcch------hheecccCCCChHHHHHhc----CCchHHHHHhhh
Confidence            9999999999998      5778999999999999776    677888888754

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.76  E-value=3.5e-08  Score=81.62  Aligned_cols=87  Identities=17%  Similarity=0.093  Sum_probs=77.4

Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChH
Q 037085           19 TMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSD   98 (248)
Q Consensus        19 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~   98 (248)
                      -||-.++.|+.+..-.||..|++.++.....|.||||.|++.|+..-+++|+-. +.++...|.+|.||+.+|-..||.+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY-GAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY-GADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhc-cCCCCCCCCCCCcHHHHHHhcCchH
Confidence            578899999999999999999999888888999999999999999999999987 5568889999999999999999988


Q ss_pred             HHHHHHHH
Q 037085           99 AFQALVDE  106 (248)
Q Consensus        99 ~~~~Ll~~  106 (248)
                      +.+.|++.
T Consensus       215 laeRl~e~  222 (669)
T KOG0818|consen  215 LAERLVEI  222 (669)
T ss_pred             HHHHHHHH
Confidence            87777654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.71  E-value=1.9e-08  Score=51.68  Aligned_cols=28  Identities=25%  Similarity=0.593  Sum_probs=16.7

Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHhcCcch
Q 037085           15 RGETTMHLLSTDGDARMVRIFGENNREL   42 (248)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~   42 (248)
                      +|+||||+||+.|+.+++++|+++++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            3566666666666666666666665544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.60  E-value=1.6e-07  Score=78.49  Aligned_cols=89  Identities=29%  Similarity=0.410  Sum_probs=71.8

Q ss_pred             cHHHHHHHhCCHHHHHH-HHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHH
Q 037085           52 IPLHRAALEGDSDVIRA-LVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLA  130 (248)
Q Consensus        52 t~L~~A~~~g~~~~~~~-Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A  130 (248)
                      -|+|+++.....+-+.. |.......++.+|..|.||||+|+.-|+...++.|+..+++      +..+|+.|++|||.|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad------v~~kN~~gWs~L~EA   95 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD------VSIKNNEGWSPLHEA   95 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC------ccccccccccHHHHH
Confidence            45888887766554444 33333456788889999999999999999999999999888      888999999999999


Q ss_pred             HhCCcHHHHHHHHhhc
Q 037085          131 TLNKLKQIVELLIREN  146 (248)
Q Consensus       131 ~~~~~~~~v~~Ll~~g  146 (248)
                      +..|+.+++..++.+.
T Consensus        96 v~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   96 VSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHcCCHHHHHHHHHHh
Confidence            9999998888888764

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.59  E-value=5.9e-08  Score=51.24  Aligned_cols=26  Identities=27%  Similarity=0.514  Sum_probs=13.7

Q ss_pred             CCcHHHHHHHcCChHHHHHHHHHHhc
Q 037085           84 GETALHLAVKKSRSDAFQALVDEAKS  109 (248)
Q Consensus        84 g~t~lh~a~~~~~~~~~~~Ll~~~~~  109 (248)
                      |.||||+|+..++.+++++|+++|++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            45555555555555555555555544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.58  E-value=1.1e-07  Score=79.49  Aligned_cols=112  Identities=17%  Similarity=0.126  Sum_probs=85.6

Q ss_pred             CHHHHHHhCCCHHHHHHHHh-cCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCC
Q 037085           18 TTMHLLSTDGDARMVRIFGE-NNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSR   96 (248)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~   96 (248)
                      -|+|+++.....+.....+. .-....+.+|..|.||||.|+..|+.+.++.|+..++ ++..++..|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~A-dv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGA-DVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCC-CccccccccccHHHHHHHcCC
Confidence            45999998877765555433 3334447889999999999999999999999999954 577889999999999999999


Q ss_pred             hHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhc
Q 037085           97 SDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN  146 (248)
Q Consensus        97 ~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g  146 (248)
                      ..++..++.+-..         +.       -.-...+.+.+++.|.+.+
T Consensus       101 ~q~i~~vlr~~~~---------q~-------~~~~~~~~p~ll~~l~~~~  134 (560)
T KOG0522|consen  101 EQIITEVLRHLKY---------QA-------WEKWERRLPRLLAKLSEMP  134 (560)
T ss_pred             HHHHHHHHHHhHH---------HH-------HHHHHhcchHHHHHHHhCc
Confidence            9999888876332         00       0112345677777787766

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.54  E-value=1.9e-07  Score=78.66  Aligned_cols=95  Identities=21%  Similarity=0.136  Sum_probs=75.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHH
Q 037085           88 LHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQ  167 (248)
Q Consensus        88 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~  167 (248)
                      |.-|+.......+-+|+.+|...  +.+-..-+.+|.|+||+|++.|+..+..+|+=+|+      |+.++|..|+|+|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~--e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~------dv~~rda~g~t~l~  699 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSRE--EVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGV------DVMARDAHGRTALF  699 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCch--hhhccccCCCCcchhhhhhhhcchhHHHHHHHhCc------cceecccCCchhhh
Confidence            34455556666777778776542  22233456678999999999999999999999887      89999999999999


Q ss_pred             HHHHcCCCchHHHHHHHHHHhhhhcCC
Q 037085          168 LCNANSQDSVFKEIGWIIQRAVAQQSP  194 (248)
Q Consensus       168 ~a~~~~~~~~~~~i~~~L~~~g~~~~~  194 (248)
                      +|-..    +..+++.+|+.+|.....
T Consensus       700 yar~a----~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  700 YARQA----GSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             hHhhc----ccHHHHHHHHHcCCCccc
Confidence            99877    789999999999987543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.54  E-value=2.3e-07  Score=78.18  Aligned_cols=89  Identities=24%  Similarity=0.225  Sum_probs=75.7

Q ss_pred             HHHHHHhCCHHHHHHHHHhCch---hhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHH
Q 037085           54 LHRAALEGDSDVIRALVSICPE---SLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLA  130 (248)
Q Consensus        54 L~~A~~~g~~~~~~~Ll~~~~~---~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A  130 (248)
                      |..|+...+...+-+||.++..   ..-..+.+|+|+||+|++.|+..+.++|+=+|++      +..+|..|+|+|.||
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d------v~~rda~g~t~l~ya  701 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD------VMARDAHGRTALFYA  701 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc------ceecccCCchhhhhH
Confidence            5567777788888888887532   1123456789999999999999999999999988      888999999999999


Q ss_pred             HhCCcHHHHHHHHhhccc
Q 037085          131 TLNKLKQIVELLIRENSN  148 (248)
Q Consensus       131 ~~~~~~~~v~~Ll~~g~~  148 (248)
                      -..|..+++..|+++|..
T Consensus       702 r~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  702 RQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hhcccHHHHHHHHHcCCC
Confidence            999999999999999973

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.47  E-value=1.1e-07  Score=85.36  Aligned_cols=132  Identities=21%  Similarity=0.091  Sum_probs=90.6

Q ss_pred             hhccCCCCHHHHHHhCCCHHHHHHHHhc-CcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHH
Q 037085           11 IKNQRGETTMHLLSTDGDARMVRIFGEN-NRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALH   89 (248)
Q Consensus        11 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh   89 (248)
                      ..+..|.+.+|+++..++..+++.+++- +... ...|.+|.-.+|. |..++.++.-+++...+..++.+|..|+||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            3455678888888888888888888775 3322 3456666666666 66677777777776666667778888888888


Q ss_pred             HHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHh
Q 037085           90 LAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (248)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (248)
                      +|+..|+..++..|+..|+....--.....+-.|.|+--.|...|+..+.-+|-+
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            8888888888888887776644222233444567777777777777666665544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.40  E-value=2.8e-07  Score=82.84  Aligned_cols=79  Identities=27%  Similarity=0.353  Sum_probs=75.1

Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCC
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ  161 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  161 (248)
                      ..|.|+||.|+..+...++++|++.|++      +|.+|..|+||+|.+...|+...+..|+++|+      +.++.+..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~------vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a------~~~a~~~~  721 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD------VNALDSKGRTPLHHATASGHTSIACLLLKRGA------DPNAFDPD  721 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc------chhhhccCCCcchhhhhhcccchhhhhccccc------cccccCcc
Confidence            4679999999999999999999999998      99999999999999999999999999999998      88999999


Q ss_pred             CCCHHHHHHHc
Q 037085          162 GQTALQLCNAN  172 (248)
Q Consensus       162 g~tpl~~a~~~  172 (248)
                      |.+|+++|...
T Consensus       722 ~~~~l~~a~~~  732 (785)
T KOG0521|consen  722 GKLPLDIAMEA  732 (785)
T ss_pred             CcchhhHHhhh
Confidence            99999999876

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.38  E-value=1.2e-06  Score=77.31  Aligned_cols=131  Identities=17%  Similarity=0.039  Sum_probs=85.9

Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCch---hhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhH
Q 037085           52 IPLHRAALEGDSDVIRALVSICPE---SLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLH  128 (248)
Q Consensus        52 t~L~~A~~~g~~~~~~~Ll~~~~~---~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh  128 (248)
                      --+-.|+..|+.-.++..++....   .+|..|.-|+++|++|+.+.+.++.++|+++...        .     ..+|-
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~--------~-----gdALL   93 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE--------E-----GDALL   93 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc--------c-----chHHH
Confidence            344566777777777776665332   3456666777777777777777777777665321        1     34667


Q ss_pred             HHHhCCcHHHHHHHHhhcccccc---cccc-cccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCC
Q 037085          129 LATLNKLKQIVELLIRENSNRRI---MIRI-NTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDA  199 (248)
Q Consensus       129 ~A~~~~~~~~v~~Ll~~g~~~~~---~~~~-~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~  199 (248)
                      +|+..|..++|+.++.+.....+   ..|. ...-..+.||+.+|+..    .+.||+++|++.|+.+..+....
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~----NnyEil~~Ll~kg~~i~~PH~~~  164 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHL----NNFEILQCLLTRGHCIPIPHDIR  164 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHh----cchHHHHHHHHcCCCCCCCcccc
Confidence            77777777777777765431100   0011 12234578999999988    78999999999999998766543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.33  E-value=1.4e-06  Score=76.81  Aligned_cols=127  Identities=18%  Similarity=0.057  Sum_probs=100.1

Q ss_pred             cCCCCHHHHHHhCCCHHHHHHHHhcCcc---hhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 037085           14 QRGETTMHLLSTDGDARMVRIFGENNRE---LCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHL   90 (248)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~   90 (248)
                      ..+.-.+..|+..|+...|+..++....   ..+.+|.-|.++|+.|+.+.+.+++++|++. +...       ..+|.+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~-~~~~-------gdALL~   94 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT-SSEE-------GDALLL   94 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC-cccc-------chHHHH
Confidence            3455567889999999999999987654   3378899999999999999999999999998 3211       568999


Q ss_pred             HHHcCChHHHHHHHHHHhcccccc----ccccccCCCCcHhHHHHhCCcHHHHHHHHhhccc
Q 037085           91 AVKKSRSDAFQALVDEAKSHRKEH----LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN  148 (248)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~----~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  148 (248)
                      |+..+..++++.++.+-.......    .-...-.-+-||+.+||..++.+++++|+.+|+.
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence            999999999999998733211000    0012234567999999999999999999999985

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.30  E-value=6.7e-07  Score=80.45  Aligned_cols=131  Identities=20%  Similarity=0.193  Sum_probs=97.9

Q ss_pred             hcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHH-HHhccccccccccccCCCC
Q 037085           46 VDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-EAKSHRKEHLFTWKDKEGN  124 (248)
Q Consensus        46 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~g~  124 (248)
                      ....|.+.+|+++..+..-+++.+++--.......|..|...+|+++ .++.+.+-+++. .|..      ++.+|..|+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~a------i~i~D~~G~  642 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVA------IDIRDRNGW  642 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccc------cccccCCCC
Confidence            45578999999999999999999998512223456788888899854 455555544443 3333      899999999


Q ss_pred             cHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHH
Q 037085          125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR  187 (248)
Q Consensus       125 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~  187 (248)
                      ||||+|+..|+..++..|++.|+++--..|+......|.|+-.+|..+    ++..+.-+|.+
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~----g~~gia~~lse  701 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARAN----GHKGIAGYLSE  701 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcc----cccchHHHHhh
Confidence            999999999999999999998886544446666667899999999766    45555555444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.28  E-value=3.3e-06  Score=61.79  Aligned_cols=73  Identities=15%  Similarity=0.110  Sum_probs=62.6

Q ss_pred             ccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCC
Q 037085          115 LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSP  194 (248)
Q Consensus       115 ~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~  194 (248)
                      .+|.+|..|+|+|+.|+..|+.+.+.+|+++|+     .++-..|..|.+++.+|-+.    ++.+++..|.+.-.+...
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~-----a~vgv~d~ssldaaqlaek~----g~~~fvh~lfe~~~ets~   74 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGV-----AFVGVTDESSLDAAQLAEKG----GAQAFVHSLFENDRETSH   74 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCc-----ccccccccccchHHHHHHhc----ChHHHHHHHHHHhccCCC
Confidence            389999999999999999999999999999995     38899999999999999877    788999999887544443


Q ss_pred             CC
Q 037085          195 QL  196 (248)
Q Consensus       195 ~~  196 (248)
                      .+
T Consensus        75 p~   76 (223)
T KOG2384|consen   75 PM   76 (223)
T ss_pred             cc
Confidence            33

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.16  E-value=5e-06  Score=67.05  Aligned_cols=71  Identities=24%  Similarity=0.205  Sum_probs=58.6

Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHH
Q 037085           17 ETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALH   89 (248)
Q Consensus        17 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh   89 (248)
                      .--|+.||+.|+.+.|+.|++.|..+ +.+|....+||.+|+-+||.+++++|+++|+. ...-.-+|.-++.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAi-C~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAI-CSRDTFDGDRCHY  107 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCc-ccccccCcchhhh
Confidence            34579999999999999999999888 89999999999999999999999999999654 3332334554443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.15  E-value=3e-06  Score=76.39  Aligned_cols=88  Identities=26%  Similarity=0.229  Sum_probs=78.5

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHh
Q 037085           48 NSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVL  127 (248)
Q Consensus        48 ~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~L  127 (248)
                      ..|.|+||.|+..|..-+.++|++.+ ++++..|..|++|+|.+...|+...+..++++|++      .+..+.+|.+||
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~g-a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~------~~a~~~~~~~~l  726 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNG-ADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD------PNAFDPDGKLPL  726 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcC-CcchhhhccCCCcchhhhhhcccchhhhhcccccc------ccccCccCcchh
Confidence            45789999999999999999999985 55999999999999999999999999999999998      888999999999


Q ss_pred             HHHHhCCcHHHHHHH
Q 037085          128 HLATLNKLKQIVELL  142 (248)
Q Consensus       128 h~A~~~~~~~~v~~L  142 (248)
                      ++|....+.+++-++
T Consensus       727 ~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  727 DIAMEAANADIVLLL  741 (785)
T ss_pred             hHHhhhccccHHHHH
Confidence            999887666655444

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.10  E-value=1.3e-05  Score=64.73  Aligned_cols=82  Identities=23%  Similarity=0.337  Sum_probs=55.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccC-CCCcHhHHHH
Q 037085           53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDK-EGNTVLHLAT  131 (248)
Q Consensus        53 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A~  131 (248)
                      -|..||+.|..+.++.|++. +..+|.+|+...+||.+|+..||.+++++|+++|+       +..+|. +|.-+ |+++
T Consensus        39 elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA-------iC~rdtf~G~RC-~Yga  109 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA-------ICSRDTFDGDRC-HYGA  109 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC-------cccccccCcchh-hhhh
Confidence            46778888888888888885 56678888888888888888888888888888876       444553 34433 4443


Q ss_pred             hCCcHHHHHHHHhh
Q 037085          132 LNKLKQIVELLIRE  145 (248)
Q Consensus       132 ~~~~~~~v~~Ll~~  145 (248)
                      .  +-.|-+.|+.+
T Consensus       110 L--nd~IR~mllsy  121 (516)
T KOG0511|consen  110 L--NDRIRRMLLSY  121 (516)
T ss_pred             h--hHHHHHHHHHH
Confidence            3  33444556554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.01  E-value=1.4e-05  Score=58.66  Aligned_cols=64  Identities=14%  Similarity=0.124  Sum_probs=32.5

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHh
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSI   72 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~   72 (248)
                      ++..|..|+|+|++|+..|+.+.+.+|++++..-....|..+.+++.+|-+.|..++++.|.+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            3444555555555555555555555555555222244455555555555555555555555443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.63  E-value=0.00011  Score=61.63  Aligned_cols=78  Identities=22%  Similarity=0.230  Sum_probs=59.5

Q ss_pred             ChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCC
Q 037085           96 RSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQD  175 (248)
Q Consensus        96 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~  175 (248)
                      -+..+++|.+++.+.+........+..-.|+||+|+..|.-++|.+||+.|+      |+..+|..|+||++++.     
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~------Dp~~kd~~Grtpy~ls~-----  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGC------DPSTKDGAGRTPYSLSA-----  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcC------CchhcccCCCCcccccc-----
Confidence            3667788887766643333333445557799999999999999999999997      88999999999999884     


Q ss_pred             chHHHHHHHHH
Q 037085          176 SVFKEIGWIIQ  186 (248)
Q Consensus       176 ~~~~~i~~~L~  186 (248)
                        +.+|-..++
T Consensus       472 --nkdVk~~F~  480 (591)
T KOG2505|consen  472 --NKDVKSIFI  480 (591)
T ss_pred             --cHHHHHHHH
Confidence              345555554

>smart00248 ANK ankyrin repeats

Probab=96.96  E-value=0.0016  Score=31.91  Aligned_cols=25  Identities=24%  Similarity=0.585  Sum_probs=12.7

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCc
Q 037085           16 GETTMHLLSTDGDARMVRIFGENNR   40 (248)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~   40 (248)
                      |.|+||+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4455555555555555555554443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.86  E-value=0.0018  Score=31.65  Aligned_cols=26  Identities=38%  Similarity=0.574  Sum_probs=20.9

Q ss_pred             CCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085          122 EGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus       122 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                      .|.||+|+|+..++.++++.|++.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            36788888888888888888888765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.65  E-value=0.02  Score=43.63  Aligned_cols=50  Identities=16%  Similarity=0.130  Sum_probs=39.9

Q ss_pred             cHHHHHHHHhhcccccccccccc---cCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcC
Q 037085          135 LKQIVELLIRENSNRRIMIRINT---VNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQS  193 (248)
Q Consensus       135 ~~~~v~~Ll~~g~~~~~~~~~~~---~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~  193 (248)
                      +..+.++++.+|-     +++|.   +-+.|.|.|+-|+++    +..+++.+|+++||...
T Consensus       229 ~~kvL~~Fi~~Gl-----v~vN~~F~~~NSGdtMLDNA~Ky----~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  229 SYKVLEYFINRGL-----VDVNKKFQKVNSGDTMLDNAMKY----KNSEMIAFLLKYGAISG  281 (284)
T ss_pred             cHHHHHHHHhccc-----cccchhhhccCCcchHHHhHHhc----CcHHHHHHHHHcCcccc
Confidence            6678888898886     56654   356789999999987    78899999999998543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.18  E-value=0.0062  Score=51.42  Aligned_cols=63  Identities=17%  Similarity=0.127  Sum_probs=46.4

Q ss_pred             HHHHHHHHhcCcchhh-----hhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 037085           29 ARMVRIFGENNRELCL-----EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAV   92 (248)
Q Consensus        29 ~~~v~~Ll~~~~~~~~-----~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~   92 (248)
                      ...+.+|.+++.+.+.     ..+..-.|+||+|+.+|..+++.+||+.+ +++-.+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc
Confidence            3456666666554421     12334668899999999999999999985 778888899999988876

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.62  E-value=0.39  Score=35.66  Aligned_cols=137  Identities=13%  Similarity=0.033  Sum_probs=90.4

Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCC
Q 037085           17 ETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSR   96 (248)
Q Consensus        17 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~   96 (248)
                      +-.|..|++++...+++..-+....-    -...++-+-.||+..+.|+|+.+-+.-..      .+-.+-+.+|....+
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccc
Confidence            34567788999888888775543221    12346778899999999999999554221      233456778888888


Q ss_pred             hHHHH----HHHHHHhccccccccccccCC----CCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHH
Q 037085           97 SDAFQ----ALVDEAKSHRKEHLFTWKDKE----GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL  168 (248)
Q Consensus        97 ~~~~~----~Ll~~~~~~~~~~~~~~~~~~----g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~  168 (248)
                      .++..    +++.+...        ..+.+    -..-|.+|+..|-...+.-.+++|.+      ++      .+.|..
T Consensus       117 lsLyslGY~l~~~~~~~--------~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~------~~------~~vls~  176 (192)
T PF03158_consen  117 LSLYSLGYKLLFNRMMS--------EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGN------VD------IIVLSQ  176 (192)
T ss_pred             hhHHHHHHHHHHhhccc--------ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCc------cc------HHHHHH
Confidence            77632    22222111        10000    11246899999999999999999872      22      288999


Q ss_pred             HHHcCCCchHHHHHHHHHH
Q 037085          169 CNANSQDSVFKEIGWIIQR  187 (248)
Q Consensus       169 a~~~~~~~~~~~i~~~L~~  187 (248)
                      |+..    .+..|+.++++
T Consensus       177 Av~y----nhRkIL~yfi~  191 (192)
T PF03158_consen  177 AVKY----NHRKILDYFIR  191 (192)
T ss_pred             HHHh----hHHHHHHHhhc
Confidence            9887    78888888764

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.62  E-value=0.14  Score=37.84  Aligned_cols=112  Identities=16%  Similarity=0.056  Sum_probs=75.1

Q ss_pred             cCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHH----HHHhCchhhhhhc--cCCCcH
Q 037085           14 QRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRA----LVSICPESLEKLT--SNGETA   87 (248)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~----Ll~~~~~~~~~~~--~~g~t~   87 (248)
                      ...++.+-.||+..+.++|+.+-+.-.-      .+-.+-+-+|....+.++...    ++.. .......|  .--..-
T Consensus        74 ~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kDlsLyslGY~l~~~~-~~~~~~~d~~~ll~~h  146 (192)
T PF03158_consen   74 YLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKDLSLYSLGYKLLFNR-MMSEHNEDPTSLLTQH  146 (192)
T ss_pred             hHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccchhHHHHHHHHHHhh-cccccccCHHHHHHHH
Confidence            4577888999999999999999443221      223466778888888776221    1221 11000000  001134


Q ss_pred             HHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHh
Q 037085           88 LHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (248)
Q Consensus        88 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (248)
                      |..|+..|-..++...+++|.+      ++      .++|..|+...+-.++.+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~------~~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGN------VD------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCc------cc------HHHHHHHHHhhHHHHHHHhhc
Confidence            6789999999999888898876      22      279999999999999988764

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.42  E-value=0.095  Score=33.14  Aligned_cols=46  Identities=15%  Similarity=0.135  Sum_probs=25.1

Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHh
Q 037085           19 TMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSI   72 (248)
Q Consensus        19 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~   72 (248)
                      .+..|+..|+.++++.+++.+...        ..++..|+...+-+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            455566666666666665433111        2355666666666666666555

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.33  E-value=0.23  Score=31.32  Aligned_cols=48  Identities=17%  Similarity=0.275  Sum_probs=39.3

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHH
Q 037085           51 MIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE  106 (248)
Q Consensus        51 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~  106 (248)
                      ...+..|+.+|+.|+++.+++.+..  .      ...+..|+...+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~--~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP--D------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc--H------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3568899999999999999976421  1      4578999999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.61  E-value=0.81  Score=35.22  Aligned_cols=120  Identities=9%  Similarity=0.076  Sum_probs=83.1

Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCch----hhhhhccCCCcHHHHHH
Q 037085           17 ETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE----SLEKLTSNGETALHLAV   92 (248)
Q Consensus        17 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~----~~~~~~~~g~t~lh~a~   92 (248)
                      .-.|--|+..-+.+-+.-++....+.        .+++.+++..+..+++.+|+.....    ....  ..+.--+.++.
T Consensus       154 ~isledAV~AsN~~~i~~~VtdKkdA--------~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~L  223 (284)
T PF06128_consen  154 DISLEDAVKASNYEEISNLVTDKKDA--------HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLL  223 (284)
T ss_pred             cccHHHHHhhcCHHHHHHHhcchHHH--------HHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHH
Confidence            34566788888888877777665544        4788999999999999999986431    1111  11222444443


Q ss_pred             H--cCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccc
Q 037085           93 K--KSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN  148 (248)
Q Consensus        93 ~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  148 (248)
                      .  ..+..+.++++.+|--....  .=.+-+.|.|-|.-|...++.+++.+|+++|+.
T Consensus       224 S~h~a~~kvL~~Fi~~Glv~vN~--~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  224 SEHSASYKVLEYFINRGLVDVNK--KFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hhcCCcHHHHHHHHhccccccch--hhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            3  34577888998886432100  123568899999999999999999999999985

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		1e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-07
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		6e-06
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		9e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-04
1uoh_A	226	Human Gankyrin Length = 226		2e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		3e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		3e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-04
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 47  DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
           D+    PLH AA EG  ++++ L+S   +   K  S+G T LH A K+   +  + L+ +
Sbjct: 34  DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
                       KD +G T LH A     K+IV+LLI + ++      +NT +  G+T L
Sbjct: 93  GAD------VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD------VNTSDSDGRTPL 140
Query: 167 QLCNANSQDSVF----KEIGWI 184
            L   +  + +     K+ GW+
Sbjct: 141 DLAREHGNEEIVKLLEKQGGWL 162

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 47  DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
           D+    PLH AA  G  +V++ L+S   +   K  S+G+T LHLA +    +  + L+ +
Sbjct: 34  DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
                       KD +G T LHLA  N  K++V+LL+ + ++       NT +  G+T L
Sbjct: 93  GAD------PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD------PNTSDSDGRTPL 140
Query: 167 QLCNANSQDSVF----KEIGWI 184
            L   +  + V     K+ GW+
Sbjct: 141 DLAREHGNEEVVKLLEKQGGWL 162

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 47  DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
           D+    PLH AA  G  +V++ L+S   +   K  S+G T LH A +    +  + L+ +
Sbjct: 34  DSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
                       KD +G T LH A  N  K++V+LLI + ++      +NT +  G+T L
Sbjct: 93  GAD------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD------VNTSDSDGRTPL 140
Query: 167 QLCNANSQDSVF----KEIGWI 184
            L   +  + V     K+ GW+
Sbjct: 141 DLAREHGNEEVVKLLEKQGGWL 162

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 78/148 (52%), Gaps = 14/148 (9%)
Query: 8   LASIKNQRGETTMHLLSTDGD----ARMVRIFGENNRELCLEVDNSL-MIPLHRAALEGD 62
           +A+  ++ G+T +H+    G+     R+V +F +  REL  ++ N+L   PLH A +   
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPLHLAVITTL 58
Query: 63  SDVIRALVSI--CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
             V+R LV+    P +L++   +G+TA HLA +       +AL+D A     +     ++
Sbjct: 59  PSVVRLLVTAGASPMALDR---HGQTAAHLACEHRSPTCLRALLDSAAPGTLD--LEARN 113
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSN 148
            +G T LH+A   + ++ V+LL+   ++
Sbjct: 114 YDGLTALHVAVNTECQETVQLLLERGAD 141

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 47  DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
           D+    PLH AA  G  ++++ L+S   +   K  S+G T LH A +    +  + L+ +
Sbjct: 34  DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
                       KD +G T LH A  N  K+IV+LL+ + ++       NT +  G+T L
Sbjct: 93  GAD------PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD------PNTSDSDGRTPL 140
Query: 167 QLCNANSQDSVF----KEIGWI 184
            L   +  + +     K+ GW+
Sbjct: 141 DLAREHGNEEIVKLLEKQGGWL 162

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
           PLH AA  G  +V++ L+    +   K   NG T LHLA +    +  + L++       
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
                 KDK G T LHLA  N   ++V+LL+   ++      +N  +K G+T L L   N
Sbjct: 61  ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARN 111
Query: 173 SQDSVFK 179
               V K
Sbjct: 112 GHLEVVK 118

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 18/157 (11%)
Query: 32  VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
           VRI   N  ++  + D     PLH AA EG  +++  L+    +   K   +G T LHLA
Sbjct: 18  VRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLA 75
Query: 92  VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
            ++   +  + L+              KDK+G T LHLA      +IVE+L++  ++   
Sbjct: 76  AREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--- 126
Query: 152 MIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRA 188
              +N  +K G+T   L   N      ++I  ++Q+A
Sbjct: 127 ---VNAQDKFGKTPFDLAIDNGN----EDIAEVLQKA 156

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 32  VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
           VRI   N  ++  + D     PLH AA EG  +++  L+    +   K   +G T LHLA
Sbjct: 30  VRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLA 87
Query: 92  VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
            ++   +  + L+              KDK+G T LHLA      +IVE+L++  ++   
Sbjct: 88  AREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSV 177
              +N  +K G+TA  +   N  + +
Sbjct: 139 ---VNAQDKFGKTAFDISIDNGNEDL 161

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 18/157 (11%)
Query: 32  VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
           VRI   N  ++  + D     PLH AA EG  +++  L+    +   K   +G T LHLA
Sbjct: 18  VRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLA 75
Query: 92  VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
            ++   +  + L+              KDK+G T LHLA      +IVE+L++  ++   
Sbjct: 76  AREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--- 126
Query: 152 MIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRA 188
              +N  +K G+T   L      +    +I  ++Q+A
Sbjct: 127 ---VNAQDKFGKTPFDLAIREGHE----DIAEVLQKA 156

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 83  NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
           NG T LHLA +    +  + L++             KDK G T LHLA  N   ++V+LL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 143 IRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFK 179
           +   ++      +N  +K G+T L L   N    V K
Sbjct: 55  LEAGAD------VNAKDKNGRTPLHLAARNGHLEVVK 85

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 32  VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
           VRI   N  ++   VDN+ + PLH AA+ G  +++  L+    + ++     G T LHLA
Sbjct: 30  VRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLA 87
Query: 92  VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
                 +  + L+   K     + F   D  G+T LHLA      +IVE+L++  ++   
Sbjct: 88  AMTGHLEIVEVLL---KYGADVNAF---DMTGSTPLHLAADEGHLEIVEVLLKYGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSVFK 179
              +N  +K G+TA  +   N  + + K
Sbjct: 139 ---VNAQDKFGKTAFDISIDNGNEDLAK 163

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
           PLH AA  G  +++  L+    + +    + G T LHLA      +  + L+        
Sbjct: 50  PLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD--- 105
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
                 KD EG T LHLA  +   +IVE+L++  ++      +N  +K G+TA  +   N
Sbjct: 106 ---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD------VNAQDKFGKTAFDISIDN 156
Query: 173 SQDSV 177
             + +
Sbjct: 157 GNEDL 161

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 49/212 (23%)
Query: 8   LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEV---DNSLMIPLHRAALEGDSD 64
           LA+  +Q   T +H   + G   +V        +L + V   D++   PLH AA  G  +
Sbjct: 32  LATRTDQDSRTALHWACSAGHTEIVEFL----LQLGVPVNDKDDAGWSPLHIAASAGRDE 87
Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKE------ 113
           +++AL+    + +  +  NG T LH A  K+R +    L++     +AK H +       
Sbjct: 88  IVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 146
Query: 114 ---------HLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINT 157
                    H+  +       +D EGNT LHLA   +  +  +LL+ + ++      I  
Sbjct: 147 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS------IYI 200
Query: 158 VNKQGQTALQLCNANSQDSVFKEIGWIIQRAV 189
            NK+ +T LQ+            +G I++R V
Sbjct: 201 ENKEEKTPLQVAKGG--------LGLILKRMV 224

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 49/212 (23%)
Query: 8   LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEV---DNSLMIPLHRAALEGDSD 64
           LA+  +Q   T +H   + G   +V        +L + V   D++   PLH AA  G  +
Sbjct: 33  LATRTDQDSRTALHWACSAGHTEIVEFL----LQLGVPVNDKDDAGWSPLHIAASAGRDE 88
Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKE------ 113
           +++AL+    + +  +  NG T LH A  K+R +    L++     +AK H +       
Sbjct: 89  IVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 147
Query: 114 ---------HLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINT 157
                    H+  +       +D EGNT LHLA   +  +  +LL+ + ++      I  
Sbjct: 148 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS------IYI 201
Query: 158 VNKQGQTALQLCNANSQDSVFKEIGWIIQRAV 189
            NK+ +T LQ+            +G I++R V
Sbjct: 202 ENKEEKTPLQVAKGG--------LGLILKRMV 225

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 6   PQLASIKNQRGETTMHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGD 62
           P L   K+Q G   +H  S    A  +  F      N  L    D+S   P H A   G+
Sbjct: 26  PSLLLQKDQDGRIPLHW-SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN 84
Query: 63  SDVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
            +V+++L    + P+ L K+T+ G T LHLAV K   +  Q L++   S R       KD
Sbjct: 85  LEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KD 137
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           K     LH A      +++ELL     +      +N  +KQG T L
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 6   PQLASIKNQRGETTMHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGD 62
           P L   K+Q G   +H  S    A  +  F      N  L    D+S   P H A   G+
Sbjct: 26  PSLLLQKDQDGRIPLHW-SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN 84
Query: 63  SDVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
            +V+++L    + P+ L K+T+ G T LHLAV K   +  Q L++   S R       KD
Sbjct: 85  LEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KD 137
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           K     LH A      +++ELL     +      +N  +KQG T L
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 6   PQLASIKNQRGETTMHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGD 62
           P L   K+Q G   +H  S    A  +  F      N  L    D+S   P H A   G+
Sbjct: 26  PSLLLQKDQDGRIPLHW-SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN 84
Query: 63  SDVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
            +V+++L    + P+ L K+T+ G T LHLAV K   +  Q L++   S R       KD
Sbjct: 85  LEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KD 137
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           K     LH A      +++ELL     +      +N  +KQG T L
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
           PLH AA  G ++ ++ L+S   + +   + +G T LHLA K   ++  + L+ +      
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD--- 67
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
                 + K+GNT  HLA  N   +IV+LL
Sbjct: 68  ---VNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 22/158 (13%)
Query: 32  VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE--SLEKLTSNGETALH 89
           VRI   N  ++  E D+S   PLH AA++G  +++  L+    +  + +K+   G+T LH
Sbjct: 30  VRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM---GDTPLH 85
Query: 90  LAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNR 149
           LA      +  + L+               D  G T LHLA      +IVE+L++  ++ 
Sbjct: 86  LAALYGHLEIVEVLLKNGAD------VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD- 138
Query: 150 RIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR 187
                +N  +K G+TA  +    S D+  +++  I+Q+
Sbjct: 139 -----VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 167

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 32  VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
           VRI   N  ++  E D     PLH AA  G  +++  L+    + +  L  +G T LHLA
Sbjct: 30  VRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLA 87
Query: 92  VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
            K+   +  + L+               D  G+T LHLA      +IVE+L++  ++   
Sbjct: 88  AKRGHLEIVEVLLKYGAD------VNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSV 177
              +N  +K G+TA  +   N  + +
Sbjct: 139 ---VNAQDKFGKTAFDISIDNGNEDL 161

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 18/156 (11%)
Query: 32  VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
           VRI   N  ++    D S + PLH AA  G  +++  L+    + +  +   G T LHLA
Sbjct: 30  VRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLA 87
Query: 92  VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
                 +  + L+          + TW    G+T LHLA +    +IVE+L++  ++   
Sbjct: 88  ALIGHLEIVEVLLKHGADVNA--VDTW----GDTPLHLAAIMGHLEIVEVLLKHGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR 187
              +N  +K G+TA  +    S D+  +++  I+Q+
Sbjct: 139 ---VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 167

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 30/165 (18%)
Query: 23  LSTDGDARMVRIFGENNRELCLEV--------------DNSLMIPLHRAALEGDSDVIRA 68
           L+ DGD+ +        + L +EV              +N    PLH A +    ++  A
Sbjct: 1   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 69  LVSI-CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVL 127
           L+   C   L      G T LHLA ++    +   L     +     +    +  G+T L
Sbjct: 61  LLGAGCDPELRDF--RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 118
Query: 128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ----GQTALQL 168
           HLA+++    IVELL+   ++         VN Q    G+TAL L
Sbjct: 119 HLASIHGYLGIVELLVSLGAD---------VNAQEPCNGRTALHL 154

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 18/156 (11%)
Query: 32  VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
           VRI   N  ++    D S + PLH AA  G  +++  L+    + +  +   G T LHLA
Sbjct: 30  VRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLA 87
Query: 92  VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
                 +  + L+          + TW    G+T LHLA +    +IVE+L++  ++   
Sbjct: 88  ALIGHLEIVEVLLKHGADVNA--VDTW----GDTPLHLAAIMGHLEIVEVLLKHGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR 187
              +N  +K G+TA  +    S D+  +++  I+Q+
Sbjct: 139 ---VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 167

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 32  VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
           VRI   N  ++    DN L  PLH AA  G  +++  L+    + +    S G T LHLA
Sbjct: 22  VRILMANGADVNATDDNGLT-PLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLA 79
Query: 92  VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
                 +  + L+               D+ G T LHLA L+   +IVE+L++  ++   
Sbjct: 80  AYDGHLEIVEVLLKHGAD------VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD--- 130
Query: 152 MIRINTVNKQGQTALQLC 169
              +N  +  G TA  + 
Sbjct: 131 ---VNAQDALGLTAFDIS 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-13
2etb_A	256	Transient receptor potential cation channel subfam	1e-15
2etb_A	256	Transient receptor potential cation channel subfam	2e-11
2etb_A	256	Transient receptor potential cation channel subfam	5e-11
2etb_A	256	Transient receptor potential cation channel subfam	9e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-11
2rfa_A	232	Transient receptor potential cation channel subfa	2e-15
2rfa_A	232	Transient receptor potential cation channel subfa	3e-13
2rfa_A	232	Transient receptor potential cation channel subfa	7e-13
2rfa_A	232	Transient receptor potential cation channel subfa	1e-11
2rfa_A	232	Transient receptor potential cation channel subfa	2e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-09
2pnn_A	273	Transient receptor potential cation channel subfa	8e-13
2pnn_A	273	Transient receptor potential cation channel subfa	3e-11
2pnn_A	273	Transient receptor potential cation channel subfa	5e-11
2pnn_A	273	Transient receptor potential cation channel subfa	2e-07
2pnn_A	273	Transient receptor potential cation channel subfa	7e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 77.1 bits (191), Expect = 1e-17
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 24/126 (19%)

Query: 47  DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQAL--- 103
               M  +     EG++  +R  +      L +   +G + LH A ++ RS   + L   
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 104 ---VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
              ++              ++  +T LHLA  +  + IV+ L++  ++      IN VN+
Sbjct: 62  GARINV------------MNRGDDTPLHLAASHGHRDIVQKLLQYKAD------INAVNE 103

Query: 161 QGQTAL 166
            G   L
Sbjct: 104 HGNVPL 109

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 72.9 bits (180), Expect = 3e-16
 Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 39/170 (22%)

Query: 16  GETTMHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVS- 71
               +     +G+A  VR++    EN+     + D+    PLH A  EG S V+  L+  
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLN---QGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 72  ---ICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKE 122
              I       +    +T LHLA      D  Q L      ++              ++ 
Sbjct: 62  GARI-----NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA------------VNEH 104

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
           GN  LH A      Q+ E L+   +       ++  NK G+  +    A 
Sbjct: 105 GNVPLHYACFWGQDQVAEDLVANGAL------VSICNKYGEMPVDKAKAP 148

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 17/104 (16%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAF 100
            ++     PLH AA  G  D+++ L+     I       +  +G   LH A    +    
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-----NAVNEHGNVPLHYACFWGQDQVA 121

Query: 101 QALVDE-AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
           + LV   A            +K G   +  A     + + E   
Sbjct: 122 EDLVANGALVSIC-------NKYGEMPVDKAKAPLRELLRERAE 158

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 18/158 (11%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
                 +T     ++ G   ++       +        S+  PLH AA  G+   +R  +
Sbjct: 40  YITDMSDTNWWKGTSKGRTGLIPSNYVAEQ------AESIDNPLHEAAKRGNLSWLRECL 93

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLA 130
                 +  L   G TAL+ A      D  + L  +      +     ++K G+T LH A
Sbjct: 94  DNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-----QNKLGDTALHAA 147

Query: 131 TLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
                  IV+LL+ + +        +  N + + A  +
Sbjct: 148 AWKGYADIVQLLLAKGAR------TDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 73.4 bits (181), Expect = 5e-16
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 32/167 (19%)

Query: 6   PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDV 65
           P    +K   G+  +       + R          ++ + + +       +   +G + +
Sbjct: 4   PPPKPVKP--GQVKVFRALYTFEPRTPDELYIEEGDI-IYITDMSDTNWWKGTSKGRTGL 60

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWK 119
           I +        + +   + +  LH A K+      +        V+              
Sbjct: 61  IPSNY------VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG------------L 102

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           DK G+T L+ A     K IVE+L  + +     I +N  NK G TAL
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPN-----IELNQQNKLGDTAL 144

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 73.4 bits (181), Expect = 6e-16
 Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 29/170 (17%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCL-------EVDNSLMIPLHRAALEGDS 63
            + +  +  +H  +  G+   +          CL        +D +    L+ A   G  
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWL--------RECLDNRVGVNGLDKAGSTALYWACHGGHK 119

Query: 64  DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKE 122
           D++  L +     L +    G+TALH A  K  +D  Q L+ + A++  +       + E
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR-------NIE 172

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
                 +AT      +++     ++           N +     +  +  
Sbjct: 173 KKLAFDMATNAACASLLKKKQGTDAV------RTLSNAEDYLDDEDSDLE 216

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.1 bits (196), Expect = 3e-17
 Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 24/163 (14%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
            ++ +G T +HL + +G A MV +        N       + S + PLH  A EG   V 
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGN-----LGNKSGLTPLHLVAQEGHVPVA 294

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNT 125
             L+      ++  T  G T LH+A         + L+   A  + K        K G +
Sbjct: 295 DVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-------TKLGYS 346

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
            LH A       IV LL++  ++       N V+  G T L +
Sbjct: 347 PLHQAAQQGHTDIVTLLLKNGAS------PNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.8 bits (185), Expect = 1e-15
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 25/173 (14%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
              + G T +H+     +  +V++        +         +   PLH AA +   +V 
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-----SPAWNGYTPLHIAAKQNQVEVA 228

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNT 125
           R+L+          +  G T LHLA ++  ++    L+ + A  +         +K G T
Sbjct: 229 RSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-------GNKSGLT 280

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL-CNANSQDSV 177
            LHL        + ++LI+          ++   + G T L +  +  +   V
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVM------VDATTRMGYTPLHVASHYGNIKLV 327

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
               S + PLH A+  G   +++ L+              ET LH+A +   ++  + L+
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLL 67

Query: 105 DE-AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQ 163
              AK          K K+  T LH A       +V+LL+  N+N       N     G 
Sbjct: 68  QNKAK---VNA----KAKDDQTPLHCAARIGHTNMVKLLLENNAN------PNLATTAGH 114

Query: 164 TALQL 168
           T L +
Sbjct: 115 TPLHI 119

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.5 bits (179), Expect = 6e-15
 Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 13/158 (8%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
           + N+ G T +HL++ +G   +  +  ++   +          PLH A+  G+  +++ L+
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-ATTRMGYTPLHVASHYGNIKLVKFLL 331

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHL 129
               + +   T  G + LH A ++  +D    L+   A  +           +G T L +
Sbjct: 332 QHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV-------SSDGTTPLAI 383

Query: 130 ATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQ 167
           A       + ++L            +   +K   +  +
Sbjct: 384 AKRLGYISVTDVLKVVTDETSF---VLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.1 bits (178), Expect = 8e-15
 Identities = 36/163 (22%), Positives = 54/163 (33%), Gaps = 24/163 (14%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
           +    G T +H+ + +G    V    E            +      PLH AA  G   V 
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQA-----CMTKKGFTPLHVAAKYGKVRVA 162

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNT 125
             L+            NG T LH+AV  +  D  + L+      H            G T
Sbjct: 163 ELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP-------AWNGYT 214

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
            LH+A      ++   L++   +       N  + QG T L L
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGS------ANAESVQGVTPLHL 251

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 24/95 (25%)

Query: 78  EKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKEGNTVLHLAT 131
                +G T LH+A         + L       +              + +  T LH+A 
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNV------------SNVKVETPLHMAA 55

Query: 132 LNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
                ++ + L++  +       +N   K  QT L
Sbjct: 56  RAGHTEVAKYLLQNKAK------VNAKAKDDQTPL 84

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.0 bits (118), Expect = 5e-07
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL-CNANSQDSV 177
             + G T LH+A+      IV+ L++  ++       N  N + +T L +   A   +  
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGAS------PNVSNVKVETPLHMAARAGHTEVA 63

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.6 bits (117), Expect = 6e-07
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 22/137 (16%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
              + G T +H+ S  G+ ++V+   ++    N             PLH+AA +G +D++
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN-----AKTKLGYSPLHQAAQQGHTDIV 360

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTV 126
             L+        +++S+G T L +A +         L        +       DK   + 
Sbjct: 361 TLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD---ETSFVLVSDKHRMSF 416

Query: 127 LHLATLNKLKQIVELLI 143
                       V+ ++
Sbjct: 417 PE---------TVDEIL 424

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 76.3 bits (189), Expect = 6e-17
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 21/160 (13%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIF---GEN-NRELCLEVDNSLMIPLHRAALEGDSDVI 66
           +++Q   + +H  +  G   +  +    G N +             PL  AA     + +
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-----TCSEDQRTPLMEAAENNHLEAV 60

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTV 126
           + L+      ++   + G T LHLA KK   +  Q L+   +          +D  G T 
Sbjct: 61  KYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC-----QDDGGWTP 114

Query: 127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           +  AT  K   +V+LL+ + S+      IN  + +    L
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSD------INIRDNEENICL 148

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 73.6 bits (182), Expect = 6e-16
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 14/123 (11%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
             D      LH AA +G  +V++ L+S     +      G T +  A +    D  + L+
Sbjct: 72  PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131

Query: 105 DE-AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQ 163
            + +  +        +D E N  LH A  +    I E+L+    +      ++ VN  G 
Sbjct: 132 SKGSDINI-------RDNEENICLHWAAFSGCVDIAEILLAAKCD------LHAVNIHGD 178

Query: 164 TAL 166
           + L
Sbjct: 179 SPL 181

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.4 bits (171), Expect = 2e-14
 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 29/177 (16%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGDSDVIR 67
            K+  G T +HL +  G   +V+     G+ +       D+    P+  A      D+++
Sbjct: 72  PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN---CQDDGGWTPMIWATEYKHVDLVK 128

Query: 68  ALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKE 122
            L+S    I         +     LH A      D  + L+      H         +  
Sbjct: 129 LLLSKGSDI-----NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV-------NIH 176

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFK 179
           G++ LH+A        V L +  +S+      +   NK+G+T LQ  + NSQ     
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSD------VTLKNKEGETPLQCASLNSQVWSAL 227

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 62.4 bits (153), Expect = 7e-12
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQAL- 103
             DN   I LH AA  G  D+   L++   + L  +  +G++ LH+A +++R D      
Sbjct: 139 IRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFL 197

Query: 104 -----VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
                V              K+KEG T L  A+LN        + +   +
Sbjct: 198 SRDSDVTL------------KNKEGETPLQCASLNSQVWSALQMSKALQD 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 76.3 bits (189), Expect = 6e-17
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 21/130 (16%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPES---LEKLTSNGETALHLAVKKSRSDAFQ 101
             D     PLH A ++G+   +  LV++  +    L+   +  +T LHLAV  +     +
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 102 ALVD-----EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRIN 156
            LV       A            D+ G T  HLA  ++    +  L+   +     + + 
Sbjct: 64  LLVTAGASPMAL-----------DRHGQTAAHLACEHRSPTCLRALLDSAAPGT--LDLE 110

Query: 157 TVNKQGQTAL 166
             N  G TAL
Sbjct: 111 ARNYDGLTAL 120

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 74.4 bits (184), Expect = 3e-16
 Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 25/166 (15%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCL---EVDNSLMIPLHRAALEGDSDVIR 67
             ++ G+T  HL         +R   ++     L     +   +  LH A      + ++
Sbjct: 74  ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKDKE 122
            L+    +       +G + L  AV+ +     Q L+       A+              
Sbjct: 134 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ-----------MYS 182

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
           G++ LH A+   L  +V  L+R  ++       +  N    T L +
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGAD------SSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 59.4 bits (145), Expect = 7e-11
 Identities = 22/144 (15%), Positives = 46/144 (31%), Gaps = 19/144 (13%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
            +N  G T +H+         V++  E   ++      S   PL  A       +++ L+
Sbjct: 111 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKEGN 124
                 +     +G +ALH A  +      + L                     K+   +
Sbjct: 171 QHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL------------KNCHND 217

Query: 125 TVLHLATLNKLKQIVELLIRENSN 148
           T L +A   ++  I+       ++
Sbjct: 218 TPLMVARSRRVIDILRGKATRPAS 241

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 75.7 bits (187), Expect = 1e-16
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 21/131 (16%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPE---SLEKLTSNGETALHLAVKKSRSDAFQ 101
           ++       LH A +  +  +   ++         L    +  +T LHLAV  ++ +  +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 102 AL------VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRI 155
           AL       +             +D  GNT LHLA        V +L +  +   +   +
Sbjct: 63  ALLGAGCDPEL------------RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110

Query: 156 NTVNKQGQTAL 166
              N  G T L
Sbjct: 111 KATNYNGHTCL 121

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 74.9 bits (185), Expect = 2e-16
 Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 21/164 (12%)

Query: 12  KNQRGETTMHL----LSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIR 67
             + G++ +HL            ++R    +   L    +N    PLH A +    ++  
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAE 62

Query: 68  ALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEG 123
           AL+           E     G T LHLA ++    +   L     +     +    +  G
Sbjct: 63  ALLGAGCDP-----ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117

