Citrus Sinensis ID: 037086

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKPESIIFY
ccccccccEEEEEEcccccEEEEEccccccccccEEEcccccEEEHHHHHHHHcccccccccccEEEccccccccEEEcccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHccEEEccEEEEEEEEEEccccEEEccccccccccccccEEcccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHHcccccccEEEcccccccccccccccEEEEEEEcccccccccccccEEEEEEEEccccccEEEEEEEEcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccEEEc
ccHHHcccEEEEEcccccEEEEEEccccccHHccccccccccEEEHHHHHHHHcccEEEcccccccccccccccccccHHHHEcccHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHcccEEccccEEEEEEEcccccEEEccccccEEEcccccEEEccccEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccHcccccHHHHHHHHHHHHHHcccccccEEEEEEEccccccccEEEEEccEEEEEEEEEccccccccccHHHHHHEEEEEEEEEccccEEEcccccccccccccccEEEEEcccccccccccccccEEEEEEcccccccHHHHEEEEccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccEEEEc
VEEALKGIKVVLTHVEYNRSykitgissqpmsqlmfiddngtRMSVIQYFLEKSNialqftslpavlagsearpiylpmelsriVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRanaynddtlvnreFGIQVADVLTLVdarilpapmlkyhesgreasvnpgfgqwnMINKKMFNGGRVEVWTCVnfstdldpdvpfqfCQGLVDVcnskgmvfnprpvipisssnpnQIEKALVDVHNRTTQQGKQLQLLIIIlpddkgsygriKRVCETELgivsqccqpkqasKLSMQYFENVALKINVKVGGRNTVLVDAVqkriplvtdrptiifgadvthpqrgedsspSIAAVVAsmdwpevtkyRGLVSAQARHEEIIQDLYKsiqdpqrglvHGGMIRELLIAFNrstnrkpesiify
VEEALKGIKVVLTHVEYNRsykitgissqpmsQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTAllratcqrprereenirmmtranaynddtlvNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRNTVLVdavqkriplvtdrptiifgadvthpqrgedSSPSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLiafnrstnrkpesiify
VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTqqgkqlqlliiilPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKPESIIFY
*****KGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQ*********RMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPI*********KALVDVHNRTTQQGKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVT***********IAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFN*************
VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRY***************TCQRPREREENIRMMTR*****DDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKPESIIFY
VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTH********PSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKPESIIFY
VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKPESIIFY
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VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKPESIIFY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query426 2.2.26 [Sep-21-2011]
Q9SJK3 997 Protein argonaute 5 OS=Ar yes no 0.985 0.421 0.617 1e-157
Q851R2 1058 Protein argonaute MEL1 OS yes no 0.992 0.399 0.592 1e-147
Q7XSA2 1118 Protein argonaute 1B OS=O yes no 0.997 0.380 0.575 1e-143
O04379 1048 Protein argonaute 1 OS=Ar no no 0.997 0.405 0.576 1e-142
Q9XGW1 988 Protein argonaute 10 OS=A no no 0.997 0.430 0.568 1e-142
Q6EU14 1082 Protein argonaute 1A OS=O yes no 0.997 0.392 0.572 1e-141
Q7Y001 1049 Protein argonaute 12 OS=O no no 0.995 0.404 0.543 1e-139
Q6K972 1011 Protein argonaute 1C OS=O no no 0.990 0.417 0.579 1e-139
Q5Z5B2 1038 Protein argonaute 1D OS=O no no 0.997 0.409 0.563 1e-138
Q69VD5 979 Protein argonaute PNH1 OS no no 0.997 0.434 0.556 1e-134
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function desciption
 Score =  555 bits (1430), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/426 (61%), Positives = 328/426 (76%), Gaps = 6/426 (1%)

Query: 1   VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQF 60
           V++ L+ +KV L H    +S KI+GISS P+ +L F  ++ +  +V+QYF EK N  +++
Sbjct: 386 VKKVLRTLKVKLLHWNGTKSAKISGISSLPIRELRFTLEDKSEKTVVQYFAEKYNYRVKY 445

Query: 61  TSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMM 120
            +LPA+  GS+ RP+YLPMEL +I  GQRYTKR NE+QVTALL+ATCQRP +RE +I+ +
Sbjct: 446 QALPAIQTGSDTRPVYLPMELCQIDEGQRYTKRLNEKQVTALLKATCQRPPDRENSIKNL 505

Query: 121 TRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINK 180
              N YNDD  +++EFG+ V   L  ++AR+LP PMLKYH+SG+E  VNP  GQWNMI+K
Sbjct: 506 VVKNNYNDD--LSKEFGMSVTTQLASIEARVLPPPMLKYHDSGKEKMVNPRLGQWNMIDK 563