Query: 124 NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ-GQTAL 166
           +T LHLA+++    IVELL+   ++      +N      G+TAL
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGAD------VNAQEPCNGRTAL 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 66.0 bits (162), Expect = 3e-13
 Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 29/178 (16%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIF---GENNRELCL--EVDNSLMIPLHRAALEGDSDV 65
           +++ RG T +HL    G    V +            +    + +    LH A++ G   +
Sbjct: 73  LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWK 119
           +  LVS+  +   +   NG TALHLAV     D    L      V+              
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR------------V 180

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
             +G +   L       +I + L +             +  + +        +     
Sbjct: 181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLE------NLQMLPESEDEESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.9 bits (159), Expect = 9e-13
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 78  EKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQ 137
           ++LT +G++ LHLA+          ++ + K         +++    T LHLA +    +
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLAVITNQPE 59

Query: 138 IVELLIRENSNRRIMIRINTVNKQGQTALQL-CNANSQDSV 177
           I E L+    +          + +G T L L C      SV
Sbjct: 60  IAEALLGAGCD------PELRDFRGNTPLHLACEQGCLASV 94

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 19/135 (14%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDN-SLMIPLHRAALEGDSDVI 66
            N  G T +HL S  G   +V +        N       +  +    LH A    + D++
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVN-----AQEPCNGRTALHLAVDLQNPDLV 167

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNT 125
             L+    + + ++T  G +   L   +  +   Q L     ++ +          E   
Sbjct: 168 SLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM-------LPESED 219

Query: 126 VLHLATLNKLKQIVE 140
                T ++  +  E
Sbjct: 220 EESYDTESEFTEFTE 234

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 73.6 bits (182), Expect = 1e-16
 Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 33/176 (18%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVS 71
            N   +  +   +  GD   V+         C +++     PLH AA      V+  L+ 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 72  ----ICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDK 121
               +           G   LH A      +  + L      V+              D 
Sbjct: 64  HGADV-----HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV------------ADL 106

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
              T LH A      +I +LL++  ++          N+ G T L L      D  
Sbjct: 107 WKFTPLHEAAAKGKYEICKLLLQHGAD------PTKKNRDGNTPLDLVKDGDTDIQ 156

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.8 bits (185), Expect = 2e-16
 Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 12/155 (7%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVS 71
            +  G  T +    +    ++  F      L  + D +    LH AA    SD  + L+ 
Sbjct: 19  CSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE 78

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLAT 131
              +      + G T LH AV       FQ L+     +R   L   +  +G T L LA 
Sbjct: 79  ASAD-ANIQDNMGRTPLHAAVSADAQGVFQILI----RNRATDLDA-RMHDGTTPLILAA 132

Query: 132 LNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
              ++ ++E LI  +++      +N V+  G++AL
Sbjct: 133 RLAVEGMLEDLINSHAD------VNAVDDLGKSAL 161

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 71.0 bits (175), Expect = 6e-15
 Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 36/171 (21%)

Query: 9   ASIKNQR---GETTMHLLSTDGDARMVRIF---GEN-NRELCLEVDNSLMIPLHRAALEG 61
           AS+ NQ    GET +HL +    +   +       + N       DN    PLH A    
Sbjct: 47  ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-----IQDNMGRTPLHAAVSAD 101

Query: 62  DSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHL 115
              V + L+      L+    +G T L LA + +     + L      V+          
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--------- 152

Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
               D  G + LH A          +L++  +N       +  N + +T L
Sbjct: 153 ---VDDLGKSALHWAAAVNNVDAAVVLLKNGAN------KDMQNNREETPL 194

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 70.2 bits (173), Expect = 1e-14
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 31/167 (18%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGDSDVIR 67
           I++  G T +H   +     + +I       + +      +    PL  AA      ++ 
Sbjct: 85  IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD---ARMHDGTTPLILAARLAVEGMLE 141

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDK 121
            L++   + +  +   G++ALH A   +  DA   L       D             ++ 
Sbjct: 142 DLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM------------QNN 188

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
              T L LA      +  ++L+   +N       +  +   +    +
Sbjct: 189 REETPLFLAAREGSYETAKVLLDHFAN------RDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.8 bits (159), Expect = 9e-13
 Identities = 32/133 (24%), Positives = 44/133 (33%), Gaps = 36/133 (27%)

Query: 53  PLHRAALEGDSDVIRALVSI--CPESLEKLTS-----------NGETALHLAVKKSRSDA 99
           PL  A+  G              P  +                 GETALHLA + SRSDA
Sbjct: 13  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72

Query: 100 FQAL------VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMI 153
            + L       +             +D  G T LH A     + + ++LI    NR    
Sbjct: 73  AKRLLEASADANI------------QDNMGRTPLHAAVSADAQGVFQILI---RNRATD- 116

Query: 154 RINTVNKQGQTAL 166
            ++     G T L
Sbjct: 117 -LDARMHDGTTPL 128

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.8 bits (159), Expect = 1e-12
 Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 22/145 (15%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
            +   G T + L +      M+     +    N      VD+     LH AA   + D  
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALHWAAAVNNVDAA 173

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSH---RKEHLFTWKDKEG 123
             L+        +  +  ET L LA ++   +  + L+     H   R        D   
Sbjct: 174 VVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLL----DHFANRDI-----TDHMD 223

Query: 124 NTVLHLATLNKLKQIVELLIRENSN 148
                +A       IV LL  E+ +
Sbjct: 224 RLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.6 bits (130), Expect = 7e-09
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 19/106 (17%)

Query: 83  NGETALHLAVKKSRSDAFQALVDEAKSHRKE----------HLFTWKDKEGNTVLHLATL 132
           +G T L +A         +    E +                L    D+ G T LHLA  
Sbjct: 9   DGFTPLMIASC--SGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL-CNANSQDSV 177
                  + L+  +++       N  +  G+T L    +A++Q   
Sbjct: 67  YSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGVF 106

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 74.0 bits (183), Expect = 4e-16
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFQA 102
           + D    IPLH +      ++   L+S        +    +G T  H+A      +  ++
Sbjct: 31  QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90

Query: 103 LVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQG 162
           L         +        +G T LHLA   K  ++ + LI   ++      +   +K  
Sbjct: 91  LY----DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS------VRIKDKFN 140

Query: 163 QTAL 166
           Q  L
Sbjct: 141 QIPL 144

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 73.3 bits (181), Expect = 7e-16
 Identities = 43/164 (26%), Positives = 63/164 (38%), Gaps = 26/164 (15%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGEN--NRELCLEVDNSLMIPLHRAALEGDSDVIRAL 69
           K+Q G   +H   +     +         N  L    D+S   P H A   G+ +V+++L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91

Query: 70  VSICPES-LEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKE 122
                +  L K+T+ G T LHLAV K   +  Q L      V              KDK 
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------------KDKF 139

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
               LH A      +++ELL     +      +N  +KQG T L
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 67.5 bits (166), Expect = 9e-14
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHR 111
           PLH+A +E +   ++ L+   P  L +   +G   LH +V     +    L+ +    + 
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 112 KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
            ++     D  G T  H+A      ++V+ L            +N +  QG T L
Sbjct: 65  DDY----PDDSGWTPFHIACSVGNLEVVKSLYDRPLK----PDLNKITNQGVTCL 111

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 67.1 bits (165), Expect = 1e-13
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 11/124 (8%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
           ++ N  +  LH A  +   +V + L+      +       +  LH A         + L 
Sbjct: 102 KITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLC 160

Query: 105 DEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQT 164
              KS         +DK+G T L  A          LL+ +          + V+ +G  
Sbjct: 161 GLGKSAVNW-----QDKQGWTPLFHALAEGHGDAAVLLVEKYG-----AEYDLVDNKGAK 210

Query: 165 ALQL 168
           A  +
Sbjct: 211 AEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 17/136 (12%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVIR 67
              +G T +HL        + +   EN            D    IPLHRAA  G   +I 
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-----IKDKFNQIPLHRAASVGSLKLIE 157

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVL 127
            L  +   ++      G T L  A+ +   DA   LV++  +          D +G    
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL-----VDNKGAKAE 212

Query: 128 HLATLNKLKQIVELLI 143
            +A      Q+ +  +
Sbjct: 213 DVALNE---QVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.4 bits (114), Expect = 8e-07
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 22/90 (24%)

Query: 84  GETALHLAVKKSRSDAFQ-------ALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLK 136
               LH A  ++     Q       +L+ +            KD++G   LH +   +  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQ------------KDQDGRIPLHWSVSFQAH 49

Query: 137 QIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           +I   L+ +  N  + +  +  +  G T  
Sbjct: 50  EITSFLLSKMEN--VNLD-DYPDDSGWTPF 76

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 72.1 bits (178), Expect = 7e-16
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 15/152 (9%)

Query: 16  GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE 75
              ++H L+  G+   ++        L  + D     PL  A+  G+ + +R L+    +
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 76  SLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHLATLNK 134
               L    E+AL LA     +D    L++     +         D  G T L  A    
Sbjct: 62  -PHILAKERESALSLASTGGYTDIVGLLLERDVDINIY-------DWNGGTPLLYAVRGN 113

Query: 135 LKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
             + VE L+   ++      + T    G T +
Sbjct: 114 HVKCVEALLARGAD------LTTEADSGYTPM 139

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 64.4 bits (158), Expect = 5e-13
 Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 32/163 (19%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
             ++RG T +   S  G+   VR   E     +      +       L  A+  G +D++
Sbjct: 31  KPDERGFTPLIWASAFGEIETVRFLLEWGADPH-----ILAKERESALSLASTGGYTDIV 85

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKDK 121
             L+    + +     NG T L  AV+ +     +AL+        +             
Sbjct: 86  GLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE-----------AD 133

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQT 164
            G T + LA     +++ +++            +   N     
Sbjct: 134 SGYTPMDLAVALGYRKVQQVIENHILK------LFQSNLVPAD 170

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 37/191 (19%), Positives = 51/191 (26%), Gaps = 42/191 (21%)

Query: 8   LASIKNQRG--ETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDV 65
            A +  Q G     M LL  D D+   +         C +        LH A  +     
Sbjct: 49  KAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ---CTDEFYQGHSALHIAIEKRSLQC 105

Query: 66  IRALVS------------ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKE 113
           ++ LV                +        GE  L LA    + D    L++        
Sbjct: 106 VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL 165

Query: 114 HLFTWKDKEGNTVLHLATLNK----------------LKQIVELLIRENSNRRIMIRINT 157
                 D  GNTVLH   +                  L Q+   L               
Sbjct: 166 EA---TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQL------EEI 216

Query: 158 VNKQGQTALQL 168
            N QG T L+L
Sbjct: 217 SNHQGLTPLKL 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 22/149 (14%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLT-------SNGETALHLAVKKSRS---DAFQA 102
            L      G  + +  L+     + + LT       S G+T L  AV   +         
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 103 LVDEAKSHRKEHLFTW-----KDKEGNTVLHLATLNKLKQIVELLIR-------ENSNRR 150
           L+   K               +  +G++ LH+A   +  Q V+LL+            R 
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124

Query: 151 IMIRINTVNKQGQTALQLCNANSQDSVFK 179
                 T    G+  L L     Q  V  
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVT 153

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 60.2 bits (146), Expect = 5e-11
 Identities = 32/175 (18%), Positives = 55/175 (31%), Gaps = 30/175 (17%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIF------------GENNRELCLEVDNSLMIPLHRAAL 59
           +  +G + +H+       + V++             G   ++          +PL  AA 
Sbjct: 86  EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC 145

Query: 60  EGDSDVIRALVS--ICPESLEKLTSNGETALHLAVKKSR-SDAFQALVDEAKSHRKEH-- 114
               DV+  L+     P SLE   S G T LH  V  +  S    ALV        +   
Sbjct: 146 TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA 205

Query: 115 -------LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQG 162
                  L    + +G T L LA      +I   +++   +          +   
Sbjct: 206 RLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS------GAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 12/94 (12%)

Query: 84  GETALHLAVKKSRSDAFQALVDEAKSHRKE---HLFTWKDKEGNTVLHLATLNK---LKQ 137
               L   V +   +    L++  + + K      +T +   G T L  A LN    +  
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYT-EGSTGKTCLMKAVLNLQDGVNA 60

Query: 138 IVELLI-----RENSNRRIMIRINTVNKQGQTAL 166
            +  L+       N    +  +      QG +AL
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSAL 94

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 20/126 (15%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAF 100
           + D +    LH AA    SD  + L+               + G T LH AV       F
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASADA-----NIQDNMGRTPLHAAVSADAQGVF 74

Query: 101 QALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
           Q L+     +R   L   +  +G T L LA    ++ ++E LI  +++      +N V+ 
Sbjct: 75  QILI----RNRATDLDA-RMHDGTTPLILAARLAVEGMLEDLINSHAD------VNAVDD 123

Query: 161 QGQTAL 166
            G++AL
Sbjct: 124 LGKSAL 129

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 70.9 bits (175), Expect = 4e-15
 Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 36/171 (21%)

Query: 9   ASIKNQR---GETTMHLLSTDGDARMVRIF---GEN-NRELCLEVDNSLMIPLHRAALEG 61
           AS+ NQ    GET +HL +    +   +       + N       DN    PLH A    
Sbjct: 15  ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-----IQDNMGRTPLHAAVSAD 69

Query: 62  DSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHL 115
              V + L+      L+    +G T L LA + +     + L      V+          
Sbjct: 70  AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--------- 120

Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
               D  G + LH A          +L++  +N       +  N + +T L
Sbjct: 121 ---VDDLGKSALHWAAAVNNVDAAVVLLKNGAN------KDMQNNREETPL 162

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 67.4 bits (166), Expect = 8e-14
 Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 25/164 (15%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
           I++  G T +H   +     + +I   N         +    PL  AA      ++  L+
Sbjct: 53  IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 112

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKEGN 124
           +   + +  +   G++ALH A   +  DA   L       D             ++    
Sbjct: 113 NSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM------------QNNREE 159

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
           T L LA      +  ++L+   +N       +  +   +    +
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFAN------RDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 60.5 bits (148), Expect = 2e-11
 Identities = 27/144 (18%), Positives = 43/144 (29%), Gaps = 30/144 (20%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
            +   G T + L +      M+     +    N      VD+     LH AA   + D  
Sbjct: 87  ARMHDGTTPLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALHWAAAVNNVDAA 141

Query: 67  RALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSH---RKEHLFTWK 119
             L+           +   +  ET L LA ++   +  + L+     H   R        
Sbjct: 142 VVLLKNGANK-----DMQNNREETPLFLAAREGSYETAKVLL----DHFANRDI-----T 187

Query: 120 DKEGNTVLHLATLNKLKQIVELLI 143
           D        +A       IV LL 
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLD 211

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 17/135 (12%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAF 100
           +        LH AAL  + +    L+     +  E +      G+TALH+AV     +  
Sbjct: 32  QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91

Query: 101 QALVD-------EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMI 153
           +AL+         A      +        G   L  A     ++IV LLI   ++     
Sbjct: 92  RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD----- 146

Query: 154 RINTVNKQGQTALQL 168
            I   +  G T L +
Sbjct: 147 -IRAQDSLGNTVLHI 160

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 33/183 (18%), Positives = 56/183 (30%), Gaps = 38/183 (20%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIF---GEN-NRELCLEVDNSLMIPLHRAALEGDSDVIR 67
           +   GET +H+ +   +     +          E            LH A +  + +++R
Sbjct: 33  RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92

Query: 68  ALVS------------ICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKS 109
           AL++            +       L   GE  L  A      +  + L      +     
Sbjct: 93  ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA--- 149

Query: 110 HRKEHLFTWKDKEGNTVLHLATLNKLKQIV----ELLIRENSNRRIMIRINTVNKQGQTA 165
                    +D  GNTVLH+  L   K        LL+  +    +       N QG T 
Sbjct: 150 ---------QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP 200

Query: 166 LQL 168
            +L
Sbjct: 201 FKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.9 bits (159), Expect = 7e-13
 Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 24/129 (18%)

Query: 53  PLHRAALEGDSDVIRAL-----VSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEA 107
           PL  AA E D   +  L       +      +  + GETALH+A      +A   L+   
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEV-----HQRGAMGETALHIAALYDNLEAAMVLM--- 57

Query: 108 KSHR---KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR-------ENSNRRIMIRINT 157
                       T +  EG T LH+A +N+   +V  L+          +      R + 
Sbjct: 58  -EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHN 116

Query: 158 VNKQGQTAL 166
           +   G+  L
Sbjct: 117 LIYYGEHPL 125

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 20/90 (22%)

Query: 84  GETALHLAVKKSRSDAFQAL-------VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLK 136
            E+ L LA K++   A   L       V +            +   G T LH+A L    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQ------------RGAMGETALHIAALYDNL 50

Query: 137 QIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           +   +L+       +   + +   +GQTAL
Sbjct: 51  EAAMVLMEAAPE-LVFEPMTSELYEGQTAL 79

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 27/159 (16%)

Query: 18  TTMHLLSTDGDARMVRIF----GENNRELCLEVDNSLMIPLHRAALEGDS---DVIRALV 70
            ++   + + D   V+        N ++       S    LH A          V   L+
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQ-----PQSHETALHCAVASLHPKRKQVAELLL 234

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHL 129
                 + +   +  T LH+A +++ +D  + L    AK +         D  G T LH 
Sbjct: 235 RKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL-------DSLGQTALHR 286

Query: 130 ATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
           A L    Q   LL+   S+       + ++ QG TA Q+
Sbjct: 287 AALAGHLQTCRLLLSYGSD------PSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.4 bits (176), Expect = 1e-14
 Identities = 33/157 (21%), Positives = 50/157 (31%), Gaps = 38/157 (24%)

Query: 16  GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRAL-----V 70
           G++ + L      A                        L  AA  G+ + + AL     V
Sbjct: 4   GKSALDLADPSAKA--------VLT------GEYKKDELLEAARSGNEEKLMALLTPLNV 49

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHL 129
           +              T LHLA   +R    Q L+   A  H K       DK G   LH 
Sbjct: 50  NC-----HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK-------DKGGLVPLHN 97

Query: 130 ATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           A      ++ ELL++  +       +N ++    T L
Sbjct: 98  ACSYGHYEVTELLLKHGAC------VNAMDLWQFTPL 128

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.9 bits (154), Expect = 9e-12
 Identities = 29/176 (16%), Positives = 61/176 (34%), Gaps = 33/176 (18%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIF---GEN-NRELCLEVDNSLMIPLHRAALEGDSDVI 66
             + R  T +HL +     R+V++    G + +       D   ++PLH A   G  +V 
Sbjct: 53  ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-----AKDKGGLVPLHNACSYGHYEVT 107

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNT 125
             L+      +  +     T LH A  K+R +    L+   A            +  G +
Sbjct: 108 ELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV-------NCHGKS 159

Query: 126 VLHLATLNKLKQIVELLIR--------ENSNRRIMIR-------INTVNKQGQTAL 166
            + +A   +L++ +    +          ++   + +            +  +TAL
Sbjct: 160 AVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 20/121 (16%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
           E +   M PLH AA    +DV+  L     + +  L S G+TALH A         + L+
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLL 300

Query: 105 DE-AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQ 163
              +              +G T   +       + V+ ++ E++       + T +   +
Sbjct: 301 SYGSDPSII-------SLQGFTAAQMGN-----EAVQQILSESTP------MRTSDVDYR 342

Query: 164 T 164
            
Sbjct: 343 L 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.2 bits (108), Expect = 8e-06
 Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 26/85 (30%)

Query: 83  NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLH-LATLNKLKQIVEL 141
            G++AL LA          A                  +     L   A     ++++ L
Sbjct: 3   FGKSALDLADPS-------AKAVL------------TGEYKKDELLEAARSGNEEKLMAL 43

Query: 142 LIRENSNRRIMIRINTVNKQGQTAL 166
           L   N N       +  + +  T L
Sbjct: 44  LTPLNVN------CHASDGRKSTPL 62

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 72.6 bits (179), Expect = 3e-15
 Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 22/129 (17%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
             +     PLH A +  D++++R L     +  +   + G T LHLAV+   +   + L+
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212

Query: 105 D-----EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN 159
                  A+              G T L  A L     +  LL    +            
Sbjct: 213 KAGADPTAR-----------MYGGRTPLGSALLRPNPILARLLRAHGAP------EPEDG 255

Query: 160 KQGQTALQL 168
               +    
Sbjct: 256 GDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 27/152 (17%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFQA 102
            V       LH A +      +  L+      E L+     G+TALHLA     +   + 
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 103 L------VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI-------RENSNR 149
           L      V               ++ G+T LHLA   +      +L+       R+ S+ 
Sbjct: 64  LYAAGAGVLV------------AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

Query: 150 RIMIRINTVNKQGQTALQLCNANSQDSVFKEI 181
            +    +           + +  + ++  +  
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 25/167 (14%), Positives = 46/167 (27%), Gaps = 17/167 (10%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGEN--NRELCLEVDNSLMIPLHRAALEGDSDVIRAL 69
             + G+T +HL         +          E     ++     LH AA+ G++  +  L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 70  VSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-------EAKSHRKEHLFTWKDKE 122
            +     +      G TALHLA +         L+        +A               
Sbjct: 65  YAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 123 GNTVLHL-ATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
            +    + +  N   +                 +   N  G T L +
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQ------LEAENYDGHTPLHV 164

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 11/91 (12%)

Query: 77  LEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHLATLNKL 135
              +T +G+TALHLAV          L+   A     +     ++  G T LHLA +   
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL----QNDLGQTALHLAAILGE 57

Query: 136 KQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
              VE L    +       +    + G TAL
Sbjct: 58  ASTVEKLYAAGAG------VLVAERGGHTAL 82

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 17/137 (12%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
            +N  G T +H+     DA MVR+  +   +L          PLH A     + V+  L+
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212

Query: 71  S----ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNT 125
                            G T L  A+ +      + L    A              +  +
Sbjct: 213 KAGADP-----TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED-------GGDKLS 260

Query: 126 VLHLATLNKLKQIVELL 142
               +  +      +  
Sbjct: 261 PCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 115 LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL-CNANS 173
           +F +  ++G+T LHLA +++ +  ++ L+  ++       ++  N  GQTAL L      
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---YLDLQNDLGQTALHLAAILGE 57

Query: 174 QDSV 177
             +V
Sbjct: 58  ASTV 61

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 70.9 bits (175), Expect = 3e-15
 Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 30/162 (18%)

Query: 10  SIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRAL 69
           S  ++ GE    +       + +              D+    PL  A + G  + I  L
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRN-------YRDSYNRTPLMVACMLGMENAIDKL 54

Query: 70  VSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKDKEGN 124
           V    +  +K    G TAL  AVK +R    + L+        K           D  G 
Sbjct: 55  VENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-----------DFSGK 102

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           T L  + +    ++   L+   +N      +N  N +G+T L
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGAN------VNDRNLEGETPL 138

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.4 bits (166), Expect = 5e-14
 Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 28/166 (16%)

Query: 8   LASIKNQRGETTMHLLSTDGDARMVRIFGEN--NRELCLEVDNSLMIPLHRAALEGDSDV 65
           L + ++    T + +    G    +    EN    E   + D      L  A       +
Sbjct: 27  LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE---DKDIEGSTALIWAVKNNRLGI 83

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKD 120
              L+S     +     +G+T L  ++    S+    L++       +           +
Sbjct: 84  AEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR-----------N 131

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
            EG T L +A+     +IV+ L+   ++      I+  +  G TA 
Sbjct: 132 LEGETPLIVASKYGRSEIVKKLLELGAD------ISARDLTGLTAE 171

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 20/111 (18%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
             D S   PL  + + G S++   L+      +      GET L +A K  RS+  + L+
Sbjct: 96  TKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLL 154

Query: 105 D-----EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRR 150
           +      A+           D  G T    A +   ++++++       RR
Sbjct: 155 ELGADISAR-----------DLTGLTAEASARIFGRQEVIKIFT---EVRR 191

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 22/134 (16%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPE--SLEKLTSNGETALHLAVKKSRSDAFQ- 101
             + S    LH+AA   D  ++  +++       +E+L  NG TAL +       D    
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

Query: 102 --------ALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN-SNRRIM 152
                   A VD   + RK+     +  +G T LH A       IV+ L+ E  SN    
Sbjct: 254 AKLLVEKGAKVDYDGAARKDS----EKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---- 305

Query: 153 IRINTVNKQGQTAL 166
              +  ++ G+T +
Sbjct: 306 --KDKQDEDGKTPI 317

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 33/175 (18%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRI------FGEN-NRELCLEVDNSLMIPLHRAALEGDS 63
           I N+   + +H  + + D  M+           +       E+D + M  L   A     
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-----ELDRNGMTALMIVAHNEGR 248

Query: 64  DVIRA---LVS-------ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKE 113
           D + +   LV              +     G TALH A + S     + LV E  S++ +
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK 308

Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
                +D++G T + LA      ++V  LI++ ++      +  V+    TA QL
Sbjct: 309 -----QDEDGKTPIMLAAQEGRIEVVMYLIQQGAS------VEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.6 bits (171), Expect = 5e-14
 Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 28/173 (16%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEV-------DNSLMIPLHRAALEGDSD 64
             +   T +H ++++  A        +  + C+         D     PL  A L     
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK------EHLFTW 118
           ++  L+    +       +  +ALH A           ++    +  K      E     
Sbjct: 181 LVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYML----NSTKLKGDIEE----- 230

Query: 119 KDKEGNTVLHLATLNKLK---QIVELLIRE--NSNRRIMIRINTVNKQGQTAL 166
            D+ G T L +   N+ +      +LL+ +    +     R ++   +G+TAL
Sbjct: 231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 26/171 (15%), Positives = 50/171 (29%), Gaps = 16/171 (9%)

Query: 2   ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNREL-CLEVDNSLMIPLHRAALE 60
           A +W  +  ++N+      H   T     ++    +   +    E+ +  + P  +    
Sbjct: 14  ASVW--MPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGN 71

Query: 61  GDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWK 119
           G+  +     +      E         LH     S     + +  E              
Sbjct: 72  GNDFLGDFNHTNLQIPTEP-EPESPIKLHTEAAGSY-AITEPITRESVNII--------D 121

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMI--RINTVNKQGQTALQL 168
            +   TVLH    N   +  E LI   +   I     +N ++    T L L
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 26/154 (16%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIF----------GENNRELCLEVDNSLMIPLHRAALE 60
             ++ G T + +++ +     V               +               LH AA  
Sbjct: 230 ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289

Query: 61  GDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHL 115
            +  +++ LV     + +K   +G+T + LA ++ R +    L+      EA        
Sbjct: 290 SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV------- 342

Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNR 149
               D   +T   LA  N    IV++  R    R
Sbjct: 343 ----DATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 6/99 (6%), Positives = 15/99 (15%), Gaps = 21/99 (21%)

Query: 79  KLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQI 138
           +  ++ + +L  A         +                               N    +
Sbjct: 32  QSITSSQHSLLEASYDGYIKRQRNE---------------LQHYSLYPNPQGYGNGNDFL 76

Query: 139 VELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
            +                    +    L    A S    
Sbjct: 77  GDFNHTNLQI------PTEPEPESPIKLHTEAAGSYAIT 109

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 70.6 bits (174), Expect = 4e-15
 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 35/183 (19%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
           +K       +   +     ++  I  +     +     EVD     PL+ A    D ++ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVD-----EVDTEGNTPLNIAVHNNDIEIA 55

Query: 67  RALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKE 122
           +AL+     I         S  ++    A  + R++    ++  A     +      ++ 
Sbjct: 56  KALIDRGADI-----NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK-----HNRY 105

Query: 123 GNTVLHLATLNKLKQIVELLI---RENSNRRIMIRINTVNKQGQTALQL-CNANSQDSVF 178
           G   L  A        V+LL+   RE+        I+  N  G TAL         + ++
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGRED--------IDFQNDFGYTALIEAVGLREGNQLY 157

Query: 179 KEI 181
           ++I
Sbjct: 158 QDI 160

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 65.2 bits (160), Expect = 4e-13
 Identities = 27/167 (16%), Positives = 62/167 (37%), Gaps = 25/167 (14%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
             +  G T +++   + D  + +   +     N       ++    P   A  +G ++++
Sbjct: 34  EVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-----LQNSISDSPYLYAGAQGRTEIL 88

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTV 126
             ++      L K    G  AL  A +K   D  + L+++ +    +     ++  G T 
Sbjct: 89  AYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED-IDF----QNDFGYTA 143

Query: 127 LHLATL-----NKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
           L  A          + IV+LL+   ++       +  +  G+TA+  
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLMENGAD------QSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 58.6 bits (143), Expect = 8e-11
 Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 29/147 (19%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGDSDVIR 67
           ++N   ++        G   ++         +     + +      L  AA +G  D ++
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN---KHNRYGGNALIPAAEKGHIDNVK 123

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFQ-----------ALVDEAKSHRKEHLF 116
            L+    E ++     G TAL  AV     +              A              
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI---------- 173

Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLI 143
             KD  G T +  A      +I ++L 
Sbjct: 174 --KDNSGRTAMDYANQKGYTEISKILA 198

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 72.1 bits (178), Expect = 4e-15
 Identities = 26/162 (16%), Positives = 62/162 (38%), Gaps = 24/162 (14%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGDSDVIR 67
                  T +      G    V +    G +     ++ ++ L  P+H AA  G  + + 
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGAS-----VQPESDLASPIHEAARRGHVECVN 174

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTV 126
           +L++     ++   S+  T L+LA +  +    + L++  A  +        + K  ++ 
Sbjct: 175 SLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGADVN--------QGKGQDSP 225

Query: 127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
           LH       +++  LL+   ++          N +G+  ++L
Sbjct: 226 LHAVVRTASEELACLLMDFGAD------TQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.8 bits (146), Expect = 7e-11
 Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 34/124 (27%)

Query: 53  PLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQAL----- 103
           P+H AA+ G    +R L+S    +       +T++  + LH A         + L     
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAV-----NIITADHVSPLHEACLGGHLSCVKILLKHGA 116

Query: 104 -VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQG 162
            V+                + +T L  A ++     V LL++  ++      +       
Sbjct: 117 QVNG------------VTADWHTPLFNACVSGSWDCVNLLLQHGAS------VQP-ESDL 157

Query: 163 QTAL 166
            + +
Sbjct: 158 ASPI 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 28/140 (20%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAF 100
            V      PL  A + G  D +  L+     + PES      +  + +H A ++   +  
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES------DLASPIHEAARRGHVECV 173

Query: 101 QALVDEAKSHR--KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV 158
            +L+    ++    +H    K     T L+LA  N+ +  V+ L+   ++      +N  
Sbjct: 174 NSLI----AYGGNIDH----KISHLGTPLYLACENQQRACVKKLLESGAD------VNQ- 218

Query: 159 NKQGQTALQL-CNANSQDSV 177
            K   + L       S++  
Sbjct: 219 GKGQDSPLHAVVRTASEELA 238

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
              + L  PL+ A        ++ L+    + + +     ++ LH  V+ +  +    L+
Sbjct: 185 HKISHLGTPLYLACENQQRACVKKLLESGAD-VNQ-GKGQDSPLHAVVRTASEELACLLM 242

Query: 105 DE-AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
           D  A +  K       + EG   + L            L RE ++
Sbjct: 243 DFGADTQAK-------NAEGKRPVELVPPES-PLAQLFLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.0 bits (118), Expect = 3e-07
 Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 24/126 (19%)

Query: 57  AALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
            +          LV     +     ++   +G                  L+ +A S   
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS--- 58

Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL-CNA 171
                       + +H A ++  +  +  LI +         +N +     + L   C  
Sbjct: 59  ----------DWSPMHEAAIHGHQLSLRNLISQGWA------VNIITADHVSPLHEACLG 102

Query: 172 NSQDSV 177
                V
Sbjct: 103 GHLSCV 108

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.8 bits (172), Expect = 6e-15
 Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 33/169 (19%)

Query: 8   LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIR 67
           + S     G     +   DG +           +    V +    P   AA + D   + 
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALS 61

Query: 68  ALVS---ICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWK 119
            L+    +     + +  NG TAL            + L +     + +           
Sbjct: 62  QLLEDRDV-----DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD---------- 106

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
            + G T LH+A      ++VE L+   ++      I   +++G TAL+L
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGAD------IEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 59.4 bits (145), Expect = 4e-11
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 24/140 (17%)

Query: 12  KNQRGETTMHLLSTDGDARMVR--IFGEN-NRELCLEVDNSLMIPLHRAALEGDSDVIRA 68
                ET     +   D + +   +   + +      VD +    L   A  G    +R 
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDRDVD-----AVDENGRTALLFVAGLGSDKCVRL 94

Query: 69  LVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKDKEG 123
           L     +   +    G TALH+A    R +  +ALV+     E +           D+ G
Sbjct: 95  LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-----------DERG 143

Query: 124 NTVLHLATLNKLKQIVELLI 143
            T L LA            +
Sbjct: 144 LTALELAREILKTTPKGNPM 163

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 68.6 bits (169), Expect = 7e-15
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 15/115 (13%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHR 111
            L  AA  GD   +R L+       + L   G+TAL + +  S +     L+ + A  + 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS-TAIALELLKQGASPNV 63

Query: 112 KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
                  +D  G + +H A        +++L+   ++      +N  +  G   +
Sbjct: 64  -------QDTSGTSPVHDAARTGFLDTLKVLVEHGAD------VNVPDGTGALPI 105

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 67.1 bits (165), Expect = 4e-14
 Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 25/159 (15%)

Query: 15  RGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVS--- 71
           R    +   +  GD + VR            ++      L      G + +   L+    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGA 59

Query: 72  -ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHL 129
                      ++G + +H A +    D  + LV+  A  +         D  G   +HL
Sbjct: 60  SP-----NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-------DGTGALPIHL 107

Query: 130 ATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
           A       +V  L    S+      ++  + +G T L+L
Sbjct: 108 AVQEGHTAVVSFLA-AESD------LHRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 60.1 bits (147), Expect = 1e-11
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 16/103 (15%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAF 100
             D S   P+H AA  G  D ++ LV     +           G   +HLAV++  +   
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-----NVPDGTGALPIHLAVQEGHTAVV 117

Query: 101 QALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
             L  E+  HR+       D  G T L LA     + +V++L 
Sbjct: 118 SFLAAESDLHRR-------DARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.2 bits (90), Expect = 6e-04
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVS---ICPESLEKLTSNGETALHLAVKKSRSDAFQ 101
             D +  +P+H A  EG + V+  L +   +      +  + G T L LA+++   D   
Sbjct: 96  VPDGTGALPIHLAVQEGHTAVVSFLAAESDL-----HRRDARGLTPLELALQRGAQDLVD 150

Query: 102 ALVD 105
            L  
Sbjct: 151 ILQG 154

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.4 bits (176), Expect = 8e-15
 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 17/160 (10%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
           + + + +    L    G    +       ++   +V          A   GD++ +  L+
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKT--KVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHL 129
               + +     +G TALH A      D  + LV+  A  ++        D EG   LH 
Sbjct: 61  ERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-------DNEGWIPLHA 112

Query: 130 ATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
           A       I E LI + ++      +  VN +G T L + 
Sbjct: 113 AASCGYLDIAEYLISQGAH------VGAVNSEGDTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 32/168 (19%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
             N  G+T + +   +    +++                +             D  + L 
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQN-------EVNRQGVDIEAARKEEERIMLRDARQWLN 186

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKEGN 124
           S     +     +G TALH+A  K  ++  + L      V+             KD +G 
Sbjct: 187 SGHINDVRH-AKSGGTALHVAAAKGYTEVLKLLIQARYDVNI------------KDYDGW 233

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
           T LH A     ++   +L+    +      +  VNK GQTA  + + +
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCD------MEAVNKVGQTAFDVADED 275

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 63.7 bits (156), Expect = 4e-12
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 22/156 (14%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVS 71
            +  G   +H  ++ G   +          +   V++    PL  A  E   ++++  V+
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHLA 130
                  +   + E A     +    DA Q L        R         K G T LH+A
Sbjct: 161 -------RQGVDIEAARKEEERIMLRDARQWLNSGHINDVR-------HAKSGGTALHVA 206

Query: 131 TLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
                 ++++LLI+   +      +N  +  G T L
Sbjct: 207 AAKGYTEVLKLLIQARYD------VNIKDYDGWTPL 236

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 22/149 (14%)

Query: 8   LASIKNQRGETTMHLLSTDG--DARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDV 65
             + +    E            DAR     G  N         S    LH AA +G ++V
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV---RHAKSGGTALHVAAAKGYTEV 214

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKD 120
           ++ L+    + +     +G T LH A    + +A + LV+     EA            +
Sbjct: 215 LKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV-----------N 262

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNR 149
           K G T   +A  + L  + EL  ++N   
Sbjct: 263 KVGQTAFDVADEDILGYLEELQKKQNLLH 291

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 32/165 (19%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIF---GEN-NRELCLEVDNSLMIPLHRAALEGDSDVI 66
           +K   G        + GD   V      G + N       +   +  LH+A ++ + D++
Sbjct: 36  VKFDDG-AVFLAACSSGDTEEVLRLLERGADIN-----YANVDGLTALHQACIDDNVDMV 89

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKDK 121
           + LV      + +  + G   LH A      D  + L+       A            + 
Sbjct: 90  KFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV-----------NS 137

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           EG+T L +A    ++++++  +           I    K+ +  +
Sbjct: 138 EGDTPLDIAEEEAMEELLQNEVNRQGV-----DIEAARKEEERIM 177

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 6/59 (10%)

Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
            D +      L      +  +E  + +                G   L  C++   + V
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKK------TKVKFDDGAVFLAACSSGDTEEV 56

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 69.0 bits (170), Expect = 9e-15
 Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 40/165 (24%)

Query: 15  RGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
               ++H L+  G+   +    E     N       D     PL  AA  G   V+  L+
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVIN-----HTDEEGFTPLMWAAAHGQIAVVEFLL 56

Query: 71  S----ICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKDK 121
                      + L    E+AL LA  K  +D  + L+D                   D 
Sbjct: 57  QNGADP-----QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY-----------DW 100

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
            G T L  A      + V++L+   ++             G  ++
Sbjct: 101 NGGTPLLYAVHGNHVKCVKMLLESGAD------PTIETDSGYNSM 139

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 26/142 (18%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
             ++ G T +   +  G   +V    +N           +       L  A  +G +D++
Sbjct: 31  HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-----LLGKGRESALSLACSKGYTDIV 85

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKDK 121
           + L+    + + +   NG T L  AV  +     + L++       +             
Sbjct: 86  KMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE-----------TD 133

Query: 122 EGNTVLHLATLNKLKQIVELLI 143
            G   + LA     + + +++ 
Sbjct: 134 SGYNSMDLAVALGYRSVQQVIE 155

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 38.5 bits (91), Expect = 6e-04
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
           +  +  E+ + L  + G   +V++  +     N     E D +   PL  A        +
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVN-----EYDWNGGTPLLYAVHGNHVKCV 118

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD 105
           + L+    +     T +G  ++ LAV        Q +  
Sbjct: 119 KMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIES 156

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 70.2 bits (173), Expect = 2e-14
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
               +   P   AA+ G   +++  +S   + + +    G TA   A    +  A + L 
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 105 D-----EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN 159
                   +   KE       K G T L  A      +++++L+ E         +N  +
Sbjct: 126 KRGANVNLRRKTKEDQER-LRKGGATALMDAAEKGHVEVLKILLDEMG-----ADVNACD 179

Query: 160 KQGQTALQLCNANSQDSVFKEI 181
             G+ AL     +S DS  + I
Sbjct: 180 NMGRNALIHALLSSDDSDVEAI 201

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 69.8 bits (172), Expect = 2e-14
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 14/115 (12%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHR 111
            L +A    D D+++ L+        +    G T LH AV+ SR D  + L+   A    
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 112 KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           +        K G T   LA +    ++++L + + ++      +N  +  G TA 
Sbjct: 68  R-------KKNGATPFLLAAIAGSVKLLKLFLSKGAD------VNECDFYGFTAF 109

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 69.8 bits (172), Expect = 3e-14
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 30/174 (17%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIF---------GENNRELCLEVDNSLMIPLHRAALEG 61
             +  G T     +  G  + ++               +E    +       L  AA +G
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

Query: 62  DSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTW--- 118
             +V++ L+      +    + G  AL  A+  S     +A+           L      
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT--------HLLLDHGAD 211

Query: 119 ---KDKEGNTVLHLATLNKLKQIVELLI-RENSNRRIMIRINTVNKQGQTALQL 168
              + + G T L LA   K   +V+ L+ +E+        IN  +  G+TAL L
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE------INDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.5 bits (153), Expect = 9e-12
 Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 23/166 (13%)

Query: 13  NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSI 72
                  +     + D  +V+   E    +  + +     PLH A      D++  L+  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKEGNTV 126
             +       NG T   LA         +        V+E             D  G T 
Sbjct: 62  GAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE------------CDFYGFTA 108

Query: 127 LHLATLNKLKQIVELLIRE----NSNRRIMIRINTVNKQGQTALQL 168
              A +    + ++ L +     N  R+       + K G TAL  
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 57.1 bits (139), Expect = 6e-10
 Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 16/106 (15%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESL-------EKLTSNGETALHLAVKKSRS 97
             DN     L  A L  D   + A+       L             G+T L LAV+K   
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAIT----HLLLDHGADVNVRGERGKTPLILAVEKKHL 232

Query: 98  DAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
              Q L+++      +      D +G T L LA   KLK+I ELL 
Sbjct: 233 GLVQRLLEQEHIEIND-----TDSDGKTALLLAVELKLKKIAELLC 273

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
                   PL  A  +    +++ L+      +    S+G+TAL LAV+       + L 
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 105 D 105
            
Sbjct: 274 K 274

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 67.4 bits (166), Expect = 2e-14
 Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 33/162 (20%)

Query: 16  GETTMHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSI 72
               +   +  G    VRI    G          D     PLH AA  G       L+  
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAP-----FTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKEGNTV 126
                 + T    T LH+A  +  ++  + L      V+             KD    T 
Sbjct: 57  GVSRDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNA------------KDMLKMTA 103

Query: 127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
           LH AT +  +++VELLI+  ++      ++T +K  +TA  +
Sbjct: 104 LHWATEHNHQEVVELLIKYGAD------VHTQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 54.3 bits (132), Expect = 1e-09
 Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 21/88 (23%)

Query: 83  NGETALHLAVKKSRSDAFQALV----DEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQI 138
           +    L  A +  + D  + L+                   D  G + LHLA        
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-----------TDWLGTSPLHLAAQYGHFST 49

Query: 139 VELLIRENSNRRIMIRINTVNKQGQTAL 166
            E+L+R   +       +   K  +T L
Sbjct: 50  TEVLLRAGVS------RDARTKVDRTPL 71

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.9 bits (131), Expect = 2e-09
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 24/139 (17%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGEN--NRELCLEVDNSLMIPLHRAALEGDSDVIRAL 69
            +  G + +HL +  G      +      +R+           PLH AA EG ++++  L
Sbjct: 30  TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD---ARTKVDRTPLHMAASEGHANIVEVL 86

Query: 70  VSICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKEG 123
           +    +   K      TALH A + +  +  + L      V              + K  
Sbjct: 87  LKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGADVHT------------QSKFC 133

Query: 124 NTVLHLATLNKLKQIVELL 142
            T   ++  N  + + E+L
Sbjct: 134 KTAFDISIDNGNEDLAEIL 152

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 70.3 bits (173), Expect = 2e-14
 Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 36/175 (20%)

Query: 9   ASIKNQRGETTMHLLSTDGDAR--MVRIFGEN----NRELCLEVDNSLMIPLHRAALEGD 62
           + +K+ +G+T +H     G     M++I  +             D +   PL RA    +
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT-----AKDKADETPLMRAMEFRN 185

Query: 63  SDVIRALVSICPES----LEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRK 112
            + +  ++   P      L+     G + LH A+  +  D           V+       
Sbjct: 186 REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM------ 239

Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQ 167
                 +D E    L+L+    +  + + L+       + +        G T L 
Sbjct: 240 ------EDNEHTVPLYLSVRAAMVLLTKELL---QKTDVFLIQACPYHNGTTVLP 285

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 19/175 (10%), Positives = 47/175 (26%), Gaps = 35/175 (20%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
             N++G + +H         +   F E     N       DN   +PL+ +       + 
Sbjct: 206 YANKQGNSHLHWAILINWEDVAMRFVEMGIDVN-----MEDNEHTVPLYLSVRAAMVLLT 260

Query: 67  RALVSICPESLEKLT------------SNGETALHLAVKKSRSDAFQALVDE-AKSHRKE 113
           + L+      L +                    +  A   S+ +  Q L ++  +  R  
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRS- 319

Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
                    G              +  + +  ++       + T ++    +  +
Sbjct: 320 ------LNTGAGGAVKRKKKAAPAVKRMKLAPSAP------VRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 33/141 (23%), Positives = 50/141 (35%), Gaps = 32/141 (22%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAF 100
           + D+  M  +H AA +G +D +R L+                 G TALHLA K    D  
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIETGVSP-----TIQNRFGCTALHLACKFGCVDTA 69

Query: 101 QALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI---------------RE 145
           + L     S  + H        G   +HLA +     +V  L+                 
Sbjct: 70  KYLA----SVGEVH----SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNEC 121

Query: 146 NSNRRIMIRINTVNKQGQTAL 166
           +      I  +  + +GQTAL
Sbjct: 122 DEREVNEIGSHVKHCKGQTAL 142

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 12/133 (9%), Positives = 35/133 (26%), Gaps = 21/133 (15%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRI------------FGENNRELCLEVDNSLMIPLHRAA 58
           +++      ++L        + +                +N    L      +  +  AA
Sbjct: 239 MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA 298

Query: 59  LEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFT 117
                +V++ L     E + +  + G        KK+     +  +   A    +     
Sbjct: 299 DPSKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTR----- 352

Query: 118 WKDKEGNTVLHLA 130
              +       ++
Sbjct: 353 --SRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL-CNANSQDSV 177
            D E    +H+A        V  LI    +          N+ G TAL L C     D+ 
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVS------PTIQNRFGCTALHLACKFGCVDTA 69

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 21/163 (12%)

Query: 8   LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIR 67
           + S     G     +   DG +               +V +    P   AA + D   + 
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA----ADVVSEYETPWWTAARKADEQALS 62

Query: 68  ALVS-ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNT 125
            L+     +++++   NG TAL            + L +  A    ++       + G T
Sbjct: 63  QLLEDRDVDAVDE---NGRTALLFVAGLGSDKCVRLLAEAGADLDHRD------MRGGLT 113

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
            LH+A      ++VE L+   ++      I   +++G TAL+L
Sbjct: 114 ALHMAAGYVRPEVVEALVELGAD------IEVEDERGLTALEL 150

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 32/197 (16%), Positives = 55/197 (27%), Gaps = 44/197 (22%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIF--GEN-NRELCLEVDNSLMIPLHRAALEGDSDVIRA 68
                ET     +   D + +       + +      VD +    L   A  G    +R 
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDRDVD-----AVDENGRTALLFVAGLGSDKCVRL 95

Query: 69  LVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKDKEG 123
           L     +   +    G TALH+A    R +  +ALV+     E +           D+ G
Sbjct: 96  LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-----------DERG 144

Query: 124 NTVLHLATLNKLKQIVELLI----------------RENSNRRIMIRINTVNKQGQTALQ 167
            T L LA            +                 +      +  I     +G+    
Sbjct: 145 LTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEY 204

Query: 168 LCNANSQDSVFKEIGWI 184
           L     +D    +  W+
Sbjct: 205 L--VRWKDG--GDCEWV 217

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 25/130 (19%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSD------------AF 100
            LH AA     +V+ ALV +  + +E     G TAL LA +  ++               
Sbjct: 114 ALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 172

Query: 101 QALVDEAKSHRKEHLFTW----KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRIN 156
           + +++  +    E+        K  +G  V +L           +     +         
Sbjct: 173 EKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE------DV 226

Query: 157 TVNKQGQTAL 166
              K  +  L
Sbjct: 227 A--KDYEDGL 234

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 66.6 bits (164), Expect = 3e-14
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 23/119 (19%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EA 107
           PLH AA  G  +V++ L+    + +     NG T LHLA +    +  + L++      A
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 108 KSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           K           DK G T LHLA  N   ++V+LL+   ++      +N  +K G+T L
Sbjct: 64  K-----------DKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPL 105

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 58.1 bits (142), Expect = 3e-11
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
             D +   PLH AA  G  +V++ L+    + +     NG T LHLA +    +  + L+
Sbjct: 30  AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL 88

Query: 105 D-----EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
           +      AK           DK G T LHLA  N   ++V+LL+
Sbjct: 89  EAGADVNAK-----------DKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 51.6 bits (125), Expect = 8e-09
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 22/89 (24%)

Query: 83  NGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQ 137
           NG T LHLA +    +  + L++      A           KDK G T LHLA  N   +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-----------KDKNGRTPLHLAARNGHLE 49

Query: 138 IVELLIRENSNRRIMIRINTVNKQGQTAL 166
           +V+LL+   ++      +N  +K G+T L
Sbjct: 50  VVKLLLEAGAD------VNAKDKNGRTPL 72

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 37.3 bits (88), Expect = 8e-04
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
             D +   PLH AA  G  +V++ L+    + +     NG T LHLA +    +  + L+
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL 121

Query: 105 D 105
           +
Sbjct: 122 E 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 22/180 (12%)

Query: 9   ASIK-NQRGETTMHLLSTDGDARMVRIF---GEN-NRELCLEVDNSLMIPLHRAALEGDS 63
             +K N      +   S +G+  +V+      ++ +       ++  +  LH A   G +
Sbjct: 29  MRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-----LPNDEGITALHNAVCAGHT 83

Query: 64  DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKE 122
           ++++ LV      +    S+G T LH A   +     + LV+  A         T+ D +
Sbjct: 84  EIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM----TYSDMQ 138

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIG 182
                         Q  + L            +  +NK    AL      + D +  + G
Sbjct: 139 TAADKCEEMEEGYTQCSQFLYGVQEK------MGIMNKGVIYALWDYEPQNDDELPMKEG 192

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 28/172 (16%)

Query: 16  GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE 75
           G+ ++         +       +   +  + +   +  L  ++LEG+ D+++ ++    +
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 76  SLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKDKEGNTVLHLA 130
                   G TALH AV    ++  + LV       A            D +G T LH A
Sbjct: 63  -PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA-----------DSDGWTPLHCA 110

Query: 131 TLNKLKQIVELLIRENSNRRIMIRINTVNKQ-GQTALQLCNANSQDSVFKEI 181
                 Q+ + L+   +       +  +     QTA   C    +     + 
Sbjct: 111 ASCNNVQVCKFLVESGAA------VFAMTYSDMQTAADKCEEMEEGY--TQC 154

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 63.0 bits (154), Expect = 4e-12
 Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 16/121 (13%)

Query: 47  DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
           + +  + L               ++       K        L  +  +   D  Q ++ E
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 107 -AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTA 165
                         + EG T LH A      +IV+ L++   N      +N  +  G T 
Sbjct: 60  VDDPSL-------PNDEGITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGWTP 106

Query: 166 L 166
           L
Sbjct: 107 L 107

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 67.8 bits (167), Expect = 6e-14
 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 14/125 (11%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
            +D+     + +A   G  +  R LV    + + +      T LH A   +R D  +  +
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 105 DE-AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQ 163
            + A   +            +T LH AT      +V  L++  ++       + ++ +G 
Sbjct: 63  SKGAIVDQLG------GDLNSTPLHWATRQGHLSMVVQLMKYGAD------PSLIDGEGC 110

Query: 164 TALQL 168
           + + L
Sbjct: 111 SCIHL 115

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 65.1 bits (160), Expect = 7e-13
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 23/130 (17%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS-DAFQAL 103
            +D      +H AA  G + ++  L++   + ++ +  NG T L  A  ++ S D  + L
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLL 162

Query: 104 VD-----EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV 158
           +                        NT LH A L     ++ LL+   +N      ++  
Sbjct: 163 LTFNVSVNLGD----------KYHKNTALHWAVLAGNTTVISLLLEAGAN------VDAQ 206

Query: 159 NKQGQTALQL 168
           N +G++AL L
Sbjct: 207 NIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 16/144 (11%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIF---GEN-NRELCLEVDNSLMIPLHRAALEGDS-DV 65
           + +  G + +HL +  G   +V      G++ +      +D + M PL  AA    S D 
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-----MMDQNGMTPLMWAAYRTHSVDP 158

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNT 125
            R L++           +  TALH AV    +     L+ EA ++        ++ +G +
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL-EAGANVDA-----QNIKGES 212

Query: 126 VLHLATLNKLKQIVELLIRENSNR 149
            L LA   K   ++  L      +
Sbjct: 213 ALDLAKQRKNVWMINHLQEARQAK 236

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 65.1 bits (160), Expect = 7e-14
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 31/123 (25%)

Query: 53  PLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQALVD--- 105
           PLH AA  G ++ ++ L+S    +        + +G T LHLA K   ++  + L+    
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADV-----NARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66

Query: 106 --EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQ 163
              A+            K+GNT  HLA  N   +IV+LL  + ++      +N  +    
Sbjct: 67  DVNAR-----------SKDGNTPEHLAKKNGHHEIVKLLDAKGAD------VNARSWGSS 109

Query: 164 TAL 166
              
Sbjct: 110 HHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 42.8 bits (102), Expect = 8e-06
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 118 WKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           W  K+GNT LH A  N   + V+ L+ + ++      +N  +K G T L
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------VNARSKDGNTPL 46

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 65.8 bits (162), Expect = 1e-13
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 23/129 (17%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
             D S   PLH AA  G  +++  L+    + +  +   G T L LA      +  + L+
Sbjct: 42  AEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLL 100

Query: 105 D-----EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN 159
                  A            D EG+T LHLA +    +IVE+L++  ++      +N  +
Sbjct: 101 KNGADVNAN-----------DMEGHTPLHLAAMFGHLEIVEVLLKNGAD------VNAQD 143

Query: 160 KQGQTALQL 168
           K G+TA  +
Sbjct: 144 KFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 65.8 bits (162), Expect = 1e-13
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 33/126 (26%)

Query: 53  PLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQAL----- 103
            L  AA  G  D +R L++    +         ++G T LHLA      +  + L     
Sbjct: 17  KLLEAARAGRDDEVRILMANGADV-----NAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71

Query: 104 -VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQG 162
            V+              D  G T L LA L    +IVE+L++  ++      +N  + +G
Sbjct: 72  DVNA------------VDHAGMTPLRLAALFGHLEIVEVLLKNGAD------VNANDMEG 113

Query: 163 QTALQL 168
            T L L
Sbjct: 114 HTPLHL 119

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 58.5 bits (143), Expect = 6e-11
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 17/107 (15%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
            VD++ M PL  AAL G  +++  L+    + +      G T LHLA      +  + L+
Sbjct: 75  AVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLL 133

Query: 105 D-----EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN 146
                  A+           DK G T   ++  N  + + E+L + N
Sbjct: 134 KNGADVNAQ-----------DKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 53.1 bits (129), Expect = 5e-09
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 24/91 (26%)

Query: 82  SNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKL 135
           S+    L  A +  R D  + L      V+             +D  G T LHLA  N  
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNA------------EDASGWTPLHLAAFNGH 59

Query: 136 KQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
            +IVE+L++  ++      +N V+  G T L
Sbjct: 60  LEIVEVLLKNGAD------VNAVDHAGMTPL 84

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 41.2 bits (98), Expect = 7e-05
 Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 6/48 (12%)

Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
              +    L  A        V +L+   ++      +N  +  G T L
Sbjct: 10  HGSDLGKKLLEAARAGRDDEVRILMANGAD------VNAEDASGWTPL 51

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 64.7 bits (159), Expect = 1e-13
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 25/122 (20%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDE 106
            L  AA  G  D +R L++   +   K    G T L+LA      +  + L      V+ 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75

Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
                        D  G T LHLA      +I E+L++  ++      +N  +K G+TA 
Sbjct: 76  ------------VDAIGFTPLHLAAFIGHLEIAEVLLKHGAD------VNAQDKFGKTAF 117

Query: 167 QL 168
            +
Sbjct: 118 DI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 55.5 bits (135), Expect = 4e-10
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 19/108 (17%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQAL- 103
             D   + PL+ A   G  +++  L+    +      + G T LHLA      +  + L 
Sbjct: 42  AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIAEVLL 100

Query: 104 -----VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN 146
                V+             +DK G T   ++  N  + + E+L + N
Sbjct: 101 KHGADVNA------------QDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.8 bits (128), Expect = 3e-09
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 24/98 (24%)

Query: 75  ESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKEGNTVLH 128
                  S+    L  A +  + D  + L      V+             KD+ G T L+
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNA------------KDEYGLTPLY 52

Query: 129 LATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           LAT +   +IVE+L++  ++      +N V+  G T L
Sbjct: 53  LATAHGHLEIVEVLLKNGAD------VNAVDAIGFTPL 84

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 64.8 bits (159), Expect = 2e-13
 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 18/142 (12%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVIR 67
            N RGET +H+ S  GD   V    +N    N       D++   PLH A   G   V+ 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-----VKDHAGWTPLHEACNHGHLKVVE 60

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTV 126
            L+      +       ++ LH A K    D  + L+   A  +         +  G   
Sbjct: 61  LLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV-------NIFGLRP 112

Query: 127 LHLATLNKLKQIVELLIRENSN 148
           +       +K ++ L  +  S+
Sbjct: 113 VDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 64.0 bits (157), Expect = 3e-13
 Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 31/123 (25%)

Query: 53  PLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQALVD--- 105
            LH A+++GD   +  L+                 G T LH A         + L+    
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDP-----NVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67

Query: 106 --EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQ 163
                             + ++ LH A  N    IV+LL+   ++       N VN  G 
Sbjct: 68  LVNTT-----------GYQNDSPLHDAAKNGHVDIVKLLLSYGAS------RNAVNIFGL 110

Query: 164 TAL 166
             +
Sbjct: 111 RPV 113

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 31/186 (16%)

Query: 8   LASIKNQRG--ETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDV 65
            A +    G  +T   LL     A       E       +V       LH A        
Sbjct: 52  KALLNLSAGRNDTIPILLDI---AEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY 108

Query: 66  IRALVS-------------ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
           +  LV                P+        GE  L LA   ++      L +    H++
Sbjct: 109 VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE--NGHKQ 166

Query: 113 EHLFTWKDKEGNTVLHLA---------TLNKLKQIVELLIRENSNRRIMIRINTV-NKQG 162
             L   +D  GNTVLH               + ++ +LL+ + +       +  + N  G
Sbjct: 167 ADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225

Query: 163 QTALQL 168
            + L +
Sbjct: 226 LSPLMM 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 63.3 bits (154), Expect = 4e-12
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 24/145 (16%)

Query: 53  PLHRAAL---EGDSDVIRALVSICPESLEKLT----------SNGETALHLAVKKSRSDA 99
            L +A L    G +D I  L+ I  ++                 G+TALH+A+++     
Sbjct: 49  CLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY 108

Query: 100 FQALVD-----EAK---SHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
            + LV+      A+      +          G   L LA       IV  L     N   
Sbjct: 109 VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT---ENGHK 165

Query: 152 MIRINTVNKQGQTALQLCNANSQDS 176
              +   + +G T L    A + ++
Sbjct: 166 QADLRRQDSRGNTVLHALVAIADNT 190

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 25/158 (15%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGEN---------NRELCLEVDNSLMI----PLHRAA 58
              RG+T +H+         V +  E           R    + +         PL  AA
Sbjct: 89  VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA 148

Query: 59  LEGDSDVIRALVS--ICPESLEKLTSNGETALHLAV---------KKSRSDAFQALVDE- 106
                 ++  L         L +  S G T LH  V          K  +  +  L+ + 
Sbjct: 149 CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208

Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
           AK     +L    + +G + L +A       I + +IR
Sbjct: 209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 60.6 bits (147), Expect = 4e-11
 Identities = 31/149 (20%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 53  PLHRAALEGDSDVIRALVSI-------CPESLEKLTSNGETALHLAV---KKSRSDAFQA 102
            L      G  D +  L+S          +   +  S G+T L  A+      R+D    
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 103 LVDEAKSHRKEHLF-----TWKDKEGNTVLHLATLNKLKQIVELLI--------RENSNR 149
           L+D A+       F           G T LH+A   + K  VELL+        +     
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127

Query: 150 RIMIRINTVNKQGQTALQL-CNANSQDSV 177
                       G+  L L    N    V
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIV 156

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 66.8 bits (164), Expect = 3e-13
 Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 22/162 (13%)

Query: 9   ASIKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSD 64
           A       E  +H  +T  D ++V+I   +    +     + D+     L+ A   G+  
Sbjct: 55  ALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDS-----QFDDKGNTALYYAVDSGNMQ 109

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGN 124
            ++  V      +    +  +T+ + AV  +        + E  S               
Sbjct: 110 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-------LAILL 162

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           + +H+   N    ++ LL+   ++       NT N       
Sbjct: 163 SCIHITIKNGHVDMMILLLDYMTS------TNTNNSLLFIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 19/136 (13%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
           + D       + A  + +  ++  L++             E  LH A     +   + L+
Sbjct: 26  KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILL 82

Query: 105 DE-AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQG- 162
                  +        D +GNT L+ A  +   Q V+L +++N        +    K G 
Sbjct: 83  FSGLDDSQF-------DDKGNTALYYAVDSGNMQTVKLFVKKNWR------LMFYGKTGW 129

Query: 163 QTALQL-CNANSQDSV 177
           +T+       N    V
Sbjct: 130 KTSFYHAVMLNDVSIV 145

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 20/161 (12%), Positives = 42/161 (26%), Gaps = 30/161 (18%)

Query: 11  IKNQRGETT-MHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGDSDVI 66
              + G  T  +      D  +V  F     +           L+  +H     G  D++
Sbjct: 123 FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-----FDLAILLSCIHITIKNGHVDMM 177

Query: 67  RALVSICPESLEKLTSNGET-ALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNT 125
             L+           S      + LA+     +  QAL                D    +
Sbjct: 178 ILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFK-------------YDINIYS 223

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
                 L    +I +++I ++          + +      +
Sbjct: 224 ANLENVLLDDAEIAKMIIEKHVE------YKSDSYTKDLDI 258

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 62.8 bits (154), Expect = 6e-13
 Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 31/125 (24%)

Query: 53  PLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQALVD--- 105
               A   GD D ++  V+    +      +    G   LH A    + +  + L+    
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDV-----NRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 106 --EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQ 163
              A            DK   T L  A        V+LL+ + ++             G 
Sbjct: 65  DINAP-----------DKHHITPLLSAVYEGHVSCVKLLLSKGAD------KTVKGPDGL 107

Query: 164 TALQL 168
           TA + 
Sbjct: 108 TAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.9 bits (131), Expect = 1e-09
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 18/130 (13%)

Query: 16  GETTMHLLSTDGDARMVRIF---GEN-NRELCLEVDNSLMIPLHRAALEGDSDVIRALVS 71
            +        +GD   V+ +   GE+ N             PLH AA  G  +++  L+ 
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVN-----RTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHLA 130
              + +     +  T L  AV +      + L+ + A    K         +G T     
Sbjct: 62  KGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-------GPDGLTAFEAT 113

Query: 131 TLNKLKQIVE 140
               +K +++
Sbjct: 114 DNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.8 bits (128), Expect = 3e-09
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 22/90 (24%)

Query: 82  SNGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKDKEGNTVLHLATLNKLK 136
           S  +     A+K    D  +  V                     + G   LH A      
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNR-----------TLEGGRKPLHYAADCGQL 53

Query: 137 QIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           +I+E L+ + ++      IN  +K   T L
Sbjct: 54  EILEFLLLKGAD------INAPDKHHITPL 77

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 65.6 bits (160), Expect = 8e-13
 Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 31/186 (16%)

Query: 8   LASIKNQRG--ETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDV 65
            A +    G  +T   LL        ++ F   +     +        LH A    +  +
Sbjct: 60  KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS---YTDSYYKGQTALHIAIERRNMTL 116

Query: 66  IRALVS-------------ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
           +  LV                          GE  L LA   ++    + L+  +     
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176

Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIR----------INTVNKQG 162
               + +D  GNTVLH         +       +    I+I               N++G
Sbjct: 177 ---ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG 233

Query: 163 QTALQL 168
            T L L
Sbjct: 234 LTPLAL 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 24/180 (13%), Positives = 52/180 (28%), Gaps = 38/180 (21%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIF-------------GENNRELCLEVDNSLMIPLHRAA 58
              +G+T +H+     +  +V +                  +           +PL  AA
Sbjct: 97  SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA 156

Query: 59  LEGDSDVIRALVS--ICPESLEKLTSNGETALHLAVK---------KSRSDAFQALVDEA 107
                 +++ L+     P  +    S G T LH  V+         K  +  +  ++   
Sbjct: 157 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG 216

Query: 108 KS-HRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
              H    L    +++G T L LA  +    ++  +++                      
Sbjct: 217 AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-------------EIHEPECR 263

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 60.2 bits (146), Expect = 5e-11
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 23/150 (15%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLT-------SNGETALHLAVKKSRS---DAFQA 102
            +  A  + +   + +L+     S ++LT         G+T L  A+    +   D    
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 103 LVDE-AKSHRKEHL----FTWKDKEGNTVLHLATLNKLKQIVELLI--------RENSNR 149
           L+D   K+   +      +T    +G T LH+A   +   +V LL+          N + 
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 150 RIMIRINTVNKQGQTALQLCNANSQDSVFK 179
               +       G+  L L    +Q ++ K
Sbjct: 136 FKKTKGRPGFYFGELPLSLAACTNQLAIVK 165

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 19/142 (13%), Positives = 36/142 (25%), Gaps = 30/142 (21%)

Query: 9   ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCL--EVDNSLMIPLHRAALEGDSDVI 66
                  GE  + L +      +V+   +N+ +       D+     LH      D+ V 
Sbjct: 141 GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD 200

Query: 67  R---------------ALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHR 111
                           A +    +  E     G T L LA    +      ++       
Sbjct: 201 NTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ------ 254

Query: 112 KEHLFTWKDKEGNTVLHLATLN 133
                  ++       H A  +
Sbjct: 255 -------REIHEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 84  GETALHLAVKKSRSDAFQALVDEAKSHRKEH--LFTWKDKEGNTVLHLATLN---KLKQI 138
              ++  AV +S     ++L+   +  +K          + G T L  A LN        
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 139 VELLIR-----ENSNRRIMIRINTVNKQGQTAL 166
           + LL+      ++  + +         +GQTAL
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTAL 105

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.6 bits (158), Expect = 8e-13
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 16/126 (12%)

Query: 51  MIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKS 109
           ++ L  AAL G+ +V++  V    +   +    G TALH A+  +       L+   A  
Sbjct: 22  LVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANV 80

Query: 110 HRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KQGQTALQL 168
           +         D  G T LH A       I   L++  +       I       G TA + 
Sbjct: 81  NSP-------DSHGWTPLHCAASCNDTVICMALVQHGAA------IFATTLSDGATAFEK 127

Query: 169 CNANSQ 174
           C+   +
Sbjct: 128 CDPYRE 133

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 24/145 (16%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
           + +   +  LH A    +  ++  L++     +    S+G T LH A   + +    ALV
Sbjct: 49  QPNEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALV 107

Query: 105 D-----EAKSHRKEHLFTWKDKEGNTVLHLATLNK--LKQIVELLIRENSNRRIMIRINT 157
                  A +            +G T        +         L     +      +  
Sbjct: 108 QHGAAIFATT----------LSDGATAFEKCDPYREGYADCATYLADVEQS------MGL 151

Query: 158 VNKQGQTALQLCNANSQDSVFKEIG 182
           +N     AL   +A   D +    G
Sbjct: 152 MNSGAVYALWDYSAEFGDELSFREG 176

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 34/161 (21%), Positives = 47/161 (29%), Gaps = 37/161 (22%)

Query: 12  KNQRGETTMHLLSTDGDARMVRI---FGEN-NRELCLEVDNSLMIPLHRAALEGDSDVIR 67
            N+ G T +H      +  +V      G N N       D+    PLH AA   D+ +  
Sbjct: 50  PNEEGITALHNAICGANYSIVDFLITAGANVN-----SPDSHGWTPLHCAASCNDTVICM 104

Query: 68  ALVSICPESLEKLTSNGETALHLA--------------------VKKSRSDAFQALVDEA 107
           ALV           S+G TA                        +    S A  AL D +
Sbjct: 105 ALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS 164

Query: 108 KSHRKEHLF--------TWKDKEGNTVLHLATLNKLKQIVE 140
                E  F          +D    T    A L+  +  V 
Sbjct: 165 AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 47.6 bits (114), Expect = 8e-07
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 14/85 (16%)

Query: 83  NGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVEL 141
           N    L  A      +  Q  V E     +        ++EG T LH A       IV+ 
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEMNDPSQ-------PNEEGITALHNAICGANYSIVDF 72

Query: 142 LIRENSNRRIMIRINTVNKQGQTAL 166
           LI   +N      +N+ +  G T L
Sbjct: 73  LITAGAN------VNSPDSHGWTPL 91

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 62.0 bits (152), Expect = 3e-12
 Identities = 32/164 (19%), Positives = 51/164 (31%), Gaps = 34/164 (20%)

Query: 15  RGETTMHLLSTDGDARMVRIF---GEN-NRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
                +   +  GD   +        N N       +      L      G+ ++ R L+
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVN-----AQNGFGRTALQVMK-LGNPEIARRLL 57

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKEGN 124
                   K    G   +H A +    D  Q L      V+             +D EGN
Sbjct: 58  LRGANPDLK-DRTGFAVIHDAARAGFLDTLQTLLEFQADVNI------------EDNEGN 104

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
             LHLA      ++VE L++  +       +   N +G TA  L
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTA-----SNVGHRNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 60.9 bits (149), Expect = 7e-12
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
             D +    +H AA  G  D ++ L+    + +    + G   LHLA K+      + LV
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLV 123

Query: 105 DEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
            +  +    H    ++ +G+T   LA L    ++V L+ 
Sbjct: 124 -KHTASNVGH----RNHKGDTACDLARLYGRNEVVSLMQ 157

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 51.6 bits (125), Expect = 1e-08
 Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 25/93 (26%)

Query: 80  LTSNGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKEGNTVLHLATLN 133
           +       L  A  +   +   +L      V+             ++  G T L +  L 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNA------------QNGFGRTALQVMKLG 48

Query: 134 KLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
              +I   L+   +N       +  ++ G   +
Sbjct: 49  N-PEIARRLLLRGAN------PDLKDRTGFAVI 74

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 18/61 (29%), Positives = 26/61 (42%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
             DN   +PLH AA EG   V+  LV     ++      G+TA  LA    R++    + 
Sbjct: 98  IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

Query: 105 D 105
            
Sbjct: 158 A 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.6 bits (99), Expect = 4e-05
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
                L  A      + +  L++ N N      +N  N  G+TALQ+    + +  
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVN------VNAQNGFGRTALQVMKLGNPEIA 53

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.9 bits (155), Expect = 4e-12
 Identities = 25/172 (14%), Positives = 51/172 (29%), Gaps = 22/172 (12%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGE---NNRELCLEVDNSLMIPLHRAAL----EGDS 63
             +  GE+ +       +      F           +  D+     LH   +     G S
Sbjct: 159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 218

Query: 64  DVIRALVSICPESLEK-------LTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLF 116
              +  + I    + K         +N + +        R D+    +D        ++ 
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII--ANML 276

Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
             +D  G+T L++A       IV+ L+   ++          NK G   +  
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGAD------PFIANKSGLRPVDF 322

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 14/140 (10%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
           E    L   L R       ++  +L +       +  S+ +   H++      +   A  
Sbjct: 58  EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF- 116

Query: 105 DEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQT 164
                + + +L    D+ GNT LH  T     ++V+ L++  SN          +  G++
Sbjct: 117 ----PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN------RLYGDNMGES 166

Query: 165 ALQ---LCNANSQDSVFKEI 181
            L        N     F+ +
Sbjct: 167 CLVKAVKSVNNYDSGTFEAL 186

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 21/139 (15%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAF 100
             D      LH A   G ++++  L+     +           G + LH+A      +  
Sbjct: 35  RTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-----NDKDDAGWSPLHIAASAGXDEIV 89

Query: 101 QALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
           +AL+ +             ++ G T LH A      +I  +L+   +N       +  + 
Sbjct: 90  KALLVKGAHVNA------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDH 137

Query: 161 QGQTALQLCNANSQDSVFK 179
              TA+    A     +  
Sbjct: 138 YDATAMHRAAAKGNLKMVH 156

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.0 bits (135), Expect = 9e-10
 Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 25/133 (18%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQAL------VDE 106
             + A      ++   +++       +   +  TALH A     ++  + L      V++
Sbjct: 10  ICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
                       KD  G + LH+A      +IV+ L+ + ++      +N VN+ G T L
Sbjct: 69  ------------KDDAGWSPLHIAASAGXDEIVKALLVKGAH------VNAVNQNGCTPL 110

Query: 167 QLCNANSQDSVFK 179
               + ++  +  
Sbjct: 111 HYAASKNRHEIAV 123

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVS 71
            NQ G T +H  ++     +  +  E         D+     +HRAA +G+  ++  L+ 
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLF 160

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLAT 131
                     + G T LHLA  + R +  + LV +  S         ++KE  T L +A 
Sbjct: 161 YKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS------IYIENKEEKTPLQVAK 213

Query: 132 LNKLKQIVELLI 143
                 ++   +
Sbjct: 214 GG--LGLILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 24/90 (26%)

Query: 83  NGETALHLAVKKSRSDAFQAL------VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLK 136
           +     +LA      +  + +                      D++  T LH A      
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATR------------TDQDSRTALHWACSAGHT 53

Query: 137 QIVELLIRENSNRRIMIRINTVNKQGQTAL 166
           +IVE L++          +N  +  G + L
Sbjct: 54  EIVEFLLQLGVP------VNDKDDAGWSPL 77

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 57.1 bits (139), Expect = 9e-11
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 25/130 (19%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAF 100
            +  S    L  AA  G  + +R L+             L   G   + + +  S +   
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADP-----NALNRFGRRPIQVMMMGS-AQVA 60

Query: 101 QALVDE-AKSHRKEHLFTWKDKEGNTV-LHLATLNKLKQIVELLIRENSNRRIMIRINTV 158
           + L+   A+ +         D    T  +H A        + +L R  +       ++  
Sbjct: 61  ELLLLHGAEPNCA-------DPATLTRPVHDAAREGFLDTLVVLHRAGAR------LDVC 107

Query: 159 NKQGQTALQL 168
           +  G+  + L
Sbjct: 108 DAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 20/139 (14%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSDVI 66
           +     +  +   +  G    VR   E     N      ++     P+      G + V 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADPN-----ALNRFGRRPIQVMM-MGSAQVA 60

Query: 67  RALVSICPESLEKLTSNGET-ALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGN 124
             L+    E          T  +H A ++   D    L    A+           D  G 
Sbjct: 61  ELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC-------DAWGR 112

Query: 125 TVLHLATLNKLKQIVELLI 143
             + LA     + I   L 
Sbjct: 113 LPVDLAEEQGHRDIARYLH 131

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 15/89 (16%)

Query: 78  EKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHLATLNKLK 136
             L  + +  L  A  + + +  + L++  A  +         ++ G   + +  +    
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA-------LNRFGRRPIQVMMMGSA- 57

Query: 137 QIVELLIRENSNRRIMIRINTVNKQGQTA 165
           Q+ ELL+   +        N  +    T 
Sbjct: 58  QVAELLLLHGAE------PNCADPATLTR 80

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
                +  L  A      + V  L+   ++       N +N+ G+  +Q+    S    
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGAD------PNALNRFGRRPIQVMMMGSAQVA 60

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD 105
           P+H AA EG  D +  L       L+   + G   + LA ++   D  + L  
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHA 132

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 32/138 (23%)

Query: 47  DNSLMIPLHRAALEGDSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQA 102
            N L   L     E    +   L++    I     +  T  G T      +   +D    
Sbjct: 39  SNILYDVLRNNNDEARYKISMFLINKGADI-----KSRTKEGTTLFFPLFQGGGNDITGT 93

Query: 103 LVDEAKSHRKEHL------FTWKDKEGNTVLHLATLN------KLKQIVELLIRENSNRR 150
                     +         T   K    V+     N      ++  + +L+  ++    
Sbjct: 94  T------ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG--- 144

Query: 151 IMIRINTVNKQGQTALQL 168
             +++   +K G TAL+ 
Sbjct: 145 --LQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 14/153 (9%), Positives = 34/153 (22%), Gaps = 24/153 (15%)

Query: 9   ASIKNQRGETTMHLL-----STDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDS 63
              K    ++ +        + +   ++         ++                  G +
Sbjct: 30  YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFFPLFQGGGN 88

Query: 64  DVIRALVSICPESLEKL----------TSNGETALHLAVKKSRSDA--FQALVDEAKSHR 111
           D+         E  +                +  +   +     D      L     S  
Sbjct: 89  DITGTT-----ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS 143

Query: 112 KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
              L   KDK G T L      +    ++++  
Sbjct: 144 GLQL-LIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 14/129 (10%), Positives = 40/129 (31%), Gaps = 34/129 (26%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD------- 105
            +  AA+ G  +    L     E  +K +      L+  ++ +  +A   +         
Sbjct: 9   TVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 106 --EAKSHRKEHLFTWKDKEGNTVLHLATLN------KLKQIVELLIRENSNRRIMIRINT 157
             ++           + KEG T+                ++ ++ + + ++      I  
Sbjct: 67  DIKS-----------RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD------ITA 109

Query: 158 VNKQGQTAL 166
           + K  +  +
Sbjct: 110 LYKPYKIVV 118

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 13/99 (13%), Positives = 28/99 (28%), Gaps = 9/99 (9%)

Query: 83  NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
           +    +  A      + F  L ++    ++      K      VL         +I   L
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESV---LKSNILYDVLRNNNDEARYKISMFL 61

Query: 143 IRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEI 181
           I + ++      I +  K+G T          + +    
Sbjct: 62  INKGAD------IKSRTKEGTTLFFPLFQGGGNDITGTT 94

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 53.5 bits (130), Expect = 8e-10
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 17/96 (17%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EA 107
           PLH AA  G  +V++ L+    + +     NG T LHLA +    +  + L++      A
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 108 KSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
           K           DK G T LHLA  N   ++V+LL+
Sbjct: 64  K-----------DKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.4 bits (127), Expect = 2e-09
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 22/89 (24%)

Query: 83  NGETALHLAVKKSRSDAFQALVD-----EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQ 137
           NG T LHLA +    +  + L++      AK           DK G T LHLA  N   +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-----------DKNGRTPLHLAARNGHLE 49

Query: 138 IVELLIRENSNRRIMIRINTVNKQGQTAL 166
           +V+LL+   ++      +N  +K G+T L
Sbjct: 50  VVKLLLEAGAD------VNAKDKNGRTPL 72

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 39.3 bits (93), Expect = 9e-05
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
             D +   PLH AA  G  +V++ L+    + +     NG T LHLA +    +  + L+
Sbjct: 30  AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL 88

Query: 105 D 105
           +
Sbjct: 89  E 89

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 54.0 bits (131), Expect = 2e-09
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 17/118 (14%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHR 111
            L  AA  G  + +RAL+     +     S G   + + +  S +   + L+   A+ + 
Sbjct: 15  WLATAAARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNC 72

Query: 112 KEHLFTWKDKEGNTV-LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
                   D    T  +H A        + +L R  +       ++  +  G+  + L
Sbjct: 73  A-------DPATLTRPVHDAAREGFLDTLVVLHRAGAR------LDVRDAWGRLPVDL 117

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 23/169 (13%), Positives = 40/169 (23%), Gaps = 34/169 (20%)

Query: 9   ASIKNQRGETTMHLLSTDGDARMVRIFGEN----NRELCLEVDNSLMIPLHRAALEGDSD 64
           A    +     +   +  G    VR   E     N       ++    P+      G + 
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPN-----APNSYGRRPIQVMM-MGSAR 58

Query: 65  VIRALVS----ICPESLEKLTSNGET-ALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTW 118
           V   L+                   T  +H A ++   D    L    A+   +      
Sbjct: 59  VAELLLLHGAEP-----NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR------ 107

Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQ 167
            D  G   + LA     + +   L                N     A +
Sbjct: 108 -DAWGRLPVDLAEELGHRDVARYLRAAAGG------TRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 46.3 bits (111), Expect = 9e-07
 Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 14/89 (15%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHR 111
           P+H AA EG  D +  L       L+   + G   + LA +    D  + L         
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAG---- 135

Query: 112 KEHLFTWKDKEGNTVLHLATLNKLKQIVE 140
                      G+    +        I +
Sbjct: 136 --------GTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
             +     L  A      + V  L+   +N       N  N  G+  +Q+
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEAGAN------PNAPNSYGRRPIQV 51

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 26/128 (20%)

Query: 57  AALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHR 111
            +          LV         + S+    L  A +  + D  + L+       AK   
Sbjct: 1   GSSHHHHHHSSGLVPRGSH----MGSDLGKKLLEAARAGQDDEVRILMANGADVAAK--- 53

Query: 112 KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNA 171
                   DK G+T LHLA  N   ++V+LL+   ++      +   +K G+TA  +   
Sbjct: 54  --------DKNGSTPLHLAARNGHLEVVKLLLEAGAD------VXAQDKFGKTAFDISID 99

Query: 172 NSQDSVFK 179
           N  + + +
Sbjct: 100 NGNEDLAE 107

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 16/127 (12%)

Query: 81  TSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVE 140
               ETALHLAV+     +   +VD    +        +  +G+T LH   L    + ++
Sbjct: 166 HEPDETALHLAVRSVDRTSLH-IVDFLVQNSGN--LDKQTGKGSTALHYCCLTDNAECLK 222

Query: 141 LLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAG 200
           LL+R  ++      I   N+ G+T L +          +    ++ +A    S +     
Sbjct: 223 LLLRGKAS------IEIANESGETPLDIAKRLKH----EHCEELLTQA---LSGRFNSHV 269

Query: 201 SANVSWN 207
                W 
Sbjct: 270 HVEYEWR 276

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 53  PLHRAALEGDSDVIRALVSIC--PESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSH 110
            LH A    D   +  +  +     +L+K T  G TALH       ++  + L+      
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL------ 225

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRR 150
           R +      ++ G T L +A   K +   ELL +  S R 
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATL 132
            P       +  E  LHLAVK +   +   LVD    +        K  +GNT LH A L
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLP-LVDFIIQNGGH--LDAKAADGNTALHYAAL 235

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
                 ++LL++  +       + TVN+ G+TAL +
Sbjct: 236 YNQPDCLKLLLKGRAL------VGTVNEAGETALDI 265

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 53  PLHRAALEGD--SDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSH 110
            LH A    +  S  +   +      L+   ++G TALH A   ++ D  + L+      
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL------ 246

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
           +   L    ++ G T L +A     K+  ELL +  + 
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 20/173 (11%), Positives = 42/173 (24%), Gaps = 22/173 (12%)

Query: 6   PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELC--------LEVDNSLMIPLHRA 57
            + A++          LL          I      E          +     +      +
Sbjct: 202 FRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLS 261

Query: 58  ALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHL-- 115
             +G  D++     +           G   L   ++++       +         + L  
Sbjct: 262 NPDGVFDLVTKSECL----------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 311

Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN--KQGQTAL 166
                 + N +L LA     +    LL+   S   +    N       G+  L
Sbjct: 312 TATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDL 364

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 12/121 (9%)

Query: 52  IPLHRAALEGDS---DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAK 108
           +    AA+ G S   D +  L++   E ++ + +    A  LA +         L     
Sbjct: 94  VICFVAAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAAENGHLHVLNRLC---- 148

Query: 109 SHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
                 +      E      LA  N    ++  L               +  +   A + 
Sbjct: 149 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT----EATAMIQAENYYAFRW 204

Query: 169 C 169
            
Sbjct: 205 A 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 16/160 (10%), Positives = 37/160 (23%), Gaps = 44/160 (27%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEK-LTSNGETALHLA-------------------V 92
               AA  G   V+  L  + P      + +    A   A                   +
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225

Query: 93  KKSRSDAFQALVDEAKSHRKEHLFTWKD----------------------KEGNTVLHLA 130
             +    F+            H+   K+                       +G  +L   
Sbjct: 226 AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNL 285

Query: 131 TLNKLKQIVELL--IRENSNRRIMIRINTVNKQGQTALQL 168
                + +++ +  +      + +    T+       L+L
Sbjct: 286 IRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 8/99 (8%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEK-LTSNGETALHLAVKKSRSDAFQALVDEAKSHR 111
               AA  G   V+  L  + P  +   + +    A  LA +         L        
Sbjct: 131 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC----ELA 186

Query: 112 KEHLFTWKDKEGNTVLHLATLNK--LKQIVELLIRENSN 148
                     E       A + +     ++  L+     
Sbjct: 187 PTEATAMIQAENYYAFRWAAVGRGHH-NVINFLLDCPVM 224

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 28/135 (20%)

Query: 54  LHRAALEGD-SDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAK 108
           L  A    D   V+ A  +      P       +  E  LHLAVK + + A   LVD   
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVA-NQASLPLVD--- 191

Query: 109 SHRKEHLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ 161
                            K  +GNT LH A L      ++LL++  +       + TVN+ 
Sbjct: 192 ------FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL------VGTVNEA 239

Query: 162 GQTALQLCNANSQDS 176
           G+TAL +        
Sbjct: 240 GETALDIARKKHHKE 254

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 34/252 (13%), Positives = 84/252 (33%), Gaps = 73/252 (28%)

Query: 51  MIPLHRAALEGD------SDVIRALVSICPESLEKL--TSNGETALHL---AVKKSRSDA 99
           ++ +   A   +       D+ ++++S   E ++ +  + +  +        +   + + 
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 100 FQALVDEAKSHRKEHLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNR-RI 151
            Q  V+E    R  + F         +     T +++   ++L    ++  + N +R + 
Sbjct: 79  VQKFVEEV--LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 152 MIRINTVNKQ---------------GQT--ALQLCNANSQDSVFK-EIGWI--------- 184
            +++     +               G+T  AL +C +         +I W+         
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 185 -----IQRAVAQQSP---QLPDAGSANVSWNQTRWPIETRNVL--------LMVV----- 223
                +Q+ + Q  P      D  S+N+         E R +L        L+V+     
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 224 VTIAAAFFTVTC 235
                A F ++C
Sbjct: 256 AKAWNA-FNLSC 266

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 47/216 (21%)

Query: 1   MARLWPQLASIKNQRGETTMH---LLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRA 57
           ++ +W  +           +H   L+        + I      EL ++++N     LHR+
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLEN--EYALHRS 448

Query: 58  ALEGDSDVIRALVSICPESLEKLTSNGETALHLA--VKKSRSDAFQALVDEAKSHRKEHL 115
            ++          +   + L     +     H+   +K           +     R   L
Sbjct: 449 IVDHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP------ERMTLFRMVFL 498

Query: 116 -FTW---KDKEGNTVLH-----LATLNKLKQIVELLIRENSN---RRIMIRINTVNKQG- 162
            F +   K +  +T  +     L TL +LK   +  I +N     R +   ++ + K   
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 163 -----------QTALQLCNANSQDSVFKEIGWIIQR 187
                      + AL        +++F+E    +QR
Sbjct: 558 NLICSKYTDLLRIALM----AEDEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.98
2etb_A	256	Transient receptor potential cation channel subfam	99.98
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.4e-36  Score=225.35  Aligned_cols=159  Identities=26%  Similarity=0.377  Sum_probs=146.3

Q ss_pred             CHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCCh
Q 037085           18 TTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS   97 (248)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~   97 (248)
                      +.|+.||..|+.++|+.|++.|+++ +.+|..|.||||+|+..++.+++++|++.+ .+++.+|..|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~g-ad~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcc-cchhhhccCCCCHHHHHHHcCCH
Confidence            3699999999999999999999998 889999999999999999999999999984 56889999999999999999999


Q ss_pred             HHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCch
Q 037085           98 DAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSV  177 (248)
Q Consensus        98 ~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~  177 (248)
                      +++++|+++|++      ++.+|..|+||||+|+..|+.+++++|+++|+      +++.+|..|+|||++|+..    +
T Consensus        84 ~~v~~Ll~~gad------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga------d~~~~d~~G~TpL~~A~~~----g  147 (169)
T 4gpm_A           84 EVVKLLISKGAD------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGA------DVNTSDSDGRTPLDLAREH----G  147 (169)
T ss_dssp             HHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHT----T
T ss_pred             HHHHHHHHCcCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CccccCCCCCCHHHHHHHc----C
Confidence            999999999988      89999999999999999999999999999998      8999999999999999988    7


Q ss_pred             HHHHHHHHHHhhhhcCC
Q 037085          178 FKEIGWIIQRAVAQQSP  194 (248)
Q Consensus       178 ~~~i~~~L~~~g~~~~~  194 (248)
                      +.+++++|+++||++.-
T Consensus       148 ~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          148 NEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CHHHHHHHHTC------
T ss_pred             CHHHHHHHHHCCCCcCC
Confidence            89999999999998753

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.2e-36  Score=235.19  Aligned_cols=189  Identities=19%  Similarity=0.177  Sum_probs=167.7

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT   81 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   81 (248)
                      ++..++.....|..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.++..++..+
T Consensus        43 l~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  121 (253)
T 1yyh_A           43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM  121 (253)
T ss_dssp             ---------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC
T ss_pred             HHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence            44555555667899999999999999999999999999998 78899999999999999999999999999776788899


Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCC
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ  161 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  161 (248)
                      ..|.||||+|+..++.+++++|+++|++      ++.+|..|.||||+|+..|+.+++++|+++|+      +++.+|..
T Consensus       122 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~  189 (253)
T 1yyh_A          122 HDGTTPLILAARLAVEGMLEDLINSHAD------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA------NKDMQNNR  189 (253)
T ss_dssp             TTCCCHHHHHHHHTCSSHHHHHHHTTCC------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTT
T ss_pred             CCCCcHHHHHHHcChHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCC
Confidence            9999999999999999999999999988      88999999999999999999999999999998      89999999


Q ss_pred             CCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          162 GQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       162 g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      |.||||+|+..    ++.+++++|+++|++++.....+.+ |++++.
T Consensus       190 g~tpL~~A~~~----~~~~~v~~Ll~~ga~~~~~d~~g~t-pl~~A~  231 (253)
T 1yyh_A          190 EETPLFLAARE----GSYETAKVLLDHFANRDITDHMDRL-PRDIAQ  231 (253)
T ss_dssp             SCCHHHHHHHH----TCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHH
T ss_pred             CCCHHHHHHHC----CCHHHHHHHHHcCCCccccccCCCC-HHHHHH
Confidence            99999999988    7889999999999999887766555 766554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.7e-35  Score=227.14  Aligned_cols=190  Identities=18%  Similarity=0.179  Sum_probs=172.3

Q ss_pred             CcccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhh
Q 037085            1 MARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKL   80 (248)
Q Consensus         1 il~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~   80 (248)
                      |++..++.....|..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.++..++..
T Consensus        10 Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~   88 (223)
T 2f8y_A           10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR   88 (223)
T ss_dssp             TEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCC
T ss_pred             HHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence            345556666667899999999999999999999999999988 7889999999999999999999999999977678888


Q ss_pred             ccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCC
Q 037085           81 TSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK  160 (248)
Q Consensus        81 ~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~  160 (248)
                      +..|.||||+|+..++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +++.+|.
T Consensus        89 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~  156 (223)
T 2f8y_A           89 MHDGTTPLILAARLAVEGMLEDLINSHAD------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA------NKDMQNN  156 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC------CTTCCCT
T ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHHcCCC------CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC------CCCCcCC
Confidence            99999999999999999999999999888      88899999999999999999999999999997      8999999


Q ss_pred             CCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          161 QGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       161 ~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      .|.||||+|+..    ++.+++++|+++|++++.....+.+ |++.+.
T Consensus       157 ~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~~~~~~g~t-~l~~A~  199 (223)
T 2f8y_A          157 REETPLFLAARE----GSYETAKVLLDHFANRDITDHMDRL-PRDIAQ  199 (223)
T ss_dssp             TCCCHHHHHHHH----TCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHH
T ss_pred             CCcCHHHHHHHc----CCHHHHHHHHHcCCCCccccccCCC-HHHHHH
Confidence            999999999988    7889999999999998877665544 666554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.8e-34  Score=223.85  Aligned_cols=192  Identities=24%  Similarity=0.198  Sum_probs=171.4

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcC--cchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhC-chhhh
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENN--RELCLEVDNSLMIPLHRAALEGDSDVIRALVSIC-PESLE   78 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~-~~~~~   78 (248)
                      |+..+......|..|.||||+|+..|+.+++++|++.+  .+.....+..|.||||+|+..|+.+++++|++.+ ...++
T Consensus        22 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  101 (228)
T 2dzn_A           22 LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN  101 (228)
T ss_dssp             HHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTT
T ss_pred             HhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc
Confidence            45566666778999999999999999999999999999  5553337889999999999999999999999985 25678


Q ss_pred             hhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccccccccccccc
Q 037085           79 KLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV  158 (248)
Q Consensus        79 ~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  158 (248)
                      ..+..|.||||+|+..++.+++++|+++|++      ++.+|..|.||||+|+..|+.+++++|++.|.     .+++.+
T Consensus       102 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~  170 (228)
T 2dzn_A          102 KITNQGVTCLHLAVGKKWFEVSQFLIENGAS------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGK-----SAVNWQ  170 (228)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC-----CCSCCC
T ss_pred             cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC------ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCc-----ccccCc
Confidence            8899999999999999999999999999888      88999999999999999999999999999993     289999


Q ss_pred             CCCCCCHHHHHHHcCCCchHHHHHHHHH-HhhhhcCCCCCCCCCcccccccc
Q 037085          159 NKQGQTALQLCNANSQDSVFKEIGWIIQ-RAVAQQSPQLPDAGSANVSWNQT  209 (248)
Q Consensus       159 ~~~g~tpl~~a~~~~~~~~~~~i~~~L~-~~g~~~~~~~~~~~~~~~~~~~~  209 (248)
                      |..|+||||+|+..    ++.+++++|+ ++|++++.....+.+ |++++..
T Consensus       171 d~~g~t~L~~A~~~----~~~~~v~~Ll~~~ga~~~~~~~~g~t-~l~~A~~  217 (228)
T 2dzn_A          171 DKQGWTPLFHALAE----GHGDAAVLLVEKYGAEYDLVDNKGAK-AEDVALN  217 (228)
T ss_dssp             CTTSCCHHHHHHHT----TCHHHHHHHHHHHCCCSCCBCTTSCB-GGGGCSS
T ss_pred             CCCCCCHHHHHHHc----CCHHHHHHHHHhcCCCCCccCCCCCc-HHHHHHH
Confidence            99999999999988    7889999999 999999988876665 8877653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6.9e-35  Score=233.00  Aligned_cols=182  Identities=22%  Similarity=0.231  Sum_probs=128.1

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCch-------------
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE-------------   75 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~-------------   75 (248)
                      ++..|..|.||||+|+..|+.+++++|+++++++ +.++..|.||||+|+..|+.+++++|++.++.             
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS  116 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcc
Confidence            5566677777777777777777777777777766 56677777777777777777777777765322             


Q ss_pred             ---------------------------------hhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccC-
Q 037085           76 ---------------------------------SLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDK-  121 (248)
Q Consensus        76 ---------------------------------~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-  121 (248)
                                                       .++.++..|.||||+|+..|+.+++++|+++|++      ++..+. 
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~  190 (282)
T 1oy3_D          117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD------LNKPEPT  190 (282)
T ss_dssp             ---------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTT
T ss_pred             cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCC
Confidence                                             2445566778888888888888888888887777      666664 


Q ss_pred             CCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCC
Q 037085          122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGS  201 (248)
Q Consensus       122 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~  201 (248)
                      .|.||||+|+..|+.+++++|+++|+      +++.+|..|+||||+|+..    ++.+++++|+++|++++.+...+.+
T Consensus       191 ~g~tpL~~A~~~~~~~~v~~Ll~~ga------d~~~~d~~g~tpL~~A~~~----~~~~~v~~Ll~~ga~~~~~~~~g~t  260 (282)
T 1oy3_D          191 CGRTPLHLAVEAQAASVLELLLKAGA------DPTARMYGGRTPLGSALLR----PNPILARLLRAHGAPEPEDGGDKLS  260 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHTS----SCHHHHHHHHHTTCCCCCCC-----
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCC------CCcccccCCCCHHHHHHHc----CCcHHHHHHHHcCCCcCcCCCcccc
Confidence            48888888888888888888888876      7788888888888888776    6778888888888887776666554


Q ss_pred             ccccccc
Q 037085          202 ANVSWNQ  208 (248)
Q Consensus       202 ~~~~~~~  208 (248)
                       |++++.
T Consensus       261 -pl~~a~  266 (282)
T 1oy3_D          261 -PCSSSG  266 (282)
T ss_dssp             -------
T ss_pred             -cccccC
Confidence             665443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9.6e-35  Score=225.95  Aligned_cols=188  Identities=21%  Similarity=0.237  Sum_probs=171.3

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT   81 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   81 (248)
                      ++..+...+..+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.+ ..++.++
T Consensus        26 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~  103 (231)
T 3aji_A           26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKG-AHVNAVN  103 (231)
T ss_dssp             HHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHHHHcC-CCCCCCC
Confidence            44566777888999999999999999999999999999987 778999999999999999999999999984 4578889


Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCC
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ  161 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  161 (248)
                      ..|.||||+|+..++.+++++|+++|.+      ++.++..|.||||+|+..|+.+++++|+++|+      +++.+|..
T Consensus       104 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~  171 (231)
T 3aji_A          104 QNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYDATAMHRAAAKGNLKMVHILLFYKA------STNIQDTE  171 (231)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CSCCCCTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC------CccccCCC
Confidence            9999999999999999999999999888      88899999999999999999999999999997      89999999


Q ss_pred             CCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          162 GQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       162 g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      |.||||+|+..    ++.+++++|+++|++++.....+.+ |++.+.
T Consensus       172 g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~~~~~~g~t-~l~~A~  213 (231)
T 3aji_A          172 GNTPLHLACDE----ERVEEAKFLVTQGASIYIENKEEKT-PLQVAK  213 (231)
T ss_dssp             SCCHHHHHHHT----TCHHHHHHHHHTTCCSCCCCTTSCC-HHHHSC
T ss_pred             CCCHHHHHHHC----CCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHH
Confidence            99999999988    7899999999999999877766555 776553

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.7e-34  Score=218.76  Aligned_cols=185  Identities=17%  Similarity=0.191  Sum_probs=148.1

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAV   92 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~   92 (248)
                      +..+.||||.|+..|+.+.++.|++.+....+..+..|.||||+|+..|+.+++++|++. +.+++.++..|.||||+|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAG   80 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence            456888899999999888888888888744477888888999999988899999988887 4457778888889999988


Q ss_pred             HcCChHHHHHHHHHHh-ccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHH
Q 037085           93 KKSRSDAFQALVDEAK-SHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNA  171 (248)
Q Consensus        93 ~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~  171 (248)
                      ..++.+++++|++.+. +      ++..+..|.||||+|+..++.+++++|+++|.     .+++.+|..|+||||+|+.
T Consensus        81 ~~~~~~~~~~Ll~~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~~g~t~L~~A~~  149 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPD------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR-----EDIDFQNDFGYTALIEAVG  149 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCC------TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC-----CCTTCCCTTSCCHHHHHHH
T ss_pred             HcCCHHHHHHHHhccCcc------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCC-----CCcCCCCCCCCCHHHHHHH
Confidence            8888888888885543 3      77788888899999998888899998888883     2788888888899998887