Query: 181 KMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIE 240
           KM NG +V  WTCV+FST +D  +P +FC+ L+ +C SKGM F P+P IP  S  P  IE
Sbjct: 564 KMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIE 623

Query: 241 KALVDVHNRTTQQGKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQ 300
           +AL+D+H R       LQLLI+ILPD  GSYG+IKR+CETELGIVSQCCQP+Q +KL+ Q
Sbjct: 624 EALLDIHKR----APGLQLLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQ 679

Query: 301 YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVV 360
           Y ENVALKINVK GGRNTVL DA+++ IPL+TDRPTII GADVTHPQ GEDSSPSIAAVV
Sbjct: 680 YMENVALKINVKTGGRNTVLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSIAAVV 739

Query: 361 ASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKP 420
           ASMDWPE+ KYRGLVSAQA  EEIIQDLYK +QDPQRGLVH G+IRE  IAF R+T + P
Sbjct: 740 ASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRATGQIP 799

Query: 421 ESIIFY 426
           + IIFY
Sbjct: 800 QRIIFY 805
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing.
Arabidopsis thaliana (taxid: 3702)
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function description
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 Back     alignment and function description
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
359479401 1038 PREDICTED: LOW QUALITY PROTEIN: protein 1.0 0.410 0.691 1e-178
297734872 1032 unnamed protein product [Vitis vinifera] 1.0 0.412 0.691 1e-178
255565533 987 eukaryotic translation initiation factor 1.0 0.431 0.703 1e-176
224106886 987 argonaute protein group [Populus trichoc 1.0 0.431 0.666 1e-175
224054242 904 argonaute protein group [Populus trichoc 1.0 0.471 0.680 1e-174
449520607 984 PREDICTED: LOW QUALITY PROTEIN: protein 0.997 0.431 0.657 1e-166
449443600 987 PREDICTED: protein argonaute 5-like [Cuc 0.997 0.430 0.655 1e-166
297826159 1001 hypothetical protein ARALYDRAFT_481718 [ 0.990 0.421 0.647 1e-161
4510428 997 Argonaute (AGO1)-like protein [Arabidops 0.985 0.421 0.617 1e-155
30683679 997 Argonaute family protein [Arabidopsis th 0.985 0.421 0.617 1e-155
>gi|359479401|ref|XP_002271699.2| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 300/434 (69%), Positives = 357/434 (82%), Gaps = 8/434 (1%)

Query: 1   VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMF-IDDNGTRMSVIQYFLEKSNIALQ 59
           V++ALKG+KV LTH E+ + YKI G+SSQP +QLMF +DD  TR+SV+QYF +K NI L+
Sbjct: 413 VKKALKGVKVQLTHREFAKRYKIAGVSSQPTNQLMFTLDDEATRVSVVQYFRQKYNIVLK 472

Query: 60  FTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRM 119
           + S P++ AGS+++PIYLPME+ +IV GQRYT++ N+RQVTALLRATCQRP ERE NI+ 
Sbjct: 473 YPSWPSLQAGSDSKPIYLPMEVCKIVEGQRYTRKLNDRQVTALLRATCQRPSEREGNIQE 532

Query: 120 MTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMIN 179
           M R N ++ D +V  EFGI++ + LTLVDAR+LP PMLKYH+SGREA V+P  GQWNMI+
Sbjct: 533 MVRKNNFSTDRVVRDEFGIRINEELTLVDARVLPPPMLKYHDSGREAKVDPRVGQWNMID 592

Query: 180 KKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQI 239
           KKM NGG V+ WTC+NFS  +  D+P  FC+ LV++C SKGMVFNP P++PI S++PNQI
Sbjct: 593 KKMVNGGTVQFWTCLNFSFRVHQDLPSGFCRELVNMCVSKGMVFNPNPLLPIQSAHPNQI 652

Query: 240 EKALVDVHNRTT-------QQGKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPK 292
           EK LVDVH ++        Q GKQLQLLIIILPD  GSYG+IKR+CETELGIVSQCCQP 
Sbjct: 653 EKVLVDVHKQSMAKLASMGQNGKQLQLLIIILPDVTGSYGKIKRICETELGIVSQCCQPS 712

Query: 293 QASKLSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDS 352
           QASKL+ QYFENVALKINVKVGGRNTVL DA+Q++IPLV+D PTIIFGADVTHPQ GEDS
Sbjct: 713 QASKLNKQYFENVALKINVKVGGRNTVLFDAIQRKIPLVSDLPTIIFGADVTHPQPGEDS 772

Query: 353 SPSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAF 412
           SPSIAAVVASMDWPEVTKYRGLVSAQ   EEIIQDLYK+  DP +G+ HGGMIRELLIAF
Sbjct: 773 SPSIAAVVASMDWPEVTKYRGLVSAQHHREEIIQDLYKTTADPHKGVTHGGMIRELLIAF 832

Query: 413 NRSTNRKPESIIFY 426
            RST  KP  IIFY
Sbjct: 833 RRSTGYKPSRIIFY 846

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734872|emb|CBI17106.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255565533|ref|XP_002523757.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223537061|gb|EEF38697.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224106886|ref|XP_002314317.1| argonaute protein group [Populus trichocarpa] gi|222850725|gb|EEE88272.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224054242|ref|XP_002298162.1| argonaute protein group [Populus trichocarpa] gi|222845420|gb|EEE82967.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449520607|ref|XP_004167325.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449443600|ref|XP_004139565.1| PREDICTED: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297826159|ref|XP_002880962.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] gi|297326801|gb|EFH57221.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|4510428|gb|AAD21514.1| Argonaute (AGO1)-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30683679|ref|NP_850110.1| Argonaute family protein [Arabidopsis thaliana] gi|322510009|sp|Q9SJK3.2|AGO5_ARATH RecName: Full=Protein argonaute 5 gi|330252961|gb|AEC08055.1| Argonaute family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
TAIR|locus:2057851 997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.985 0.421 0.600 5.8e-137
UNIPROTKB|Q851R2 1058 MEL1 "Protein argonaute MEL1" 0.992 0.399 0.571 2.5e-129
TAIR|locus:2170897 988 AGO10 "ARGONAUTE 10" [Arabidop 0.997 0.430 0.552 8.9e-125
UNIPROTKB|Q69VD5 979 PHN1 "Protein argonaute PNH1" 0.997 0.434 0.540 2.4e-122
UNIPROTKB|F1PGN2 794 EIF2C4 "Uncharacterized protei 0.957 0.513 0.349 1.2e-56
ZFIN|ZDB-GENE-060503-452 867 ago3b "argonaute RISC catalyti 0.934 0.459 0.350 1.7e-56
UNIPROTKB|F1LUQ5 860 Eif2c4 "Protein Eif2c4" [Rattu 0.957 0.474 0.351 2e-56
UNIPROTKB|Q9HCK5 861 EIF2C4 "Protein argonaute-4" [ 0.957 0.473 0.349 2.6e-56
UNIPROTKB|F1SV64 861 EIF2C4 "Uncharacterized protei 0.957 0.473 0.349 2.6e-56
UNIPROTKB|E1C5I5 794 EIF2C4 "Protein argonaute-4" [ 0.957 0.513 0.347 4.2e-56
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1341 (477.1 bits), Expect = 5.8e-137, P = 5.8e-137
 Identities = 256/426 (60%), Positives = 320/426 (75%)

Query:     1 VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQF 60
             V++ L+ +KV L H    +S KI+GISS P+ +L F  ++ +  +V+QYF EK N  +++
Sbjct:   386 VKKVLRTLKVKLLHWNGTKSAKISGISSLPIRELRFTLEDKSEKTVVQYFAEKYNYRVKY 445

Query:    61 TSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMM 120
              +LPA+  GS+ RP+YLPMEL +I  GQRYTKR NE+QVTALL+ATCQRP +RE +I+ +
Sbjct:   446 QALPAIQTGSDTRPVYLPMELCQIDEGQRYTKRLNEKQVTALLKATCQRPPDRENSIKNL 505

Query:   121 TRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINK 180
                N YNDD  +++EFG+ V   L  ++AR+LP PMLKYH+SG+E  VNP  GQWNMI+K
Sbjct:   506 VVKNNYNDD--LSKEFGMSVTTQLASIEARVLPPPMLKYHDSGKEKMVNPRLGQWNMIDK 563

Query:   181 KMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIE 240
             KM NG +V  WTCV+FST +D  +P +FC+ L+ +C SKGM F P+P IP  S  P  IE
Sbjct:   564 KMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIE 623

Query:   241 KALVDVHNRTTXXXXXXXXXXXXXPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQ 300
             +AL+D+H R               PD  GSYG+IKR+CETELGIVSQCCQP+Q +KL+ Q
Sbjct:   624 EALLDIHKRAPGLQLLIVIL----PDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQ 679

Query:   301 YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVV 360
             Y ENVALKINVK GGRNTVL DA+++ IPL+TDRPTII GADVTHPQ GEDSSPSIAAVV
Sbjct:   680 YMENVALKINVKTGGRNTVLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSIAAVV 739

Query:   361 ASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKP 420
             ASMDWPE+ KYRGLVSAQA  EEIIQDLYK +QDPQRGLVH G+IRE  IAF R+T + P
Sbjct:   740 ASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRATGQIP 799