Q ss_pred             cCC-CchHHHHHHHHHHhhhhcCCCCCCCCCccccccccC
Q 037085          172 NSQ-DSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTR  210 (248)
Q Consensus       172 ~~~-~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~  210 (248)
                      .+. ...+.+++++|+++|++++.....+.+ |++++...
T Consensus       150 ~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t-~l~~A~~~  188 (201)
T 3hra_A          150 LREGNQLYQDIVKLLMENGADQSIKDNSGRT-AMDYANQK  188 (201)
T ss_dssp             SSCCSHHHHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHH
T ss_pred             hccchhhHHHHHHHHHHCCCCCCccCCCCCC-HHHHHHHc
Confidence            754 334588888888888888887766555 77765543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=3.5e-34  Score=216.91  Aligned_cols=167  Identities=18%  Similarity=0.122  Sum_probs=155.9

Q ss_pred             chhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCC
Q 037085            6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGE   85 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   85 (248)
                      +.+.+.+|..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.+ ..++.+|..|.
T Consensus        25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~  102 (192)
T 2rfm_A           25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKG-SNVNTKDFSGK  102 (192)
T ss_dssp             HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSC
T ss_pred             HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCC
Confidence            3456678999999999999999999999999999887 788999999999999999999999999995 45788899999


Q ss_pred             cHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCH
Q 037085           86 TALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTA  165 (248)
Q Consensus        86 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tp  165 (248)
                      ||||+|+..++.+++++|+++|++      ++.+|..|.||||+|+..|+.+++++|+++|+      +++.+|..|.||
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~  170 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGAN------VNDRNLEGETPLIVASKYGRSEIVKKLLELGA------DISARDLTGLTA  170 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CTTCBCTTSCBH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCH
Confidence            999999999999999999999988      88999999999999999999999999999998      899999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHhhh
Q 037085          166 LQLCNANSQDSVFKEIGWIIQRAVA  190 (248)
Q Consensus       166 l~~a~~~~~~~~~~~i~~~L~~~g~  190 (248)
                      +++|+..    ++.+++++|+++|.
T Consensus       171 l~~A~~~----~~~~~v~~Ll~~~~  191 (192)
T 2rfm_A          171 EASARIF----GRQEVIKIFTEVRR  191 (192)
T ss_dssp             HHHHHHT----TCHHHHHHHHHHHH
T ss_pred             HHHHHHh----CcHHHHHHHHhccC
Confidence            9999988    78999999998863

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2e-33  Score=208.05  Aligned_cols=164  Identities=20%  Similarity=0.242  Sum_probs=154.3

Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHc
Q 037085           15 RGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKK   94 (248)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~   94 (248)
                      .|.||||.|+..|+.++++.|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +..++..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHc
Confidence            6899999999999999999999999887 78899999999999999999999999998 456788899999999999999


Q ss_pred             CChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCC
Q 037085           95 SRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQ  174 (248)
Q Consensus        95 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~  174 (248)
                      ++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +++.+|..|.||+++|+..  
T Consensus        80 ~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~l~~A~~~--  145 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA------DPTIETDSGYNSMDLAVAL--  145 (167)
T ss_dssp             TCHHHHHHHHHHTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHH--
T ss_pred             CCHHHHHHHHHCCCC------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHHc--
Confidence            999999999999988      88999999999999999999999999999998      8899999999999999988  


Q ss_pred             CchHHHHHHHHHHhhhhcCCCC
Q 037085          175 DSVFKEIGWIIQRAVAQQSPQL  196 (248)
Q Consensus       175 ~~~~~~i~~~L~~~g~~~~~~~  196 (248)
                        ++.+++++|++++++.....
T Consensus       146 --~~~~~~~~L~~~~~~~~~~~  165 (167)
T 3v31_A          146 --GYRSVQQVIESHLLKLLQNI  165 (167)
T ss_dssp             --TCHHHHHHHHHHHHHHCSSC
T ss_pred             --CcHHHHHHHHHHHHHHHHHh
Confidence              78999999999999877654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.3e-34  Score=223.85  Aligned_cols=176  Identities=23%  Similarity=0.260  Sum_probs=159.0

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCch-----hhhhhcc
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE-----SLEKLTS   82 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~-----~~~~~~~   82 (248)
                      .++..|..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.+..     ..+..+.
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY  115 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCC
Confidence            46778899999999999999999999999999988 77899999999999999999999999998642     2567788


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccC-CCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCC
Q 037085           83 NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDK-EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ  161 (248)
Q Consensus        83 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  161 (248)
                      .|.||||+|+..|+.+++++|+++|++      ++.++. .|.||||+|+..|+.+++++|+++|+      +++.+|..
T Consensus       116 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~  183 (236)
T 1ikn_D          116 NGHTCLHLASIHGYLGIVELLVSLGAD------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA------DVNRVTYQ  183 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC------CSCCCCTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCcccCC
Confidence            899999999999999999999999988      888887 99999999999999999999999998      89999999


Q ss_pred             CCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCC
Q 037085          162 GQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAG  200 (248)
Q Consensus       162 g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~  200 (248)
                      |.|||++|+..    ++.+++++|+++|++.....++..
T Consensus       184 g~tpl~~A~~~----~~~~~~~~Ll~~ga~~~~~~~~~~  218 (236)
T 1ikn_D          184 GYSPYQLTWGR----PSTRIQQQLGQLTLENLQMLPESE  218 (236)
T ss_dssp             CCCGGGGCTTS----SCHHHHHHHHTTSCGGGSSCCCCC
T ss_pred             CCCHHHHHHcc----CchHHHHHHHHcchhhhhcCCccc
Confidence            99999999877    789999999999998876555543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.2e-33  Score=219.92  Aligned_cols=164  Identities=21%  Similarity=0.226  Sum_probs=75.9

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhc-CcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhh----hhhccCCCcHHHH
Q 037085           16 GETTMHLLSTDGDARMVRIFGEN-NRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESL----EKLTSNGETALHL   90 (248)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~----~~~~~~g~t~lh~   90 (248)
                      |+||||+|+..|+.++++.|++. +.++ +.+|..|.||||+|+..|+.+++++|++.+++..    +..|..|.||||+
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            44455555555555555444444 3333 4444444455555554455555555444433211    2233344455555


Q ss_pred             HHHcCChHHHHHHHHHHhcccccccccccc-------------CCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccc
Q 037085           91 AVKKSRSDAFQALVDEAKSHRKEHLFTWKD-------------KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINT  157 (248)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-------------~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  157 (248)
                      |+..|+.+++++|+++|++      ++..+             ..|.||||+|+..|+.+++++|+++|+      +++.
T Consensus        82 A~~~~~~~~v~~Ll~~g~~------~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~  149 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGAS------VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA------DIRA  149 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCC------TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTC------CTTC
T ss_pred             HHHcCCHHHHHHHHhCCCC------CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCC
Confidence            5444444555544444444      22222             244455555554444455555444444      4444


Q ss_pred             cCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhc
Q 037085          158 VNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQ  192 (248)
Q Consensus       158 ~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~  192 (248)
                      +|..|+||||+|+..+......+++++|+++|++.
T Consensus       150 ~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          150 QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence            44444555555444444444444444444444444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.3e-33  Score=220.74  Aligned_cols=185  Identities=22%  Similarity=0.238  Sum_probs=148.4

Q ss_pred             chhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCch---hhhhhcc
Q 037085            6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE---SLEKLTS   82 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~---~~~~~~~   82 (248)
                      +..++..|..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.++.   .++..+.
T Consensus        36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  114 (241)
T 1k1a_A           36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY  114 (241)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT
T ss_pred             CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCc
Confidence            3345566777888888888888888888888888776 66777888888888888888888888887542   4566777


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHHHHhcccccccccccc-CCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCC
Q 037085           83 NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD-KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ  161 (248)
Q Consensus        83 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  161 (248)
                      .|.||||+|+..++.+++++|+++|++      ++..+ ..|.||||+|+..++.+++++|+++|+      +++.+|..
T Consensus       115 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~  182 (241)
T 1k1a_A          115 DGLTALHVAVNTECQETVQLLLERGAD------IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA------NVNAQMYS  182 (241)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCBCTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC------cccccccCCCcHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCC
Confidence            888888888888888888888888777      66677 788999999999999999999999887      78888999


Q ss_pred             CCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          162 GQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       162 g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      |.||||+|+..    ++.+++++|+++|++++.+...+.+ |++++.
T Consensus       183 g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~~~~~~g~t-pl~~A~  224 (241)
T 1k1a_A          183 GSSALHSASGR----GLLPLVRTLVRSGADSSLKNCHNDT-PLMVAR  224 (241)
T ss_dssp             SCBHHHHHHHH----TCHHHHHHHHHTTCCTTCCCTTSCC-TTTTCS
T ss_pred             CCCHHHHHHHc----CCHHHHHHHHhcCCCCCCcCCCCCC-HHHHHH
Confidence            99999999887    6788999999999998877765554 776654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=2.1e-33  Score=208.91  Aligned_cols=168  Identities=20%  Similarity=0.233  Sum_probs=152.9

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcC
Q 037085           16 GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKS   95 (248)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~   95 (248)
                      +.||||.|+..|+.++++.|++.+....+.++..|.||||+|+..|+.+++++|++.+ .+++.++..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCchhhcccCCCHHHHHHHCC
Confidence            5789999999999999999999999866889999999999999999999999999985 558888999999999999999


Q ss_pred             ChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCC
Q 037085           96 RSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQD  175 (248)
Q Consensus        96 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~  175 (248)
                      +.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +++.+|..|.|||++|+..   
T Consensus        81 ~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~~~---  145 (172)
T 3v30_A           81 YTDIVGLLLERDVD------INIYDWNGGTPLLYAVRGNHVKCVEALLARGA------DLTTEADSGYTPMDLAVAL---  145 (172)
T ss_dssp             CHHHHHHHHTTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHH---
T ss_pred             CHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CccccCCCCCCHHHHHHHh---
Confidence            99999999999888      88999999999999999999999999999998      8999999999999999988   


Q ss_pred             chHHHHHHHHHHhhhhcCCCCCCCC
Q 037085          176 SVFKEIGWIIQRAVAQQSPQLPDAG  200 (248)
Q Consensus       176 ~~~~~i~~~L~~~g~~~~~~~~~~~  200 (248)
                       ++.+++++|+++|++.......+.
T Consensus       146 -~~~~~~~~L~~~~~~~~~~~~~~~  169 (172)
T 3v30_A          146 -GYRKVQQVIENHILKLFQSNLVPA  169 (172)
T ss_dssp             -TCHHHHHHHHHHHHHHSCC-----
T ss_pred             -CcHHHHHHHHHHHHHHhcccCCCC
Confidence             789999999999999887665443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.5e-34  Score=227.00  Aligned_cols=190  Identities=19%  Similarity=0.219  Sum_probs=165.7

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcch--hhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCc
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNREL--CLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGET   86 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t   86 (248)
                      ++..|.+|+||||+|+..|+.+++++|++.+...  .+.++..|.||||+|+..|+.+++++|++.+ ..++.++..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCC
Confidence            4568999999999999999999999999988762  3778999999999999999999999999984 558888999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccc-----------------------------------------cccccccccCCCCc
Q 037085           87 ALHLAVKKSRSDAFQALVDEAKSHR-----------------------------------------KEHLFTWKDKEGNT  125 (248)
Q Consensus        87 ~lh~a~~~~~~~~~~~Ll~~~~~~~-----------------------------------------~~~~~~~~~~~g~t  125 (248)
                      |||+|+..++.+++++|+++++...                                         ....++.++..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            9999999999999999998664321                                         11236778999999


Q ss_pred             HhHHHHhCCcHHHHHHHHhhcccccccccccccCCC-CCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccc
Q 037085          126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ-GQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANV  204 (248)
Q Consensus       126 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~-g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~  204 (248)
                      |||+|+..|+.+++++|+++|+      +++..+.. |+||||+|+..    ++.+++++|+++|++++.+...+.+ |+
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~~g~tpL~~A~~~----~~~~~v~~Ll~~gad~~~~d~~g~t-pL  229 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGA------DLNKPEPTCGRTPLHLAVEA----QAASVLELLLKAGADPTARMYGGRT-PL  229 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTC------CTTCCCTTTCCCHHHHHHHT----TCHHHHHHHHHTTCCTTCCCTTSCC-HH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCC------CCCCCCCCCCcCHHHHHHHc----CCHHHHHHHHHcCCCCcccccCCCC-HH
Confidence            9999999999999999999998      78888864 99999999988    7899999999999999988766655 88


Q ss_pred             cccccC
Q 037085          205 SWNQTR  210 (248)
Q Consensus       205 ~~~~~~  210 (248)
                      +++...
T Consensus       230 ~~A~~~  235 (282)
T 1oy3_D          230 GSALLR  235 (282)
T ss_dssp             HHHHTS
T ss_pred             HHHHHc
Confidence            766543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.2e-33  Score=219.10  Aligned_cols=183  Identities=16%  Similarity=0.176  Sum_probs=156.0

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      ++..+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.++..++..+..|.|||
T Consensus        37 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  115 (237)
T 3b7b_A           37 IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM  115 (237)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHH
T ss_pred             cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHH
Confidence            4556778888888888888888888888888877 667888888888888888888888888886667778888899999


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHH
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL  168 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~  168 (248)
                      |+|+..++.+++++|+++|++      ++.++..|.||||+|+..|+.+++++|+++|+      +++.+|..|.||||+
T Consensus       116 ~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~  183 (237)
T 3b7b_A          116 IWATEYKHVDLVKLLLSKGSD------INIRDNEENICLHWAAFSGCVDIAEILLAAKC------DLHAVNIHGDSPLHI  183 (237)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTC------CTTCCCTTCCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCC------CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCC------CCCCcCCCCCCHHHH
Confidence            999999999999999988877      78888999999999999999999999999987      788899999999999


Q ss_pred             HHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccccc
Q 037085          169 CNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQT  209 (248)
Q Consensus       169 a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~  209 (248)
                      |+..    +..+++++|+++|++++.....+.+ |++++..
T Consensus       184 A~~~----~~~~~v~~Ll~~gad~~~~d~~g~t-~l~~A~~  219 (237)
T 3b7b_A          184 AARE----NRYDCVVLFLSRDSDVTLKNKEGET-PLQCASL  219 (237)
T ss_dssp             HHHT----TCHHHHHHHHTTTCCTTCCCTTSCC-HHHHSCT
T ss_pred             HHHh----CCHhHHHHHHHcCCCCCccCCCCCC-HHHHHHH
Confidence            9987    6789999999999998887766555 7776654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.5e-34  Score=224.99  Aligned_cols=182  Identities=21%  Similarity=0.250  Sum_probs=133.4

Q ss_pred             HhhhccCCCCHHHHHHhCC-------------CHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCch
Q 037085            9 ASIKNQRGETTMHLLSTDG-------------DARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE   75 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~   75 (248)
                      ++.+|.+|.||||+|+..|             +.++++.|++.+.++....|..|.||||+|+..|+.+++++|++.+ .
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~   81 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS-A   81 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT-C
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-C
Confidence            5678999999999999987             8999999999999987777999999999999999999999999984 5


Q ss_pred             hhhhhccCCCcHHHHHHHcCChHHHHHHHHHHh-ccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccccccccc
Q 037085           76 SLEKLTSNGETALHLAVKKSRSDAFQALVDEAK-SHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIR  154 (248)
Q Consensus        76 ~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~  154 (248)
                      +++.++..|.||||+|+..++.+++++|++++. +      ++..+..|.||||+|+..++.+++++|++.|+      +
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~  149 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD------LDARMHDGTTPLILAARLAVEGMLEDLINSHA------D  149 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC------TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC------C
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------ccccCCCCCcHHHHHHHcChHHHHHHHHHcCC------C
Confidence            588889999999999999999999999999876 4      78899999999999999999999999999997      8


Q ss_pred             ccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          155 INTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       155 ~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      ++.+|..|.||||+|+..    ++.+++++|+++|++++.....+.+ |++.+.
T Consensus       150 ~~~~d~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~~~~~~g~t-pL~~A~  198 (253)
T 1yyh_A          150 VNAVDDLGKSALHWAAAV----NNVDAAVVLLKNGANKDMQNNREET-PLFLAA  198 (253)
T ss_dssp             TTCBCTTSCBHHHHHHHH----TCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHH
Confidence            999999999999999988    7899999999999999888766555 776554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.8e-33  Score=228.21  Aligned_cols=193  Identities=19%  Similarity=0.205  Sum_probs=164.6

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT   81 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   81 (248)
                      |...+...+..|..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.+ ..++..+
T Consensus        44 l~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-~~~~~~~  121 (351)
T 3utm_A           44 LTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHG-ACVNAMD  121 (351)
T ss_dssp             CCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCC
Confidence            34455566778899999999999999999999999999988 788999999999999999999999999984 5578888


Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHHhccc--------------------------------------------------
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEAKSHR--------------------------------------------------  111 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~--------------------------------------------------  111 (248)
                      ..|.||||+|+..++.+++++|+++|+++.                                                  
T Consensus       122 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  201 (351)
T 3utm_A          122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE  201 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhh
Confidence            999999999999999999999998766532                                                  


Q ss_pred             ----------------------------------cccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccc
Q 037085          112 ----------------------------------KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINT  157 (248)
Q Consensus       112 ----------------------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  157 (248)
                                                        ....++.+|..|.||||+|+..|+.+++++|+++|+      +++.
T Consensus       202 ~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga------~~n~  275 (351)
T 3utm_A          202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA------KMNA  275 (351)
T ss_dssp             CTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTC
T ss_pred             cccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCC
Confidence                                              112345678889999999999999999999999987      8889


Q ss_pred             cCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccc
Q 037085          158 VNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       158 ~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                      +|..|+||||+|+..    ++.+++++|+++|++++.....+.+ +++.+
T Consensus       276 ~d~~g~t~L~~A~~~----~~~~~v~~Ll~~gad~~~~~~~g~t-al~~a  320 (351)
T 3utm_A          276 LDSLGQTALHRAALA----GHLQTCRLLLSYGSDPSIISLQGFT-AAQMG  320 (351)
T ss_dssp             CCTTSCCHHHHHHHH----TCHHHHHHHHHTTCCTTCCCTTSCC-HHHHS
T ss_pred             cCCCCCCHHHHHHHc----CcHHHHHHHHHcCCCCCCcCCCCCC-hhhhh
Confidence            999999999999987    7889999999999998887766655 66554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5e-34  Score=227.20  Aligned_cols=183  Identities=20%  Similarity=0.176  Sum_probs=123.1

Q ss_pred             hhHhhhccCCCCHHHHHHhCCCH-HHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCC
Q 037085            7 QLASIKNQRGETTMHLLSTDGDA-RMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGE   85 (248)
Q Consensus         7 ~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   85 (248)
                      ..++..+..|.||||.|+..+.. .+++.|++.|.++ +.+|.+|.||||+|+..|+.+++++|++.+ .+++..+..|.
T Consensus        43 ~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~-a~~~~~~~~g~  120 (269)
T 4b93_B           43 DTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRADLIPLLLKHG-ANAGARNADQA  120 (269)
T ss_dssp             --------------------------------CCCCT-TCCCTTSCCHHHHHHHTTCTTHHHHHHHTT-CCTTCCCTTCC
T ss_pred             ccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCcCccCCCCC
Confidence            34566777888888888877665 4778888888887 677888888888888888888888888874 44677778888


Q ss_pred             cHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCH
Q 037085           86 TALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTA  165 (248)
Q Consensus        86 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tp  165 (248)
                      ||+|+|+..++.+++++|++.|++      ++.+|..|.||||+|+..|+.+++++|+++|+      |++.++..|.||
T Consensus       121 t~l~~a~~~~~~~~~~~Ll~~g~~------~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga------dvn~~~~~g~t~  188 (269)
T 4b93_B          121 VPLHLACQQGHFQVVKCLLDSNAK------PNKKDLSGNTPLIYACSGGHHELVALLLQHGA------SINASNNKGNTA  188 (269)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC------SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTC------CTTCBCTTSCBH
T ss_pred             CccccccccChHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC------CCCccccCCCcH
Confidence            888888888888888888888777      77788888888888888888888888888887      788888888888


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          166 LQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       166 l~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      ||+|+..    ++.+++++|+++|++++.....+.+ |++++.
T Consensus       189 Lh~A~~~----g~~~~v~~Ll~~Gad~~~~d~~G~T-pL~~A~  226 (269)
T 4b93_B          189 LHEAVIE----KHVFVVELLLLHGASVQVLNKRQRT-AVDCAE  226 (269)
T ss_dssp             HHHHHHT----TCHHHHHHHHHTTCCSCCCCTTSCC-SGGGSC
T ss_pred             HHHHHHc----CCHHHHHHHHHCCCCCCCcCCCCCC-HHHHHH
Confidence            8888877    6778888888888888777766554 777664

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=224.52  Aligned_cols=170  Identities=23%  Similarity=0.336  Sum_probs=147.7

Q ss_pred             chhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCC
Q 037085            6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGE   85 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   85 (248)
                      +-.++..|.+|+||||+|+..|+.+++++|++.++++ ...+..|.||+|+|+..++.+++++|++.+ .+++.+|..|.
T Consensus        76 Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~n~~d~~g~  153 (269)
T 4b93_B           76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSN-AKPNKKDLSGN  153 (269)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCC
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCC-CCCCCCCCCCC
Confidence            3346778999999999999999999999999999998 788999999999999999999999999984 56888999999


Q ss_pred             cHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCH
Q 037085           86 TALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTA  165 (248)
Q Consensus        86 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tp  165 (248)
                      ||||+|+..|+.+++++|+++|++      ++.++..|.||||+|+..|+.++|++|+++|+      |++.+|..|+||
T Consensus       154 TpL~~A~~~g~~~~v~~Ll~~gad------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga------d~~~~d~~G~Tp  221 (269)
T 4b93_B          154 TPLIYACSGGHHELVALLLQHGAS------INASNNKGNTALHEAVIEKHVFVVELLLLHGA------SVQVLNKRQRTA  221 (269)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC------CSCCCCTTSCCS
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCC------CCccccCCCcHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCH
Confidence            999999999999999999999988      89999999999999999999999999999998      899999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHhhhhc
Q 037085          166 LQLCNANSQDSVFKEIGWIIQRAVAQQ  192 (248)
Q Consensus       166 l~~a~~~~~~~~~~~i~~~L~~~g~~~  192 (248)
                      ||+|+.++   ...+++++|...++..
T Consensus       222 L~~A~~~~---~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          222 VDCAEQNS---KIMELLQVVPSCVASL  245 (269)
T ss_dssp             GGGSCTTC---HHHHHTTC--------
T ss_pred             HHHHHhCC---cHHHHHHHHHHhchhh
Confidence            99997652   1245555555555544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.9e-34  Score=222.89  Aligned_cols=189  Identities=20%  Similarity=0.227  Sum_probs=162.2

Q ss_pred             hhhccCCCCHHHHHHhCCCHHHHHHHHhcCcc---hhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCc
Q 037085           10 SIKNQRGETTMHLLSTDGDARMVRIFGENNRE---LCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGET   86 (248)
Q Consensus        10 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t   86 (248)
                      +..|.+|.||||+|+..|+.++++.|++.+..   ..+..+..|.||||+|+..|+.+++++|++.+ ..++.++..|.|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t   80 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNT   80 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCSCCCCTTCCC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCC
Confidence            35789999999999999999999999998763   23778999999999999999999999999984 568888999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCC-CCCCH
Q 037085           87 ALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK-QGQTA  165 (248)
Q Consensus        87 ~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~-~g~tp  165 (248)
                      |||+|+..++.+++++|++.+.++.....++..+..|.||||+|+..|+.+++++|+++|+      +++.++. .|.||
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~~g~tp  154 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA------DVNAQEPCNGRTA  154 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC------CTTCCCTTTCCCH
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCCCCCCCCCH
Confidence            9999999999999999999987654455578899999999999999999999999999998      8999998 99999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccccC
Q 037085          166 LQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTR  210 (248)
Q Consensus       166 l~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~  210 (248)
                      ||+|+..    ++.+++++|+++|++++.....+.+ |++++...
T Consensus       155 L~~A~~~----~~~~~v~~Ll~~ga~~~~~~~~g~t-pl~~A~~~  194 (236)
T 1ikn_D          155 LHLAVDL----QNPDLVSLLLKCGADVNRVTYQGYS-PYQLTWGR  194 (236)
T ss_dssp             HHHHHHT----TCHHHHHHHHTTTCCSCCCCTTCCC-GGGGCTTS
T ss_pred             HHHHHHc----CCHHHHHHHHHcCCCCCcccCCCCC-HHHHHHcc
Confidence            9999988    7899999999999999988766655 88766543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=5.1e-33  Score=208.24  Aligned_cols=170  Identities=21%  Similarity=0.242  Sum_probs=154.1

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAV   92 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~   92 (248)
                      +.++.++||.|+..|+.++++.|++.+....+..+..|.||||+|+..|+.+++++|++. +.+++.++..|.||||+|+
T Consensus         2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHH
Confidence            356889999999999999999999997665588999999999999999999999999998 4568888999999999999


Q ss_pred             HcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHc
Q 037085           93 KKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN  172 (248)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~  172 (248)
                      ..++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +++.+|..|.||+++|+..
T Consensus        81 ~~~~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A~~~  148 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKAD------INAVNEHGNVPLHYACFWGQDQVAEDLVANGA------LVSICNKYGEMPVDKAKAP  148 (179)
T ss_dssp             HTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CSSBCCTTSCCGGGGSCHH
T ss_pred             HcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CcchhccCCCCcHHHHHHH
Confidence            99999999999999988      88999999999999999999999999999998      8999999999999999876


Q ss_pred             CCCchHHHHHHHHHHhhhhcCCCCCCC
Q 037085          173 SQDSVFKEIGWIIQRAVAQQSPQLPDA  199 (248)
Q Consensus       173 ~~~~~~~~i~~~L~~~g~~~~~~~~~~  199 (248)
                          +..+++++|+++|++++......
T Consensus       149 ----~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          149 ----LRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             ----HHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             ----HHHHHHHHHHHhhcCcccCCccc
Confidence                89999999999999998765543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1e-32  Score=213.31  Aligned_cols=171  Identities=17%  Similarity=0.193  Sum_probs=158.4

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcH
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETA   87 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~   87 (248)
                      ..+..|..|.||||+|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+ ..++..+..|.||
T Consensus        50 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~  128 (223)
T 2f8y_A           50 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSA  128 (223)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC-CCCcCcCCCCCcH
Confidence            356678999999999999999999999999998555888999999999999999999999999984 5588889999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHH
Q 037085           88 LHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQ  167 (248)
Q Consensus        88 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~  167 (248)
                      ||+|+..++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +++.+|..|.||++
T Consensus       129 L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~  196 (223)
T 2f8y_A          129 LHWAAAVNNVDAAVVLLKNGAN------KDMQNNREETPLFLAAREGSYETAKVLLDHFA------NRDITDHMDRLPRD  196 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTCCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC------CCccccccCCCHHH
Confidence            9999999999999999999988      88899999999999999999999999999998      88999999999999


Q ss_pred             HHHHcCCCchHHHHHHHHHHhhhhcCCC
Q 037085          168 LCNANSQDSVFKEIGWIIQRAVAQQSPQ  195 (248)
Q Consensus       168 ~a~~~~~~~~~~~i~~~L~~~g~~~~~~  195 (248)
                      +|+..    ++.+++++|+++|+...++
T Consensus       197 ~A~~~----~~~~i~~~L~~~g~~~~~~  220 (223)
T 2f8y_A          197 IAQER----MHHDIVRLLDEYNLVRSPQ  220 (223)
T ss_dssp             HHHHT----TCHHHHHHHHHTTCSSCC-
T ss_pred             HHHHh----cchHHHHHHHHcCCCcccc
Confidence            99988    7899999999999987664

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.4e-32  Score=214.84  Aligned_cols=186  Identities=25%  Similarity=0.330  Sum_probs=160.3

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHh----cCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccC
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGE----NNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSN   83 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~   83 (248)
                      +++.+|.+|.||||+|+..|+.++++.|++    .+.++ +.+|..|.||||+|+..|+.+++++|++.+ ..++..+..
T Consensus         1 l~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~   78 (241)
T 1k1a_A            1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRH   78 (241)
T ss_dssp             ------CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTT
T ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCC
Confidence            356789999999999999999999999997    56666 778999999999999999999999999984 557888999


Q ss_pred             CCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccC-CCC
Q 037085           84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KQG  162 (248)
Q Consensus        84 g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~-~~g  162 (248)
                      |.||||+|+..++.+++++|++.+...  ...++..+..|.||||+|+..++.+++++|+++|+      +++..+ ..|
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~~g  150 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPG--TLDLEARNYDGLTALHVAVNTECQETVQLLLERGA------DIDAVDIKSG  150 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTT--SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCC------CcccccccCC
Confidence            999999999999999999999998621  11278889999999999999999999999999997      788888 789


Q ss_pred             CCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          163 QTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       163 ~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      .||||+|+..    ++.+++++|+++|++++.....+.+ +++++.
T Consensus       151 ~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~  191 (241)
T 1k1a_A          151 RSPLIHAVEN----NSLSMVQLLLQHGANVNAQMYSGSS-ALHSAS  191 (241)
T ss_dssp             CCHHHHHHHT----TCHHHHHHHHHTTCCTTCBCTTSCB-HHHHHH
T ss_pred             CcHHHHHHHc----CCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHH
Confidence            9999999988    7899999999999999887766554 776654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=6.1e-33  Score=205.96  Aligned_cols=163  Identities=25%  Similarity=0.327  Sum_probs=147.9

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      .......+.++|++|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.+ ..++..+..|.|||
T Consensus         7 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L   84 (169)
T 2y1l_E            7 HHHHGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDHAGMTPL   84 (169)
T ss_dssp             ------CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHH
T ss_pred             cccCCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHH
Confidence            3455677889999999999999999999999988 788999999999999999999999999984 55788899999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHH
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL  168 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~  168 (248)
                      |+|+..++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +++.+|..|.||+++
T Consensus        85 ~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~l~~  152 (169)
T 2y1l_E           85 RLAALFGHLEIVEVLLKNGAD------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA------DVNAQDKFGKTAFDI  152 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHH
Confidence            999999999999999999988      88999999999999999999999999999998      889999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHHhh
Q 037085          169 CNANSQDSVFKEIGWIIQRAV  189 (248)
Q Consensus       169 a~~~~~~~~~~~i~~~L~~~g  189 (248)
                      |+..    ++.+++++|++.|
T Consensus       153 A~~~----~~~~~~~~L~~~G  169 (169)
T 2y1l_E          153 SIDN----GNEDLAEILQKLN  169 (169)
T ss_dssp             HHHT----TCHHHHHHHHTC-
T ss_pred             HHHh----CCHHHHHHHHHcC
Confidence            9988    7899999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=3.3e-33  Score=205.74  Aligned_cols=160  Identities=21%  Similarity=0.255  Sum_probs=146.9

Q ss_pred             cCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHH
Q 037085           14 QRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVK   93 (248)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~   93 (248)
                      ....||||.|+..|+.+++++|++.+.++ +.++..|.||||+|+. |+.+++++|++. +.+++.++..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAAR   79 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHH
Confidence            35679999999999999999999999988 7889999999999999 999999999998 45688889999999999999


Q ss_pred             cCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcC
Q 037085           94 KSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANS  173 (248)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~  173 (248)
                      .++.+++++|+++|++      ++.+|..|.||||+|+..|+.+++++|+++|++     +++.+|..|.||||+|+.. 
T Consensus        80 ~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~~g~t~l~~A~~~-  147 (162)
T 1ihb_A           80 AGFLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLY-  147 (162)
T ss_dssp             HTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC-----CTTCCCTTSCCHHHHHHHT-
T ss_pred             cCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC-----CCCCcCCCCCcHHHHHHHc-
Confidence            9999999999999888      889999999999999999999999999999983     3689999999999999988 


Q ss_pred             CCchHHHHHHHHHHhhhh
Q 037085          174 QDSVFKEIGWIIQRAVAQ  191 (248)
Q Consensus       174 ~~~~~~~i~~~L~~~g~~  191 (248)
                         ++.+++++|+++|++
T Consensus       148 ---~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          148 ---GRNEVVSLMQANGAG  162 (162)
T ss_dssp             ---TCHHHHHHHHHTC--
T ss_pred             ---CCHHHHHHHHHhCCC
Confidence               789999999999985

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.5e-32  Score=211.81  Aligned_cols=177  Identities=18%  Similarity=0.162  Sum_probs=158.8

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCc-hhhhh-hccCCCcHHHHHHH
Q 037085           16 GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICP-ESLEK-LTSNGETALHLAVK   93 (248)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~-~~~~~-~~~~g~t~lh~a~~   93 (248)
                      |.||||+|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++.++ ...+. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            78999999999999999999999998877789999999999999999999999999862 23444 78899999999999


Q ss_pred             cCChHHHHHHHHHH--hccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHH
Q 037085           94 KSRSDAFQALVDEA--KSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNA  171 (248)
Q Consensus        94 ~~~~~~~~~Ll~~~--~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~  171 (248)
                      .|+.+++++|+++|  .+      ++..+..|.||||+|+..++.+++++|+++|+      +++.+|..|.||||+|+.
T Consensus        82 ~~~~~~~~~Ll~~g~~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~  149 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPD------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGA------SVRIKDKFNQIPLHRAAS  149 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcc------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCC------CccccCCCCCCHHHHHHH
Confidence            99999999999987  54      78899999999999999999999999999997      899999999999999998


Q ss_pred             cCCCchHHHHHHHHHHhh-hhcCCCCCCCCCcccccccc
Q 037085          172 NSQDSVFKEIGWIIQRAV-AQQSPQLPDAGSANVSWNQT  209 (248)
Q Consensus       172 ~~~~~~~~~i~~~L~~~g-~~~~~~~~~~~~~~~~~~~~  209 (248)
                      .    ++.+++++|++.| ++++.....+.+ |++++..
T Consensus       150 ~----~~~~~v~~Ll~~g~~~~~~~d~~g~t-~L~~A~~  183 (228)
T 2dzn_A          150 V----GSLKLIELLCGLGKSAVNWQDKQGWT-PLFHALA  183 (228)
T ss_dssp             T----TCHHHHHHHHTTTCCCSCCCCTTSCC-HHHHHHH
T ss_pred             c----CCHHHHHHHHhcCcccccCcCCCCCC-HHHHHHH
Confidence            8    7889999999999 888877766555 7776653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.2e-32  Score=205.71  Aligned_cols=171  Identities=18%  Similarity=0.257  Sum_probs=159.0

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT   81 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   81 (248)
                      |+..+..++..|.+|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.++..++..+
T Consensus        25 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  103 (201)
T 3hra_A           25 LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN  103 (201)
T ss_dssp             HTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             HHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccc
Confidence            44555567788999999999999999999999999999998 78899999999999999999999999987777889999


Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHH-hccccccccccccCCCCcHhHHHHhCCc-----HHHHHHHHhhcccccccccc
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEA-KSHRKEHLFTWKDKEGNTVLHLATLNKL-----KQIVELLIRENSNRRIMIRI  155 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~g~t~Lh~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~  155 (248)
                      ..|.||||+|+..++.+++++|++++ .+      ++.+|..|.||||+|+..++     .+++++|+++|+      ++
T Consensus       104 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga------~~  171 (201)
T 3hra_A          104 RYGGNALIPAAEKGHIDNVKLLLEDGRED------IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA------DQ  171 (201)
T ss_dssp             TTSCCSHHHHHHTTCHHHHHHHHHHCCCC------TTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTC------CT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCC------cCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCC------CC
Confidence            99999999999999999999999998 66      88999999999999999988     999999999998      89


Q ss_pred             cccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhh
Q 037085          156 NTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAV  189 (248)
Q Consensus       156 ~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g  189 (248)
                      +.+|..|+||||+|+..    ++.+++++|+++|
T Consensus       172 ~~~~~~g~t~l~~A~~~----~~~~~~~~Ll~~G  201 (201)
T 3hra_A          172 SIKDNSGRTAMDYANQK----GYTEISKILAQYN  201 (201)
T ss_dssp             TCCCTTSCCHHHHHHHH----TCHHHHHHHHTCC
T ss_pred             CccCCCCCCHHHHHHHc----CCHhHHHHHHhcC
Confidence            99999999999999988    7899999999876

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.2e-32  Score=213.42  Aligned_cols=181  Identities=19%  Similarity=0.245  Sum_probs=164.6

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      .+..|..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..|+.+++++|++.+ ..++.++..|.|||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L   81 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAG-ALVDPKDAEGSTCL   81 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCCCCCCTTSCCHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCcHH
Confidence            3567889999999999999999999999999988 788999999999999999999999999984 55788899999999


Q ss_pred             HHHHHcCChHHHHHHHHHH-hccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHH
Q 037085           89 HLAVKKSRSDAFQALVDEA-KSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQ  167 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~  167 (248)
                      |+|+..|+.+++++|++.+ .+      ++..+..|.||||+|+..++.+++++|+++|+      +++.++..|.||||
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~  149 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMD------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS------DINIRDNEENICLH  149 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCC------cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCccCCCCCCHHH
Confidence            9999999999999999987 44      78899999999999999999999999999998      88999999999999


Q ss_pred             HHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          168 LCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       168 ~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      +|+..    +..+++++|+++|++++.....+.+ |++.+.
T Consensus       150 ~A~~~----~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~  185 (237)
T 3b7b_A          150 WAAFS----GCVDIAEILLAAKCDLHAVNIHGDS-PLHIAA  185 (237)
T ss_dssp             HHHHH----CCHHHHHHHHTTTCCTTCCCTTCCC-HHHHHH
T ss_pred             HHHHC----CCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHH
Confidence            99988    6889999999999999887765554 776554

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.1e-32  Score=218.72  Aligned_cols=176  Identities=16%  Similarity=0.212  Sum_probs=105.7

Q ss_pred             hccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHH
Q 037085           12 KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA   91 (248)
Q Consensus        12 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a   91 (248)
                      .|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++. +..|.||||+|
T Consensus        88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A  164 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEA  164 (285)
T ss_dssp             ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSC-SCTTSCHHHHH
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC-CCC-CCCCCCHHHHH
Confidence            3444444444444444444444444444443 33444444444444444444444444444221 221 22345555555


Q ss_pred             HHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHH
Q 037085           92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNA  171 (248)
Q Consensus        92 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~  171 (248)
                      +..|+.+++++|+++|++      ++.+|..|.||||+|+..|+.+++++|++.|+      +++. +..|.||||+|+.
T Consensus       165 ~~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~-~~~g~t~L~~A~~  231 (285)
T 3d9h_A          165 ARRGHVECVNSLIAYGGN------IDHKISHLGTPLYLACENQQRACVKKLLESGA------DVNQ-GKGQDSPLHAVVR  231 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCC------TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC------CTTC-CBTTBCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC------CCCC-CCCCCCHHHHHHH
Confidence            555555555555555444      66777888888888888888888888888876      5553 7778888888887


Q ss_pred             cCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          172 NSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       172 ~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      .    ++.+++++|+++|++++.+...+.+ |++++.
T Consensus       232 ~----~~~~~v~~Ll~~gad~~~~d~~g~t-~l~~A~  263 (285)
T 3d9h_A          232 T----ASEELACLLMDFGADTQAKNAEGKR-PVELVP  263 (285)
T ss_dssp             T----TCHHHHHHHHHTTCCTTCCCTTSCC-GGGGSC
T ss_pred             c----CCHHHHHHHHHCCCCCCCcCCCCCC-HHHHhc
Confidence            7    6778888888888888777766555 776665

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2e-32  Score=212.81  Aligned_cols=167  Identities=22%  Similarity=0.242  Sum_probs=155.9

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcH
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETA   87 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~   87 (248)
                      .++..|..|.||||+|+..|+.+++++|++++.++ +.++..|.||||+|+..|+.+++++|++.+ ..++.++..|.||
T Consensus        65 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~  142 (231)
T 3aji_A           65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDATA  142 (231)
T ss_dssp             CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred             CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCcH
Confidence            35567889999999999999999999999999998 788999999999999999999999999984 5578889999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHH
Q 037085           88 LHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQ  167 (248)
Q Consensus        88 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~  167 (248)
                      ||+|+..++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +++.+|..|.||++
T Consensus       143 L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~  210 (231)
T 3aji_A          143 MHRAAAKGNLKMVHILLFYKAS------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGA------SIYIENKEEKTPLQ  210 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CSCCCCTTSCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCC------ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCC------CCCCCCCCCCCHHH
Confidence            9999999999999999999888      88899999999999999999999999999998      88999999999999


Q ss_pred             HHHHcCCCchHHHHHHHHHHhhhhc
Q 037085          168 LCNANSQDSVFKEIGWIIQRAVAQQ  192 (248)
Q Consensus       168 ~a~~~~~~~~~~~i~~~L~~~g~~~  192 (248)
                      +|...    ++.+++++|.++|+++
T Consensus       211 ~A~~~----~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          211 VAKGG----LGLILKRLAEGEEASM  231 (231)
T ss_dssp             HSCHH----HHHHHHHHHHHHHHCC
T ss_pred             HHHhh----HHHHHHHHHccccccC
Confidence            99876    8999999999999863

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.5e-32  Score=220.46  Aligned_cols=177  Identities=15%  Similarity=0.139  Sum_probs=154.7

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      ++.+|.+|.||||+|+..|+.+++++|++.+.++ +..  +|.||||+|+..|+.+++++|++.+ .+++.+|..|.|||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~L   99 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLFSG-LDDSQFDDKGNTAL   99 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHHHTT-CCTTCCCTTSCCHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCcHH
Confidence            5778899999999999999999999999999887 434  5899999999999999999999984 45788899999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCC-CcHhHHHHhCCcHHHHHHHHhhcccccccccccccCC-CCCCHH
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEG-NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK-QGQTAL  166 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g-~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~-~g~tpl  166 (248)
                      |+|+..|+.+++++|+++|++      ++.++..| .||||+|+..|+.+++++|+++|++      .  .+. .|.|||
T Consensus       100 ~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~------~--~~~~~g~t~L  165 (285)
T 3kea_A          100 YYAVDSGNMQTVKLFVKKNWR------LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS------T--FDLAILLSCI  165 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHCGG------GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT------T--CCCSTHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCC------CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc------c--ccccCCccHH
Confidence            999999999999999999988      88899999 7999999999999999999999873      3  222 889999


Q ss_pred             HHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccc
Q 037085          167 QLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       167 ~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                      |+|+..    ++.+++++|+++|++++.....+.+.+++++
T Consensus       166 ~~A~~~----g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A  202 (285)
T 3kea_A          166 HITIKN----GHVDMMILLLDYMTSTNTNNSLLFIPDIKLA  202 (285)
T ss_dssp             HHHHHT----TCHHHHHHHHHHHHHTCTTCCCBCCTTHHHH
T ss_pred             HHHHHc----ChHHHHHHHHHcCCCCCcccCCCCChHHHHH
Confidence            999987    7789999999999999888877776546644

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.7e-33  Score=221.21  Aligned_cols=167  Identities=20%  Similarity=0.193  Sum_probs=150.8

Q ss_pred             hccCCCCHHHHHHhC---CCHHHHHHHHhcCcchhh----------hhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhh
Q 037085           12 KNQRGETTMHLLSTD---GDARMVRIFGENNRELCL----------EVDNSLMIPLHRAALEGDSDVIRALVSICPESLE   78 (248)
Q Consensus        12 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~----------~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~   78 (248)
                      .|..|.||||+|+..   |+.+++++|++.+++...          ..|..|.||||+|+..|+.+++++|++.+ .+++
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~  117 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG-ADVH  117 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCTT
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence            688999999999999   999999999999877621          23467999999999999999999999985 4577


Q ss_pred             hhccC-------------CCcHHHHHHHcCChHHHHHHHH---HHhccccccccccccCCCCcHhHHHHh--CCcHH---
Q 037085           79 KLTSN-------------GETALHLAVKKSRSDAFQALVD---EAKSHRKEHLFTWKDKEGNTVLHLATL--NKLKQ---  137 (248)
Q Consensus        79 ~~~~~-------------g~t~lh~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~g~t~Lh~A~~--~~~~~---  137 (248)
                      ..+..             |.||||+|+..|+.+++++|++   +|++      ++.+|..|+||||+|+.  .++.+   
T Consensus       118 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~------~n~~d~~g~TpLh~A~~~~~~~~~~~~  191 (256)
T 2etb_A          118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS------LEATDSLGNTVLHALVMIADNSPENSA  191 (256)
T ss_dssp             CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC------TTCCCTTSCCHHHHHHHHCCSCHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC------cCccCCCCCCHHHHHHHcccCCchhhH
Confidence            77765             9999999999999999999999   8888      89999999999999999  78888   


Q ss_pred             ----HHHHHHhhcccccccccc-------cccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCC
Q 037085          138 ----IVELLIRENSNRRIMIRI-------NTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQ  195 (248)
Q Consensus       138 ----~v~~Ll~~g~~~~~~~~~-------~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~  195 (248)
                          ++++|+++|+      ++       +.+|..|+||||+|+..    ++.+++++|+++|++..+.
T Consensus       192 ~~~~iv~~Ll~~ga------~~~~~~~~~~~~d~~g~tpL~~A~~~----g~~~~v~~Ll~~g~~~~~~  250 (256)
T 2etb_A          192 LVIHMYDGLLQMGA------RLCPTVQLEEISNHQGLTPLKLAAKE----GKIEIFRHILQREFSGAAA  250 (256)
T ss_dssp             HHHHHHHHHHHHHH------HHSTTCCGGGCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC------CcccccccccccCCCCCCHHHHHHHh----CCHHHHHHHHhCCCCCCCc
Confidence                9999999998      67       89999999999999988    7899999999999987543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4e-32  Score=218.03  Aligned_cols=179  Identities=16%  Similarity=0.104  Sum_probs=160.9

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      ....|..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +..++.+|..|.|||
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L  129 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPL  129 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            4567899999999999999999999999999987 78999999999999999999999999998 456888899999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHH
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL  168 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~  168 (248)
                      |+|+..++.+++++|+++|++      ++. +..|.||||+|+..|+.+++++|+++|+      +++.+|..|.||||+
T Consensus       130 ~~A~~~~~~~~v~~Ll~~g~~------~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~d~~g~t~L~~  196 (285)
T 3d9h_A          130 FNACVSGSWDCVNLLLQHGAS------VQP-ESDLASPIHEAARRGHVECVNSLIAYGG------NIDHKISHLGTPLYL  196 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC------SSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTC------CTTCCBTTTBCHHHH
T ss_pred             HHHHHcCHHHHHHHHHHCCCC------CCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHH
Confidence            999999999999999999887      443 4459999999999999999999999997      899999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          169 CNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       169 a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      |+..    ++.+++++|+++|++++.  ...+.++++++.
T Consensus       197 A~~~----~~~~~v~~Ll~~ga~~~~--~~~g~t~L~~A~  230 (285)
T 3d9h_A          197 ACEN----QQRACVKKLLESGADVNQ--GKGQDSPLHAVV  230 (285)
T ss_dssp             HHHT----TCHHHHHHHHHTTCCTTC--CBTTBCHHHHHH
T ss_pred             HHHc----CcHHHHHHHHHCCCCCCC--CCCCCCHHHHHH
Confidence            9988    789999999999999884  333445776554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.1e-32  Score=218.96  Aligned_cols=184  Identities=17%  Similarity=0.180  Sum_probs=139.8

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAV   92 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~   92 (248)
                      +..|.|+||.|+..|+.++++.|++.+.++ +..+..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHH
Confidence            345667777777777777777777777666 56677777777777777777777777776 3446666777777777777


Q ss_pred             HcCChHHHHHHHHHHhccccc------------------------------------------------------ccccc
Q 037085           93 KKSRSDAFQALVDEAKSHRKE------------------------------------------------------HLFTW  118 (248)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~------------------------------------------------------~~~~~  118 (248)
                      ..|+.+++++|+++|+++...                                                      .....
T Consensus       115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence            777777777777766553200                                                      00112


Q ss_pred             ccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCC
Q 037085          119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPD  198 (248)
Q Consensus       119 ~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  198 (248)
                      .+..|.||||+|+..|+.+++++|+++|+      +++.+|..|.||||+|+..    ++.+++++|+++|++++.....
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------d~~~~d~~g~tpL~~A~~~----~~~~~v~~Ll~~gad~~~~d~~  264 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARY------DVNIKDYDGWTPLHAAAHW----GKEEACRILVENLCDMEAVNKV  264 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTC------CTTCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCCTTCCCTT
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCC------CCCCcCCCCCcHHHHHHhc----CCHHHHHHHHHcCCCCCCcCCC
Confidence            44678999999999999999999999997      8999999999999999988    7899999999999999888776


Q ss_pred             CCCcccccccc
Q 037085          199 AGSANVSWNQT  209 (248)
Q Consensus       199 ~~~~~~~~~~~  209 (248)
                      +.+ |++.+..
T Consensus       265 g~t-~l~~A~~  274 (299)
T 1s70_B          265 GQT-AFDVADE  274 (299)
T ss_dssp             SCC-TTTSCCS
T ss_pred             CCC-HHHHHHH
Confidence            665 8877653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.3e-32  Score=228.08  Aligned_cols=184  Identities=21%  Similarity=0.210  Sum_probs=119.0

Q ss_pred             hhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhC---chhhhh-------
Q 037085           10 SIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSIC---PESLEK-------   79 (248)
Q Consensus        10 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~---~~~~~~-------   79 (248)
                      +..|..|.||||+|+..|+.+++++|++.+.+.   .+..|.||||+|+..|+.+++++|++.+   +..++.       
T Consensus        47 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  123 (364)
T 3ljn_A           47 TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE  123 (364)
T ss_dssp             TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcch
Confidence            444555555555555555555555555555533   1224455555555555555555555541   111222       


Q ss_pred             ----------hccCCCcHHHHHHHcC--ChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085           80 ----------LTSNGETALHLAVKKS--RSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus        80 ----------~~~~g~t~lh~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                                .+..|.||||+|+..|  +.+++++|+++|++      ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       124 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~  197 (364)
T 3ljn_A          124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS------PTAKDKADETPLMRAMEFRNREALDLMMDTVP  197 (364)
T ss_dssp             CCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred             HhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                      5667788888888888  78888888888777      77777888888888888888888888888776