Query:   421 ESIIFY 426
             + IIFY
Sbjct:   800 QRIIFY 805
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0048441 "petal development" evidence=RCA
GO:0048443 "stamen development" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGN2 EIF2C4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-452 ago3b "argonaute RISC catalytic component 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUQ5 Eif2c4 "Protein Eif2c4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HCK5 EIF2C4 "Protein argonaute-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SV64 EIF2C4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C5I5 EIF2C4 "Protein argonaute-4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00022116001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (873 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
cd04657 426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 6e-96
PLN03202 900 PLN03202, PLN03202, protein argonaute; Provisional 8e-84
pfam02171 296 pfam02171, Piwi, Piwi domain 4e-34
smart00950 301 smart00950, Piwi, This domain is found in the prot 6e-32
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 3e-25
pfam02170114 pfam02170, PAZ, PAZ domain 3e-24
cd04658 448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 5e-20
cd02826 393 cd02826, Piwi-like, Piwi-like: PIWI domain 5e-14
smart00949138 smart00949, PAZ, This domain is named PAZ after th 1e-08
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 1e-07
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information 
 Score =  294 bits (754), Expect = 6e-96
 Identities = 113/300 (37%), Positives = 156/300 (52%), Gaps = 34/300 (11%)

Query: 134 REFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTC 193
           +EFGI V+  +  V  R+LP P LKY       +V P  G WN+  KK   GG +  W  
Sbjct: 4   KEFGISVSKEMITVPGRVLPPPKLKYG--DSSKTVPPRNGSWNLRGKKFLEGGPIRSWAV 61

Query: 194 VNFSTDLDPDVPFQ----FCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNR 249
           +NF+              F   LV      G+      +    +S   ++E+    +   
Sbjct: 62  LNFAGPRRSREERADLRNFVDQLVKTVIGAGI-----NITTAIASVEGRVEELFAKLKQ- 115

Query: 250 TTQQGKQLQLLIIILPD-DKGSYGRIKRVCETELGIVSQCCQPKQASK-LSMQYFENVAL 307
              +G+  QL+++ILP  D   YGRIKR+ +TELGI +QC   K+ +K  + QYF NVAL
Sbjct: 116 --AKGEGPQLVLVILPKKDSDIYGRIKRLADTELGIHTQCVLAKKVTKKGNPQYFANVAL 173

Query: 308 KINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGE-DSSPSIAAVVASMDWP 366
           KIN+K+GG N  L        PL+T  PT++ GADVTHP  G+   +PSIAAVVAS+DW 
Sbjct: 174 KINLKLGGINHSLEP---DIRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVASVDWH 230

Query: 367 EVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKPESIIFY 426
              +Y   V  Q+  +EII DL               M+RELL AF ++T + PE II+Y
Sbjct: 231 L-AQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYY 276

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 426
PLN03202 900 protein argonaute; Provisional 100.0
KOG1041 876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042 845 consensus Germ-line stem cell division protein Hiw 100.0
cd04657 426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658 448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826 393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171 302 Piwi: Piwi domain; InterPro: IPR003165 This domain 99.96
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.91
cd04659 404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 99.86
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.81
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.81
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.8
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.61
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 99.04
COG1431 685 Argonaute homolog, implicated in RNA metabolism [T 96.19
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.3e-78  Score=649.07  Aligned_cols=407  Identities=36%  Similarity=0.637  Sum_probs=348.2

Q ss_pred             ChhhccCCEEEEeecCCceeEEEecccCCCCCCeEEecC--C-------CceeeHHHHHHHhcCccccCC-CCceEecCC
Q 037086            1 VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDD--N-------GTRMSVIQYFLEKSNIALQFT-SLPAVLAGS   70 (426)
Q Consensus         1 ~~~~l~gl~v~~~~~~~~~~~~I~~i~~~~a~~~~F~~~--~-------g~~itv~~Yf~~~y~i~l~~p-~~Plv~~~~   70 (426)
                      ++++|+|++|.++|.  +++|+|.||++.++++.+|...  +       |+++||+|||+++||++|+|| ++|||.+|+
T Consensus       291 ~~~~lkGl~V~t~~~--~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~  368 (900)
T PLN03202        291 AKRMLKNLRVKVSPS--NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGK  368 (900)
T ss_pred             HHHHhcCCEEEEecC--CceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCC
Confidence            368899999999995  5899999999999999999321  1       358999999999999999996 999999998


Q ss_pred             CCCcccccccceEecCCCccCCCCCHHHHHHHHHHhcCChhHHHHHHHHHHHHcCCCCCcccccccCeeecCceeEeeee
Q 037086           71 EARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDAR  150 (426)
Q Consensus        71 ~~k~~~~P~El~~i~~~Q~~~~~l~~~~~~~~i~~~~~~P~~r~~~i~~~~~~l~~~~~~~l~~~~Gi~i~~~~~~v~~r  150 (426)
                      ..+.+|||||||.|+|+|++..+|++.++++|+++|+..|.+|.+.|.++++.++++.++.|+ +|||+|+++|++|+||
T Consensus       369 ~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~-~fGi~i~~~~~~V~gR  447 (900)
T PLN03202        369 PKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPMLR-SCGISISSQFTQVEGR  447 (900)
T ss_pred             CCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHH-HCCcEecCCceEEeEE
Confidence            888899999999999999999999999999999999999999999999999998888789999 9999999999999999


Q ss_pred             ecCCCeeeeccCCcceeecCCCccccccccccccCcccceeEEEEeCCCCCCChHHHHHHHHHHHHHhcCCcCCCCCCcc
Q 037086          151 ILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIP  230 (426)
Q Consensus       151 vL~~P~i~~~~~~~~~~~~p~~g~W~~~~~~f~~~~~~~~w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~  230 (426)
                      +|+||+|.|+++.   .+.|.+|+|++++.+|+.|+++.+|++++|+++   ..++.|++.|.+.|+.+||.+..|....
T Consensus       448 vL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i~~p~~~~  521 (900)
T PLN03202        448 VLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR---CDIRHLVRDLIKCGEMKGINIEPPFDVF  521 (900)
T ss_pred             EcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc---hhHHHHHHHHHHHHHHCCceeCCCcccc
Confidence            9999999999753   245789999999999999999999999988643   3689999999999999999998754321


Q ss_pred             ccC------CCchHHHHHHHHHHHHHhhCCCCceEEEEEeCCC-CCc-hhhHhhhhccccceeeeeecccccccCCHhHH
Q 037086          231 ISS------SNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDD-KGS-YGRIKRVCETELGIVSQCCQPKQASKLSMQYF  302 (426)
Q Consensus       231 ~~~------~~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~-~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~  302 (426)
                      ...      ...+.++..++.+.+.+.   ..++|+|||+|++ +.+ |+.||++||.+.||+||||...   +.++|++
T Consensus       522 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~---~~~~q~~  595 (900)
T PLN03202        522 EENPQFRRAPPPVRVEKMFEQIQSKLP---GPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPT---RVNDQYL  595 (900)
T ss_pred             ccccccccccchHHHHHHHHHHHHhcc---CCCeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCcc---ccchHHH
Confidence            110      112345666666555432   4699999999975 566 9999999999999999999554   3478999


Q ss_pred             HHHHHhhhcccCceeeeeccccccCCCccCCCCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccceeeEEeecCCch
Q 037086          303 ENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHE  382 (426)
Q Consensus       303 ~ni~lKiN~KlGG~n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~~~~  382 (426)
                      +|||||||+||||+||.+..+....+|++.+.+|||||+||+||+++....|||||+|||+||+.+++|++.+++|.+++
T Consensus       596 ~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~  675 (900)
T PLN03202        596 TNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKV  675 (900)
T ss_pred             HHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCc
Confidence            99999999999999999875433457887778999999999999987644799999999999767999999999999999


Q ss_pred             hhhhhhhhccCCCCCCcchhhHHHHHHHHHHHHc-CCCCCceEeC
Q 037086          383 EIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRST-NRKPESIIFY  426 (426)
Q Consensus       383 e~i~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~n-~~~P~~IiiY  426 (426)
                      |+|++++...-+    ..+++|+.++|..|++.| +.+|++||||
T Consensus       676 E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~Iiiy  716 (900)
T PLN03202        676 EMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIF  716 (900)
T ss_pred             eeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEE
Confidence            999987421111    124889999999998875 6999999998