Q ss_pred             cccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          148 NRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       148 ~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      +.. .++++..|..|.||||+|+..    ++.+++++|+++|++++.....+.+ |++++.
T Consensus       198 ~~~-~~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~gad~~~~d~~g~t-pL~~A~  252 (364)
T 3ljn_A          198 SKS-SLRLDYANKQGNSHLHWAILI----NWEDVAMRFVEMGIDVNMEDNEHTV-PLYLSV  252 (364)
T ss_dssp             CSS-SCCTTCCCTTCCCTTHHHHTT----TCHHHHHHHHTTTCCTTCCCTTSCC-HHHHHH
T ss_pred             ccc-cccccccCCCCCcHHHHHHHc----CCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHH
Confidence            211 123777788888888888766    6778888888888887766655544 665444

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.3e-32  Score=217.95  Aligned_cols=171  Identities=16%  Similarity=0.157  Sum_probs=146.3

Q ss_pred             hhccCCCCHHHHHHhC---CCHHHHHHHHhcCcchh------h----hhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhh
Q 037085           11 IKNQRGETTMHLLSTD---GDARMVRIFGENNRELC------L----EVDNSLMIPLHRAALEGDSDVIRALVSICPESL   77 (248)
Q Consensus        11 ~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~------~----~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~   77 (248)
                      ..|..|.||||+|+..   |+.+++++|++.+++..      +    ..|..|.||||+|+..|+.+++++|++.+ .++
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-a~~  127 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG-ADV  127 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCT
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCC-CCc
Confidence            3478999999999987   99999999999986531      1    14668999999999999999999999985 457


Q ss_pred             hhhcc--------------CCCcHHHHHHHcCChHHHHHHHH---HHhccccccccccccCCCCcHhHHHHhCCc-----
Q 037085           78 EKLTS--------------NGETALHLAVKKSRSDAFQALVD---EAKSHRKEHLFTWKDKEGNTVLHLATLNKL-----  135 (248)
Q Consensus        78 ~~~~~--------------~g~t~lh~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~-----  135 (248)
                      +.++.              .|.||||+|+..|+.+++++|++   +|++      ++.+|..|+||||+|+..++     
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad------~~~~d~~g~tpLh~A~~~~~~~~~~  201 (273)
T 2pnn_A          128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD------ISARDSVGNTVLHALVEVADNTVDN  201 (273)
T ss_dssp             TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC------TTCCCTTSCCHHHHHHHHCCSCHHH
T ss_pred             CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC------ceeeCCCCCcHHHHHHHccCcchhH
Confidence            77776              79999999999999999999999   8888      89999999999999999887     


Q ss_pred             ----HHHHHHHHhhccccccccccc-------ccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhh-hcCCCCCC
Q 037085          136 ----KQIVELLIRENSNRRIMIRIN-------TVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVA-QQSPQLPD  198 (248)
Q Consensus       136 ----~~~v~~Ll~~g~~~~~~~~~~-------~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~-~~~~~~~~  198 (248)
                          .+++++|+++|+      +++       .+|..|+||||+|+..    ++.+++++|+++|+ ++....+.
T Consensus       202 ~~~~~~~v~~Ll~~ga------~~n~~~~~~~~~d~~g~TpL~~A~~~----g~~~iv~~Ll~~ga~dp~~~~~~  266 (273)
T 2pnn_A          202 TKFVTSMYNEILILGA------KLHPTLKLEEITNRKGLTPLALAASS----GKIGVLAYILQREIHEPECRHAA  266 (273)
T ss_dssp             HHHHHHHHHHHHHHHH------HHCTTCCGGGCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHHHhhh------hcccccccccccCCCCCCHHHHHHHh----ChHHHHHHHHHCCCCCchhhhhh
Confidence                799999999998      665       5899999999999988    78999999999999 55554443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.98  E-value=7.2e-33  Score=204.66  Aligned_cols=162  Identities=20%  Similarity=0.227  Sum_probs=145.9

Q ss_pred             hhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 037085           11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHL   90 (248)
Q Consensus        11 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~   90 (248)
                      ..|.+|.|+||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~   81 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHN   81 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCccCCCCCCHHHH
Confidence            457889999999999999999999999776555778889999999999999999999999984 5588899999999999


Q ss_pred             HHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHH
Q 037085           91 AVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCN  170 (248)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~  170 (248)
                      |+..++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +++.+|..|.||+++|.
T Consensus        82 A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~a~  149 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAV------VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA------DPTKKNRDGNTPLDLVK  149 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCTGGGSC
T ss_pred             HHHcCcHHHHHHHHhCCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCcccCCCCCChhHhHh
Confidence            9999999999999999988      88999999999999999999999999999998      89999999999999975


Q ss_pred             HcCCCchHHHHHHHHHHhhh
Q 037085          171 ANSQDSVFKEIGWIIQRAVA  190 (248)
Q Consensus       171 ~~~~~~~~~~i~~~L~~~g~  190 (248)
                      .     ++.+++++|++.|+
T Consensus       150 ~-----~~~~i~~~L~~~gA  164 (165)
T 3twr_A          150 D-----GDTDIQDLLRGDAA  164 (165)
T ss_dssp             T-----TCHHHHHHHHTC--
T ss_pred             c-----CChHHHHHHhhccc
Confidence            4     46799999998886

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=3.4e-32  Score=217.49  Aligned_cols=165  Identities=22%  Similarity=0.289  Sum_probs=152.8

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHH-----HhCCHHHHHHHHHhCchhhhhhcc
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAA-----LEGDSDVIRALVSICPESLEKLTS   82 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~-----~~g~~~~~~~Ll~~~~~~~~~~~~   82 (248)
                      .++..|.+|.||||+|+..|+.+++++|++.+....+..+..|.||||+|+     ..++.+++++|++.+ ...+..+.
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g-~~~~~~~~  181 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG-NINAKASQ  181 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHS-CTTCCCTT
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcC-CCccccCC
Confidence            467889999999999999999999999999998444889999999999999     678999999999985 55677888


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHh-hcccccccccccccCCC
Q 037085           83 NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR-ENSNRRIMIRINTVNKQ  161 (248)
Q Consensus        83 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~  161 (248)
                      .|.||||+|+..|+.+++++|+++|++      ++.+|..|+||||+|+..|+.+++++|++ .|+      +++.+|..
T Consensus       182 ~g~tpLh~A~~~g~~~~v~~Ll~~gad------~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~ga------d~~~~d~~  249 (276)
T 4hbd_A          182 AGQTALMLAVSHGRVDVVKALLACEAD------VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSC------DISLTDRD  249 (276)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTC------CTTCCCTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCC------CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC------CCcCcCCC
Confidence            999999999999999999999999998      89999999999999999999999999999 787      89999999


Q ss_pred             CCCHHHHHHHcCCCchHHHHHHHHHHhh
Q 037085          162 GQTALQLCNANSQDSVFKEIGWIIQRAV  189 (248)
Q Consensus       162 g~tpl~~a~~~~~~~~~~~i~~~L~~~g  189 (248)
                      |+|||++|+..    ++.+++++|++++
T Consensus       250 g~TpL~~A~~~----g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          250 GSTALMVALDA----GQSEIASMLYSRM  273 (276)
T ss_dssp             SCCHHHHHHHH----TCHHHHHHHHHHC
T ss_pred             CCCHHHHHHHc----CCHHHHHHHHhcc
Confidence            99999999988    7899999999874

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.98  E-value=2e-31  Score=212.81  Aligned_cols=190  Identities=16%  Similarity=0.167  Sum_probs=163.8

Q ss_pred             cCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccC
Q 037085            4 LWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSN   83 (248)
Q Consensus         4 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~   83 (248)
                      ..++.....+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.+ ..++..+..
T Consensus        27 ~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~  104 (285)
T 1wdy_A           27 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKG-ADVNECDFY  104 (285)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTT
T ss_pred             cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCcc
Confidence            333333334788999999999999999999999999988 778999999999999999999999999984 457888999


Q ss_pred             CCcHHHHHHHcCChHHHHHHHHHHhccccccccccc----------cCCCCcHhHHHHhCCcHHHHHHHHhh-ccccccc
Q 037085           84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWK----------DKEGNTVLHLATLNKLKQIVELLIRE-NSNRRIM  152 (248)
Q Consensus        84 g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~----------~~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~  152 (248)
                      |.||||+|+..++.+++++|+++|++      ++..          +..|.||||+|+..|+.+++++|++. |+     
T Consensus       105 g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-----  173 (285)
T 1wdy_A          105 GFTAFMEAAVYGKVKALKFLYKRGAN------VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA-----  173 (285)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCC------TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC-----
T ss_pred             cCCHHHHHHHhCCHHHHHHHHHhCCC------cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCC-----
Confidence            99999999999999999999999887      4444          78899999999999999999999987 76     


Q ss_pred             ccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          153 IRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       153 ~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                       +++..+..|.||||+|+..+......+++++|+++|++++.....+.+ |++++.
T Consensus       174 -~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t-~L~~A~  227 (285)
T 1wdy_A          174 -DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT-PLILAV  227 (285)
T ss_dssp             -CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC-HHHHHH
T ss_pred             -CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCc-HHHHHH
Confidence             788899999999999998876666689999999999998887766554 666544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=2e-32  Score=216.63  Aligned_cols=168  Identities=18%  Similarity=0.173  Sum_probs=147.4

Q ss_pred             ccCCCCHHHHHH---hCCCHHHHHHHHhcCcch----------hhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhh
Q 037085           13 NQRGETTMHLLS---TDGDARMVRIFGENNREL----------CLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEK   79 (248)
Q Consensus        13 ~~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~----------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~   79 (248)
                      +..|.||||+|+   ..|+.+++++|++.+.+.          ....|..|.||||+|+..|+.+++++|++.+ .+++.
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~  121 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG-ADVHA  121 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCC-CCcCc
Confidence            377999999999   779999999999987642          1233458999999999999999999999985 45777


Q ss_pred             hc--------------cCCCcHHHHHHHcCChHHHHHHHH---HHhccccccccccccCCCCcHhHHHHhCCc-------
Q 037085           80 LT--------------SNGETALHLAVKKSRSDAFQALVD---EAKSHRKEHLFTWKDKEGNTVLHLATLNKL-------  135 (248)
Q Consensus        80 ~~--------------~~g~t~lh~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~-------  135 (248)
                      .+              ..|.||||+|+..|+.+++++|++   +|++      ++.+|..|+||||+|+..++       
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~------~~~~d~~g~TpLh~A~~~~~~~~~~~~  195 (260)
T 3jxi_A          122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD------LRRQDSRGNTVLHALVAIADNTRENTK  195 (260)
T ss_dssp             CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC------TTCCCTTSCCHHHHHHHHCCSSHHHHH
T ss_pred             cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC------CcccCCCCCcHHHHHHHhccCchhHHH
Confidence            77              579999999999999999999999   8887      89999999999999998777       


Q ss_pred             --HHHHHHHHhhcccccccccc-------cccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCC
Q 037085          136 --KQIVELLIRENSNRRIMIRI-------NTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLP  197 (248)
Q Consensus       136 --~~~v~~Ll~~g~~~~~~~~~-------~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~  197 (248)
                        .+++++|+++|+      ++       +.+|..|+||||+|+..    ++.+++++|+++|++..+..+
T Consensus       196 ~~~~~v~~Ll~~ga------~~~~~~~~~~~~d~~g~tpL~~A~~~----g~~~~v~~Ll~~g~~~~~~~~  256 (260)
T 3jxi_A          196 FVTKMYDLLLIKCA------KLFPDTNLEALLNNDGLSPLMMAAKT----GKIGIFQHIIRREIADAAAHH  256 (260)
T ss_dssp             HHHHHHHHHHHHHH------HHCTTCCGGGCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhCc------ccccccchhhcccCCCCCHHHHHHHc----CCHHHHHHHHHhCCCcccccc
Confidence              799999999998      56       78999999999999988    789999999999999877544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.98  E-value=4.1e-32  Score=225.91  Aligned_cols=193  Identities=18%  Similarity=0.159  Sum_probs=166.8

Q ss_pred             chhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCc--hhhhhhccC
Q 037085            6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICP--ESLEKLTSN   83 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~--~~~~~~~~~   83 (248)
                      +..++..|..|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..|+.+++++|++.+.  ..++..|..
T Consensus       156 ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~  234 (373)
T 2fo1_E          156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN  234 (373)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT
T ss_pred             CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCC
Confidence            3345678899999999999999999999999999998 7889999999999999999999999998742  467888999


Q ss_pred             CCcHHHHHHHcC---ChHHHHHHHHHHhccccc--cccccccCCCCcHhHHHHhCCcHHHHHHHHhhccccccccccccc
Q 037085           84 GETALHLAVKKS---RSDAFQALVDEAKSHRKE--HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV  158 (248)
Q Consensus        84 g~t~lh~a~~~~---~~~~~~~Ll~~~~~~~~~--~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  158 (248)
                      |.||||+|+..+   +.+++++|+++|++....  ...+..|..|.||||+|+..|+.+++++|++++.     .+++.+
T Consensus       235 g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-----~~~n~~  309 (373)
T 2fo1_E          235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG-----SNKDKQ  309 (373)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC-----CCTTCC
T ss_pred             CCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC-----CCccCc
Confidence            999999999988   899999999999883211  0122367799999999999999999999998873     289999


Q ss_pred             CCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccccc
Q 037085          159 NKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQT  209 (248)
Q Consensus       159 ~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~  209 (248)
                      |..|.||||+|+..    ++.+++++|+++|++++.....+.+ +++++..
T Consensus       310 d~~g~TpL~~A~~~----g~~~iv~~Ll~~gad~~~~d~~g~t-~l~~A~~  355 (373)
T 2fo1_E          310 DEDGKTPIMLAAQE----GRIEVVMYLIQQGASVEAVDATDHT-ARQLAQA  355 (373)
T ss_dssp             CTTCCCHHHHHHHH----TCHHHHHHHHHTTCCSSCCCSSSCC-HHHHHHH
T ss_pred             CCCCCCHHHHHHHc----CCHHHHHHHHHcCCCccCCCCCCCC-HHHHHHH
Confidence            99999999999988    7899999999999999888766555 7765543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.98  E-value=4.2e-32  Score=214.40  Aligned_cols=179  Identities=17%  Similarity=0.172  Sum_probs=151.7

Q ss_pred             CCCCHHHHHHhCCCHH----HHHHHHhcCcchhhh----hcCCCCcHHHHHHHh---CCHHHHHHHHHhCchhhh-----
Q 037085           15 RGETTMHLLSTDGDAR----MVRIFGENNRELCLE----VDNSLMIPLHRAALE---GDSDVIRALVSICPESLE-----   78 (248)
Q Consensus        15 ~g~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~-----   78 (248)
                      .|+||||+|+..|+.+    ++++|++.+.++ +.    .|..|.||||+|+..   |+.+++++|++.+.. .+     
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~-~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD-SGNPKPL   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH-TTCSSCG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc-ccchhhh
Confidence            4889999999999997    667777789887 55    799999999999999   999999999998543 33     


Q ss_pred             ------hhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCC-------------CCcHhHHHHhCCcHHHH
Q 037085           79 ------KLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKE-------------GNTVLHLATLNKLKQIV  139 (248)
Q Consensus        79 ------~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~-------------g~t~Lh~A~~~~~~~~v  139 (248)
                            ..|..|.||||+|+..|+.+++++|+++|++      ++.++..             |.||||+|+..|+.+++
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v  152 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD------VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV  152 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC------CCcccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence                  2346799999999999999999999999988      7777765             99999999999999999


Q ss_pred             HHHHh---hcccccccccccccCCCCCCHHHHHHHcCCCchHHH-------HHHHHHHhhhhc-------CCCCCCCCCc
Q 037085          140 ELLIR---ENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKE-------IGWIIQRAVAQQ-------SPQLPDAGSA  202 (248)
Q Consensus       140 ~~Ll~---~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~-------i~~~L~~~g~~~-------~~~~~~~~~~  202 (248)
                      ++|++   +|+      +++.+|..|+||||+|+..+.  +..+       ++++|+++|+++       +.+...+.+ 
T Consensus       153 ~~Ll~~~~~ga------~~n~~d~~g~TpLh~A~~~~~--~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~t-  223 (256)
T 2etb_A          153 TYLLENPHQPA------SLEATDSLGNTVLHALVMIAD--NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT-  223 (256)
T ss_dssp             HHHHHCSSCCC------CTTCCCTTSCCHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCC-
T ss_pred             HHHHhccccCC------CcCccCCCCCCHHHHHHHccc--CCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCC-
Confidence            99999   887      899999999999999998422  3445       999999999999       555554444 


Q ss_pred             cccccccC
Q 037085          203 NVSWNQTR  210 (248)
Q Consensus       203 ~~~~~~~~  210 (248)
                      |++++...
T Consensus       224 pL~~A~~~  231 (256)
T 2etb_A          224 PLKLAAKE  231 (256)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            77766543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-31  Score=226.65  Aligned_cols=180  Identities=18%  Similarity=0.226  Sum_probs=152.2

Q ss_pred             hhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHH
Q 037085           10 SIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALH   89 (248)
Q Consensus        10 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh   89 (248)
                      +..+..|.||||+|+..|+.++++.|++.+.++ +..+..|.||||+|+..|+.+++++|++.+ ...+..+..|.||||
T Consensus       206 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~  283 (437)
T 1n11_A          206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLH  283 (437)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcC-CCCCCCCCCCCCHHH
Confidence            345566778888888888888888888877776 667778888888888888888888888874 446777888999999


Q ss_pred             HHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHH
Q 037085           90 LAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC  169 (248)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a  169 (248)
                      +|+..++.+++++|+++|++      ++.+|..|.||||+|+..|+.+++++|+++|+      +++.+|..|+||||+|
T Consensus       284 ~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga------d~n~~~~~g~t~L~~A  351 (437)
T 1n11_A          284 LVAQEGHVPVADVLIKHGVM------VDATTRMGYTPLHVASHYGNIKLVKFLLQHQA------DVNAKTKLGYSPLHQA  351 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC------TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC------CTTCCCTTSCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCcc------CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC------CCCCCCCCCCCHHHHH
Confidence            99999999999999998887      88899999999999999999999999999998      8999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          170 NANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       170 ~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      +..    ++.+++++|+++|++++....++.+ |++.+.
T Consensus       352 ~~~----g~~~iv~~Ll~~ga~~~~~~~~g~t-~l~~A~  385 (437)
T 1n11_A          352 AQQ----GHTDIVTLLLKNGASPNEVSSDGTT-PLAIAK  385 (437)
T ss_dssp             HHT----TCHHHHHHHHHTTCCSCCCCSSSCC-HHHHHH
T ss_pred             HHC----ChHHHHHHHHHCcCCCCCCCCCCCC-HHHHHH
Confidence            988    7889999999999999887776655 665543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.3e-31  Score=195.52  Aligned_cols=151  Identities=25%  Similarity=0.261  Sum_probs=140.8

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcC
Q 037085           16 GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKS   95 (248)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~   95 (248)
                      ..++||.|+..|+.+++++|++.+.+. . .+..|.||||+|+..|+.+++++|++.+ ..++.++..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC
Confidence            468999999999999999999999876 2 5889999999999999999999999984 557888999999999999999


Q ss_pred             ChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCC
Q 037085           96 RSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQD  175 (248)
Q Consensus        96 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~  175 (248)
                      +.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +++.+|..|.||+++|+..   
T Consensus        79 ~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~~~---  143 (153)
T 1awc_B           79 HANIVEVLLKHGAD------VNAKDMLKMTALHWATEHNHQEVVELLIKYGA------DVHTQSKFCKTAFDISIDN---  143 (153)
T ss_dssp             CHHHHHHHHTTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHT---
T ss_pred             hHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CccccCCCCCCHHHHHHHc---
Confidence            99999999999888      88999999999999999999999999999998      8999999999999999988   


Q ss_pred             chHHHHHHHH
Q 037085          176 SVFKEIGWII  185 (248)
Q Consensus       176 ~~~~~i~~~L  185 (248)
                       ++.+++++|
T Consensus       144 -~~~~i~~~L  152 (153)
T 1awc_B          144 -GNEDLAEIL  152 (153)
T ss_dssp             -TCHHHHHHH
T ss_pred             -CCHHHHHHh
Confidence             778888876

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=4.1e-31  Score=211.06  Aligned_cols=182  Identities=19%  Similarity=0.242  Sum_probs=119.7

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhh--------
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKL--------   80 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~--------   80 (248)
                      .+..+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..|+.+++++|++.+.. ++..        
T Consensus        65 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~  142 (285)
T 1wdy_A           65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQE  142 (285)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-cccccccHHHHH
Confidence            4455667777777777777777777777777766 56667777777777777777777777776432 3332        


Q ss_pred             --ccCCCcHHHHHHHcCChHHHHHHHHH-HhccccccccccccCCCCcHhHHHHhCCc----HHHHHHHHhhcccccccc
Q 037085           81 --TSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHLATLNKL----KQIVELLIRENSNRRIMI  153 (248)
Q Consensus        81 --~~~g~t~lh~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~----~~~v~~Ll~~g~~~~~~~  153 (248)
                        +..|.||||+|+..++.+++++|++. +.+      ++..|..|.||||+|+..++    .+++++|+++|+      
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~------  210 (285)
T 1wdy_A          143 RLRKGGATALMDAAEKGHVEVLKILLDEMGAD------VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA------  210 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC------TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC------
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC------CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCC------
Confidence              55667777777777777777777765 555      56666666666666666666    666666666665      


Q ss_pred             cccccCCCCCCHHHHHHHcCCCchHHHHHHHHHH-hhhhcCCCCCCCCCcccccccc
Q 037085          154 RINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR-AVAQQSPQLPDAGSANVSWNQT  209 (248)
Q Consensus       154 ~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~-~g~~~~~~~~~~~~~~~~~~~~  209 (248)
                      +++.+|..|.||||+|+..    ++.+++++|++ .|++++.....+.+ |++.+..
T Consensus       211 ~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~~g~~~~~~~~~g~t-~l~~A~~  262 (285)
T 1wdy_A          211 DVNVRGERGKTPLILAVEK----KHLGLVQRLLEQEHIEINDTDSDGKT-ALLLAVE  262 (285)
T ss_dssp             CSSCCCTTSCCHHHHHHHT----TCHHHHHHHHHSSSCCTTCCCTTSCC-HHHHHHH
T ss_pred             CCCCcCCCCCcHHHHHHHc----CCHHHHHHHHhccCCCccccCCCCCc-HHHHHHH
Confidence            5666666666666666665    55666666666 66666655554443 5554443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=5.7e-32  Score=215.64  Aligned_cols=202  Identities=16%  Similarity=0.181  Sum_probs=158.0

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHhc----Ccchh---hhhcCCCCcHHHHHHHh---CCHHHHHHHHHhCchh-
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGEN----NRELC---LEVDNSLMIPLHRAALE---GDSDVIRALVSICPES-   76 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~---~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~-   76 (248)
                      .....|..|.||||+|+..|+.++++.|++.    +..+.   ...+..|.||||+|+..   |+.+++++|++.+... 
T Consensus         5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~   84 (273)
T 2pnn_A            5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD   84 (273)
T ss_dssp             ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred             cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc
Confidence            3456789999999999999999999988874    33331   24588999999999987   9999999999985421 


Q ss_pred             -----hhh----hccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccC--------------CCCcHhHHHHhC
Q 037085           77 -----LEK----LTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDK--------------EGNTVLHLATLN  133 (248)
Q Consensus        77 -----~~~----~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~--------------~g~t~Lh~A~~~  133 (248)
                           ++.    .|..|.||||+|+..|+.+++++|+++|++      ++.++.              .|.||||+|+..
T Consensus        85 ~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  158 (273)
T 2pnn_A           85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD------VQAAANGDFFKKTKGRPGFYFGELPLSLAACT  158 (273)
T ss_dssp             CHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT
T ss_pred             chhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC------cCccccccccccccccccccCCCCHHHHHHHc
Confidence                 222    566899999999999999999999999988      777776              799999999999


Q ss_pred             CcHHHHHHHHh---hcccccccccccccCCCCCCHHHHHHHcCCCch-----HHHHHHHHHHhhhhcCC-------CCCC
Q 037085          134 KLKQIVELLIR---ENSNRRIMIRINTVNKQGQTALQLCNANSQDSV-----FKEIGWIIQRAVAQQSP-------QLPD  198 (248)
Q Consensus       134 ~~~~~v~~Ll~---~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~-----~~~i~~~L~~~g~~~~~-------~~~~  198 (248)
                      |+.+++++|++   +|+      +++.+|..|+||||+|+..+....     ..+++++|+++|++++.       ....
T Consensus       159 g~~~~v~~Ll~~~~~ga------d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~  232 (273)
T 2pnn_A          159 NQLAIVKFLLQNSWQPA------DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK  232 (273)
T ss_dssp             TCHHHHHHHHHCSSCCC------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT
T ss_pred             CCHHHHHHHHhcccCCC------CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCC
Confidence            99999999999   787      899999999999999998643211     16899999999999985       3333


Q ss_pred             CCCccccccccCCchhhhhhHHHHHHHHHH
Q 037085          199 AGSANVSWNQTRWPIETRNVLLMVVVTIAA  228 (248)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  228 (248)
                       +.+|++++....      ...++..|+..
T Consensus       233 -g~TpL~~A~~~g------~~~iv~~Ll~~  255 (273)
T 2pnn_A          233 -GLTPLALAASSG------KIGVLAYILQR  255 (273)
T ss_dssp             -SCCHHHHHHHTT------CHHHHHHHHHH
T ss_pred             -CCCHHHHHHHhC------hHHHHHHHHHC
Confidence             444887665332      34455555443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=6.5e-31  Score=222.79  Aligned_cols=179  Identities=17%  Similarity=0.205  Sum_probs=144.1

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcH
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETA   87 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~   87 (248)
                      .++..+..|.||||+|+..|+.++|++|++++.++ +..+..|.||||+|+..|+.+++++|++.+ ..++.++..|.||
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~   83 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNK-AKVNAKAKDDQTP   83 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTSCCH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCH
Confidence            45677888999999999999999999999999887 678889999999999999999999999984 4578888899999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHH
Q 037085           88 LHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQ  167 (248)
Q Consensus        88 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~  167 (248)
                      ||+|+..|+.+++++|+++|++      ++..+..|.||||+|+..|+.+++++|++.++      +.+..+..|.||||
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~------~~~~~~~~g~t~L~  151 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNAN------PNLATTAGHTPLHIAAREGHVETVLALLEKEA------SQACMTKKGFTPLH  151 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CSCCCCTTSCCHHH
T ss_pred             HHHHHHCCCHHHHHHHHhCCCC------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC------CCcCCCCCCCCHHH
Confidence            9999999999999999999887      77788888888888888888888888888876      66777778888888


Q ss_pred             HHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccc
Q 037085          168 LCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVS  205 (248)
Q Consensus       168 ~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~  205 (248)
                      +|+..    ++.+++++|+++|++++.....+.+ +++
T Consensus       152 ~A~~~----g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~  184 (437)
T 1n11_A          152 VAAKY----GKVRVAELLLERDAHPNAAGKNGLT-PLH  184 (437)
T ss_dssp             HHHHT----TCHHHHHHHHHTTCCTTCCCSSCCC-HHH
T ss_pred             HHHHc----CCHHHHHHHHhCCCCCCCCCCCCCC-HHH
Confidence            88877    6778888888888877766554443 444

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=3.4e-31  Score=216.65  Aligned_cols=181  Identities=19%  Similarity=0.092  Sum_probs=147.7

Q ss_pred             hHhh-hccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCC---HHHHHHHHHhCchhhhhhccC
Q 037085            8 LASI-KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGD---SDVIRALVSICPESLEKLTSN   83 (248)
Q Consensus         8 ~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~~~~Ll~~~~~~~~~~~~~   83 (248)
                      .++. .|..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+..|+   .++++.|++.+...++.+|..
T Consensus       122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~  200 (327)
T 1sw6_A          122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM  200 (327)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence            3455 7899999999999999999999999999998 7899999999999999998   788888888865678899999


Q ss_pred             CCcHHHHHHH----cCChHHHHHHHHHHhccc--------------cccccccccCCCCcHhHHHHhCCcHHHHHHHHhh
Q 037085           84 GETALHLAVK----KSRSDAFQALVDEAKSHR--------------KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRE  145 (248)
Q Consensus        84 g~t~lh~a~~----~~~~~~~~~Ll~~~~~~~--------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  145 (248)
                      |.||||+|+.    .|+.+++++|++.+....              ....++.++..|.||||+|+.      +++|+++
T Consensus       201 g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~  274 (327)
T 1sw6_A          201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN  274 (327)
T ss_dssp             CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH
T ss_pred             CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh
Confidence            9999999999    899999999998843110              022378899999999999985      8889886


Q ss_pred             cccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          146 NSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       146 g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                              +++.+|..|+||||+|+..    ++.+++++|+++|++++.+...+.+ |++++.
T Consensus       275 --------~~n~~d~~G~TpLh~A~~~----g~~~~v~~Ll~~Gad~~~~d~~G~T-pL~~A~  324 (327)
T 1sw6_A          275 --------MLNAQDSNGDTCLNIAARL----GNISIVDALLDYGADPFIANKSGLR-PVDFGA  324 (327)
T ss_dssp             --------TTTCCCTTSCCHHHHHHHH----CCHHHHHHHHHTTCCTTCCCTTSCC-GGGGTC
T ss_pred             --------CCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCcccCCCCCC-HHHHHH
Confidence                    4788999999999999988    7889999999999999988877665 877654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=3.7e-31  Score=193.58  Aligned_cols=154  Identities=19%  Similarity=0.204  Sum_probs=141.4

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcC
Q 037085           16 GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKS   95 (248)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~   95 (248)
                      +.|+||.|+..|+.++++.|++......+..+..|.||||+ +..|+.+++++|++.+ .+++.+|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQG-ASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcC
Confidence            56899999999999999999999332337789999999999 9999999999999984 558889999999999999999


Q ss_pred             ChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCC
Q 037085           96 RSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQD  175 (248)
Q Consensus        96 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~  175 (248)
                      +.+++++|+++|++      ++.+|..|.||||+|+..|+.+++++|++. +      +++.+|..|.|||++|+..   
T Consensus        80 ~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~------~~~~~~~~g~t~l~~A~~~---  143 (156)
T 1bd8_A           80 FLDTLKVLVEHGAD------VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S------DLHRRDARGLTPLELALQR---  143 (156)
T ss_dssp             CHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S------CTTCCCTTSCCHHHHHHHS---
T ss_pred             cHHHHHHHHHcCCC------CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c------CCCCcCCCCCCHHHHHHHc---
Confidence            99999999999988      889999999999999999999999999998 6      7899999999999999988   


Q ss_pred             chHHHHHHHHHHh
Q 037085          176 SVFKEIGWIIQRA  188 (248)
Q Consensus       176 ~~~~~i~~~L~~~  188 (248)
                       ++.+++++|+++
T Consensus       144 -~~~~~v~~Ll~~  155 (156)
T 1bd8_A          144 -GAQDLVDILQGH  155 (156)
T ss_dssp             -CCHHHHHHHHTT
T ss_pred             -CcHHHHHHHHhh
Confidence             788999999864

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=4e-31  Score=212.22  Aligned_cols=162  Identities=18%  Similarity=0.084  Sum_probs=149.8

Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCC-CcHHHHHHH
Q 037085           15 RGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNG-ETALHLAVK   93 (248)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g-~t~lh~a~~   93 (248)
                      +|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..|+.+++++|++. +.+++.++..| .||||+|+.
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~  138 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVM  138 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHH
Confidence            5999999999999999999999999998 77899999999999999999999999999 55688889999 899999999


Q ss_pred             cCChHHHHHHHHHHhccccccccccccC-CCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCH-HHHHHH
Q 037085           94 KSRSDAFQALVDEAKSHRKEHLFTWKDK-EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTA-LQLCNA  171 (248)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~a~~  171 (248)
                      .|+.+++++|+++|++      .  .+. .|.||||+|+..|+.+++++|+++|+      +++.+|..|+|| ||+|+.
T Consensus       139 ~~~~~~v~~Ll~~g~~------~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga------d~n~~~~~g~t~~L~~A~~  204 (285)
T 3kea_A          139 LNDVSIVSYFLSEIPS------T--FDLAILLSCIHITIKNGHVDMMILLLDYMT------STNTNNSLLFIPDIKLAID  204 (285)
T ss_dssp             TTCHHHHHHHHTTSCT------T--CCCSTHHHHHHHHHHTTCHHHHHHHHHHHH------HTCTTCCCBCCTTHHHHHH
T ss_pred             cCCHHHHHHHHhCCCc------c--ccccCCccHHHHHHHcChHHHHHHHHHcCC------CCCcccCCCCChHHHHHHH
Confidence            9999999999999865      2  233 89999999999999999999999998      899999999998 999998


Q ss_pred             cCCCchHHHHHHHHHHhhhhcCCCC
Q 037085          172 NSQDSVFKEIGWIIQRAVAQQSPQL  196 (248)
Q Consensus       172 ~~~~~~~~~i~~~L~~~g~~~~~~~  196 (248)
                      .    ++.+++++|+++|++++...
T Consensus       205 ~----~~~~~v~~Ll~~gad~~~~~  225 (285)
T 3kea_A          205 N----KDIEMLQALFKYDINIYSAN  225 (285)
T ss_dssp             H----TCHHHHHHHTTSCBCSTTTT
T ss_pred             c----CCHHHHHHHHHcCCCCCCCC
Confidence            7    78999999999999988765

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=202.95  Aligned_cols=181  Identities=17%  Similarity=0.172  Sum_probs=116.2

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      ++..+..|.||||+|+..|+.+++++|++.+.+.....+..|.||||+|+..|+.+++++|++. +..++..+..|.|||
T Consensus        35 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l  113 (240)
T 3eu9_A           35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCI  113 (240)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHH
Confidence            3445566666666666666666666666666665444444566666666666666666666665 333555566666666


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCc-HHHHHHHHhhcccccccccccccCC-CCCCHH
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKL-KQIVELLIRENSNRRIMIRINTVNK-QGQTAL  166 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~-~~~v~~Ll~~g~~~~~~~~~~~~~~-~g~tpl  166 (248)
                      |+|+..++.+++++|+++|++      ++.++..|.||||+|+..++ .+++++|++.|+      +++..+. .|.|||
T Consensus       114 ~~A~~~~~~~~~~~Ll~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~------~~~~~~~~~g~t~L  181 (240)
T 3eu9_A          114 HLAAQFGHTSIVAYLIAKGQD------VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV------SVNLGDKYHKNTAL  181 (240)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTC------CTTCCCTTTCCCHH
T ss_pred             HHHHHcCHHHHHHHHHhcCCC------ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCC------CcchhhccCCCcHH
Confidence            666666666666666666655      56666666666666664443 566666666665      5666665 677777


Q ss_pred             HHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccc
Q 037085          167 QLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       167 ~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                      |+|+..    +..+++++|+++|++++.....+.+ |++.+
T Consensus       182 ~~A~~~----~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A  217 (240)
T 3eu9_A          182 HWAVLA----GNTTVISLLLEAGANVDAQNIKGES-ALDLA  217 (240)
T ss_dssp             HHHHHH----TCHHHHHHHHHHTCCTTCBCTTSCB-HHHHH
T ss_pred             HHHHHc----CCHHHHHHHHHcCCCCCCcCCCCCC-HHHHH
Confidence            777766    5677777777777777666554443 55444

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=9.7e-31  Score=193.92  Aligned_cols=133  Identities=23%  Similarity=0.391  Sum_probs=124.7

Q ss_pred             hhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCc
Q 037085            7 QLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGET   86 (248)
Q Consensus         7 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t   86 (248)
                      ..++.+|.+|.||||+|+..++.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.+ .+++.+|..|+|
T Consensus        28 advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-advn~~d~~G~T  105 (169)
T 4gpm_A           28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRT  105 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCC
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCCCCCCCC
Confidence            346788999999999999999999999999999998 889999999999999999999999999985 568899999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085           87 ALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus        87 ~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                      |||+|+..|+.+++++|+++|++      ++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       106 pLh~A~~~g~~~~v~~Ll~~gad------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A          106 PLHHAAENGHKEVVKLLISKGAD------VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            99999999999999999999988      88999999999999999999999999999999

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=3.6e-30  Score=211.22  Aligned_cols=186  Identities=17%  Similarity=0.153  Sum_probs=153.9

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhc-CCCCcHHHHHHHhCCHHHHHHHHHhCch----------------
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVD-NSLMIPLHRAALEGDSDVIRALVSICPE----------------   75 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~~~~----------------   75 (248)
                      +.+|.|+||.|+..|+.++|++|+++|+++ +.++ ..|.||||+|+..|+.+++++|++++..                
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadv-n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            445789999999999999999999999998 5454 4699999999999999999999997542                


Q ss_pred             ----------------hhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccc----cccccccCCCCcHhHHHHhCCc
Q 037085           76 ----------------SLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKE----HLFTWKDKEGNTVLHLATLNKL  135 (248)
Q Consensus        76 ----------------~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~----~~~~~~~~~g~t~Lh~A~~~~~  135 (248)
                                      .++..|..|.||||+|+..++.+++++|+++|++....    ......+..|.||||+|+..|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~  180 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  180 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCC
Confidence                            23456788999999999999999999999998874311    1233456789999999999999


Q ss_pred             HHHHHHHHhh-cccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccc
Q 037085          136 KQIVELLIRE-NSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSW  206 (248)
Q Consensus       136 ~~~v~~Ll~~-g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~  206 (248)
                      .+++++|+++ |+      +++.+|..|.||++.++..+.......++++|+++|++++.+...+.+ |+++
T Consensus       181 ~~~v~~LL~~~ga------d~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t-~L~~  245 (337)
T 4g8k_A          181 VEVLKILLDEMGA------DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT-PLIL  245 (337)
T ss_dssp             HHHHHHHHHHSCC------CTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCC-HHHH
T ss_pred             HHHHHHHHhccCC------CcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCC-HHHH
Confidence            9999999964 66      899999999999999888777777788999999999999887765554 6553

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=2.5e-30  Score=212.49  Aligned_cols=133  Identities=17%  Similarity=0.162  Sum_probs=121.0

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      ....+..|.++||.|+..|+.+.++.|+.......+.+|..|.||||+|+..|+.+++++|++.+ .+++.+|..|.|||
T Consensus        17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L   95 (351)
T 3utm_A           17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG-ADVHAKDKGGLVPL   95 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHH
T ss_pred             eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHH
Confidence            45667889999999999999999999998754444788999999999999999999999999984 55888999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccc
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN  148 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  148 (248)
                      |+|+..|+.+++++|+++|++      ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus        96 ~~A~~~g~~~iv~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  149 (351)
T 3utm_A           96 HNACSYGHYEVTELLLKHGAC------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD  149 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHCCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999988      888999999999999999999999999998774

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=7.2e-30  Score=211.53  Aligned_cols=168  Identities=17%  Similarity=0.174  Sum_probs=152.1

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhc----Ccchhhh-----------------hcCCCCcHHHHHHHhC--CHHHHHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGEN----NRELCLE-----------------VDNSLMIPLHRAALEG--DSDVIRAL   69 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~-----------------~~~~g~t~L~~A~~~g--~~~~~~~L   69 (248)
                      +.+|.||||+|+..|+.+++++|++.    +.++ +.                 .+..|.||||+|+..|  +.+++++|
T Consensus        81 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~L  159 (364)
T 3ljn_A           81 LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL  159 (364)
T ss_dssp             CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHH
Confidence            35899999999999999999999998    6665 44                 7889999999999999  99999999


Q ss_pred             HHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccc
Q 037085           70 VSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNR  149 (248)
Q Consensus        70 l~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~  149 (248)
                      ++. +.+++.+|..|.||||+|+..|+.+++++|+++|++. ....++..|..|.||||+|+..|+.+++++|+++|+  
T Consensus       160 l~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--  235 (364)
T 3ljn_A          160 VQL-GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK-SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI--  235 (364)
T ss_dssp             HHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS-SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC--
T ss_pred             HHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccc-ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--
Confidence            999 4568889999999999999999999999999998762 122367889999999999999999999999999998  


Q ss_pred             cccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcC
Q 037085          150 RIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQS  193 (248)
Q Consensus       150 ~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~  193 (248)
                          |++.+|..|.||||+|+..    ++.+++++|+++|++..
T Consensus       236 ----d~~~~d~~g~tpL~~A~~~----g~~~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          236 ----DVNMEDNEHTVPLYLSVRA----AMVLLTKELLQKTDVFL  271 (364)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHT----CCHHHHHHHHHHSCHHH
T ss_pred             ----CCCCCCCCCCCHHHHHHHh----ChHHHHHHHHHcCCchh
Confidence                8999999999999999988    78999999999998863

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=7.8e-31  Score=207.50  Aligned_cols=198  Identities=16%  Similarity=0.194  Sum_probs=156.0

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHh----cCcchhhhh----cCCCCcHHHHHH---HhCCHHHHHHHHHhCchh-----
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGE----NNRELCLEV----DNSLMIPLHRAA---LEGDSDVIRALVSICPES-----   76 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~----~~~g~t~L~~A~---~~g~~~~~~~Ll~~~~~~-----   76 (248)
                      +..|+++||.|+..|+.+.++.|++    .+.++ ...    +..|.||||+|+   ..|+.+++++|++.+...     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            5678999999999999996555554    78776 333    377999999999   679999999999985321     


Q ss_pred             -----hhhhccCCCcHHHHHHHcCChHHHHHHHHHHhcccccccccccc--------------CCCCcHhHHHHhCCcHH
Q 037085           77 -----LEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD--------------KEGNTVLHLATLNKLKQ  137 (248)
Q Consensus        77 -----~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~--------------~~g~t~Lh~A~~~~~~~  137 (248)
                           .+..|..|.||||+|+..|+.+++++|+++|++      ++.++              ..|.||||+|+..|+.+
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  154 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD------VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH  154 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC------cCccccccccCcccccccccCCCCHHHHHHHcCCHH
Confidence                 233455899999999999999999999999988      77777              68999999999999999


Q ss_pred             HHHHHHh---hcccccccccccccCCCCCCHHHHHHHcCCCc-----hHHHHHHHHHHhhhhcCC-------CCCCCCCc
Q 037085          138 IVELLIR---ENSNRRIMIRINTVNKQGQTALQLCNANSQDS-----VFKEIGWIIQRAVAQQSP-------QLPDAGSA  202 (248)
Q Consensus       138 ~v~~Ll~---~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~-----~~~~i~~~L~~~g~~~~~-------~~~~~~~~  202 (248)
                      ++++|++   .|+      +++.+|..|+||||+|+..+...     ...+++++|+++|+++++       ....+ .+
T Consensus       155 ~v~~Ll~~~~~ga------~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g-~t  227 (260)
T 3jxi_A          155 IVHYLTENGHKQA------DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG-LS  227 (260)
T ss_dssp             HHHHHHHCSSCCC------CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS-CC
T ss_pred             HHHHHHhccccCC------CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCC-CC
Confidence            9999999   777      89999999999999999764321     126899999999999954       33333 34


Q ss_pred             cccccccCCchhhhhhHHHHHHHHHHHH
Q 037085          203 NVSWNQTRWPIETRNVLLMVVVTIAAAF  230 (248)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~li~~~~  230 (248)
                      |++++...      +...++..|+.-..
T Consensus       228 pL~~A~~~------g~~~~v~~Ll~~g~  249 (260)
T 3jxi_A          228 PLMMAAKT------GKIGIFQHIIRREI  249 (260)
T ss_dssp             HHHHHHHT------TCHHHHHHHHHHHH
T ss_pred             HHHHHHHc------CCHHHHHHHHHhCC
Confidence            77665533      33445555554333

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=5e-30  Score=199.87  Aligned_cols=183  Identities=16%  Similarity=0.138  Sum_probs=163.3

Q ss_pred             hhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHH
Q 037085           10 SIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALH   89 (248)
Q Consensus        10 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh   89 (248)
                      +..|..|.|+||.|+..|+.++++.|++.+.++ +..+..|.||||+|+..|+.+++++|++.+.......+..|.||||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            345788999999999999999999999999887 7889999999999999999999999999976655555666999999


Q ss_pred             HHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHH
Q 037085           90 LAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC  169 (248)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a  169 (248)
                      +|+..++.+++++|++.|++      ++..+..|.||||+|+..++.+++++|+++|+      +++.++..|.||||+|
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~------~~~~~~~~g~t~l~~a  149 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGAD------PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ------DVDMMDQNGMTPLMWA  149 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCC------CccccCCCCCcHHHHH
Confidence            99999999999999999888      78899999999999999999999999999997      7899999999999999


Q ss_pred             HHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          170 NANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       170 ~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      +..+   ...+++++|++.|++++......+.++++++.
T Consensus       150 ~~~~---~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~  185 (240)
T 3eu9_A          150 AYRT---HSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV  185 (240)
T ss_dssp             HHHC---CSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             HHhC---ChHHHHHHHHhcCCCcchhhccCCCcHHHHHH
Confidence            9663   23688999999999999887755555776554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=8.3e-31  Score=205.14  Aligned_cols=166  Identities=16%  Similarity=0.156  Sum_probs=120.0

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAV   92 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~   92 (248)
                      +..|.||||.|+..++.++++.|++++.++.  .+..|.||||.|+..|+.+++++|++.+. +++.+|..|.||||+|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS-SCCCCCTTSCCHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHH
Confidence            4679999999999999999999999999883  34778999999999999999999999855 68889999999999999


Q ss_pred             HcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCC-CHHHHHHH
Q 037085           93 KKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQ-TALQLCNA  171 (248)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~-tpl~~a~~  171 (248)
                      ..|+.+++++|+++|++      ++.+|..|+||||+|+..|+.+++++|+++|+      +++.++..|. ||+|+|..
T Consensus        79 ~~g~~~~v~~Ll~~ga~------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~~~~t~l~~a~~  146 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVN------VNAADSDGWTPLHCAASCNNVQVCKFLVESGA------AVFAMTYSDMQTAADKCEE  146 (239)
T ss_dssp             HHTCHHHHHHHHHHTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCSSSCCCHHHHCCS
T ss_pred             HcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CcceecCCCCcchHHHHHH
Confidence            99999999999999988      89999999999999999999999999999998      8899998877 99999832


Q ss_pred             cCCCchHHHHHHHHHHhhhhcCCC
Q 037085          172 NSQDSVFKEIGWIIQRAVAQQSPQ  195 (248)
Q Consensus       172 ~~~~~~~~~i~~~L~~~g~~~~~~  195 (248)
                      .  ..++.+++++|+++|++++..
T Consensus       147 ~--~~g~~~~~~~Ll~~~a~~~~~  168 (239)
T 1ycs_B          147 M--EEGYTQCSQFLYGVQEKMGIM  168 (239)
T ss_dssp             S--STTCCCHHHHHHHHHHHTTTT
T ss_pred             h--hhccHHHHHHHHHhhhccccc
Confidence            1  337789999999999998765

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=1.7e-29  Score=207.19  Aligned_cols=173  Identities=20%  Similarity=0.217  Sum_probs=152.0

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchh---------hhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhh
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELC---------LEVDNSLMIPLHRAALEGDSDVIRALVSICPESLE   78 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---------~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~   78 (248)
                      .++..|..|.||||+|+..|+.+++++|++.++++.         ...+..|.||||+|+..|+.+++++||++.+.+++
T Consensus       117 ~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n  196 (337)
T 4g8k_A          117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN  196 (337)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT
T ss_pred             hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC
Confidence            356778999999999999999999999999988662         23355789999999999999999999987677789


Q ss_pred             hhccCCCcHHHHHHHcCC----hHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccccccccc
Q 037085           79 KLTSNGETALHLAVKKSR----SDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIR  154 (248)
Q Consensus        79 ~~~~~g~t~lh~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~  154 (248)
                      .+|..|.|++|.++..+.    ..++++|+++|++      ++.+|..|+||||+|+..|+.++++.|++.+.     ++
T Consensus       197 ~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad------~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~-----~~  265 (337)
T 4g8k_A          197 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD------VNVRGERGKTPLILAVEKKHLGLVQRLLEQEH-----IE  265 (337)
T ss_dssp             CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC------TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT-----CC
T ss_pred             ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC-----Cc
Confidence            999999999999876654    3578999999988      88999999999999999999999999998632     38


Q ss_pred             ccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCC
Q 037085          155 INTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQ  195 (248)
Q Consensus       155 ~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~  195 (248)
                      ++.+|..|+||||+|+..    ++.+++++|+++|++++..
T Consensus       266 vn~~d~~G~TpL~~A~~~----g~~~iv~~Ll~~GAd~n~~  302 (337)
T 4g8k_A          266 INDTDSDGKTALLLAVEL----KLKKIAELLCKRGASTDCG  302 (337)
T ss_dssp             TTCBCTTSCBHHHHHHHT----TCHHHHHHHHTTSCSSTTC
T ss_pred             ccCcCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCCCCC
Confidence            999999999999999988    7899999999999988654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=3.4e-30  Score=214.37  Aligned_cols=167  Identities=24%  Similarity=0.278  Sum_probs=149.4

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHhcC---cchhhhhcCCCCcHHHHHHHhC---CHHHHHHHHHhCchhhhh--
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGENN---RELCLEVDNSLMIPLHRAALEG---DSDVIRALVSICPESLEK--   79 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~g~t~L~~A~~~g---~~~~~~~Ll~~~~~~~~~--   79 (248)
                      .++..|..|.||||+|+..|+.+++++|++.+   .++ +..+..|.||||+|+..+   +.+++++|++.+.+ ++.  
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~  268 (373)
T 2fo1_E          191 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK-VDYDG  268 (373)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCS
T ss_pred             CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC-ccccc
Confidence            34567889999999999999999999999987   455 778999999999999998   89999999998644 433  