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
4f3t_A 861 Human Argonaute-2 - Mir-20a Complex Length = 861 3e-59
4ei1_A 859 Crystal Structure Of Human Argonaute2 Length = 859 8e-59
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 5e-43
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 8e-36
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 2e-35
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 3e-35
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 1e-32
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 5e-14
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 6e-14
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 1e-13
2yhb_A 437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 6e-12
2yha_A 388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 7e-12
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 2e-09
4f1n_A 1046 Crystal Structure Of Kluyveromyces Polysporus Argon 7e-08
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 3e-06
1vyn_A143 Structure And Nucleic Acid Binding Of The Drosophil 5e-06
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 8e-06
1r6z_P509 The Crystal Structure Of The Argonaute2 Paz Domain 3e-05
3mj0_A124 Crystal Structure Of Drosophia Ago-Paz Domain In Co 3e-05
2xdy_A145 Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do 3e-05
1t2r_A123 Structural Basis For 3' End Recognition Of Nucleic 4e-05
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  225 bits (574), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 216/430 (50%), Gaps = 32/430 (7%)
Query: 5   LKGIKVVLTHV-EYNRSYKITGISSQPMSQLMFI--DDNG--TRMSVIQYFLEKSNIALQ 59
           +KG+KV +TH  +  R Y++  ++ +P S   F    ++G     +V QYF ++  + L+
Sbjct: 264 IKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLR 323
Query: 60  FTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRM 119
           +  LP +  G E +  YLP+E+  IVAGQR  K+  + Q + ++RAT +   +R+E I  
Sbjct: 324 YPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISK 383
Query: 120 MTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASV-NPGFGQWNMI 178
           + R+ ++N D  V REFGI V D +T V  R+L  P + Y   GR  ++  P  G W+M 
Sbjct: 384 LMRSASFNTDPYV-REFGIMVKDEMTDVTGRVLQPPSILY--GGRNKAIATPVQGVWDMR 440
Query: 179 NKKMFNGGRVEVWTCVNFSTDLD-PDVPFQ-FCQGLVDVCNSKGMVFNPRPVIPISSSNP 236
           NK+   G  ++VW    F+      +V  + F + L  +    GM    +P     +   
Sbjct: 441 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGA 500
Query: 237 NQIEKALVDVHNRTTXXXXXXXXXXXXXPDDKGSYGRIKRVCETELGIVSQCCQPKQASK 296
           + +E     + N                P     Y  +KRV +T LG+ +QC Q K   +
Sbjct: 501 DSVEPMFRHLKN----TYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQR 556
Query: 297 LSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSI 356
            + Q   N+ LKINVK+GG N +L+   Q R P V  +P I  GADVTHP  G+   PSI
Sbjct: 557 TTPQTLSNLCLKINVKLGGVNNILLP--QGRPP-VFQQPVIFLGADVTHPPAGDGKKPSI 613
Query: 357 AAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRST 416
           AAVV SMD     +Y   V  Q   +EIIQDL               M+RELLI F +ST
Sbjct: 614 AAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKST 659
Query: 417 NRKPESIIFY 426
             KP  IIFY
Sbjct: 660 RFKPTRIIFY 669
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 Back     alignment and structure
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 Back     alignment and structure
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 Back     alignment and structure
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 1e-108
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 3e-83
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 7e-63
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 4e-59
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 4e-57
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 1e-55
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 7e-46
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 4e-42
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 3e-40
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 9e-40
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 5e-28
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 1e-27
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 1e-25
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 1e-22
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 3e-20
3qir_A148 PIWI-like protein 2; structural genomics consortiu 4e-13
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 2e-10
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 2e-07
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  338 bits (867), Expect = e-108
 Identities = 147/433 (33%), Positives = 214/433 (49%), Gaps = 30/433 (6%)

Query: 1   VEEALKGIKVVLTHVEY-NRSYKITGISSQPMSQLMFIDD----NGTRMSVIQYFLEKSN 55
             + +KG+KV +TH     R Y++  ++ +P S   F            +V QYF ++  
Sbjct: 260 FTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHK 319

Query: 56  IALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREE 115
           + L++  LP +  G E +  YLP+E+  IVAGQR  K+  + Q + ++RAT +   +R+E
Sbjct: 320 LVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQE 379

Query: 116 NIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQW 175
            I  + R+ ++N D    REFGI V D +T V  R+L  P + Y     +A   P  G W
Sbjct: 380 EISKLMRSASFNTDP-YVREFGIMVKDEMTDVTGRVLQPPSILYG-GRNKAIATPVQGVW 437

Query: 176 NMINKKMFNGGRVEVWTCVNFSTD--LDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISS 233
           +M NK+   G  ++VW    F+            F + L  +    GM    +P     +
Sbjct: 438 DMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYA 497

Query: 234 SNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQ 293
              + +E     + N        LQL+++ILP     Y  +KRV +T LG+ +QC Q K 
Sbjct: 498 QGADSVEPMFRHLKN----TYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKN 553

Query: 294 ASKLSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSS 353
             + + Q   N+ LKINVK+GG N +L+    +  P V  +P I  GADVTHP  G+   
Sbjct: 554 VQRTTPQTLSNLCLKINVKLGGVNNILLP---QGRPPVFQQPVIFLGADVTHPPAGDGKK 610

Query: 354 PSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFN 413
           PSIAAVV SMD     +Y   V  Q   +EIIQDL               M+RELLI F 
Sbjct: 611 PSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFY 656

Query: 414 RSTNRKPESIIFY 426
           +ST  KP  IIFY
Sbjct: 657 KSTRFKPTRIIFY 669
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 100.0
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 100.0
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.97
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.96
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.95
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.95
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 99.94
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 99.93
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 99.91
3qir_A148 PIWI-like protein 2; structural genomics consortiu 99.9
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 99.89
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 99.86
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 99.77
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 98.99
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
Probab=100.00  E-value=1.5e-82  Score=685.12  Aligned_cols=402  Identities=37%  Similarity=0.642  Sum_probs=351.9

Q ss_pred             hhhccCCEEEEeecC-CceeEEEecccCCCCCCeEEe--cCCCc--eeeHHHHHHHhcCccccCCCCceEecCCCCCccc
Q 037086            2 EEALKGIKVVLTHVE-YNRSYKITGISSQPMSQLMFI--DDNGT--RMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIY   76 (426)
Q Consensus         2 ~~~l~gl~v~~~~~~-~~~~~~I~~i~~~~a~~~~F~--~~~g~--~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~k~~~   76 (426)
                      +++|+|++|.++|.+ ++|+|+|.||++.++.+.+|.  +++|+  ++||+|||+++||++|+||+||||++|++++.+|
T Consensus       261 ~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~~~~~y  340 (861)
T 4f3t_A          261 TKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTY  340 (861)
T ss_dssp             HHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEESCTTTTEE
T ss_pred             HHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEecCCCCCcc
Confidence            578999999999965 468999999999889999993  35564  7999999999999999999999999998888999


Q ss_pred             ccccceEecCCCccCCCCCHHHHHHHHHHhcCChhHHHHHHHHHHHHcCCCCCcccccccCeeecCceeEeeeeecCCCe
Q 037086           77 LPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPM  156 (426)
Q Consensus        77 ~P~El~~i~~~Q~~~~~l~~~~~~~~i~~~~~~P~~r~~~i~~~~~~l~~~~~~~l~~~~Gi~i~~~~~~v~~rvL~~P~  156 (426)
                      ||||||.|+|||++..+|+++++++|++.|+..|.+|.+.|.++++.++++.++.|+ +||++|+++|++|+||+||||+
T Consensus       341 lP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~-~fGi~i~~~~~~v~gRvL~~P~  419 (861)
T 4f3t_A          341 LPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVR-EFGIMVKDEMTDVTGRVLQPPS  419 (861)
T ss_dssp             EEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHH-HTTCEECSSCEEEEEEECCCCC
T ss_pred             ccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHH-HCCCEEeCCeeEEEEEEecCce
Confidence            999999999999999999999999999999999999999999999999888889999 9999999999999999999999


Q ss_pred             eeeccCCcceeecCCCccccccccccccCcccceeEEEEeCCC--CCCChHHHHHHHHHHHHHhcCCcCCCCCCccccCC
Q 037086          157 LKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTD--LDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSS  234 (426)
Q Consensus       157 i~~~~~~~~~~~~p~~g~W~~~~~~f~~~~~~~~w~vi~~~~~--~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~  234 (426)
                      |.|+++++. .+.|.+|+|++++.+|++|+++.+|++++|++.  .+.+.++.|++.|.+.|+.+||++..+|.+.....
T Consensus       420 I~y~~~~~~-~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~  498 (861)
T 4f3t_A          420 ILYGGRNKA-IATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ  498 (861)
T ss_dssp             EECCSSSCC-EECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECC
T ss_pred             EEecCCccc-ccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEecC
Confidence            999975332 356789999999999999999999999988643  24567899999999999999999986554322122


Q ss_pred             CchHHHHHHHHHHHHHhhCCCCceEEEEEeCCCCCchhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcccC
Q 037086          235 NPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVG  314 (426)
Q Consensus       235 ~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~~~~Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~KlG  314 (426)
                      +.+.++..++.+.+..    .+++|||||+|++.+.|+.||+++|.+.||+||||..+++.|.++|++.||+||||+|||
T Consensus       499 ~~~~~~~~~~~l~~~~----~~~qlvl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlG  574 (861)
T 4f3t_A          499 GADSVEPMFRHLKNTY----AGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLG  574 (861)
T ss_dssp             SSSSHHHHHHHHHHHS----TTCCEEEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHhhc----CCCcEEEEEeCCCccHHHHHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcC
Confidence            3456677776665542    479999999996543399999999999999999999999999899999999999999999


Q ss_pred             ceeeeeccccccCCCccCCCCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccceeeEEeecCCchhhhhhhhhccCC
Q 037086          315 GRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQD  394 (426)
Q Consensus       315 G~n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~~~~e~i~~~~~~~~~  394 (426)
                      |+||.+.+.   ..|.+...+|||||+||+||++++...||+||||||+| ..+++|.+.+++|.+++|+|+++      
T Consensus       575 G~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~i~~l------  644 (861)
T 4f3t_A          575 GVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL------  644 (861)
T ss_dssp             CBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCCSCTTH------
T ss_pred             Ccceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcCCCccHHHHH------
Confidence            999998653   23444457999999999999988667899999999999 89999999999999999999999      