Q ss_pred             ------hccCCCcHHHHHHHcCChHHHHHHHHHH-hccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccccccc
Q 037085           80 ------LTSNGETALHLAVKKSRSDAFQALVDEA-KSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIM  152 (248)
Q Consensus        80 ------~~~~g~t~lh~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~  152 (248)
                            .|..|.||||+|+..|+.+++++|++++ ++      ++.+|..|.||||+|+..|+.+++++|+++|+     
T Consensus       269 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~------~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-----  337 (373)
T 2fo1_E          269 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN------KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA-----  337 (373)
T ss_dssp             GGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-----
T ss_pred             ccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----
Confidence                  5678999999999999999999999986 66      88999999999999999999999999999998     


Q ss_pred             ccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhc
Q 037085          153 IRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQ  192 (248)
Q Consensus       153 ~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~  192 (248)
                       +++.+|..|+|||++|+..    ++.+++++|++++++.
T Consensus       338 -d~~~~d~~g~t~l~~A~~~----g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          338 -SVEAVDATDHTARQLAQAN----NHHNIVDIFDRCRPER  372 (373)
T ss_dssp             -CSSCCCSSSCCHHHHHHHT----TCHHHHHHHHTTC---
T ss_pred             -CccCCCCCCCCHHHHHHHc----CCHHHHHHHHhcCccc
Confidence             8999999999999999988    7899999999998763

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=8e-30  Score=205.53  Aligned_cols=149  Identities=30%  Similarity=0.397  Sum_probs=135.6

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhh--------
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKL--------   80 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~--------   80 (248)
                      ++..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+.+ ++..        
T Consensus        66 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l  143 (299)
T 1s70_B           66 INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPL  143 (299)
T ss_dssp             TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHH
Confidence            5667889999999999999999999999999998 78899999999999999999999999997542 2222        


Q ss_pred             ----------------------------------------------------ccCCCcHHHHHHHcCChHHHHHHHHHHh
Q 037085           81 ----------------------------------------------------TSNGETALHLAVKKSRSDAFQALVDEAK  108 (248)
Q Consensus        81 ----------------------------------------------------~~~g~t~lh~a~~~~~~~~~~~Ll~~~~  108 (248)
                                                                          +..|.||||+|+..|+.+++++|+++|+
T Consensus       144 ~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  223 (299)
T 1s70_B          144 DIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY  223 (299)
T ss_dssp             HHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             HHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence                                                                2468899999999999999999999998


Q ss_pred             ccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHH
Q 037085          109 SHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNA  171 (248)
Q Consensus       109 ~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~  171 (248)
                      +      ++.+|..|.||||+|+..|+.+++++|+++|+      +++.+|..|+||+++|.+
T Consensus       224 d------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga------d~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          224 D------VNIKDYDGWTPLHAAAHWGKEEACRILVENLC------DMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             C------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCTTTSCCS
T ss_pred             C------CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHH
Confidence            8      88999999999999999999999999999998      899999999999999964

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.2e-29  Score=188.53  Aligned_cols=150  Identities=19%  Similarity=0.195  Sum_probs=133.8

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT   81 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   81 (248)
                      |+..+...+..|..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++. +.+++.+|
T Consensus        22 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~   99 (172)
T 3v30_A           22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLER-DVDINIYD   99 (172)
T ss_dssp             HTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCC
T ss_pred             HHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCC
Confidence            45667778889999999999999999999999999999988 78899999999999999999999999998 45588899


Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCC
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ  161 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  161 (248)
                      ..|.||||+|+..++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++++      ++...+..
T Consensus       100 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~------~~~~~~~~  167 (172)
T 3v30_A          100 WNGGTPLLYAVRGNHVKCVEALLARGAD------LTTEADSGYTPMDLAVALGYRKVQQVIENHIL------KLFQSNLV  167 (172)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH------HHSCC---
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH------HHhcccCC
Confidence            9999999999999999999999999988      88899999999999999999999999999998      77778888


Q ss_pred             CCCH
Q 037085          162 GQTA  165 (248)
Q Consensus       162 g~tp  165 (248)
                      |.||
T Consensus       168 ~~~p  171 (172)
T 3v30_A          168 PADP  171 (172)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            8876

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=202.83  Aligned_cols=179  Identities=16%  Similarity=0.133  Sum_probs=160.2

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcc-hhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRE-LCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA   91 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a   91 (248)
                      +..+++++|.|+..|+.+.++.+++...+ ..+..|..|.||||+|+..|+.+++++|++.+..+++..+..|.||||+|
T Consensus        73 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           73 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             HHHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence            44567889999999999999999988765 23778999999999999999999999999997767899999999999999


Q ss_pred             H-----HcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHH
Q 037085           92 V-----KKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL  166 (248)
Q Consensus        92 ~-----~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl  166 (248)
                      +     ..++.+++++|++.|..      .+..+..|.||||+|+..|+.+++++|+++|+      +++.+|..|+|||
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga------d~n~~d~~G~TpL  220 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNI------NAKASQAGQTALMLAVSHGRVDVVKALLACEA------DVNVQDDDGSTAL  220 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCT------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHH
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCC------ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCC------CCCCCCCCCCCHH
Confidence            9     66889999999999876      77888999999999999999999999999998      8999999999999


Q ss_pred             HHHHHcCCCchHHHHHHHHHH-hhhhcCCCCCCCCCccccccc
Q 037085          167 QLCNANSQDSVFKEIGWIIQR-AVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       167 ~~a~~~~~~~~~~~i~~~L~~-~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      |+|+..    ++.+++++|++ .|++++.....+.+ |++++.
T Consensus       221 h~A~~~----g~~~iv~~Ll~~~gad~~~~d~~g~T-pL~~A~  258 (276)
T 4hbd_A          221 MCACEH----GHKEIAGLLLAVPSCDISLTDRDGST-ALMVAL  258 (276)
T ss_dssp             HHHHHH----TCHHHHHHHHTSTTCCTTCCCTTSCC-HHHHHH
T ss_pred             HHHHHC----CCHHHHHHHHhcCCCCCcCcCCCCCC-HHHHHH
Confidence            999988    78999999999 89999988776655 776554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=1.5e-29  Score=185.21  Aligned_cols=146  Identities=14%  Similarity=0.063  Sum_probs=118.2

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCc-H
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGET-A   87 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t-~   87 (248)
                      ....+..|.||||+|+..|+.+++++|++++.++ +.++..|.||||+|+ .|+.+++++|++. +.+++.+|..|.| |
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRP   81 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHH
Confidence            4566888999999999999999999999999988 788999999999986 9999999999998 4568889999999 9


Q ss_pred             HHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHH
Q 037085           88 LHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQ  167 (248)
Q Consensus        88 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~  167 (248)
                      ||+|+..|+.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +++.++..|.||.+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGAR------LDVRDAWGRLPVDLAEELGHRDVARYLRAAAG------GTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC------SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC------CCCccCcCcCcccc
Confidence            9999999999999999999988      88999999999999999999999999999998      89999999999987


Q ss_pred             HH
Q 037085          168 LC  169 (248)
Q Consensus       168 ~a  169 (248)
                      -+
T Consensus       150 ~~  151 (156)
T 1bi7_B          150 GP  151 (156)
T ss_dssp             --
T ss_pred             cC
Confidence            44

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=8.7e-29  Score=177.01  Aligned_cols=130  Identities=15%  Similarity=0.205  Sum_probs=95.8

Q ss_pred             hhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCC-
Q 037085           44 LEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKE-  122 (248)
Q Consensus        44 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~-  122 (248)
                      +.++..|.||||+|+..|+.+++++|++.+ .+++.++..|.||||+|+. ++.+++++|+++|++      ++.+|.. 
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~------~~~~~~~~   77 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE------PNCADPAT   77 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC------SSCCBTTT
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC------CCCcCCCC
Confidence            556677777777777777777777777763 4466667777777777777 777777777777766      6677777 


Q ss_pred             CCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhh
Q 037085          123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQ  191 (248)
Q Consensus       123 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~  191 (248)
                      |.||||+|+..|+.+++++|+++|+      +++.+|..|.||||+|+..    ++.+++++|+++|++
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~d~~g~tpl~~A~~~----~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGA------RLDVCDAWGRLPVDLAEEQ----GHRDIARYLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCC------CCCCCSSSSSCHHHHHHHH----TCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC------CCCccCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC
Confidence            7777777777777777777777776      6777777777777777766    567777777777764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=4.6e-29  Score=187.77  Aligned_cols=161  Identities=11%  Similarity=0.021  Sum_probs=141.2

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCH----HHHHHHHHhCchhhhhhccCCCcHHHHH
Q 037085           16 GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDS----DVIRALVSICPESLEKLTSNGETALHLA   91 (248)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~----~~~~~Ll~~~~~~~~~~~~~g~t~lh~a   91 (248)
                      +.++|+.|+..|+.+.++.+++.+...  ..+..|.||||+|+..|+.    +++++|++. +.+++.+|..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHH
Confidence            568999999999999999999987643  2237799999999999975    599999998 556899999999999999


Q ss_pred             HHcCC------hHHHHHHHHHHhccccccccccccCCCC-cHhHHHHhCC-----cHHHHHHHHh-hccccccccccccc
Q 037085           92 VKKSR------SDAFQALVDEAKSHRKEHLFTWKDKEGN-TVLHLATLNK-----LKQIVELLIR-ENSNRRIMIRINTV  158 (248)
Q Consensus        92 ~~~~~------~~~~~~Ll~~~~~~~~~~~~~~~~~~g~-t~Lh~A~~~~-----~~~~v~~Ll~-~g~~~~~~~~~~~~  158 (248)
                      +..++      .+++++|+++|++      ++.+|..|. ||||+|+..+     +.+++++|++ +|+      |++.+
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga------d~~~~  150 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL------QLLIK  150 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC------CTTCC
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC------CCccc
Confidence            99987      5789999999999      999999999 9999999944     4679999999 898      89999


Q ss_pred             CCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCC
Q 037085          159 NKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQ  195 (248)
Q Consensus       159 ~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~  195 (248)
                      |..|+||||+|+..    ++.+++++|.+...+.+..
T Consensus       151 d~~G~TpL~~A~~~----~~~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          151 DKWGLTALEFVKRC----QKPIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             CTTSCCHHHHHHTT----TCHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHc----CCHHHHHHHHHHHHHHhcc
Confidence            99999999999987    7889999999887766554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=6.3e-31  Score=204.52  Aligned_cols=178  Identities=14%  Similarity=0.082  Sum_probs=149.2

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      .+..+..|.|+||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.|||
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpL   91 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSHGWTPL   91 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHH
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            3455677888999999999999999999999988 78899999999999999999999999998 456888999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhcccccccccccc-CCCCcHhHHH--HhCCcHHHHHHHHhhcccccccccccccCCCCCCH
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD-KEGNTVLHLA--TLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTA  165 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tp  165 (248)
                      |+|+..|+.+++++|+++|++      ++.++ ..|.||||+|  +..++.+++++|+++|+      +++..|..|.||
T Consensus        92 h~A~~~g~~~~v~~Ll~~ga~------~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga------~~~~~~~~~~~~  159 (229)
T 2vge_A           92 HCAASCNDTVICMALVQHGAA------IFATTLSDGATAFEKCDPYREGYADCATYLADVEQ------SMGLMNSGAVYA  159 (229)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCC------TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH------HTTTSGGGEEEE
T ss_pred             HHHHHcCCHHHHHHHHHcCCC------cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC------CcccccCCchHH
Confidence            999999999999999999988      77776 6999999999  99999999999999998      788888888888


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHhhhhc--CCCCCCCCCccccccc
Q 037085          166 LQLCNANSQDSVFKEIGWIIQRAVAQQ--SPQLPDAGSANVSWNQ  208 (248)
Q Consensus       166 l~~a~~~~~~~~~~~i~~~L~~~g~~~--~~~~~~~~~~~~~~~~  208 (248)
                      ++.+...       ...++|++.|+++  +.++..+. +|++++.
T Consensus       160 l~~~~~~-------~~~~~ll~~ga~~~~~~~d~~G~-TpL~~A~  196 (229)
T 2vge_A          160 LWDYSAE-------FGDELSFREGESVTVLRRDGPEE-TDWWWAA  196 (229)
T ss_dssp             SSCBCCS-------STTBCCBCTTCEEEEEESSCTTC-SSEEEEE
T ss_pred             HHHHhhc-------cccccCccccccccccccCCCcc-cHHHHHH
Confidence            8755332       2235677778874  33343333 3777655

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=8.8e-29  Score=176.99  Aligned_cols=130  Identities=14%  Similarity=0.119  Sum_probs=122.9

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccC-CCcH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSN-GETA   87 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~-g~t~   87 (248)
                      ++..+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+. |+.+++++|++.+ .+++.+|.. |.||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCCCCH
Confidence            5678899999999999999999999999999988 7889999999999999 9999999999985 458888999 9999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085           88 LHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus        88 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                      ||+|+..++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGAR------LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCC------CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999988      88999999999999999999999999999987

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=9e-28  Score=181.57  Aligned_cols=147  Identities=23%  Similarity=0.189  Sum_probs=134.3

Q ss_pred             hhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCC
Q 037085           44 LEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEG  123 (248)
Q Consensus        44 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g  123 (248)
                      +.+|..|.||||+|+..|+.+++++|++. +..++..+..|.||||+|+..++.+++++|+++|++      ++.+|..|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g  101 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN------VNTKDFSG  101 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTS
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCC
Confidence            56789999999999999999999999998 456788899999999999999999999999999988      88899999


Q ss_pred             CcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcc
Q 037085          124 NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSAN  203 (248)
Q Consensus       124 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~  203 (248)
                      .||||+|+..++.+++++|+++|+      +++.+|..|.||||+|+..    ++.+++++|+++|++++.....+.+ |
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~~~~~~g~t-~  170 (192)
T 2rfm_A          102 KTPLMWSIIFGYSEMSYFLLEHGA------NVNDRNLEGETPLIVASKY----GRSEIVKKLLELGADISARDLTGLT-A  170 (192)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTC------CSSCCCTTCCCHHHHHHHH----TCHHHHHHHHHTTCCTTCBCTTSCB-H
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCCCCcCCCCCC-H
Confidence            999999999999999999999997      8999999999999999988    7889999999999999887765555 6


Q ss_pred             ccccc
Q 037085          204 VSWNQ  208 (248)
Q Consensus       204 ~~~~~  208 (248)
                      ++++.
T Consensus       171 l~~A~  175 (192)
T 2rfm_A          171 EASAR  175 (192)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=6e-28  Score=180.56  Aligned_cols=147  Identities=16%  Similarity=0.196  Sum_probs=133.8

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT   81 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   81 (248)
                      |+..+..++..+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.+ .+++.+|
T Consensus        25 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d  102 (179)
T 3f6q_A           25 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVN  102 (179)
T ss_dssp             HHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccC
Confidence            34456667888999999999999999999999999999998 788999999999999999999999999984 5688899


Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCC
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ  161 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  161 (248)
                      ..|.||||+|+..++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +++..+..
T Consensus       103 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~------~~~~~~~~  170 (179)
T 3f6q_A          103 EHGNVPLHYACFWGQDQVAEDLVANGAL------VSICNKYGEMPVDKAKAPLRELLRERAEKMGQ------NLNRIPYK  170 (179)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCC------SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC------CCSCBCCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCC------cchhccCCCCcHHHHHHHHHHHHHHHHHHhhc------CcccCCcc
Confidence            9999999999999999999999999988      88999999999999999999999999999998      56555544


Q ss_pred             C
Q 037085          162 G  162 (248)
Q Consensus       162 g  162 (248)
                      +
T Consensus       171 ~  171 (179)
T 3f6q_A          171 D  171 (179)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=1.6e-27  Score=170.42  Aligned_cols=130  Identities=20%  Similarity=0.242  Sum_probs=117.8

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      .......|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.|||
T Consensus         7 ~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L   84 (136)
T 2jab_A            7 HHHHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPL   84 (136)
T ss_dssp             -----CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHH
T ss_pred             CCcccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHH
Confidence            3445667899999999999999999999999988 78899999999999999999999999998 456888899999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhc
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN  146 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g  146 (248)
                      |+|+..++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|
T Consensus        85 ~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           85 HLAAFIGHLEIAEVLLKHGAD------VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHcCCHHHHHHHHHcCCC------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999888      8889999999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=6.1e-27  Score=164.60  Aligned_cols=125  Identities=30%  Similarity=0.473  Sum_probs=118.5

Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHc
Q 037085           15 RGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKK   94 (248)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~   94 (248)
                      +|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.+ ..++.++..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHc
Confidence            5899999999999999999999999987 778999999999999999999999999984 55788899999999999999


Q ss_pred             CChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085           95 SRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus        95 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                      ++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ChHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999999999888      88899999999999999999999999999997

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=3.4e-27  Score=173.46  Aligned_cols=133  Identities=21%  Similarity=0.288  Sum_probs=122.8

Q ss_pred             hhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCc
Q 037085            7 QLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGET   86 (248)
Q Consensus         7 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t   86 (248)
                      ..++..|..|.||||+|+. |+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.+ .+++.+|..|.|
T Consensus        29 ~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t  105 (162)
T 1ihb_A           29 VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNL  105 (162)
T ss_dssp             CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCC
T ss_pred             CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCC
Confidence            3457788999999999999 9999999999999988 788999999999999999999999999984 568889999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085           87 ALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus        87 ~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                      |||+|+..++.+++++|+++|++.     ++.+|..|.||||+|+..++.+++++|+++|+
T Consensus       106 ~L~~A~~~~~~~~v~~Ll~~g~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          106 PLHLAAKEGHLRVVEFLVKHTASN-----VGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHHcCCHHHHHHHHHccCCC-----CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999999999999999998863     57899999999999999999999999999997

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=3.4e-27  Score=174.04  Aligned_cols=146  Identities=21%  Similarity=0.218  Sum_probs=133.0

Q ss_pred             hcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCc
Q 037085           46 VDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNT  125 (248)
Q Consensus        46 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t  125 (248)
                      .+.+|.||||.|+..|+.++++.|++..+...+..+..|.||||+|+..++.+++++|+++|++      ++.+|..|.|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t   77 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD------VHAKDKGGLV   77 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC------CCccCCCCCC
Confidence            4677889999999999999999999977777788888999999999999999999999999888      8899999999


Q ss_pred             HhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccc
Q 037085          126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVS  205 (248)
Q Consensus       126 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~  205 (248)
                      |||+|+..++.+++++|+++|+      +++.+|..|.||||+|+..    ++.+++++|+++|++++.+...+.+ |++
T Consensus        78 ~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~~~~~~g~t-~l~  146 (165)
T 3twr_A           78 PLHNACSYGHYEVAELLVKHGA------VVNVADLWKFTPLHEAAAK----GKYEICKLLLQHGADPTKKNRDGNT-PLD  146 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCCTTCCCTTSCC-TGG
T ss_pred             HHHHHHHcCcHHHHHHHHhCCC------CCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCcccCCCCCC-hhH
Confidence            9999999999999999999998      8999999999999999988    7899999999999999888776665 777


Q ss_pred             ccc
Q 037085          206 WNQ  208 (248)
Q Consensus       206 ~~~  208 (248)
                      .+.
T Consensus       147 ~a~  149 (165)
T 3twr_A          147 LVK  149 (165)
T ss_dssp             GSC
T ss_pred             hHh
Confidence            654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=5.3e-27  Score=173.38  Aligned_cols=142  Identities=14%  Similarity=0.141  Sum_probs=129.8

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhH
Q 037085           49 SLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLH  128 (248)
Q Consensus        49 ~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh  128 (248)
                      .|.||||.|+..|+.+++++|++.+ ..++.+|..|.||||+|+..|+.+++++|+++|++      ++..+..|.||||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~   74 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD------PQLLGKGRESALS   74 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------CCCcCCCCCcHHH
Confidence            5789999999999999999999985 55888999999999999999999999999999888      8889999999999


Q ss_pred             HHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          129 LATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       129 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      +|+..++.+++++|+++|+      +++.+|..|.||||+|+..    ++.+++++|+++|++++.....+.+ |++++.
T Consensus        75 ~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~  143 (167)
T 3v31_A           75 LACSKGYTDIVKMLLDCGV------DVNEYDWNGGTPLLYAVHG----NHVKCVKMLLESGADPTIETDSGYN-SMDLAV  143 (167)
T ss_dssp             HHHHHTCHHHHHHHHHHTC------CTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCC------CCCcCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHH
Confidence            9999999999999999997      8999999999999999988    7899999999999999887765555 666544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.1e-26  Score=163.28  Aligned_cols=126  Identities=31%  Similarity=0.433  Sum_probs=118.4

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhH
Q 037085           49 SLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLH  128 (248)
Q Consensus        49 ~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh  128 (248)
                      +|.||||+|+..|+.+++++|++.+ ..++..+..|.||||+|+..++.+++++|+++|.+      ++.+|..|.||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~l~   73 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLH   73 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC------CcccCCCCCcHHH
Confidence            5899999999999999999999984 45788899999999999999999999999999888      8889999999999


Q ss_pred             HHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhh
Q 037085          129 LATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQ  191 (248)
Q Consensus       129 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~  191 (248)
                      +|+..++.+++++|+++|+      +++.+|..|.|||++|+..    ++.+++++|+++|++
T Consensus        74 ~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~l~~A~~~----~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           74 LAARNGHLEVVKLLLEAGA------DVNAKDKNGRTPLHLAARN----GHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHTCC
T ss_pred             HHHHcChHHHHHHHHHcCC------CCcccCCCCCCHHHHHHHc----CcHHHHHHHHHcCCC
Confidence            9999999999999999997      8899999999999999987    789999999999985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=7.9e-27  Score=172.91  Aligned_cols=131  Identities=24%  Similarity=0.355  Sum_probs=122.2

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcH
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETA   87 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~   87 (248)
                      .++..|..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.+ ..++.+|..|.||
T Consensus        39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~  116 (169)
T 2y1l_E           39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTP  116 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCH
Confidence            35667889999999999999999999999999988 788999999999999999999999999984 5578889999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhc
Q 037085           88 LHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN  146 (248)
Q Consensus        88 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g  146 (248)
                      ||+|+..++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|++.|
T Consensus       117 L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          117 LHLAAMFGHLEIVEVLLKNGAD------VNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999999999999999988      8889999999999999999999999999875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=8.4e-27  Score=166.66  Aligned_cols=127  Identities=25%  Similarity=0.306  Sum_probs=116.7

Q ss_pred             hcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCc
Q 037085           46 VDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNT  125 (248)
Q Consensus        46 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t  125 (248)
                      ....+.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..++.+++++|+++|++      ++.+|..|.|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~t   82 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANG-ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD------VNAVDAIGFT   82 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCC
Confidence            3556789999999999999999999984 55788899999999999999999999999999888      8899999999


Q ss_pred             HhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhh
Q 037085          126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAV  189 (248)
Q Consensus       126 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g  189 (248)
                      |||+|+..++.+++++|+++|+      +++.+|..|.|||++|+..    ++.+++++|+++|
T Consensus        83 ~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~tpl~~A~~~----~~~~~~~~Ll~~G  136 (136)
T 2jab_A           83 PLHLAAFIGHLEIAEVLLKHGA------DVNAQDKFGKTAFDISIGN----GNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHC-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCC------CCcCcCCCCCCHHHHHHHC----CCHHHHHHHHHcC
Confidence            9999999999999999999997      8999999999999999988    7899999999876

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=1.6e-27  Score=174.40  Aligned_cols=140  Identities=14%  Similarity=0.117  Sum_probs=117.4

Q ss_pred             hhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCC
Q 037085           44 LEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEG  123 (248)
Q Consensus        44 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g  123 (248)
                      ...+..|.||||+|+..|+.+++++|++. +..++.++..|.||||+|+ .++.+++++|+++|++      ++.+|..|
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~------~~~~d~~g   77 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE------PNCADPAT   77 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC------CCCCCTTT
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC------CCCcCCCC
Confidence            44578899999999999999999999998 4568889999999999985 8999999999999888      89999999


Q ss_pred             Cc-HhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCC
Q 037085          124 NT-VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGS  201 (248)
Q Consensus       124 ~t-~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~  201 (248)
                      .| |||+|+..|+.+++++|+++|+      +++.+|..|.||||+|+..    ++.+++++|+++|+++......+.+
T Consensus        78 ~ttpL~~A~~~~~~~~v~~Ll~~ga------~~~~~d~~g~tpl~~A~~~----~~~~~v~~Ll~~ga~~~~~~~~g~t  146 (156)
T 1bi7_B           78 LTRPVHDAAREGFLDTLVVLHRAGA------RLDVRDAWGRLPVDLAEEL----GHRDVARYLRAAAGGTRGSNHARID  146 (156)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTC------CSSCCCTTCCCHHHHHHHH----TCHHHHHHHSSCC------------
T ss_pred             CcHHHHHHHHCCCHHHHHHHHHcCC------CCcccCCCCCCHHHHHHHh----CHHHHHHHHHHcCCCCCccCcCcCc
Confidence            99 9999999999999999999998      8999999999999999988    7889999999999999887765544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.8e-26  Score=168.58  Aligned_cols=130  Identities=22%  Similarity=0.260  Sum_probs=120.7

Q ss_pred             chhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCC
Q 037085            6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGE   85 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   85 (248)
                      +...+..|..|.||||+ +..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.+ .+++.+|..|.
T Consensus        26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~  102 (156)
T 1bd8_A           26 LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGA  102 (156)
T ss_dssp             CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSC
T ss_pred             CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCC
Confidence            34567788999999999 9999999999999999998 788999999999999999999999999985 56888899999


Q ss_pred             cHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhh
Q 037085           86 TALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRE  145 (248)
Q Consensus        86 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  145 (248)
                      ||||+|+..|+.+++++|++. ++      ++.+|..|.||||+|+..|+.+++++|+++
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~-~~------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          103 LPIHLAVQEGHTAVVSFLAAE-SD------LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTT-SC------TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHhChHHHHHHHHhc-cC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999988 66      888999999999999999999999999874

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=6.3e-27  Score=181.89  Aligned_cols=150  Identities=19%  Similarity=0.185  Sum_probs=126.2

Q ss_pred             HHHHHhcCcchh--hhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhc
Q 037085           32 VRIFGENNRELC--LEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKS  109 (248)
Q Consensus        32 v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~  109 (248)
                      ++.|++++.++.  ...+..+.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++.|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM-NDPSQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            466788877652  334556778899999999999999999985 45888999999999999999999999999999988


Q ss_pred             cccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccC-CCCCCHHHHH--HHcCCCchHHHHHHHHH
Q 037085          110 HRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KQGQTALQLC--NANSQDSVFKEIGWIIQ  186 (248)
Q Consensus       110 ~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~-~~g~tpl~~a--~~~~~~~~~~~i~~~L~  186 (248)
                            ++.+|..|.||||+|+..|+.+++++|+++|+      +++.++ ..|.||||+|  +..    ++.+++++|+
T Consensus        80 ------~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga------~~~~~~~~~g~tpL~~A~a~~~----~~~~~v~~Ll  143 (229)
T 2vge_A           80 ------VNSPDSHGWTPLHCAASCNDTVICMALVQHGA------AIFATTLSDGATAFEKCDPYRE----GYADCATYLA  143 (229)
T ss_dssp             ------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC------CTTCCCSSTTCCTGGGCCTTST----THHHHHHHHH
T ss_pred             ------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CcccccCCCCCCHHHHHHHHhc----ChHHHHHHHH
Confidence                  89999999999999999999999999999998      788886 5999999999  655    8999999999


Q ss_pred             HhhhhcCCCCCC
Q 037085          187 RAVAQQSPQLPD  198 (248)
Q Consensus       187 ~~g~~~~~~~~~  198 (248)
                      ++|++++.....
T Consensus       144 ~~ga~~~~~~~~  155 (229)
T 2vge_A          144 DVEQSMGLMNSG  155 (229)
T ss_dssp             HHHHHTTTSGGG
T ss_pred             HcCCCcccccCC
Confidence            999999887543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=6.4e-27  Score=167.39  Aligned_cols=129  Identities=19%  Similarity=0.194  Sum_probs=94.6

Q ss_pred             hhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCC
Q 037085           45 EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGN  124 (248)
Q Consensus        45 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~  124 (248)
                      .+|..|.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..++.+++++|+++|++      ++.+|..|.
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~   77 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL------VNTTGYQND   77 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCGGGC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc------ccCcCCCCC
Confidence            35677778888888888888888877763 44667777788888888888888888888877766      677777888


Q ss_pred             cHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhh
Q 037085          125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVA  190 (248)
Q Consensus       125 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~  190 (248)
                      ||||+|+..++.+++++|+++|+      +++.+|..|.||+++|+..    +..+++++|.+.+.
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A~~~----~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGA------SRNAVNIFGLRPVDYTDDE----SMKSLLLLPEKNES  133 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCGGGGCCCH----HHHHHHSCC-----
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCC------CCCCCCCCCCCHHHHHhhc----cHHHHHhhcccccc
Confidence            88888888888888888888776      6777888888888887644    66777766665543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=5.9e-26  Score=165.41  Aligned_cols=123  Identities=19%  Similarity=0.229  Sum_probs=116.5

Q ss_pred             hccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHH
Q 037085           12 KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA   91 (248)
Q Consensus        12 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a   91 (248)
                      .+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A  107 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWA  107 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHHc-CCCCCCCCCCCCCHHHHH
Confidence            4778999999999999999999999999988 78899999999999999999999999998 456888999999999999


Q ss_pred             HHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHH
Q 037085           92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL  142 (248)
Q Consensus        92 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L  142 (248)
                      +..++.+++++|+++|++      ++.+|..|.||||+|+..|+.+++++|
T Consensus       108 ~~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          108 TEHNHQEVVELLIKYGAD------VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCC------ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999988      888999999999999999999999987

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=9.3e-27  Score=179.98  Aligned_cols=133  Identities=18%  Similarity=0.198  Sum_probs=119.0

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcH
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETA   87 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~   87 (248)
                      .+...+..|.||||+|+..|+.++++.|++.+.++ +.+|..|.||||+|+..|+.+++++|++..+..++.+|..|.||
T Consensus        65 ~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tp  143 (222)
T 3ehr_A           65 YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTA  143 (222)
T ss_dssp             HHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCH
T ss_pred             hccccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCH
Confidence            45667888999999999999999999999999987 78899999999999999999999999998566788999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085           88 LHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus        88 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                      ||+|+..|+.+++++|+++|++      ++.+|..|.||||+|+..++.++++.|++.++
T Consensus       144 L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          144 LHAAAWKGYADIVQLLLAKGAR------TDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC------SCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC------CccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            9999999999999999999998      88999999999999999999999999999998

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=7.8e-27  Score=190.76  Aligned_cols=147  Identities=13%  Similarity=0.110  Sum_probs=119.9

Q ss_pred             chhHhhhccCCCCHHHHHHhCCC---HHHHHHHHhcCcchhhhhcCCCCcHHHHHHH----hCCHHHHHHHHHhC-----
Q 037085            6 PQLASIKNQRGETTMHLLSTDGD---ARMVRIFGENNRELCLEVDNSLMIPLHRAAL----EGDSDVIRALVSIC-----   73 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~~~~Ll~~~-----   73 (248)
                      +..++.+|..|+||||+|+..|+   .++++.|++.+....+.+|..|.||||+|+.    .|+.+++++|++.+     
T Consensus       154 Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~  233 (327)
T 1sw6_A          154 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV  233 (327)
T ss_dssp             TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHh
Confidence            34456789999999999999998   6788888888744348899999999999999    89999999999873     


Q ss_pred             --------------chhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHH
Q 037085           74 --------------PESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIV  139 (248)
Q Consensus        74 --------------~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v  139 (248)
                                    +..++.++..|.||||+|+.      +++|+++  +      ++.+|..|+||||+|+..|+.+++
T Consensus       234 ~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~------~n~~d~~G~TpLh~A~~~g~~~~v  299 (327)
T 1sw6_A          234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--M------LNAQDSNGDTCLNIAARLGNISIV  299 (327)
T ss_dssp             HGGGCCEEEC----------------CHHHHHCS------HHHHHHH--T------TTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             cccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--C------CCCCCCCCCCHHHHHHHcCCHHHH
Confidence                          45577889999999999985      8889887  3      788999999999999999999999


Q ss_pred             HHHHhhcccccccccccccCCCCCCHHHHHHHc
Q 037085          140 ELLIRENSNRRIMIRINTVNKQGQTALQLCNAN  172 (248)
Q Consensus       140 ~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~  172 (248)
                      ++|+++|+      |++.+|..|+||||+|+..
T Consensus       300 ~~Ll~~Ga------d~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          300 DALLDYGA------DPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHHHHTTC------CTTCCCTTSCCGGGGTCC-
T ss_pred             HHHHHcCC------CCcccCCCCCCHHHHHHhc
Confidence            99999998      8999999999999999754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.4e-26  Score=165.61  Aligned_cols=129  Identities=23%  Similarity=0.272  Sum_probs=116.7

Q ss_pred             hhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 037085           11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHL   90 (248)
Q Consensus        11 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~   90 (248)
                      .+|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHH
Confidence            56889999999999999999999999999988 78899999999999999999999999998 45688899999999999


Q ss_pred             HHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085           91 AVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                      |+..++.+++++|+++|++      ++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus        83 A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGAS------RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCC------TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHcCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            9999999999999999988      88999999999999999988888888776553

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=1.1e-25  Score=168.99  Aligned_cols=142  Identities=21%  Similarity=0.197  Sum_probs=124.9

Q ss_pred             hhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc-cCCCcHHH
Q 037085           11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT-SNGETALH   89 (248)
Q Consensus        11 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~lh   89 (248)
                      ..+..|.||||+|+..|+.++++.|++ +.++ +.+|..|.||||+|+..|+.+++++|++.+ .+++.++ ..|.||||
T Consensus        39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~  115 (183)
T 3deo_A           39 DVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSSCCHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCCHHH
Confidence            346789999999999999999999999 7777 788999999999999999999999999985 4566677 88999999


Q ss_pred             HHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHH
Q 037085           90 LAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC  169 (248)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a  169 (248)
                      +|+..++.+++++|+++|++      ++.+|..|.||||+|+..+                       ....+.+++++|
T Consensus       116 ~A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~tpl~~A~~~~-----------------------~~~~~~~~l~~a  166 (183)
T 3deo_A          116 MAAGYVRPEVVEALVELGAD------IEVEDERGLTALELAREIL-----------------------KTTPKGNPMQFG  166 (183)
T ss_dssp             HHHHTTCHHHHHHHHHHTCC------TTCCCTTSCCHHHHHHHHH-----------------------HTCCCCSHHHHH
T ss_pred             HHHhcCcHHHHHHHHHcCCC------CcCCCCCCCCHHHHHHHhc-----------------------cCcccccHHHHH
Confidence            99999999999999999988      8899999999999998631                       123567999999


Q ss_pred             HHcCCCchHHHHHHHHHHh
Q 037085          170 NANSQDSVFKEIGWIIQRA  188 (248)
Q Consensus       170 ~~~~~~~~~~~i~~~L~~~  188 (248)
                      +..    +..+++++|.++
T Consensus       167 ~~~----~~~~i~~~L~~~  181 (183)
T 3deo_A          167 RRI----GLEKVINVLEGQ  181 (183)
T ss_dssp             HHH----HHHHHHHHHHTC
T ss_pred             HHc----CHHHHHHHHHHh
Confidence            987    899999998754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=1.3e-25  Score=176.08  Aligned_cols=146  Identities=21%  Similarity=0.192  Sum_probs=128.6

Q ss_pred             hhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc-cCCCcHHH
Q 037085           11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT-SNGETALH   89 (248)
Q Consensus        11 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~lh   89 (248)
                      ..+..|.||||+|+..|+.++++.|++ +.++ +.+|..|.||||+|+..|+.+++++|++.+ .+++..+ ..|.||||
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~t~L~  116 (244)
T 3ui2_A           40 DVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSCCCHHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCCCCCCCHHH
Confidence            345679999999999999999999999 7777 788999999999999999999999999985 4566666 88999999


Q ss_pred             HHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHH
Q 037085           90 LAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC  169 (248)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a  169 (248)
                      +|+..|+.+++++|+++|++      ++.+|..|.||||+|+..            +           ....+.|||++|
T Consensus       117 ~A~~~g~~~~v~~Ll~~ga~------~~~~d~~g~t~l~~A~~~------------~-----------~~~~~~~~l~~a  167 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVELGAD------IEVEDERGLTALELAREI------------L-----------KTTPKGNPMQFG  167 (244)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHH------------H-----------TTCCCSSHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCC------CCCCCCCCCcHHHHHHHH------------H-----------hccCCCCHHHHH
Confidence            99999999999999999988      889999999999999851            1           234689999999


Q ss_pred             HHcCCCchHHHHHHHHHHhhhhc
Q 037085          170 NANSQDSVFKEIGWIIQRAVAQQ  192 (248)
Q Consensus       170 ~~~~~~~~~~~i~~~L~~~g~~~  192 (248)
                      +..    ++.+++++|++++.+.
T Consensus       168 ~~~----g~~~iv~~L~~~~~~~  186 (244)
T 3ui2_A          168 RRI----GLEKVINVLEGQVFEY  186 (244)
T ss_dssp             HHH----HHHHHHHHHHHHHEEE
T ss_pred             HHc----ChHHHHHHHHHhcccc
Confidence            987    8999999999987653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=3e-27  Score=195.98  Aligned_cols=161  Identities=14%  Similarity=0.047  Sum_probs=133.2

Q ss_pred             hhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchh--hhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchh--hhhhccCCC
Q 037085           10 SIKNQRGETTMHLLSTDGDARMVRIFGENNRELC--LEVDNSLMIPLHRAALEGDSDVIRALVSICPES--LEKLTSNGE   85 (248)
Q Consensus        10 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~--~~~~~~~g~   85 (248)
                      ...+.++.||||+|+..|+.+++++|++.+....  ...+..|.||||+|+..|+.+++++|++.+++.  .+..+.+ .
T Consensus        86 ~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~  164 (376)
T 2aja_A           86 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-Y  164 (376)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-H
T ss_pred             HHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-C
Confidence            3456677899999999999999999999987221  133556789999999999999999999997531  1222233 9


Q ss_pred             cHHHHHHHcCChHHHHHHHHHHhcccccccccc--ccCCCCcHhHHHH-hCCcHHHHHHHHhhcccccccccccccCCCC
Q 037085           86 TALHLAVKKSRSDAFQALVDEAKSHRKEHLFTW--KDKEGNTVLHLAT-LNKLKQIVELLIRENSNRRIMIRINTVNKQG  162 (248)
Q Consensus        86 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~--~~~~g~t~Lh~A~-~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g  162 (248)
                      ||||+|+..|+.+++++|+++|++      ++.  .|..|.||||+|+ ..|+.++|++|++.|+      +       |
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~~ga~------~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------~-------~  225 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCELAPT------EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------M-------L  225 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGG------GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------H-------H
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCc------cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------c-------c
Confidence            999999999999999999999988      665  8889999999999 9999999999999775      2       7


Q ss_pred             CCHHHHHHHcCCCchHHHHHHHHHHhhhhcCC
Q 037085          163 QTALQLCNANSQDSVFKEIGWIIQRAVAQQSP  194 (248)
Q Consensus       163 ~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~  194 (248)
                      .|||++|+..    ++.+++++|+++|++++.
T Consensus       226 ~taL~~Aa~~----g~~evv~lL~~~ga~~~~  253 (376)
T 2aja_A          226 AYAEIHEFEY----GEKYVNPFIARHVNRLKE  253 (376)
T ss_dssp             HHHHHCTTTT----TTTTHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHC----CCHHHHHHHHhcCccccc
Confidence            8999999877    778899999999998754

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=2.3e-26  Score=179.89  Aligned_cols=152  Identities=16%  Similarity=0.102  Sum_probs=129.5

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAV   92 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~   92 (248)
                      +..|.||||+|+..|+.++++.|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~  111 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAA  111 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHH
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHH
Confidence            467899999999999999999999999987 78899999999999999999999999998 4568899999999999999


Q ss_pred             HcCChHHHHHHHHHHhccccccccccccCCCC-cHhHHH--HhCCcHHHHHHHHhhcccccc---cccccccCCCCCCHH
Q 037085           93 KKSRSDAFQALVDEAKSHRKEHLFTWKDKEGN-TVLHLA--TLNKLKQIVELLIRENSNRRI---MIRINTVNKQGQTAL  166 (248)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~-t~Lh~A--~~~~~~~~v~~Ll~~g~~~~~---~~~~~~~~~~g~tpl  166 (248)
                      ..|+.+++++|+++|++      ++.++..|. ||||+|  +..|+.+++++|++.|++...   +......+..+.+++
T Consensus       112 ~~~~~~~v~~Ll~~ga~------~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~  185 (239)
T 1ycs_B          112 SCNNVQVCKFLVESGAA------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD  185 (239)
T ss_dssp             HTTCHHHHHHHHHTTCC------TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTT
T ss_pred             HcCCHHHHHHHHHcCCC------cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCC
Confidence            99999999999999988      888888777 999999  788999999999999983210   001122366788888


Q ss_pred             HHHHHc
Q 037085          167 QLCNAN  172 (248)
Q Consensus       167 ~~a~~~  172 (248)
                      +++...
T Consensus       186 eLa~~~  191 (239)
T 1ycs_B          186 ELPMKE  191 (239)
T ss_dssp             BCCBCS
T ss_pred             cccccC
Confidence            877654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=9.7e-26  Score=169.59  Aligned_cols=126  Identities=6%  Similarity=0.031  Sum_probs=114.8

Q ss_pred             cCCCCHHHHHHhCCCH----HHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCC------HHHHHHHHHhCchhhhhhccC
Q 037085           14 QRGETTMHLLSTDGDA----RMVRIFGENNRELCLEVDNSLMIPLHRAALEGD------SDVIRALVSICPESLEKLTSN   83 (248)
Q Consensus        14 ~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~------~~~~~~Ll~~~~~~~~~~~~~   83 (248)
                      ..|+||||+|+..|+.    +++++|+++|+++ +.+|..|.||||+|+..|+      .+++++|++. +.+++.+|..
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~  113 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKP  113 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT-TCCSSSCBGG
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC-CCCCCccCCC
Confidence            6799999999999975    5999999999998 8899999999999999987      6889999998 5568999999


Q ss_pred             CC-cHHHHHHHcCC-----hHHHHHHHH-HHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085           84 GE-TALHLAVKKSR-----SDAFQALVD-EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus        84 g~-t~lh~a~~~~~-----~~~~~~Ll~-~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                      |. ||||+|+..+.     .+++++|++ +|++      ++.+|..|.||||+|+..++.+++++|.++..
T Consensus       114 g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad------~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ------LLIKDKWGLTALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             GTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC------TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence            99 99999998543     568999999 8988      99999999999999999999999999998765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=3e-25  Score=155.73  Aligned_cols=111  Identities=20%  Similarity=0.213  Sum_probs=85.4

Q ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcH
Q 037085           47 DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTV  126 (248)
Q Consensus        47 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~  126 (248)
                      +..|.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..++.+++++|+++|++      ++.+|..|+||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~tp   76 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD------INAPDKHHITP   76 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC------TTCCCTTSCCH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCCH
Confidence            455677888888888888888888764 34677777788888888888888888888877776      77778888888


Q ss_pred             hHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHH
Q 037085          127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCN  170 (248)
Q Consensus       127 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~  170 (248)
                      ||+|+..++.+++++|+++|+      +++.+|..|.||+++|.
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGA------DKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHhC
Confidence            888888888888888888876      67778888888888873

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=3.6e-25  Score=178.68  Aligned_cols=139  Identities=17%  Similarity=0.143  Sum_probs=122.0

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcchhhh-----hcCCCCcHHHHHHHh---CCHHHHHHHHHhCchhhhhhccCCCcH
Q 037085           16 GETTMHLLSTDGDARMVRIFGENNRELCLE-----VDNSLMIPLHRAALE---GDSDVIRALVSICPESLEKLTSNGETA   87 (248)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~   87 (248)
                      ..++|+.|+..|+.+.++.|++.+.++...     .+..|.||||+|+..   |+.+++++|++.+ .+++.+|..|.||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-advn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS-SCTTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC-CCCCCCCCCCCCH
Confidence            346799999999999999999999987332     688999999999997   8999999999994 5688899999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHH
Q 037085           88 LHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQ  167 (248)
Q Consensus        88 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~  167 (248)
                      ||+|+..|+.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|+++|+      +      .|.||||
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad------~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga------~------~g~tpLh  291 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRAL------VGTVNEAGETALDIARKKHHKECEELLEQAQA------G------TFAFPLH  291 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC------CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH------H------TTSSCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC------C------CCCChhH
Confidence            9999999999999999999998      88999999999999999999999999999987      3      5899999


Q ss_pred             HHHHcC
Q 037085          168 LCNANS  173 (248)
Q Consensus       168 ~a~~~~  173 (248)
                      +|+..+
T Consensus       292 ~A~~~g  297 (301)
T 2b0o_E          292 VDYSWV  297 (301)
T ss_dssp             ------
T ss_pred             HHHhcC
Confidence            998774

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=1.6e-25  Score=173.02  Aligned_cols=170  Identities=22%  Similarity=0.250  Sum_probs=129.2

Q ss_pred             hhccCCCCHHHHHHhCCCHHHHHHHHhcCc--------------chhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchh
Q 037085           11 IKNQRGETTMHLLSTDGDARMVRIFGENNR--------------ELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPES   76 (248)
Q Consensus        11 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~--------------~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~   76 (248)
                      ..+..++++.++++..|+...+..+.+.+.              ......+..|.||||+|+..|+.+++++|++.+ .+
T Consensus        20 l~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~   98 (222)
T 3ehr_A           20 LYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR-VG   98 (222)
T ss_dssp             SSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTT-CC
T ss_pred             eCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCC-CC
Confidence            345566666666666665433322222110              112445778899999999999999999999984 55


Q ss_pred             hhhhccCCCcHHHHHHHcCChHHHHHHHHH-HhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccc
Q 037085           77 LEKLTSNGETALHLAVKKSRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRI  155 (248)
Q Consensus        77 ~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~  155 (248)
                      ++.+|..|.||||+|+..|+.+++++|++. |++      ++.+|..|.||||+|+..|+.+++++|+++|+      ++
T Consensus        99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga------~~  166 (222)
T 3ehr_A           99 VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGA------RT  166 (222)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC------CS
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CC
Confidence            888899999999999999999999999998 777      89999999999999999999999999999998      89


Q ss_pred             cccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCC
Q 037085          156 NTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLP  197 (248)
Q Consensus       156 ~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~  197 (248)
                      +.+|..|+|||++|+..    +..++++.|+..|+.......
T Consensus       167 ~~~~~~g~t~l~~A~~~----~~~~~l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          167 DLRNIEKKLAFDMATNA----ACASLLKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             CCCCTTSCCHHHHCCSH----HHHHHHC--------------
T ss_pred             ccccCCCCCHHHHhcch----hHHHHHHHHhccchhhhccch
Confidence            99999999999999865    899999999999998765443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=3e-25  Score=155.75  Aligned_cols=114  Identities=17%  Similarity=0.153  Sum_probs=103.7

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAV   92 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~   92 (248)
                      +..|.|+||+|+..|+.++++.|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHH
Confidence            567899999999999999999999999987 78899999999999999999999999998 4568889999999999999


Q ss_pred             HcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCC
Q 037085           93 KKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNK  134 (248)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~  134 (248)
                      ..++.+++++|+++|++      ++.+|..|.||||+|...+
T Consensus        82 ~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGAD------KTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHCCCHH
T ss_pred             HcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHhCCHH
Confidence            99999999999999988      8899999999999995433

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=1.6e-23  Score=167.30  Aligned_cols=168  Identities=20%  Similarity=0.203  Sum_probs=139.9

Q ss_pred             hccCCCCHHHHHHhCCCHHHHHHHHhcCcc-------hh-------------hhh----------cCCCCcHHHHHHHhC
Q 037085           12 KNQRGETTMHLLSTDGDARMVRIFGENNRE-------LC-------------LEV----------DNSLMIPLHRAALEG   61 (248)
Q Consensus        12 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-------~~-------------~~~----------~~~g~t~L~~A~~~g   61 (248)
                      .|..+.+.++.+...|+..+.+++...-+.       ..             +..          .....++|+.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            577889999999999998877766432211       00             000          001235799999999


Q ss_pred             CHHHHHHHHHhCchh-----hhhhccCCCcHHHHHHHc---CChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhC
Q 037085           62 DSDVIRALVSICPES-----LEKLTSNGETALHLAVKK---SRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLN  133 (248)
Q Consensus        62 ~~~~~~~Ll~~~~~~-----~~~~~~~g~t~lh~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~  133 (248)
                      +.+.++.++..+.+.     ++..+..|.||||+|+..   ++.+++++|+++|++      ++.+|..|+||||+|+..
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~------in~~d~~g~TpLh~A~~~  215 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN------LDKQTGKGSTALHYCCLT  215 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC------TTCCCTTCCCHHHHHHHT
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC------ccccCCCCCCHHHHHHHc
Confidence            999999999986553     334478899999999999   899999999999998      899999999999999999


Q ss_pred             CcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCC
Q 037085          134 KLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQ  195 (248)
Q Consensus       134 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~  195 (248)
                      |+.+++++|+++|+      |++.+|..|.||||+|+..    ++.+++++|+++|++....
T Consensus       216 g~~~~v~~Ll~~ga------d~~~~d~~g~tpL~~A~~~----~~~~~v~~Ll~~ga~~~~~  267 (278)
T 1dcq_A          216 DNAECLKLLLRGKA------SIEIANESGETPLDIAKRL----KHEHCEELLTQALSGRFNS  267 (278)
T ss_dssp             TCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHTTCCCS
T ss_pred             CCHHHHHHHHHcCC------CCCCccCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCCCc
Confidence            99999999999998      8999999999999999988    7899999999999975443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=2.8e-24  Score=177.56  Aligned_cols=150  Identities=15%  Similarity=0.085  Sum_probs=115.9

Q ss_pred             hccCCCCHHHHHHhC-CCHHHHHHHHhcCcchhhhhc--CCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085           12 KNQRGETTMHLLSTD-GDARMVRIFGENNRELCLEVD--NSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus        12 ~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      .+..+.|+||.|+.. |+.++++.|++.+.++ +..+  ..|.||||+|+..|+.+++++|++. +.+++..|..|.|||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpL  272 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPL  272 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHH
Confidence            344566799999999 9999999999999988 6666  8899999999999999999999998 456888999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHH
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL  168 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~  168 (248)
                      |+|+..++.+++++|+++|++      ++.+|..|.||||+|+..++.+++++|++.+...   .+....+..+.|++++
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~---~~~~~~~~~~~t~l~i  343 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGAD------LGARDSEGRDPLTIAMETANADIVTLLRLAKMRE---AEAAQGQAGDETYLDI  343 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHHHcCcHHHHHHHHHCcCC------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc---ccccccCCCCCCHHHH
Confidence            999999999999999999988      8899999999999999999999999999887532   1344556678888887


Q ss_pred             HHHc
Q 037085          169 CNAN  172 (248)
Q Consensus       169 a~~~  172 (248)
                      +...
T Consensus       344 ~~~~  347 (368)
T 3jue_A          344 FRDF  347 (368)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            7543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=6.2e-25  Score=164.81  Aligned_cols=113  Identities=24%  Similarity=0.356  Sum_probs=105.4

Q ss_pred             hcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhcccccccccccc-CCCC
Q 037085           46 VDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD-KEGN  124 (248)
Q Consensus        46 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~  124 (248)
                      .+..|.||||+|+..|+.++++.|++  +.+++.+|..|.||||+|+..|+.+++++|+++|++      ++.++ ..|+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~~g~  111 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD------LDHRDMRGGL  111 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCSSSSC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCC
Confidence            35678999999999999999999999  446888999999999999999999999999999988      78888 8999


Q ss_pred             cHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHc
Q 037085          125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN  172 (248)
Q Consensus       125 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~  172 (248)
                      ||||+|+..|+.+++++|+++|+      +++.+|..|+||||+|+..
T Consensus       112 tpL~~A~~~~~~~~v~~Ll~~ga------~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          112 TALHMAAGYVRPEVVEALVELGA------DIEVEDERGLTALELAREI  153 (183)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTC------CTTCCCTTSCCHHHHHHHH
T ss_pred             CHHHHHHhcCcHHHHHHHHHcCC------CCcCCCCCCCCHHHHHHHh
Confidence            99999999999999999999998      8999999999999999875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=1.2e-25  Score=176.37  Aligned_cols=141  Identities=21%  Similarity=0.276  Sum_probs=121.5

Q ss_pred             cCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHH
Q 037085           14 QRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVK   93 (248)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~   93 (248)
                      ..+.+++++++..|+.+.+..+...+.+.    +..|.||||+|+..|+.++++.|++  +.+++.+|..|.||||+|+.
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~   86 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAG   86 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCHHH----HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHH
T ss_pred             CCCccHHHHHHHcCCCccccccccccccc----ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHH
Confidence            44666677777777766655544444333    4678999999999999999999999  44688899999999999999


Q ss_pred             cCChHHHHHHHHHHhcccccccccccc-CCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHc
Q 037085           94 KSRSDAFQALVDEAKSHRKEHLFTWKD-KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN  172 (248)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~  172 (248)
                      .|+.+++++|+++|++      ++.++ ..|.||||+|+..|+.+++++|+++|+      +++.+|..|.||||+|+..
T Consensus        87 ~g~~~~v~~Ll~~ga~------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga------~~~~~d~~g~t~l~~A~~~  154 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGAD------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGA------DIEVEDERGLTALELAREI  154 (244)
T ss_dssp             HTCHHHHHHHHHTTCC------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCC------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCcHHHHHHHH
Confidence            9999999999999988      88888 889999999999999999999999998      8999999999999999864

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=1.2e-22  Score=164.00  Aligned_cols=134  Identities=23%  Similarity=0.262  Sum_probs=118.3

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCchhhhh------hccCCCcHHHHHHHc---CChHHHHHHHHHHhccccccccccccC
Q 037085           51 MIPLHRAALEGDSDVIRALVSICPESLEK------LTSNGETALHLAVKK---SRSDAFQALVDEAKSHRKEHLFTWKDK  121 (248)
Q Consensus        51 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~------~~~~g~t~lh~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~  121 (248)
                      .++|+.|+..|+.+.++.|+..+.+ ++.      .+..|.||||+|+..   ++.+++++|+++|++      ++.+|.
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad------vn~~d~  224 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH------LDAKAA  224 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC------TTCCCT
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC------CCCCCC
Confidence            3569999999999999999988554 555      688999999999997   899999999999988      899999


Q ss_pred             CCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCC
Q 037085          122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGS  201 (248)
Q Consensus       122 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~  201 (248)
                      .|+||||+|+..|+.+++++|+++|+      +++.+|..|.|||++|+..    ++.+++++|+++|++.       ..
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~ga------d~~~~d~~G~TpL~~A~~~----~~~~iv~~Ll~~ga~~-------g~  287 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRA------LVGTVNEAGETALDIARKK----HHKECEELLEQAQAGT-------FA  287 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC------CCSCCCTTSCCHHHHHHHH----TCHHHHHHHHHHHHHT-------TS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHhcCCC-------CC
Confidence            99999999999999999999999998      8999999999999999988    7889999999999983       23


Q ss_pred             ccccccc
Q 037085          202 ANVSWNQ  208 (248)
Q Consensus       202 ~~~~~~~  208 (248)
                      +|++++.
T Consensus       288 tpLh~A~  294 (301)
T 2b0o_E          288 FPLHVDY  294 (301)
T ss_dssp             SCCC---
T ss_pred             ChhHHHH
Confidence            4666654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=2.2e-22  Score=160.64  Aligned_cols=125  Identities=21%  Similarity=0.187  Sum_probs=115.5

Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcchh-----hhhcCCCCcHHHHHHHh---CCHHHHHHHHHhCchhhhhhccCCCcHH
Q 037085           17 ETTMHLLSTDGDARMVRIFGENNRELC-----LEVDNSLMIPLHRAALE---GDSDVIRALVSICPESLEKLTSNGETAL   88 (248)
Q Consensus        17 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   88 (248)
                      .++|+.|+..|+.+.++.+++.+.++.     ...+..|.||||+|+..   |+.+++++|++.+ .+++.+|..|.|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCHH
Confidence            368999999999999999999998853     33488899999999999   8999999999995 56889999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccc
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN  148 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  148 (248)
                      |+|+..|+.+++++|+++|++      ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKAS------IEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCC------CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999998      899999999999999999999999999999984

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=1.7e-22  Score=134.61  Aligned_cols=91  Identities=32%  Similarity=0.474  Sum_probs=56.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHH
Q 037085           50 LMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHL  129 (248)
Q Consensus        50 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~  129 (248)
                      |.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..++.+++++|+++|++      ++.+|..|.||||+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHL   74 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHH
Confidence            55666666666666666666665 334556666666666666666666666666666555      55566666666666


Q ss_pred             HHhCCcHHHHHHHHhhcc
Q 037085          130 ATLNKLKQIVELLIRENS  147 (248)
Q Consensus       130 A~~~~~~~~v~~Ll~~g~  147 (248)
                      |+..|+.+++++|+++|+
T Consensus        75 A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCC
Confidence            666666666666666554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=2.5e-22  Score=133.73  Aligned_cols=92  Identities=26%  Similarity=0.451  Sum_probs=85.4

Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHc
Q 037085           15 RGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKK   94 (248)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~   94 (248)
                      +|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHc
Confidence            5899999999999999999999999998 889999999999999999999999999984 55888999999999999999


Q ss_pred             CChHHHHHHHHHHh
Q 037085           95 SRSDAFQALVDEAK  108 (248)
Q Consensus        95 ~~~~~~~~Ll~~~~  108 (248)
                      ++.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            99999999998875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=1.1e-22  Score=140.80  Aligned_cols=109  Identities=27%  Similarity=0.355  Sum_probs=95.6

Q ss_pred             hhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCC
Q 037085           45 EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGN  124 (248)
Q Consensus        45 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~  124 (248)
                      .+|.+|.||||+|+..|+.+++++|++.+ ..++.+|..|.||||+|+..++.+++++|+++|++      ++.+|..|.
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~d~~g~   76 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD------VNARSKDGN   76 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTT-CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC------TTCCCTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC------CcccCCCCC
Confidence            46788999999999999999999999884 45778889999999999999999999999998887      888999999


Q ss_pred             cHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHH
Q 037085          125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL  166 (248)
Q Consensus       125 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl  166 (248)
                      ||||+|+..++.+++++|+++|+      +++.++..|.+|-
T Consensus        77 tpl~~A~~~~~~~~~~~Ll~~ga------~~n~~~~~~~~~~  112 (115)
T 2l6b_A           77 TPEHLAKKNGHHEIVKLLDAKGA------DVNARSWGSSHHH  112 (115)
T ss_dssp             CTTHHHHTTTCHHHHHHHHTTSS------SHHHHSCCCC---
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCC------CCCcCCccccccc
Confidence            99999999999999999999998      8899999998874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=3.2e-22  Score=165.23  Aligned_cols=129  Identities=15%  Similarity=0.153  Sum_probs=116.7

Q ss_pred             CCCCcHHHHHHHh-CCHHHHHHHHHhCchhhhhhc--cCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCC
Q 037085           48 NSLMIPLHRAALE-GDSDVIRALVSICPESLEKLT--SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGN  124 (248)
Q Consensus        48 ~~g~t~L~~A~~~-g~~~~~~~Ll~~~~~~~~~~~--~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~  124 (248)
                      ..+.|+||.|+.. |+.+++++|++.+ .+++..+  ..|.||||+|+..++.+++++|+++|++      ++.+|..|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~G-advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad------vn~~d~~G~  269 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHG-ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN------VNQADSAGR  269 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTT-CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSC
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcC-CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC------CCCCCCCCC
Confidence            3456899999999 9999999999985 4577777  8899999999999999999999999988      899999999


Q ss_pred             cHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcC
Q 037085          125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQS  193 (248)
Q Consensus       125 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~  193 (248)
                      ||||+|+..|+.+++++|+++|+      +++.+|..|.||||+|+..    ++.+++++|+.++....
T Consensus       270 TpLh~A~~~g~~~~v~~LL~~Ga------d~~~~d~~G~TpL~~A~~~----g~~~iv~lLl~~~~~~~  328 (368)
T 3jue_A          270 GPLHHATILGHTGLACLFLKRGA------DLGARDSEGRDPLTIAMET----ANADIVTLLRLAKMREA  328 (368)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHC---
T ss_pred             CHHHHHHHcCcHHHHHHHHHCcC------CCCCcCCCCCCHHHHHHHC----CCHHHHHHHHHcCCCcc
Confidence            99999999999999999999998      8999999999999999988    78999999999886543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.87  E-value=4e-23  Score=171.22  Aligned_cols=154  Identities=10%  Similarity=0.075  Sum_probs=122.3

Q ss_pred             CCCHHHHHHh-CCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchh--hhhhccCCCcHHHHHH
Q 037085           16 GETTMHLLST-DGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPES--LEKLTSNGETALHLAV   92 (248)
Q Consensus        16 g~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~--~~~~~~~g~t~lh~a~   92 (248)
                      +.+++++|.. .++.++++++++++.+.        .||||+|+..|+.+++++|++.+...  ....+..|.||||+|+
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~~--------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIKS--------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCCH--------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCCc--------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence            3457777776 46778888888776654        49999999999999999999985421  1234567889999999


Q ss_pred             HcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccc--cCCCCCCHHHHHH
Q 037085           93 KKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINT--VNKQGQTALQLCN  170 (248)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~--~~~~g~tpl~~a~  170 (248)
                      ..|+.+++++|+++|++... ..++..  + .||||+|+..|+.++|++|+++|+      +++.  .|..|.||||+|+
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~-~~i~~~--~-~TpLh~Aa~~G~~eiv~~Ll~~ga------~~~~~~~d~~g~TpL~~Aa  206 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIM-AMIQAE--N-YHAFRLAAENGHLHVLNRLCELAP------TEATAMIQAENYYAFRWAA  206 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHH-HHHSHH--H-HHHHHHHHHTTCHHHHHHHHHSCG------GGHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCccc-cccCCC--C-CCHHHHHHHCCCHHHHHHHHHcCC------ccchhccCCCCCCHHHHHH
Confidence            99999999999999853110 002223  3 999999999999999999999998      6666  8888999999999


Q ss_pred             -HcCCCchHHHHHHHHHHhhhh
Q 037085          171 -ANSQDSVFKEIGWIIQRAVAQ  191 (248)
Q Consensus       171 -~~~~~~~~~~i~~~L~~~g~~  191 (248)
                       ..    ++.+++++|++.|+.
T Consensus       207 ~~~----G~~eiv~~Ll~~ga~  224 (376)
T 2aja_A          207 VGR----GHHNVINFLLDCPVM  224 (376)
T ss_dssp             STT----CCHHHHHHHTTSHHH
T ss_pred             HHC----CCHHHHHHHHhCCCc
Confidence             88    789999999998865

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=4.6e-22  Score=137.71  Aligned_cols=109  Identities=18%  Similarity=0.268  Sum_probs=99.5

Q ss_pred             hhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 037085           11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHL   90 (248)
Q Consensus        11 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~   90 (248)
                      .+|.+|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.+ ..++.+|..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHH
Confidence            46889999999999999999999999999987 788999999999999999999999999984 5588889999999999


Q ss_pred             HHHcCChHHHHHHHHHHhccccccccccccCCCCcHh
Q 037085           91 AVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVL  127 (248)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~L  127 (248)
                      |+..++.+++++|+++|++      ++.++..|.+|-
T Consensus        82 A~~~~~~~~~~~Ll~~ga~------~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGAD------VNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSS------HHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcCCC------CCcCCccccccc
Confidence            9999999999999999998      888898888873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=1.7e-19  Score=123.81  Aligned_cols=98  Identities=20%  Similarity=0.239  Sum_probs=54.4

Q ss_pred             cCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccC
Q 037085            4 LWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSN   83 (248)
Q Consensus         4 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~   83 (248)
                      +.|......|.+|.|+||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++.+|..
T Consensus        12 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~   89 (110)
T 2zgd_A           12 GLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKF   89 (110)
T ss_dssp             C---------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             CCCCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccC
Confidence            344555555666666666666666666666666666555 45566666666666666666666666665 3335555666


Q ss_pred             CCcHHHHHHHcCChHHHHHH
Q 037085           84 GETALHLAVKKSRSDAFQAL  103 (248)
Q Consensus        84 g~t~lh~a~~~~~~~~~~~L  103 (248)
                      |.||||+|+..++.+++++|
T Consensus        90 g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           90 GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             SCCHHHHHHHHTCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHh
Confidence            66666666666666666554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=3.2e-19  Score=122.43  Aligned_cols=91  Identities=26%  Similarity=0.368  Sum_probs=51.7

Q ss_pred             hhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccccccccccccc
Q 037085           79 KLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV  158 (248)
Q Consensus        79 ~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  158 (248)
                      ..+.+|.|+||+|+..|+.+++++|++.|++      ++.+|..|+||||+|+..|+.+++++|+++|+      +++.+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga------~~~~~   86 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGAD------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA------DVXAQ   86 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCC
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------Ccccc
Confidence            3455556666666666666666666655554      55555666666666666666666666666554      55556


Q ss_pred             CCCCCCHHHHHHHcCCCchHHHHHHHH
Q 037085          159 NKQGQTALQLCNANSQDSVFKEIGWII  185 (248)
Q Consensus       159 ~~~g~tpl~~a~~~~~~~~~~~i~~~L  185 (248)
                      |..|+||||+|+..    ++.+++++|
T Consensus        87 d~~g~tpl~~A~~~----~~~~~~~~L  109 (110)
T 2zgd_A           87 DKFGKTAFDISIDN----GNEDLAEIL  109 (110)
T ss_dssp             CTTSCCHHHHHHHH----TCHHHHHHH
T ss_pred             ccCCCcHHHHHHHc----CCHHHHHHh
Confidence            66666666666555    445555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.004
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 2e-12
 Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 14/184 (7%)

Query: 5   WPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSD 64
           +   A+ ++ +G T +HL + +G A MV +         L  + S + PLH  A EG   
Sbjct: 220 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVP 278

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGN 124
           V   L+      ++  T  G T LH+A         +         + +     K K G 
Sbjct: 279 VADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVK------FLLQHQADVNAKTKLGY 331

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWI 184
           + LH A       IV LL++  ++       N V+  G T L +       SV   +  +
Sbjct: 332 SPLHQAAQQGHTDIVTLLLKNGAS------PNEVSSDGTTPLAIAKRLGYISVTDVLKVV 385

Query: 185 IQRA 188
               
Sbjct: 386 TDET 389

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 5e-11
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 51  MIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSH 110
           + PLH A+  G   +++ L+     S        ET LH+A +   ++  + L+      
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----- 54

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
             +     K K+  T LH A       +V+LL+  N+N
Sbjct: 55  -NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 91

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 6e-10
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 35/189 (18%)

Query: 18  TTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESL 77
           T +H+ S  G   +V+   +         +  +  PLH AA  G ++V + L+      +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKV 59

Query: 78  EKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTW------------------- 118
                + +T LH A +   ++  + L++   +                            
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 119 --------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCN 170
                     K+G T LH+A      ++ ELL+  +++       N   K G T L +  
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH------PNAAGKNGLTPLHVAV 173

Query: 171 ANSQDSVFK 179
            ++   + K
Sbjct: 174 HHNNLDIVK 182

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 4e-08
 Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 8/152 (5%)

Query: 5   WPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSD 64
                ++ N+ G T +HL++ +G   +  +  ++   +          PLH A+  G+  
Sbjct: 253 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG-YTPLHVASHYGNIK 311

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGN 124
           +++  +      +   T  G + LH A ++  +D    L+    S  +         +G 
Sbjct: 312 LVK-FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE------VSSDGT 364

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRIN 156
           T L +A       + ++L         ++  +
Sbjct: 365 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 45/192 (23%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
           + N + ET +H+ +  G   + +   +N  ++          PLH AA  G +++++ L+
Sbjct: 28  VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQTPLHCAARIGHTNMVKLLL 86

Query: 71  SICPE--------------------------------SLEKLTSNGETALHLAVKKSRSD 98
                                                S   +T  G T LH+A K  +  
Sbjct: 87  ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 146

Query: 99  AFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV 158
             + L++      ++       K G T LH+A  +    IV+LL+    +       ++ 
Sbjct: 147 VAELLLE------RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS------PHSP 194

Query: 159 NKQGQTALQLCN 170
              G T L +  
Sbjct: 195 AWNGYTPLHIAA 206

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 2e-09
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 7/133 (5%)

Query: 47  DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
                  L  AA +G  +V++ L+      +    + G  AL  A+  S     +A+   
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
              H  +     + + G T L LA   K   +V+ L+ +       I IN  +  G+TAL
Sbjct: 205 LLDHGAD--VNVRGERGKTPLILAVEKKHLGLVQRLLEQEH-----IEINDTDSDGKTAL 257

Query: 167 QLCNANSQDSVFK 179
            L        + +
Sbjct: 258 LLAVELKLKKIAE 270

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 8e-08
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 5   WPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSD 64
             +      + G T +   +  G   +++I  +         DN     L  A L  D  
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 65  VIRALVSICPE---SLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDK 121
            + A+  +  +    +      G+T L LAV+K      Q L+++      +      D 
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND-----TDS 251

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSN 148
           +G T L LA   KLK+I ELL +  ++
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 30/158 (18%), Positives = 47/158 (29%), Gaps = 31/158 (19%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD------- 105
            L +A    D D+++ L+        +    G T LH AV+ SR D  + L+        
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 106 --------------------EAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRE 145
                                     K       D  G T    A +    + ++ L + 
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 146 NSN----RRIMIRINTVNKQGQTALQLCNANSQDSVFK 179
            +N    R+       + K G TAL          V K
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (130), Expect = 2e-09
 Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 24/172 (13%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEV---DNSLMIPLHRAALEGDSDVIR 67
             +  GE+ +       +      F      L   +   D+     LH   +        
Sbjct: 135 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 194

Query: 68  ALVSICPES------------LEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHL 115
           A      +             ++  T+  E+  +    + +    + L  +       ++
Sbjct: 195 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK---WIIANM 251

Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQ 167
              +D  G+T L++A       IV+ L+   ++          NK G   + 
Sbjct: 252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD------PFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 30/174 (17%), Positives = 51/174 (29%), Gaps = 14/174 (8%)

Query: 16  GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALE---GDSDVIRALVSI 72
           G T +H L++  +  +V+   ++        DN     L +A       DS    AL+  
Sbjct: 107 GNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDY 165

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLF-------TWKDKEGNT 125
               L    S   T LH  +  S      A            +             E  +
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFK 179
             +     +   I+E L   +    I   +N  +  G T L +       S+  
Sbjct: 226 KPNDKNGERKDSILENL---DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 276

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 49  SLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAK 108
            L   L R       ++  +L +       +  S+ +   H++      +     V++A 
Sbjct: 38  KLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQE-----VNDAF 92

Query: 109 SHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
            + + +L    D+ GNT LH  T     ++V+ L++  SN          +  G++ L  
Sbjct: 93  PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN------RLYGDNMGESCLVK 146

Query: 169 CN 170
             
Sbjct: 147 AV 148

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 10/97 (10%)

Query: 37  ENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVS--ICPESLEKLTSNGETALHLAVKK 94
           +          N      +    E    ++  L    I    L    SNG+T L++A + 
Sbjct: 210 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 269

Query: 95  SRSDAFQALVDE-AKSHRKEHLFTWKDKEGNTVLHLA 130
                  AL+D  A            +K G   +   
Sbjct: 270 GNISIVDALLDYGADPFIA-------NKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 12  KNQRGETTMHLLSTDGDARMVRIFGENNRELCL--EVDNSLMIPLHRAALEGDSDVIRAL 69
                E+  +  + +    ++           +    D++    L+ AA  G+  ++ AL
Sbjct: 219 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 70  VSICPESLEKLTSNGETALHLAV 92
           +    +       +G   +    
Sbjct: 279 LDYGAD-PFIANKSGLRPVDFGA 300

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 2e-08
 Identities = 21/165 (12%), Positives = 45/165 (27%), Gaps = 33/165 (20%)

Query: 54  LHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKE 113
           +   A  G  + ++  +        +   +  TALH A     ++  + L+        +
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 114 HLFTW---------------------------KDKEGNTVLHLATLNKLKQIVELLIREN 146
               W                            ++ G T LH A      +I  +L+   
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 147 SNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQ 191
           +N       +  +    TA+    A     +   + +       Q
Sbjct: 127 AN------PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ 165

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 13/133 (9%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
            V+ +   PLH AA +   ++   L+       +       TA+H A  K        L 
Sbjct: 98  AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHIL- 155

Query: 105 DEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQT 164
                   +     +D EGNT LHLA   +  +  +LL+ + ++      I   NK+ +T
Sbjct: 156 -----LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS------IYIENKEEKT 204

Query: 165 ALQLCNANSQDSV 177
            LQ+        +
Sbjct: 205 PLQVAKGGLGLIL 217

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 7e-05
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 11  IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
             NQ G T +H  ++     +  +  E         D+     +HRAA +G+  +I  L+
Sbjct: 98  AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHILL 156

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLA 130
                +  +  + G T LHLA  + R +  + LV +  S         ++KE  T L +A
Sbjct: 157 YYKASTNIQ-DTEGNTPLHLACDEERVEEAKLLVSQGASIYI------ENKEEKTPLQVA 209

Query: 131 TLNKLKQIVELLI 143
               L  I++ ++
Sbjct: 210 K-GGLGLILKRMV 221

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 9e-08
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 115 LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
           +F +  ++G+T LHLA +++ +  ++ L+  ++       ++  N  GQTAL L 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLA 52

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 8/110 (7%)

Query: 46  VDNSLMIPLHRAALEGDSDVIRALVSIC--PESLEKLTSNGETALHLAVKKSRSDAFQAL 103
           V       LH A +      +  L+      E L+     G+TALHLA     +   + L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 104 VDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMI 153
                                   HLA   +      +L++   +     
Sbjct: 65  YAAGAGVLVAERGGHTAL------HLACRVRAHTCACVLLQPRPSHPRDA 108

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 77  LEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLN 133
              +T +G+TALHLAV          L+  +  H        ++  G T LHLA + 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAIL 55

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 5   WPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSD 64
                  +  +G T +H  +   +  +V+           + D     P+  AA EG  +
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQAL 103
           V+  L+      +E + +   TA  LA   +  +     
Sbjct: 236 VVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 5e-07
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 8/104 (7%)

Query: 85  ETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
           E+ + L  + + S A    +       +E +     +   TVLH    N   +  E LI 
Sbjct: 1   ESPIKLHTEAAGSYAITEPIT------RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV 54

Query: 145 ENSNRRIM--IRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQ 186
             +   I     +N ++    T L L     +  +   +     
Sbjct: 55  HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 98

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 5e-07
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 47  DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
                  LH AA   +  +++ LV     + +K   +G+T + LA ++ R +    L+ +
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
             S          D   +T   LA  N    IV++  R
Sbjct: 244 GAS------VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 11/107 (10%)

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATL 132
                +     G TALH A + S     + LV E  S+        +D++G T + LA  
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-----KDKQDEDGKTPIMLAAQ 230

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFK 179
               ++V  LI++ ++      +  V+    TA QL  AN+  ++  
Sbjct: 231 EGRIEVVMYLIQQGAS------VEAVDATDHTARQLAQANNHHNIVD 271

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 5/79 (6%)

Query: 52  IPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHR 111
           I LH  A  G   +   +       ++    +  T LH     S ++  + L+       
Sbjct: 4   IKLHTEAA-GSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 112 KEHLF--TWKDKEGNTVLH 128
                     D + NT L 
Sbjct: 61  IAAGADVNAMDCDENTPLM 79

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.4 bits (111), Expect = 4e-07
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 45  EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
               S    LH AA +G ++V++ L+    + +     +G T LH A    + +A + LV
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILV 252

Query: 105 DEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN 146
           +              +K G T   +A  + L  + EL  ++N
Sbjct: 253 ENLCD------MEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.9 bits (102), Expect = 6e-06
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 12/100 (12%)

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATL 132
              +  +   +G TALH+A  K  ++  + L       +  +    KD +G T LH A  
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLL------IQARYDVNIKDYDGWTPLHAAAH 241

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
              ++   +L+    +      +  VNK GQTA  + + +
Sbjct: 242 WGKEEACRILVENLCD------MEAVNKVGQTAFDVADED 275

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 28/224 (12%), Positives = 53/224 (23%), Gaps = 25/224 (11%)

Query: 10  SIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRAL 69
           +I+N   +  + L+       + + F   N    + +     I +     +    V + L
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLL 65

Query: 70  VS----------ICPESLEKLTSNGETALHLAVKKSRSDA---FQALVDEAKSHRKEHLF 116
                              K     E    +A     S A      L+   +  +     
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV---- 121

Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDS 176
                E      LA  N    ++  L            +  +  +   A +L   N    
Sbjct: 122 --IQAENYQAFRLAAENGHLHVLNRLCELAPTE----IMAMIQAENYHAFRLAAENGHLH 175

Query: 177 VFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTRWPIETRNVLL 220
           V   +           +    +   A       R      N LL
Sbjct: 176 VLNRL--CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 217

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.2 bits (98), Expect = 3e-05
 Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 12/109 (11%)

Query: 9   ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEV--------DNSLMIPLHRAALE 60
                ++          +    M   F  +N +   ++           ++  L R   E
Sbjct: 230 EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE 289

Query: 61  GDSDVIRALVSICPE----SLEKLTSNGETALHLAVKKSRSDAFQALVD 105
              D IR L+SI           +  +    L LA++     A   L+ 
Sbjct: 290 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 11/97 (11%), Positives = 23/97 (23%), Gaps = 8/97 (8%)

Query: 47  DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
              +      +  +G  D++                     L     +   D  + L+  
Sbjct: 249 LKEMHDAFKLSNPDGVFDLVTKSEC-------LQGFYMLRNLIRRNDEVLLDDIRFLLSI 301

Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
                          + N +L LA     +    LL+
Sbjct: 302 PGIKALAPT-ATIPGDANELLRLALRLGNQGACALLL 337

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 13/66 (19%), Positives = 28/66 (42%)

Query: 53  PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
           PLH+A +E +   ++ L+   P  L +   +G   LH +V     +    L+ + ++   
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 113 EHLFTW 118
           +     
Sbjct: 63  DDYPDD 68

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 16/90 (17%), Positives = 33/90 (36%)

Query: 5   WPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSD 64
                 IK++  +  +H  ++ G  +++ +     +      D     PL  A  EG  D
Sbjct: 127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 186

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKK 94
               LV       + + + G  A  +A+ +
Sbjct: 187 AAVLLVEKYGAEYDLVDNKGAKAEDVALNE 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 7e-04
 Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 10/86 (11%)

Query: 83  NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
             +  LH A            + E      +    W+DK+G T L  A          LL
Sbjct: 137 FNQIPLHRAASV-----GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 191

Query: 143 IRENSNRRIMIRINTVNKQGQTALQL 168
           + +          + V+ +G  A  +
Sbjct: 192 VEKYG-----AEYDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 43  CLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQA 102
               D    IPLHRAA  G   +I  L  +   ++      G T L  A+ +   DA   
Sbjct: 131 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 190

Query: 103 LVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
           LV++  +      +   D +G     +A   +   + +  +
Sbjct: 191 LVEKYGAE-----YDLVDNKGAKAEDVALNEQ---VKKFFL 223

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 5e-05
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 83  NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLN 133
           +G+T LH+AV +    A   LV+  +   +E      +    T LHLA + 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE--LDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 9e-05
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 53 PLHRAALEGDSDVIRALVSICPES---LEKLTSNGETALHLAVKK 94
          PLH A ++G+   +  LV++  +    L+   +  +T LHLAV  
Sbjct: 6  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 2/92 (2%)

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEI 181
           +G+T LH+A +      V  L+           ++  N   QT L L    +  SV + +
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGG--RELDIYNNLRQTPLHLAVITTLPSVVRLL 59

Query: 182 GWIIQRAVAQQSPQLPDAGSANVSWNQTRWPI 213
                  +A        A  A    + T    
Sbjct: 60  VTAGASPMALDRHGQTAAHLACEHRSPTCLRA 91

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 8e-04
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 12/129 (9%)

Query: 51  MIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSH 110
           +  LH A      + ++ L+    +       +G + L  AV+ +     Q L       
Sbjct: 111 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL------L 164

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCN 170
           +       +   G++ LH A+   L  +V  L+R  ++       +  N    T L +  
Sbjct: 165 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD------SSLKNCHNDTPLMVAR 218

Query: 171 ANSQDSVFK 179
           +     + +
Sbjct: 219 SRRVIDILR 227

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 83  NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLA 130
           +G++ LHLA+          ++ + K         +++    T LHLA
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 51  MIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSH 110
              LH A++ G   ++  LVS+  +   +   NG TALHLAV     D            
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS------LLL 165

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
           +          +G +   L       +I + L +
Sbjct: 166 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 7e-04
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEI 181
           +G++ LHLA +++ K +   +IR+         +N  N   QT L L    +Q  + + +
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLAVITNQPEIAEAL 58

Query: 182 GW 183
             
Sbjct: 59  LG 60

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 35/138 (25%)

Query: 47  DNSLMIPLHRAALEGDSDVIRALVS-----ICPESLEKLTSNGETALHLAVKKSRSDAFQ 101
             + +  L  A    D   +    +          L       ETALHLAV+     +  
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 102 ---------ALVDEAKSHRKEHLFTWK---------------------DKEGNTVLHLAT 131
                      +D+        L                         ++ G T L +A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 132 LNKLKQIVELLIRENSNR 149
             K +   ELL +  S R
Sbjct: 123 RLKHEHCEELLTQALSGR 140

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 110 HRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
                    ++ +G+T   LA L    ++V L+ 
Sbjct: 120 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-33  Score=216.37  Aligned_cols=187  Identities=20%  Similarity=0.240  Sum_probs=172.5

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT   81 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   81 (248)
                      |+..+..++.+|.+|+||||+|+..|+.++++++++.+... ...+..+.++++.++..++.+++++|++.+ .+++.+|
T Consensus        23 l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~-~d~~~~d  100 (223)
T d1uoha_          23 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALLGKG-AQVNAVN  100 (223)
T ss_dssp             HHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccccccchhHHHhccC-ceeEeeC
Confidence            55678889999999999999999999999999999998887 667778899999999999999999999985 4688899


Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCC
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ  161 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  161 (248)
                      ..|.||||+|+..++.+++++|+++|++      ++.++..|.||||+|+..++.+++++|++.+.      +++.+|..
T Consensus       101 ~~g~tpL~~A~~~~~~e~~~~Ll~~g~d------~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~------~i~~~d~~  168 (223)
T d1uoha_         101 QNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYEATAMHRAAAKGNLKMIHILLYYKA------STNIQDTE  168 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CSCCCCTT
T ss_pred             CCCCchhhHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCccchhhhhcCCcchhhhhccccc------eeeeccCC
Confidence            9999999999999999999999999988      78899999999999999999999999999987      89999999


Q ss_pred             CCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccc
Q 037085          162 GQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       162 g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                      |.||||+|+..    ++.+++++|+++|++++..+..+.+ |++.+
T Consensus       169 g~TpL~~Aa~~----g~~~~v~~LL~~Gad~~~~d~~g~t-pl~~A  209 (223)
T d1uoha_         169 GNTPLHLACDE----ERVEEAKLLVSQGASIYIENKEEKT-PLQVA  209 (223)
T ss_dssp             CCCHHHHHHHT----TCHHHHHHHHHTTCCSCCCCTTSCC-HHHHC
T ss_pred             CCceecccccc----CcHHHHHHHHHCCCCCCCCCCCCCC-HHHHH
Confidence            99999999988    7889999999999999988877666 77766

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-33  Score=218.51  Aligned_cols=188  Identities=20%  Similarity=0.214  Sum_probs=156.7

Q ss_pred             hccCCCCHHHHHHhCCCHHHHHHHHhcCcc--hhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHH
Q 037085           12 KNQRGETTMHLLSTDGDARMVRIFGENNRE--LCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALH   89 (248)
Q Consensus        12 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh   89 (248)
                      .+.+|.||||+||.+|+.+++++|++.+++  ..+.+|..|.||||+|+..|+.+++++|++.+ .+++..|..|.||||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g-a~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVAERGGHTALH   83 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTSCCHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccc-ccccccccccchhhh
Confidence            578999999999999999999999998765  33677889999999999999999999999984 557888999999999


Q ss_pred             HHHHcCChHHHHHHHHHHhccc-----------------------------------------cccccccccCCCCcHhH
Q 037085           90 LAVKKSRSDAFQALVDEAKSHR-----------------------------------------KEHLFTWKDKEGNTVLH  128 (248)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~-----------------------------------------~~~~~~~~~~~g~t~Lh  128 (248)
                      +|+..++.+++++|++.+....                                         ....++.+|..|.||||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence            9999999999998865432211                                         33345678899999999


Q ss_pred             HHHhCCcHHHHHHHHhhccccccccccc-ccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCcccccc
Q 037085          129 LATLNKLKQIVELLIRENSNRRIMIRIN-TVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWN  207 (248)
Q Consensus       129 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~-~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  207 (248)
                      +|+..++.+++++|++.++      +.+ ..+..|.||||+|+..    ++.+++++|+++|++++.+...+.+ |++.+
T Consensus       164 ~A~~~~~~~~v~~Ll~~~~------~~~~~~~~~g~TpL~~A~~~----~~~~~v~~Ll~~gadin~~d~~g~t-~L~~A  232 (255)
T d1oy3d_         164 VAVIHKDAEMVRLLRDAGA------DLNKPEPTCGRTPLHLAVEA----QAASVLELLLKAGADPTARMYGGRT-PLGSA  232 (255)
T ss_dssp             HHHHTTCHHHHHHHHHHTC------CTTCCCTTTCCCHHHHHHHT----TCHHHHHHHHHTTCCTTCCCTTSCC-HHHHH
T ss_pred             ccccccccccccchhcccc------cccccccccccccccccccc----cHHHHHHHHHHCCCCCCCCCCCCCC-HHHHH
Confidence            9999999999999999987      444 4567899999999987    6789999999999999888766555 78766


Q ss_pred             ccCC
Q 037085          208 QTRW  211 (248)
Q Consensus       208 ~~~~  211 (248)
                      ....
T Consensus       233 ~~~~  236 (255)
T d1oy3d_         233 LLRP  236 (255)
T ss_dssp             HTSS
T ss_pred             HHCC
Confidence            5443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-33  Score=218.25  Aligned_cols=170  Identities=22%  Similarity=0.230  Sum_probs=151.4

Q ss_pred             chhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCc-----------
Q 037085            6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICP-----------   74 (248)
Q Consensus         6 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~-----------   74 (248)
                      +..++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..++.++++.|++...           
T Consensus        35 ~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  113 (255)
T d1oy3d_          35 HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL  113 (255)
T ss_dssp             SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----
T ss_pred             cccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhh
Confidence            5567788999999999999999999999999999998 7889999999999999999999999875421           


Q ss_pred             -----------------------------------hhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccc
Q 037085           75 -----------------------------------ESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWK  119 (248)
Q Consensus        75 -----------------------------------~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  119 (248)
                                                         ...+.++..|.||||+|+..++.+++++|++.+...     ....
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~-----~~~~  188 (255)
T d1oy3d_         114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-----NKPE  188 (255)
T ss_dssp             ------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-----TCCC
T ss_pred             hHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccc-----cccc
Confidence                                               111345678999999999999999999999998773     3346


Q ss_pred             cCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhh
Q 037085          120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQ  191 (248)
Q Consensus       120 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~  191 (248)
                      +..|.||||+|+..++.+++++|+++|+      +++.+|..|+||||+|+..    ++.+++++|+++||+
T Consensus       189 ~~~g~TpL~~A~~~~~~~~v~~Ll~~ga------din~~d~~g~t~L~~A~~~----~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         189 PTCGRTPLHLAVEAQAASVLELLLKAGA------DPTARMYGGRTPLGSALLR----PNPILARLLRAHGAP  250 (255)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHTS----SCHHHHHHHHHTTCC
T ss_pred             cccccccccccccccHHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHC----CCHHHHHHHHHcCCC
Confidence            7889999999999999999999999997      8999999999999999988    789999999999996

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=188.60  Aligned_cols=154  Identities=21%  Similarity=0.249  Sum_probs=143.9

Q ss_pred             CHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCCh
Q 037085           18 TTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS   97 (248)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~   97 (248)
                      ++||+|+..|+.++|+.|+++|.++ +.+|..|.||||+|+ .|+.+++++|++.+ .+++.++..+.++++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~-a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRG-ANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccc-cccccccccCccccccccccccc
Confidence            8999999999999999999999998 889999999999886 78999999999985 45788899999999999999999


Q ss_pred             HHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCch
Q 037085           98 DAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSV  177 (248)
Q Consensus        98 ~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~  177 (248)
                      +.++.++.++.+      ++..+..|.+|+|+|+..++.+++++|+++++     .+++.+|..|+||||+|+..    +
T Consensus        80 ~~~~~l~~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~-----~~~~~~d~~g~TpL~~A~~~----~  144 (156)
T d1ihba_          80 DTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA-----SNVGHRNHKGDTACDLARLY----G  144 (156)
T ss_dssp             HHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC-----CCTTCCCTTSCCHHHHHHHT----T
T ss_pred             cccccccccccc------cccccccccccccccccccccccccccccccc-----ccccccCCCCCCHHHHHHHc----C
Confidence            999999998877      88899999999999999999999999999987     37899999999999999988    7


Q ss_pred             HHHHHHHHHHhh
Q 037085          178 FKEIGWIIQRAV  189 (248)
Q Consensus       178 ~~~i~~~L~~~g  189 (248)
                      +.+++++|+++|
T Consensus       145 ~~~iv~~Ll~~G  156 (156)
T d1ihba_         145 RNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTC
T ss_pred             CHHHHHHHHhcC
Confidence            899999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=9.4e-30  Score=202.42  Aligned_cols=183  Identities=17%  Similarity=0.180  Sum_probs=159.6

Q ss_pred             cCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHH
Q 037085           14 QRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVK   93 (248)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~   93 (248)
                      .++.|+|+.||..|+.++|++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++++. .....+..+.+||+.++.
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGA-NINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeeccccc-cccccccccccccccccc
Confidence            45669999999999999999999999998 7899999999999999999999999999854 466778889999999999


Q ss_pred             cCChHHHHHHHHHHhccc------------------------------------------------------cccccccc
Q 037085           94 KSRSDAFQALVDEAKSHR------------------------------------------------------KEHLFTWK  119 (248)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~------------------------------------------------------~~~~~~~~  119 (248)
                      .++.++++.|++++....                                                      ........
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            999999999988765432                                                      11223456


Q ss_pred             cCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCC
Q 037085          120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDA  199 (248)
Q Consensus       120 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~  199 (248)
                      +..|.||||+|+..|+.+++++|++.|+      |++.++..|+||||+|+..    ++.+++++|+++|++++.++..+
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~g~------din~~~~~g~TpL~~A~~~----g~~~iv~lLl~~Gadv~~~d~~G  265 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQARY------DVNIKDYDGWTPLHAAAHW----GKEEACRILVENLCDMEAVNKVG  265 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTC------CTTCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCCCChhhHHHHcCChhhhccccccee------cccccccCCCCHHHHHHHc----CCHHHHHHHHHCCCCCCCcCCCC
Confidence            7889999999999999999999999997      8999999999999999988    78999999999999999887655


Q ss_pred             CCcccccccc
Q 037085          200 GSANVSWNQT  209 (248)
Q Consensus       200 ~~~~~~~~~~  209 (248)
                      . ++++.+..
T Consensus       266 ~-TaL~~A~e  274 (291)
T d1s70b_         266 Q-TAFDVADE  274 (291)
T ss_dssp             C-CTTTSCCS
T ss_pred             C-CHHHHHHH
Confidence            5 58888753

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=2e-30  Score=204.62  Aligned_cols=163  Identities=20%  Similarity=0.236  Sum_probs=137.0

Q ss_pred             cCCCCHHHHHHhCCCHHHHHHH--------HhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCC
Q 037085           14 QRGETTMHLLSTDGDARMVRIF--------GENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGE   85 (248)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~L--------l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   85 (248)
                      .+|+||||+|+..|+.++++.|        ++.|+++ +.+|.+|.||||+|+..|+.+++++|++++ .+++.++..|.
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G-ad~n~~~~~g~  108 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAG-ADPTIYNKSER  108 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeeccccccccccccccccccc-ccccccccccc
Confidence            4699999999999999888776        4556777 778999999999999999999999999985 45788888999


Q ss_pred             cHHHHHHHcCChHHHHHHHHHHhccc------------------------------------------------------
Q 037085           86 TALHLAVKKSRSDAFQALVDEAKSHR------------------------------------------------------  111 (248)
Q Consensus        86 t~lh~a~~~~~~~~~~~Ll~~~~~~~------------------------------------------------------  111 (248)
                      ||+++|+..++.++++.+...+....                                                      
T Consensus       109 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  188 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR  188 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred             ccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCC
Confidence            99999998888877776654321100                                                      


Q ss_pred             ---------------------cccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHH
Q 037085          112 ---------------------KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCN  170 (248)
Q Consensus       112 ---------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~  170 (248)
                                           .....+.+|..|+||||+|+..|+.+++++|+++|+      |++.+|..|+||||+|+
T Consensus       189 t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~ga------din~~d~~G~T~L~~A~  262 (277)
T d2fo1e1         189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA------SVEAVDATDHTARQLAQ  262 (277)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CSSCCCSSSCCHHHHHH
T ss_pred             CccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcC------CCCCcCCCCCCHHHHHH
Confidence                                 233455689999999999999999999999999998      89999999999999999


Q ss_pred             HcCCCchHHHHHHHHHHh
Q 037085          171 ANSQDSVFKEIGWIIQRA  188 (248)
Q Consensus       171 ~~~~~~~~~~i~~~L~~~  188 (248)
                      ..    ++.+|+++|+++
T Consensus       263 ~~----~~~~iv~lL~~c  276 (277)
T d2fo1e1         263 AN----NHHNIVDIFDRC  276 (277)
T ss_dssp             HT----TCHHHHHHHHTT
T ss_pred             Hc----CCHHHHHHHHHh
Confidence            98    789999999864

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.8e-30  Score=195.08  Aligned_cols=176  Identities=23%  Similarity=0.230  Sum_probs=151.6

Q ss_pred             CchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCch-----hhhh
Q 037085            5 WPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE-----SLEK   79 (248)
Q Consensus         5 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~-----~~~~   79 (248)
                      ++..++.+|.+|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||.++..++.++++.|+..+..     ....
T Consensus        28 ~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  106 (221)
T d1iknd_          28 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA  106 (221)
T ss_dssp             -CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC
T ss_pred             CCCCcccCCCCCCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhcccccccccccc
Confidence            34457788999999999999999999999999999998 78899999999999999999999999986422     2334


Q ss_pred             hccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccc-cCCCCcHhHHHHhCCcHHHHHHHHhhccccccccccccc
Q 037085           80 LTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWK-DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV  158 (248)
Q Consensus        80 ~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  158 (248)
                      ....|.||||.|+..++.+++++++..+..      ++.. +.+|.||||+|++.|+.+++++|+++|+      |++.+
T Consensus       107 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~------~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~ga------d~~~~  174 (221)
T d1iknd_         107 TNYNGHTCLHLASIHGYLGIVELLVSLGAD------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA------DVNRV  174 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC------CSCCC
T ss_pred             cccccchhhhHHhhcCChhheeeecccCcc------cccccccCCCCccccccccccHHHHHHHHhcCC------ccccc
Confidence            455689999999999999999999998877      5544 4679999999999999999999999998      89999


Q ss_pred             CCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCC
Q 037085          159 NKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLP  197 (248)
Q Consensus       159 ~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~  197 (248)
                      |..|+||||+|+..    +..+++++|.+.+.+.....+
T Consensus       175 ~~~G~tpl~~A~~~----~~~~~~~~l~~~~~~~~~~~~  209 (221)
T d1iknd_         175 TYQGYSPYQLTWGR----PSTRIQQQLGQLTLENLQMLP  209 (221)
T ss_dssp             CTTCCCGGGGCTTS----SCHHHHHHHHTTSCGGGSSCC
T ss_pred             CCCCCCHHHHHHHC----CCHHHHHHHHHcCCccccccc
Confidence            99999999999876    688999999998777555444

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.4e-29  Score=180.22  Aligned_cols=150  Identities=25%  Similarity=0.268  Sum_probs=137.8

Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCC
Q 037085           17 ETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSR   96 (248)
Q Consensus        17 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~   96 (248)
                      .||||.|++.|+.++|++|++++++. . .|..|.||||+|+..++.++++.++..... ....+..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCcccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            48999999999999999999999976 3 699999999999999999999999987443 45667788999999999999


Q ss_pred             hHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCc
Q 037085           97 SDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDS  176 (248)
Q Consensus        97 ~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~  176 (248)
                      .+++++++.++.+      .+.+|..|.||||+|+..|+.+++++|+++|+      |++.+|..|.||||+|+.+    
T Consensus        80 ~~~~~~l~~~~~~------~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga------d~~~~d~~g~Tpl~~A~~~----  143 (153)
T d1awcb_          80 ANIVEVLLKHGAD------VNAKDMLKMTALHWATEHNHQEVVELLIKYGA------DVHTQSKFCKTAFDISIDN----  143 (153)
T ss_dssp             HHHHHHHHTTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHT----
T ss_pred             ceeeecccccCCc------cccccccCchHHHhhhhcchhheeeecccccc------CCcccCCCCCCHHHHHHHc----
Confidence            9999999998877      78899999999999999999999999999998      8999999999999999988    


Q ss_pred             hHHHHHHHH
Q 037085          177 VFKEIGWII  185 (248)
Q Consensus       177 ~~~~i~~~L  185 (248)
                      ++.+|+++|
T Consensus       144 g~~eiv~lL  152 (153)
T d1awcb_         144 GNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHhC
Confidence            788999876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-29  Score=193.55  Aligned_cols=184  Identities=22%  Similarity=0.241  Sum_probs=154.5

Q ss_pred             CCCCHHHHHHhCCCHHH----HHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 037085           15 RGETTMHLLSTDGDARM----VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHL   90 (248)
Q Consensus        15 ~g~t~L~~A~~~g~~~~----v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~   90 (248)
                      +|.||||+|+..|+.++    ++.+...+..+ +.+|.+|.||||+|+..|+.+++++|++.+. +++.+|..|.||||+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~-d~~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGC-DPELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-CSCCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccccccccccccccc-ccccccccccccccc
Confidence            69999999999999654    55555667776 7889999999999999999999999999854 578889999999999


Q ss_pred             HHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccC-CCCCCHHHHH
Q 037085           91 AVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KQGQTALQLC  169 (248)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~-~~g~tpl~~a  169 (248)
                      ++..++.++++.|+..+...............|.||||.|+..++.+++++|++.|+      +++..+ .+|.||||+|
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~------~~~~~~~~~G~T~L~~A  152 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA------DVNAQEPCNGRTALHLA  152 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC------CTTCCCTTTCCCHHHHH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCc------ccccccccCCCCccccc
Confidence            999999999999999876655555566677789999999999999999999999987      565554 5799999999


Q ss_pred             HHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccccCC
Q 037085          170 NANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTRW  211 (248)
Q Consensus       170 ~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  211 (248)
                      +..    ++.+++++|+++|++++.+..++.+ |++.+....
T Consensus       153 ~~~----g~~~~v~~Ll~~gad~~~~~~~G~t-pl~~A~~~~  189 (221)
T d1iknd_         153 VDL----QNPDLVSLLLKCGADVNRVTYQGYS-PYQLTWGRP  189 (221)
T ss_dssp             HHT----TCHHHHHHHHTTTCCSCCCCTTCCC-GGGGCTTSS
T ss_pred             ccc----ccHHHHHHHHhcCCcccccCCCCCC-HHHHHHHCC
Confidence            988    7889999999999999888766655 888765443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.8e-28  Score=187.27  Aligned_cols=191  Identities=24%  Similarity=0.202  Sum_probs=152.2

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchh--hhhcCCCCcHHHHHHHhCCHHHHHHHHHhCch-hhh
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELC--LEVDNSLMIPLHRAALEGDSDVIRALVSICPE-SLE   78 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~-~~~   78 (248)
                      |+.+|..++.+|.+|+||||+|+..|+.+++++|+++++++.  ...+..|.+|+|+++..+..++++.++..+.. ...
T Consensus        20 l~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (229)
T d1ixva_          20 LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN   99 (229)
T ss_dssp             HHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTT
T ss_pred             HHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            345666777778888888888888888888888888776542  34566777888888888888888777765432 234


Q ss_pred             hhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccccccccccccc
Q 037085           79 KLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV  158 (248)
Q Consensus        79 ~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  158 (248)
                      ..+..+.++++.++..++.++++.|+..+..      .+..|..|+||||+|+..++.+++++|++.+..     +++.+
T Consensus       100 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----~in~~  168 (229)
T d1ixva_         100 KITNQGVTCLHLAVGKKWFEVSQFLIENGAS------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQ  168 (229)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC-----CSCCC
T ss_pred             ccccccccccccccccchhhhhhhhhhhccc------ccccCCCCCCccchhhhcccccccccccccccc-----ccccc
Confidence            4566778888888888888888888888776      777899999999999999999999999998752     78999


Q ss_pred             CCCCCCHHHHHHHcCCCchHHHHHHHHHH-hhhhcCCCCCCCCCccccccc
Q 037085          159 NKQGQTALQLCNANSQDSVFKEIGWIIQR-AVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       159 ~~~g~tpl~~a~~~~~~~~~~~i~~~L~~-~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      |..|+||||+|+..    ++.+++++|++ .|++++.....+.+ +++.+.
T Consensus       169 d~~g~TpLh~A~~~----~~~~~v~~Ll~~~gad~~~~d~~g~t-~l~~A~  214 (229)
T d1ixva_         169 DKQGWTPLFHALAE----GHGDAAVLLVEKYGAEYDLVDNKGAK-AEDVAL  214 (229)
T ss_dssp             CTTSCCHHHHHHHT----TCHHHHHHHHHHHCCCSCCCCTTSCC-TGGGCS
T ss_pred             ccccCCchhhhccc----ccHHHHHHHHHhcCCCCCCcCCCCCC-HHHHHh
Confidence            99999999999988    78899999996 69999988765554 887664

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-28  Score=186.74  Aligned_cols=176  Identities=16%  Similarity=0.205  Sum_probs=158.9

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcC
Q 037085           16 GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKS   95 (248)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~   95 (248)
                      +.+.||.++..|+.+.++.++...+...+.+|..|+||||+|+..|+.+++++|+... ......+..+.++++.++..+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccc-ccccccccccccccccccccc
Confidence            4688999999999999999998888777999999999999999999999999999984 445666778899999999999


Q ss_pred             ChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCC
Q 037085           96 RSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQD  175 (248)
Q Consensus        96 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~  175 (248)
                      +.+++++|++++.+      ++.+|.+|.||||+|+..++.+++++|+++|+      +++.++..|.||||+|+..   
T Consensus        82 ~~~i~~~Ll~~~~d------~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~------d~~~~~~~~~t~L~~a~~~---  146 (223)
T d1uoha_          82 RDEIVKALLGKGAQ------VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA------NPDAKDHYEATAMHRAAAK---  146 (223)
T ss_dssp             CHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHT---
T ss_pred             ccchhHHHhccCce------eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCccchhhhhc---
Confidence            99999999999887      88999999999999999999999999999997      7899999999999999988   


Q ss_pred             chHHHHHHHHHHhhhhcCCCCCCCCCcccccccc
Q 037085          176 SVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQT  209 (248)
Q Consensus       176 ~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~  209 (248)
                       +..+++++|.+.|.+++.....+.+ |++.+..
T Consensus       147 -~~~~~~~~L~~~~~~i~~~d~~g~T-pL~~Aa~  178 (223)
T d1uoha_         147 -GNLKMIHILLYYKASTNIQDTEGNT-PLHLACD  178 (223)
T ss_dssp             -TCHHHHHHHHHTTCCSCCCCTTCCC-HHHHHHH
T ss_pred             -CCcchhhhhccccceeeeccCCCCc-eeccccc
Confidence             6788999999999999888877665 7766543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.8e-29  Score=180.40  Aligned_cols=152  Identities=18%  Similarity=0.196  Sum_probs=137.2

Q ss_pred             CHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCCh
Q 037085           18 TTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS   97 (248)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~   97 (248)
                      +.|+.|+..|+.++|+.|++.+....+.+|..|.||||+|+ .|+.+++++|++.+. +++..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGA-SPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccc-cccccccccccccccccccccc
Confidence            45999999999999999998755444889999999999987 589999999999854 5788889999999999999999


Q ss_pred             HHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCch
Q 037085           98 DAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSV  177 (248)
Q Consensus        98 ~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~  177 (248)
                      ++++.+++++++      ++.+|..|.||||+|+..|+.+++++|+ .|+      +++.+|.+|+||||+|+..    +
T Consensus        82 ~~~~~~l~~~~~------~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~------~~~~~d~~G~TpL~~A~~~----g  144 (156)
T d1bd8a_          82 DTLKVLVEHGAD------VNVPDGTGALPIHLAVQEGHTAVVSFLA-AES------DLHRRDARGLTPLELALQR----G  144 (156)
T ss_dssp             HHHHHHHHTTCC------SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTS------CTTCCCTTSCCHHHHHHHS----C
T ss_pred             cccccccccccc------cccccCCCCeeecccccccccccccccc-ccc------cccccCCCCCCHHHHHHHc----C
Confidence            999999999887      8889999999999999999999999887 565      7899999999999999998    7


Q ss_pred             HHHHHHHHHHh
Q 037085          178 FKEIGWIIQRA  188 (248)
Q Consensus       178 ~~~i~~~L~~~  188 (248)
                      +.+|+++|+++
T Consensus       145 ~~~iv~~Ll~h  155 (156)
T d1bd8a_         145 AQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT
T ss_pred             CHHHHHHHHhh
Confidence            89999999865

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.3e-28  Score=186.63  Aligned_cols=166  Identities=18%  Similarity=0.239  Sum_probs=141.7

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHH----------------
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDV----------------   65 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~----------------   65 (248)
                      |++.+++....|.+|.||||+||..|+.+++++|++.++.+ +.++..+.++++.++..++...                
T Consensus         9 l~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (209)
T d1ot8a_           9 LAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARM   87 (209)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCC
T ss_pred             HHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-cccccccccccccccccccccccccccccccccccccc
Confidence            44455543457999999999999999999999999999988 6778888888887777665554                


Q ss_pred             ------------------HHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHh
Q 037085           66 ------------------IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVL  127 (248)
Q Consensus        66 ------------------~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~L  127 (248)
                                        .+.|+.. +..++.++..|.|||++++..+..++++.++..+.+      ++..|..|.|||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~------~~~~d~~g~TpL  160 (209)
T d1ot8a_          88 HDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN------RDAQDDKDETPL  160 (209)
T ss_dssp             TTCCCHHHHHHHTTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHH
T ss_pred             ccccccccccccccchhhhhhhhhh-cccccccCCCCCCcchhhcccCcceeeeeecccccc------cccccccccccc
Confidence                              3334443 334566788899999999999999999999999887      888999999999


Q ss_pred             HHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHH
Q 037085          128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWII  185 (248)
Q Consensus       128 h~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L  185 (248)
                      |+|+..|+.+++++|+++|+      |++.+|..|+||||+|+.+    ++.+|+++|
T Consensus       161 ~~A~~~g~~~~v~~Ll~~ga------d~n~~d~~g~Tpl~~A~~~----~~~~iv~lL  208 (209)
T d1ot8a_         161 FLAAREGSYEASKALLDNFA------NREITDHMDRLPRDVASER----LHHDIVRLL  208 (209)
T ss_dssp             HHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHT----TCHHHHHHH
T ss_pred             chhccccHHHHHHHHHHCCC------CCCCcCCCCCCHHHHHHHc----CCHHHHhhc
Confidence            99999999999999999998      8999999999999999998    788999876

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-28  Score=202.79  Aligned_cols=195  Identities=20%  Similarity=0.259  Sum_probs=140.8

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchh------------
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPES------------   76 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~------------   76 (248)
                      ++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|+......            
T Consensus        26 in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~  104 (408)
T d1n11a_          26 PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH  104 (408)
T ss_dssp             SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhh
Confidence            4566777888888888888888888888887776 667777888888888888888888777652210            


Q ss_pred             -----------------------------------------------------hhhhccCCCcHHHHHHHcCChHHHHHH
Q 037085           77 -----------------------------------------------------LEKLTSNGETALHLAVKKSRSDAFQAL  103 (248)
Q Consensus        77 -----------------------------------------------------~~~~~~~g~t~lh~a~~~~~~~~~~~L  103 (248)
                                                                           ++..+.+|.+|||+|+..++.+++++|
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~L  184 (408)
T d1n11a_         105 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL  184 (408)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHH
Confidence                                                                 012234566777777777777777777


Q ss_pred             HHHHhccc------------------------------------------------------------cccccccccCCC
Q 037085          104 VDEAKSHR------------------------------------------------------------KEHLFTWKDKEG  123 (248)
Q Consensus       104 l~~~~~~~------------------------------------------------------------~~~~~~~~~~~g  123 (248)
                      +.+|+++.                                                            .....+..+..|
T Consensus       185 l~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g  264 (408)
T d1n11a_         185 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG  264 (408)
T ss_dssp             GGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTC
T ss_pred             HhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCC
Confidence            76654432                                                            111233456677


Q ss_pred             CcHhHHHHhCCcHHHHHHHHhhccccc---------------------------ccccccccCCCCCCHHHHHHHcCCCc
Q 037085          124 NTVLHLATLNKLKQIVELLIRENSNRR---------------------------IMIRINTVNKQGQTALQLCNANSQDS  176 (248)
Q Consensus       124 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~~---------------------------~~~~~~~~~~~g~tpl~~a~~~~~~~  176 (248)
                      .|||+.|+..++.+++++|+++|+++.                           .+.+++.+|..|+||||+|+..    
T Consensus       265 ~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~----  340 (408)
T d1n11a_         265 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ----  340 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----
T ss_pred             CChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHc----
Confidence            778888888888888888887776421                           2457889999999999999988    


Q ss_pred             hHHHHHHHHHHhhhhcCCCCCCCCCcccccccc
Q 037085          177 VFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQT  209 (248)
Q Consensus       177 ~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~  209 (248)
                      ++.+++++|+++|++++.+..++.+ |++.+..
T Consensus       341 g~~~iv~~Ll~~GAd~n~~d~~G~t-~L~~A~~  372 (408)
T d1n11a_         341 GHTDIVTLLLKNGASPNEVSSDGTT-PLAIAKR  372 (408)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCSSSCC-HHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHH
Confidence            7899999999999999987776666 7766543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-27  Score=189.59  Aligned_cols=171  Identities=22%  Similarity=0.277  Sum_probs=127.6

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhh------------------
Q 037085           16 GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESL------------------   77 (248)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~------------------   77 (248)
                      +.|+||+|++.|+.++|++|+++|+++....+..|.||||+|+..|+.+++++|++.+....                  
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            45677777777777777777777777643444567777777777777777777765421100                  


Q ss_pred             ---------------------------------------------------------hhhccCCCcHHHHHHHcCChHHH
Q 037085           78 ---------------------------------------------------------EKLTSNGETALHLAVKKSRSDAF  100 (248)
Q Consensus        78 ---------------------------------------------------------~~~~~~g~t~lh~a~~~~~~~~~  100 (248)
                                                                               ...+..|.||||+|+..++.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  164 (285)
T d1wdya_          85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             ccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHH
Confidence                                                                     01123478888888888888888


Q ss_pred             HHHHHH-Hhccc-------------------------------cccccccccCCCCcHhHHHHhCCcHHHHHHHHhh-cc
Q 037085          101 QALVDE-AKSHR-------------------------------KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRE-NS  147 (248)
Q Consensus       101 ~~Ll~~-~~~~~-------------------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~  147 (248)
                      ++|+++ |++..                               ....++.++..|.||||+|+..|+.+++++|++. |+
T Consensus       165 ~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~  244 (285)
T d1wdya_         165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI  244 (285)
T ss_dssp             HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC
T ss_pred             HHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCC
Confidence            888764 22211                               1223567889999999999999999999999985 54


Q ss_pred             cccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCC
Q 037085          148 NRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQL  196 (248)
Q Consensus       148 ~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~  196 (248)
                            +++.+|.+|+||||+|++.    ++.+++++|+++||+++..+
T Consensus       245 ------din~~d~~G~TpL~~A~~~----~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         245 ------EINDTDSDGKTALLLAVEL----KLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             ------CTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHSSCSCCSS
T ss_pred             ------CCcCCCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCCCccc
Confidence                  8999999999999999998    78999999999999988754

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-26  Score=175.36  Aligned_cols=182  Identities=24%  Similarity=0.283  Sum_probs=152.6

Q ss_pred             cCCCCHHHHHHhCCCHHHHHHHHh----cCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHH
Q 037085           14 QRGETTMHLLSTDGDARMVRIFGE----NNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALH   89 (248)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh   89 (248)
                      .+|+||||+||.+|+.++++.|++    .+.++ +.+|..|.||||+|+..|+.+++++|++.+ ...+..+..+.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhccccccccccccccc-ccccccccccccccc
Confidence            379999999999999999999875    56666 788999999999999999999999999984 457777888999999


Q ss_pred             HHHHcCChHHHHHHHHHHhccc--------------------------------cccccccccCCCCcHhHHHHhCCcHH
Q 037085           90 LAVKKSRSDAFQALVDEAKSHR--------------------------------KEHLFTWKDKEGNTVLHLATLNKLKQ  137 (248)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~--------------------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~  137 (248)
                      .|....+.++++.+........                                ...........+.++|+.|+..+...
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            9999988888777765422111                                11123345668899999999999999


Q ss_pred             HHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          138 IVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       138 ~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      +++.+++.|.      +.+.+|..|.|||++|+..    ++.+++++|+++|++++.+..++.+ |++.+.
T Consensus       159 ~~~~~~~~~~------~~~~~d~~g~t~L~~A~~~----g~~~~v~~Ll~~Gad~n~~d~~G~T-pL~~A~  218 (228)
T d1k1aa_         159 MVQLLLQHGA------NVNAQMYSGSSALHSASGR----GLLPLVRTLVRSGADSSLKNCHNDT-PLMVAR  218 (228)
T ss_dssp             HHHHHHHTTC------CTTCBCTTSCBHHHHHHHH----TCHHHHHHHHHTTCCTTCCCTTSCC-TTTTCS
T ss_pred             hhhhhhhhcc------ccccccccCcchHHHHHHc----CCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHH
Confidence            9999999987      7888999999999999988    7889999999999999987766655 888765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.2e-28  Score=193.17  Aligned_cols=151  Identities=21%  Similarity=0.201  Sum_probs=119.2

Q ss_pred             ccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCH---HHHHHHHHhCchhhhhhccCCCcHHH
Q 037085           13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDS---DVIRALVSICPESLEKLTSNGETALH   89 (248)
Q Consensus        13 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~---~~~~~Ll~~~~~~~~~~~~~g~t~lh   89 (248)
                      |.+|+||||+||..|+.++|++|+++|+++ +.+|..|+||||.||..++.   ..+..+++........+|..|+||||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  182 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHH
Confidence            789999999999999999999999999998 78999999999999987752   22333333323446677899999999


Q ss_pred             HHHHcCC----hHHH--------HHHHHHHhccc-------------------------------cccccccccCCCCcH
Q 037085           90 LAVKKSR----SDAF--------QALVDEAKSHR-------------------------------KEHLFTWKDKEGNTV  126 (248)
Q Consensus        90 ~a~~~~~----~~~~--------~~Ll~~~~~~~-------------------------------~~~~~~~~~~~g~t~  126 (248)
                      +++..+.    ..++        .+++..+....                               ....+|.+|.+|+||
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~Tp  262 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  262 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCH
Confidence            9876543    2222        23333322211                               122368899999999


Q ss_pred             hHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHH
Q 037085          127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCN  170 (248)
Q Consensus       127 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~  170 (248)
                      ||+|++.|+.++|++|+++|+      |++.+|+.|.|||++|+
T Consensus       263 Lh~A~~~g~~~iv~~Ll~~GA------d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         263 LNIAARLGNISIVDALLDYGA------DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHCCHHHHHHHHHTTC------CTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHcC
Confidence            999999999999999999998      89999999999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=2.6e-27  Score=188.16  Aligned_cols=162  Identities=28%  Similarity=0.349  Sum_probs=140.4

Q ss_pred             HhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhh-----------
Q 037085            9 ASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESL-----------   77 (248)
Q Consensus         9 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~-----------   77 (248)
                      ++..|.+|.||||+|+..|+.+++++|++++.+. ...+..+.+||+.++..++.++++.|++.+....           
T Consensus        66 vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  144 (291)
T d1s70b_          66 INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD  144 (291)
T ss_dssp             TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccccccchhhcccccCcccccccccCccccc
Confidence            5678999999999999999999999999999887 6778889999999999999999999987632100           


Q ss_pred             ------------------------------------------------hhhccCCCcHHHHHHHcCChHHHHHHHHHHhc
Q 037085           78 ------------------------------------------------EKLTSNGETALHLAVKKSRSDAFQALVDEAKS  109 (248)
Q Consensus        78 ------------------------------------------------~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~  109 (248)
                                                                      ...+..|.||||+|+..|+.++++.|++.|++
T Consensus       145 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d  224 (291)
T d1s70b_         145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD  224 (291)
T ss_dssp             HCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             cccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceec
Confidence                                                            11245688999999999999999999999988


Q ss_pred             cccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhh
Q 037085          110 HRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAV  189 (248)
Q Consensus       110 ~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g  189 (248)
                            ++.++..|+||||+|+..|+.++|++|+++|+      |++.+|..|+||||+|++        +++++|.+..
T Consensus       225 ------in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga------dv~~~d~~G~TaL~~A~e--------~~~~~L~~~~  284 (291)
T d1s70b_         225 ------VNIKDYDGWTPLHAAAHWGKEEACRILVENLC------DMEAVNKVGQTAFDVADE--------DILGYLEELQ  284 (291)
T ss_dssp             ------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCTTTSCCS--------GGGHHHHHHH
T ss_pred             ------ccccccCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHHHH--------HHHHHHHHHh
Confidence                  88999999999999999999999999999998      899999999999999953        4566666554


Q ss_pred             hh
Q 037085          190 AQ  191 (248)
Q Consensus       190 ~~  191 (248)
                      ..
T Consensus       285 ~~  286 (291)
T d1s70b_         285 KK  286 (291)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-26  Score=190.43  Aligned_cols=161  Identities=24%  Similarity=0.304  Sum_probs=146.8

Q ss_pred             hhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHH
Q 037085           10 SIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALH   89 (248)
Q Consensus        10 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh   89 (248)
                      ...+..|.||||+|+..++.++++.+++..... +..+..|.|||+.|+..++.+++++|++.+ .+++..+..+.||||
T Consensus       225 ~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g-~~~~~~~~~~~t~L~  302 (408)
T d1n11a_         225 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPLH  302 (408)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCCHHH
T ss_pred             cccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCC-Cccccccccccccch
Confidence            345677899999999999999999999988877 678899999999999999999999999984 457788889999999


Q ss_pred             HHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHH
Q 037085           90 LAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC  169 (248)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a  169 (248)
                      .++..++.++++++++.|++      ++.+|.+|+||||+|++.|+.++|++|+++|+      |++.+|..|+||||+|
T Consensus       303 ~~~~~~~~~~~~~ll~~g~~------in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GA------d~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         303 VASHYGNIKLVKFLLQHQAD------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA------SPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             HHHHSSCSHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CSCCCCSSSCCHHHHH
T ss_pred             hhcccCcceeeeeecccccc------ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHH
Confidence            99999999999999999988      89999999999999999999999999999998      8999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHHh
Q 037085          170 NANSQDSVFKEIGWIIQRA  188 (248)
Q Consensus       170 ~~~~~~~~~~~i~~~L~~~  188 (248)
                      +..    ++.+++++|..-
T Consensus       371 ~~~----~~~~iv~~L~~~  385 (408)
T d1n11a_         371 KRL----GYISVTDVLKVV  385 (408)
T ss_dssp             HHT----TCHHHHHHHHHH
T ss_pred             HHc----CCHHHHHHHHHH
Confidence            998    677888877543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.9e-25  Score=170.24  Aligned_cols=179  Identities=17%  Similarity=0.133  Sum_probs=152.5

Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchh--hhhhccCCCcHHHHHHHc
Q 037085           17 ETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPES--LEKLTSNGETALHLAVKK   94 (248)
Q Consensus        17 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~--~~~~~~~g~t~lh~a~~~   94 (248)
                      .+|||+||.+|+.++++.|++.++...+.+|.+|.||||+|+..|+.+++++|++.+.+.  .+..+..|.+|+|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            489999999999999999999887777899999999999999999999999999985432  345677899999999999


Q ss_pred             CChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCC
Q 037085           95 SRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQ  174 (248)
Q Consensus        95 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~  174 (248)
                      +..++++.++..+....    ....+..+.|+++.++..++.++++.|++.|.      +.+..+..|+||||+|+..  
T Consensus        81 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~------~~~~~~~~g~t~l~~a~~~--  148 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPD----LNKITNQGVTCLHLAVGKKWFEVSQFLIENGA------SVRIKDKFNQIPLHRAASV--  148 (229)
T ss_dssp             TCHHHHHHHHSSSSCCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHHHHH--
T ss_pred             ccccccccccccccccc----ccccccccccccccccccchhhhhhhhhhhcc------cccccCCCCCCccchhhhc--
Confidence            99999999887765522    55677889999999999999999999999987      6788899999999999988  


Q ss_pred             CchHHHHHHHHHHhhh-hcCCCCCCCCCccccccccC
Q 037085          175 DSVFKEIGWIIQRAVA-QQSPQLPDAGSANVSWNQTR  210 (248)
Q Consensus       175 ~~~~~~i~~~L~~~g~-~~~~~~~~~~~~~~~~~~~~  210 (248)
                        +..+++++|++.|. +++.+..++ .+|++.+...
T Consensus       149 --~~~~~~~~Ll~~~~~~in~~d~~g-~TpLh~A~~~  182 (229)
T d1ixva_         149 --GSLKLIELLCGLGKSAVNWQDKQG-WTPLFHALAE  182 (229)
T ss_dssp             --TCHHHHHHHHTTTCCCSCCCCTTS-CCHHHHHHHT
T ss_pred             --cccccccccccccccccccccccc-CCchhhhccc
Confidence              67899999999874 555555544 4488877643

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-26  Score=160.53  Aligned_cols=121  Identities=14%  Similarity=0.084  Sum_probs=110.4

Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCC-cHHHHHHH
Q 037085           15 RGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGE-TALHLAVK   93 (248)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~-t~lh~a~~   93 (248)
                      .+.++||+|+..|+.+++++|+++|.++ +.++..|.||||+|+ .|+.+++++|++++. +++.++..+. ||||+|+.
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga-~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGA-EPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC-CCCCCCTTTCCCHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccccc-ccccccccccccccccccc
Confidence            4678999999999999999999999988 789999999999775 799999999999854 4777777765 69999999


Q ss_pred             cCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHh
Q 037085           94 KSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (248)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (248)
                      .|+.+++++|+++|++      ++.+|..|+||||+|+..|+.+++++|+.
T Consensus        79 ~g~~~~v~~Ll~~ga~------~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGAR------LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCC------SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccc------cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999988      89999999999999999999999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-25  Score=157.30  Aligned_cols=125  Identities=21%  Similarity=0.264  Sum_probs=101.2

Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHH
Q 037085           52 IPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLAT  131 (248)
Q Consensus        52 t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~  131 (248)
                      ++|+.|+..|+.+++++|++++ .+++.+|.+|+||||+|+..++.+++++|++.|++      ++.+|.+|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g-~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~------~~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT-SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC------TTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC-CCccccccccccccccccccccccccccccccccc------cccccccCcccccccc
Confidence            5788888888888888888874 45788888888888888888888888888888877      7888888999999999


Q ss_pred             hCCcHHHHHHHHhhcccccccccccccCC-CCCCHHHHHHHcCCCchHHHHHHHHHHhhhh
Q 037085          132 LNKLKQIVELLIRENSNRRIMIRINTVNK-QGQTALQLCNANSQDSVFKEIGWIIQRAVAQ  191 (248)
Q Consensus       132 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~-~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~  191 (248)
                      ..|+.+++++|+++|+      +++..+. .|+||++++...  ..++.+++++|+..+.+
T Consensus        76 ~~g~~~~v~~Ll~~ga------~v~~~~~~~~~~~~~~~~a~--~~g~~eiv~~L~~~~~~  128 (130)
T d1ycsb1          76 SCNNVQVCKFLVESGA------AVFAMTYSDMQTAADKCEEM--EEGYTQCSQFLYGVQEK  128 (130)
T ss_dssp             HTTCHHHHHHHHHTTC------CTTCCCSSSCCCHHHHCCSS--STTCCCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHcCC------CcccccCCCCCCHHHHHHHH--HcChHHHHHHHHhHHHh
Confidence            9999999999998887      6776664 578888776433  33667888888877654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=2.3e-26  Score=158.60  Aligned_cols=106  Identities=22%  Similarity=0.228  Sum_probs=89.7

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHH
Q 037085           51 MIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLA  130 (248)
Q Consensus        51 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A  130 (248)
                      .|||++|++.|+.+++++|++.+ .+++.++..|.||||+|+..++.+++++|+++|++      ++.+|..|+||||+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g-~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d------in~~d~~g~tpLh~A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD------INAPDKHHITPLLSA   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTT-CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT------TTCCSSSCSCHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhh-hccccccccccccccccccccccccccccccccce------eeecccccccchhhh
Confidence            37888888888888888888874 45777888888888888888888888888888877      788888888888888


Q ss_pred             HhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHH
Q 037085          131 TLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC  169 (248)
Q Consensus       131 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a  169 (248)
                      +..|+.+++++|+++|+      |++.+|..|+||||+|
T Consensus        76 ~~~~~~~~v~~Ll~~Ga------d~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          76 VYEGHVSCVKLLLSKGA------DKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HTTTCCHHHHHHHTTCC------CSSSSSSSTCCCCCTC
T ss_pred             hhcCchhhhhhhhcccc------cceeeCCCCCCHHHHH
Confidence            88888888888888887      7888888888888877

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=156.88  Aligned_cols=120  Identities=15%  Similarity=0.171  Sum_probs=109.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCC-cHhH
Q 037085           50 LMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGN-TVLH  128 (248)
Q Consensus        50 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~-t~Lh  128 (248)
                      +.++||+|+..|+.+++++|++++ .+++.++..|.||+|+|+ .|+.+++++|+++|++      ++.++..+. ||||
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~g-ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~------~~~~~~~~~~~~L~   74 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE------PNCADPATLTRPVH   74 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC------CCCCCTTTCCCHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcC-Cccccccccccccccccc-cccccccccccccccc------cccccccccccccc
Confidence            568999999999999999999985 568899999999999775 7999999999999988      788888776 6999


Q ss_pred             HHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHH
Q 037085          129 LATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR  187 (248)
Q Consensus       129 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~  187 (248)
                      +|++.|+.+++++|+++|+      +++.+|..|+||||+|+..    ++.+++++|++
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga------~~~~~d~~G~T~l~~A~~~----g~~~~v~~Lls  123 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGA------RLDVRDAWGRLPVDLAEEL----GHRDVARYLRA  123 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTC------CSSCCCTTCCCHHHHHHHH----TCHHHHHHHSS
T ss_pred             ccccccccccccccccccc------ccccccCCCCCHHHHHHHc----CCHHHHHHHHh
Confidence            9999999999999999997      8999999999999999988    78999999874

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=1.2e-26  Score=182.79  Aligned_cols=180  Identities=14%  Similarity=0.118  Sum_probs=138.4

Q ss_pred             CCHHHHHHhC-CCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhC-------chhhhhhccCCCcHH
Q 037085           17 ETTMHLLSTD-GDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSIC-------PESLEKLTSNGETAL   88 (248)
Q Consensus        17 ~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~-------~~~~~~~~~~g~t~l   88 (248)
                      +||||+++.. |+.++++.|.+.+.+..  ....|.||||+||..|+.+++++|+...       +.+++.+|.+|+|||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~--~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTC--CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcC--CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            5899977655 67777777777665542  2346999999999999999998886431       346788999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccc--------------------
Q 037085           89 HLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN--------------------  148 (248)
Q Consensus        89 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~--------------------  148 (248)
                      |+|+..|+.+++++|+++|++      ++.+|.+|.|||++|+..++.++++.+...+..                    
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad------~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGAD------PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH  152 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC------SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccccccccc------cccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHh
Confidence            999999999999999999988      666777777777777766666555555433210                    


Q ss_pred             -------------------------------------------------------ccccccccccCCCCCCHHHHHHHcC
Q 037085          149 -------------------------------------------------------RRIMIRINTVNKQGQTALQLCNANS  173 (248)
Q Consensus       149 -------------------------------------------------------~~~~~~~~~~~~~g~tpl~~a~~~~  173 (248)
                                                                             ...+.+.+.+|..|.||||+|+.. 
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~-  231 (277)
T d2fo1e1         153 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE-  231 (277)
T ss_dssp             SCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH-
T ss_pred             cccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHc-
Confidence                                                                   002346778899999999999988 


Q ss_pred             CCchHHHHHHHHHHhhhhcCCCCCCCCCcccccccc
Q 037085          174 QDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQT  209 (248)
Q Consensus       174 ~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~  209 (248)
                         +..+++++|+++|++++.++..+.+ +++.+..
T Consensus       232 ---g~~~iv~~Ll~~gadin~~d~~G~T-~L~~A~~  263 (277)
T d2fo1e1         232 ---GRIEVVMYLIQQGASVEAVDATDHT-ARQLAQA  263 (277)
T ss_dssp             ---TCHHHHHHHHHTTCCSSCCCSSSCC-HHHHHHH
T ss_pred             ---CCHHHHHHHHHCcCCCCCcCCCCCC-HHHHHHH
Confidence               7889999999999999988776654 7776553

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=7.3e-27  Score=161.18  Aligned_cols=107  Identities=19%  Similarity=0.186  Sum_probs=101.0

Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCC
Q 037085           17 ETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSR   96 (248)
Q Consensus        17 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~   96 (248)
                      .|||++|++.|+.++++.|++++.++ +.++..|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g-~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSS-CTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccccccccccc-ceeeecccccccchhhhhhcCc
Confidence            47999999999999999999999998 788999999999999999999999999985 5688999999999999999999


Q ss_pred             hHHHHHHHHHHhccccccccccccCCCCcHhHHHH
Q 037085           97 SDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLAT  131 (248)
Q Consensus        97 ~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~  131 (248)
                      .+++++|+++|++      ++.+|.+|.||||+|.
T Consensus        81 ~~~v~~Ll~~Gad------~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKGAD------KTVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTCCC------SSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhccccc------ceeeCCCCCCHHHHHh
Confidence            9999999999988      8999999999999984

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.2e-25  Score=160.41  Aligned_cols=134  Identities=21%  Similarity=0.235  Sum_probs=121.0

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT   81 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   81 (248)
                      |+.++..++..|..|.||||+|+ .|+.+++++|++++.++ +..+..|.+|++.++..++.++++.+++.+ .+++.+|
T Consensus        22 L~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~n~~~   98 (156)
T d1bd8a_          22 LHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPD   98 (156)
T ss_dssp             HHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCC
T ss_pred             HHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccccccccccccc-ccccccc
Confidence            44556677888999999999987 58899999999999988 778889999999999999999999999985 4578889


Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhh
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRE  145 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  145 (248)
                      ..|.||||+|+..|+.+++++|+ .+++      ++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        99 ~~~~t~L~~A~~~~~~~i~~~L~-~~~~------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          99 GTGALPIHLAVQEGHTAVVSFLA-AESD------LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHH-TTSC------TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCeeecccccccccccccccc-cccc------ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999999887 5666      888999999999999999999999999875

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.3e-25  Score=166.21  Aligned_cols=159  Identities=19%  Similarity=0.193  Sum_probs=136.1

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCc-------------
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICP-------------   74 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~-------------   74 (248)
                      .++.+|.+|+||||+|+..|+.+++++|++.++.. +.....|.++++.|...++.++++.+.....             
T Consensus        32 ~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (228)
T d1k1aa_          32 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG  110 (228)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTS
T ss_pred             CCCccCCCCCccceehhcccccccccccccccccc-cccccccccccccccccccccchhhhhhcccccccccccccccc
Confidence            35678899999999999999999999999999887 6778888899999988888888777765411             


Q ss_pred             ------------------------hhhhhhccCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHH
Q 037085           75 ------------------------ESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLA  130 (248)
Q Consensus        75 ------------------------~~~~~~~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A  130 (248)
                                              .........+.++++.|+..+...+++.+++.+..      .+.+|..|.||||+|
T Consensus       111 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~------~~~~d~~g~t~L~~A  184 (228)
T d1k1aa_         111 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN------VNAQMYSGSSALHSA  184 (228)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCBCTTSCBHHHHH
T ss_pred             ccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc------cccccccCcchHHHH
Confidence                                    11112344688999999999999999999998877      888999999999999


Q ss_pred             HhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHH
Q 037085          131 TLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGW  183 (248)
Q Consensus       131 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~  183 (248)
                      +..|+.+++++|+++|+      |++.+|.+|+||||+|+.+    ++.+|++
T Consensus       185 ~~~g~~~~v~~Ll~~Ga------d~n~~d~~G~TpL~~A~~~----~~~divk  227 (228)
T d1k1aa_         185 SGRGLLPLVRTLVRSGA------DSSLKNCHNDTPLMVARSR----RVIDILR  227 (228)
T ss_dssp             HHHTCHHHHHHHHHTTC------CTTCCCTTSCCTTTTCSSH----HHHHHHT
T ss_pred             HHcCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHhC----CCccccC
Confidence            99999999999999998      8999999999999999866    6777764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-24  Score=169.52  Aligned_cols=153  Identities=18%  Similarity=0.145  Sum_probs=115.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhhh-ccCCCcHHHHHHHcCChHHHHHHHHHHhccc-----------------
Q 037085           50 LMIPLHRAALEGDSDVIRALVSICPESLEKL-TSNGETALHLAVKKSRSDAFQALVDEAKSHR-----------------  111 (248)
Q Consensus        50 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~-~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~-----------------  111 (248)
                      +.|+||.|++.|+.+++++|++++.+ ++.+ +..|.||||+|+..|+.+++++|++.+....                 
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~d-in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            46899999999999999999999654 5544 4579999999999999999999998765442                 


Q ss_pred             -----------------------------------------------------cccccccccCCCCcHhHHHHhCCcHHH
Q 037085          112 -----------------------------------------------------KEHLFTWKDKEGNTVLHLATLNKLKQI  138 (248)
Q Consensus       112 -----------------------------------------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~  138 (248)
                                                                           ........+..|.||||+|+..|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                 223345677889999999999999999


Q ss_pred             HHHHHhh-cccc-------------------------------cccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHH
Q 037085          139 VELLIRE-NSNR-------------------------------RIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQ  186 (248)
Q Consensus       139 v~~Ll~~-g~~~-------------------------------~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~  186 (248)
                      +++|+++ |++.                               ..+.+++.++..|.||||+|+..    ++.+++++|+
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~----~~~~~v~~lL  239 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK----KHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT----TCHHHHHHHH
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhc----CcHHHHHHHH
Confidence            9999865 3321                               12345666777788888888776    5677787777


Q ss_pred             H-hhhhcCCCCCCCCCccccccc
Q 037085          187 R-AVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       187 ~-~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      + .|++++....++.+ |++.+.
T Consensus       240 ~~~g~din~~d~~G~T-pL~~A~  261 (285)
T d1wdya_         240 EQEHIEINDTDSDGKT-ALLLAV  261 (285)
T ss_dssp             HSSSCCTTCCCTTSCC-HHHHHH
T ss_pred             HcCCCCCcCCCCCCCC-HHHHHH
Confidence            6 47777766655544 666554

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=2.2e-24  Score=162.99  Aligned_cols=164  Identities=19%  Similarity=0.181  Sum_probs=137.8

Q ss_pred             HHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCChH----------
Q 037085           29 ARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSD----------   98 (248)
Q Consensus        29 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~----------   98 (248)
                      .++|++|+++|+++....|.+|.||||+||..|+.+++++|++.+ ..++.++..+.++++.++..++..          
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g-~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAG-ADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhc-cccccccccccccccccccccccccccccccccc
Confidence            589999999999984457999999999999999999999999984 447777888888888877665544          


Q ss_pred             ------------------------HHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccccccccc
Q 037085           99 ------------------------AFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIR  154 (248)
Q Consensus        99 ------------------------~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~  154 (248)
                                              ..+.|...+.+      ++.++..|.|||++++..+..++++.+++++.      +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~------~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~------~  148 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADAD------INAADNSGKTALHWAAAVNNTEAVNILLMHHA------N  148 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC------C
T ss_pred             cccccccccccccccccccccchhhhhhhhhhccc------ccccCCCCCCcchhhcccCcceeeeeeccccc------c
Confidence                                    34444444444      77889999999999999999999999999987      7


Q ss_pred             ccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccccC
Q 037085          155 INTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQTR  210 (248)
Q Consensus       155 ~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~  210 (248)
                      ++..|..|.||||+|+..    ++.+++++|+++|++++.....+.+ |++.+...
T Consensus       149 ~~~~d~~g~TpL~~A~~~----g~~~~v~~Ll~~gad~n~~d~~g~T-pl~~A~~~  199 (209)
T d1ot8a_         149 RDAQDDKDETPLFLAARE----GSYEASKALLDNFANREITDHMDRL-PRDVASER  199 (209)
T ss_dssp             TTCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHT
T ss_pred             ccccccccccccchhccc----cHHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHHc
Confidence            899999999999999988    7899999999999999887766554 77766544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=2e-26  Score=187.64  Aligned_cols=178  Identities=12%  Similarity=0.061  Sum_probs=108.2

Q ss_pred             CchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhh--cCCCCcHHHHHHHhCCHHHHHHHHHhCchh--hhhh
Q 037085            5 WPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEV--DNSLMIPLHRAALEGDSDVIRALVSICPES--LEKL   80 (248)
Q Consensus         5 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~--~~~~   80 (248)
                      .+..++..|.+|.||||+||..|+.++|++|++.++++ +..  +.+|.||||+|+..|+.+++++|++.++..  .+..
T Consensus       115 ~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~  193 (346)
T d2ajaa1         115 SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ  193 (346)
T ss_dssp             CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHH
T ss_pred             CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccc
Confidence            33445556666777777777777777777777777665 332  234677777777777777777777765432  2333


Q ss_pred             ccCCCcHHHHHHHcCChHHHHHHHHHHhccccc---------------------------cccccccC------------
Q 037085           81 TSNGETALHLAVKKSRSDAFQALVDEAKSHRKE---------------------------HLFTWKDK------------  121 (248)
Q Consensus        81 ~~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~---------------------------~~~~~~~~------------  121 (248)
                      +.++.||+|.|+.+|+.+++++|++.|++....                           ..+.....            
T Consensus       194 ~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~  273 (346)
T d2ajaa1         194 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC  273 (346)
T ss_dssp             HHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHH
T ss_pred             cCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccc
Confidence            445566666666777777777777665442200                           00000000            


Q ss_pred             ----CCCcHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHh
Q 037085          122 ----EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRA  188 (248)
Q Consensus       122 ----~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~  188 (248)
                          .+.++++.++..+..+++++|++.+.... ..+.+..+.+|+||||+|++.    ++.+++++|++.
T Consensus       274 ~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~-~~~~~~~~~~g~T~LhlA~~~----Gn~e~v~lLL~~  339 (346)
T d2ajaa1         274 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA-LAPTATIPGDANELLRLALRL----GNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGG-GSSCCSSTTCCCHHHHHHHHH----TCTTHHHHHTTS
T ss_pred             cccchhhhHHHHHhcCChHHHHHHHHhCcChhh-hcccccCCCCCCcHHHHHHHc----CcHHHHHHHhCC
Confidence                12245666666667777777777665211 112344556799999999998    788999999864

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.5e-25  Score=153.85  Aligned_cols=121  Identities=17%  Similarity=0.161  Sum_probs=108.8

Q ss_pred             CHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCCh
Q 037085           18 TTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS   97 (248)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~~   97 (248)
                      ++|+.|+..|+.++++.|++++.++ +.+|.+|.||||+|+..|+.+++++|++.+ .+.+.+|.+|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g-~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccc-cccccccccCcccccccchhhHH
Confidence            5799999999999999999999998 789999999999999999999999999984 56889999999999999999999


Q ss_pred             HHHHHHHHHHhcccccccccccc-CCCCcHhHHH--HhCCcHHHHHHHHhhc
Q 037085           98 DAFQALVDEAKSHRKEHLFTWKD-KEGNTVLHLA--TLNKLKQIVELLIREN  146 (248)
Q Consensus        98 ~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~v~~Ll~~g  146 (248)
                      +++++|+++|++      ++..+ ..++||++++  +..|+.+++++|+..+
T Consensus        81 ~~v~~Ll~~ga~------v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVESGAA------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHTTCC------TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCC------cccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999988      66665 4588887665  5678899999998764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.4e-24  Score=153.24  Aligned_cols=136  Identities=21%  Similarity=0.256  Sum_probs=122.5

Q ss_pred             cccCchhHhhhccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc
Q 037085            2 ARLWPQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT   81 (248)
Q Consensus         2 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   81 (248)
                      ++... .++.+|.+|.||||+|+ .|+.+++++|++.++++ +.++..|.++++.++..++.+.++.|++.+ ...+..+
T Consensus        21 l~~g~-d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~   96 (156)
T d1ihba_          21 LQNNV-NVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIED   96 (156)
T ss_dssp             TTSCC-CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HHCCC-CcCccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccccccccccccc-ccccccc
Confidence            34433 46788999999999886 78999999999999998 788999999999999999999999999984 4578889


Q ss_pred             cCCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhc
Q 037085           82 SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN  146 (248)
Q Consensus        82 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g  146 (248)
                      ..|.+|+|+|+..++.+++++|+++++..     .+.+|.+|+||||+|+..++.+++++|+++|
T Consensus        97 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          97 NEGNLPLHLAAKEGHLRVVEFLVKHTASN-----VGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccc-----ccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999999997631     7889999999999999999999999999986

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.2e-23  Score=148.37  Aligned_cols=123  Identities=21%  Similarity=0.194  Sum_probs=109.6

Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcchhh-----hhcCCCCcHHHHHHHh---CCHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 037085           19 TMHLLSTDGDARMVRIFGENNRELCL-----EVDNSLMIPLHRAALE---GDSDVIRALVSICPESLEKLTSNGETALHL   90 (248)
Q Consensus        19 ~L~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~   90 (248)
                      .|+.|++.+++..+..++..+.+...     ..+..|.||||+|+..   ++.+++++|++.+ .+++.+|..|.||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-adin~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC-CChhhhhhhhcccccc
Confidence            56788999999999999988876521     2367899999999985   6789999999985 4589999999999999


Q ss_pred             HHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhccc
Q 037085           91 AVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN  148 (248)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  148 (248)
                      |+..|+.+++++|+++|++      ++.+|..|.||||+|++.|+.+++++|++.++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad------~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKAS------IEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCcc------ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999988      889999999999999999999999999998764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7.4e-23  Score=147.08  Aligned_cols=126  Identities=21%  Similarity=0.250  Sum_probs=109.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCchhh-----hhhccCCCcHHHHHHHc---CChHHHHHHHHHHhccccccccccccCCCC
Q 037085           53 PLHRAALEGDSDVIRALVSICPESL-----EKLTSNGETALHLAVKK---SRSDAFQALVDEAKSHRKEHLFTWKDKEGN  124 (248)
Q Consensus        53 ~L~~A~~~g~~~~~~~Ll~~~~~~~-----~~~~~~g~t~lh~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~  124 (248)
                      .|+.|++.++...+..++..+.+..     ...+..|+||||+|+..   ++.+++++|+++|++      ++.+|..|+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad------in~~d~~g~   82 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN------LDKQTGKGS   82 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC------TTCCCTTCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC------hhhhhhhhc
Confidence            4567889999999999988754321     22367799999999975   568999999999988      899999999


Q ss_pred             cHhHHHHhCCcHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCC
Q 037085          125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSP  194 (248)
Q Consensus       125 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~  194 (248)
                      ||||+|+..|+.+++++|+++|+      +++.+|..|+||||+|+..    ++.+++++|++.++....
T Consensus        83 TpLh~A~~~~~~~~v~~Ll~~ga------d~~~~d~~g~tpL~~A~~~----~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          83 TALHYCCLTDNAECLKLLLRGKA------SIEIANESGETPLDIAKRL----KHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHTTCCC
T ss_pred             cccccccccccccccccccccCc------cccccCCCCCCHHHHHHHc----CCHHHHHHHHHhCCCCCC
Confidence            99999999999999999999998      8999999999999999988    789999999998876543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=9.1e-23  Score=162.82  Aligned_cols=157  Identities=20%  Similarity=0.185  Sum_probs=116.6

Q ss_pred             chhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCC---hHHHHHHHHHHhccccccccc
Q 037085           41 ELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSR---SDAFQALVDEAKSHRKEHLFT  117 (248)
Q Consensus        41 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~  117 (248)
                      ++....|.+|.||||+||..|+.+++++|++.+ .+++.+|..|+||||.|+..++   .+.++.+++....     .+.
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~-----~~~  171 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP-----CLI  171 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG-----GGG
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh-----hhh
Confidence            442234889999999999999999999999985 5688999999999999998765   2233344443222     166


Q ss_pred             cccCCCCcHhHHHHhCCc----HH--------HHHHHHhhccccc-------------------------------cccc
Q 037085          118 WKDKEGNTVLHLATLNKL----KQ--------IVELLIRENSNRR-------------------------------IMIR  154 (248)
Q Consensus       118 ~~~~~g~t~Lh~A~~~~~----~~--------~v~~Ll~~g~~~~-------------------------------~~~~  154 (248)
                      .+|..|+||||.++..+.    ..        ++..+++.+..+.                               ....
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            789999999998886432    22        3344444444210                               0012


Q ss_pred             ccccCCCCCCHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCCCCCCCccccccc
Q 037085          155 INTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVAQQSPQLPDAGSANVSWNQ  208 (248)
Q Consensus       155 ~~~~~~~g~tpl~~a~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~  208 (248)
                      +|.+|..|+||||+|+..    ++.+++++|+++|++++.+...+.+ |+.++.
T Consensus       252 in~~D~~G~TpLh~A~~~----g~~~iv~~Ll~~GAd~~~~n~~G~T-pl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARL----GNISIVDALLDYGADPFIANKSGLR-PVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHH----CCHHHHHHHHHTTCCTTCCCTTSCC-GGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCCCCCCCCCCC-HHHHcC
Confidence            688899999999999988    7899999999999999988876665 877653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.7e-22  Score=145.18  Aligned_cols=123  Identities=19%  Similarity=0.228  Sum_probs=114.2

Q ss_pred             hccCCCCHHHHHHhCCCHHHHHHHHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhccCCCcHHHHH
Q 037085           12 KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA   91 (248)
Q Consensus        12 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~lh~a   91 (248)
                      .|..|+||||+|+..++.++++.++...... ...+..+.++++.++...+.++++.++..+. ..+.++..|.||||+|
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~g~T~L~~A  107 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKHGA-DVNAKDMLKMTALHWA  107 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTSCCHHHHH
T ss_pred             cccCCCccccccccccccccccccccccccc-cccccccccccccccccccceeeecccccCC-ccccccccCchHHHhh
Confidence            5889999999999999999999999988877 5677788999999999999999999998854 5778899999999999


Q ss_pred             HHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHH
Q 037085           92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL  142 (248)
Q Consensus        92 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L  142 (248)
                      +..|+.+++++|+++|++      ++.+|.+|.||||+|+..|+.+++++|
T Consensus       108 ~~~g~~~iv~~ll~~gad------~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         108 TEHNHQEVVELLIKYGAD------VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhcchhheeeeccccccC------CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999999999999999998      889999999999999999999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=2.3e-24  Score=175.34  Aligned_cols=135  Identities=13%  Similarity=0.105  Sum_probs=111.4

Q ss_pred             hHhhhccCCCCHHHHHHhCCCHHHHHH---HHhcCcchhhhhcCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhhhc--c
Q 037085            8 LASIKNQRGETTMHLLSTDGDARMVRI---FGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLT--S   82 (248)
Q Consensus         8 ~~~~~~~~g~t~L~~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~--~   82 (248)
                      .+..++..|.|+||+|+.+|+.+++++   |++.++.+ +.++..|.||||+||+.|+.+++++|++.+++ ++..+  .
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~-~~~~~~~~  159 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPT-EIMAMIQA  159 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT-THHHHHSH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccccccc
Confidence            445778899999999999999887766   68888887 77899999999999999999999999998654 44443  5


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHHHHhccccccccccccCCCCcHhHHHHhCCcHHHHHHHHhhcc
Q 037085           83 NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (248)
Q Consensus        83 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  147 (248)
                      +|.||||+|+..|+.+++++|++.|+...   ..+..+.++.||+|.|+..|+.+++++|++.|+
T Consensus       160 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~---~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga  221 (346)
T d2ajaa1         160 ENYHAFRLAAENGHLHVLNRLCELAPTEA---TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  221 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCGGGH---HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             CCCChhHHHHHHhhHHHHHHHHHcCCccc---ccccccCCCcchhhHHhhcCHHHHHHHHHhCCC
Confidence            69999999999999999999999876521   134455677889999999999999999999998