Q ss_pred             CCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 037086          395 PQRGLVHGGMIRELLIAFNRSTNRKPESIIFY  426 (426)
Q Consensus       395 ~~~~~~~~~~~~~~l~~f~~~n~~~P~~IiiY  426 (426)
                             ++|+.++|..|++.|+.+|+|||||
T Consensus       645 -------~~~~~~~L~~~~~~~~~~P~~Iiiy  669 (861)
T 4f3t_A          645 -------AAMVRELLIQFYKSTRFKPTRIIFY  669 (861)
T ss_dssp             -------HHHHHHHHHHHHHHHSCCCSEEEEE
T ss_pred             -------HHHHHHHHHHHHHHhCCCCceEEEE
Confidence                   9999999999999999999999998
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 426
d1yvua2 392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 3e-48
d1w9ha1 316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 2e-26
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 2e-23
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 4e-23
d1u04a2 447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 2e-22
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  167 bits (424), Expect = 3e-48
 Identities = 37/228 (16%), Positives = 78/228 (34%), Gaps = 39/228 (17%)

Query: 208 FCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDD 267
           F + L++   +KG+    +    I +    + ++ L+ V N+     K + L+I+ L + 
Sbjct: 58  FLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKI----KDVDLVIVFLEEY 113

Query: 268 KGS--------YGRIKRVCETELGIVSQCCQPKQASKLS-MQYFENVALKINVKVGGRNT 318
                      Y  +KR    +  I SQ    +     +      NVA ++  K G    
Sbjct: 114 PKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPY 172

Query: 319 VLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ 378
            L +        +  +     G D++   R   +  ++A         E+ +Y  L S  
Sbjct: 173 KLKE--------IEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYY-LTSYP 223

Query: 379 ARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKPESIIFY 426
           A  E++ +                  I ++     +   +K   I+ +
Sbjct: 224 AFGEKLTEK----------------AIGDVFSLLEKLGFKKGSKIVVH 255
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
d1yvua2 392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 99.97
d1w9ha1 316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 99.95
d1u04a2 447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.94
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.9
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.89
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.27
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=5.9e-31  Score=258.35  Aligned_cols=209  Identities=18%  Similarity=0.177  Sum_probs=155.3

Q ss_pred             ccceeEEEEeCC-CCCCChHHHHHHHHHHHHHhcCCcCCCCCCccccCCCchHHHHHHHHHHHHHhhCCCCceEEEEEeC
Q 037086          187 RVEVWTCVNFST-DLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILP  265 (426)
Q Consensus       187 ~~~~w~vi~~~~-~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~  265 (426)
                      .+..|.++.+.- ...+..+++|+++|.+.|++.||++...+...+-...+.+.+..+.+.++..    ..+++++||+|
T Consensus        36 ~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~vi~~  111 (392)
T d1yvua2          36 DVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKI----KDVDLVIVFLE  111 (392)
T ss_dssp             SEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTTT----SSCSEEEEEEC
T ss_pred             ccccceEEEEEEeehhhhHHHHHHHHHHHHHHhcCceecCCCcCeeecCCccchHHHHHHHHhhc----cCCCEEEEEEc
Confidence            456777776532 2456788999999999999999999754432222334456666666666543    57899999998


Q ss_pred             CCCC-------c-hhhHhhhhccccceeeeeecccccccCCHh-HHHHHHHhhhcccCceeeeeccccccCCCccCCCCe
Q 037086          266 DDKG-------S-YGRIKRVCETELGIVSQCCQPKQASKLSMQ-YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPT  336 (426)
Q Consensus       266 ~~~~-------~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~-~~~ni~lKiN~KlGG~n~~l~~~~~~~~p~l~~~~t  336 (426)
                      +..+       + |+.||+.+ ...||+||||..+++.+.+.+ ++.||++|||+||||+||.|...     |   ..+|
T Consensus       112 ~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~~-----~---~~~t  182 (392)
T d1yvua2         112 EYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI-----E---GKVD  182 (392)
T ss_dssp             ----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC-----T---TCCS
T ss_pred             CCCCcccccchhHHHHHHHHH-hcCCcccEEEChhhccCCCchHHHHHHHHHHHHHhCCcceECCCC-----C---CCCe
Confidence            7653       5 99999987 789999999999999876655 67899999999999999999642     3   2689


Q ss_pred             EEeeecccCCCCCCCCCCeEEEEEEeeCCCC-ccceeeEEeecCCchhhhhhhhhccCCCCCCcchhhHHHHHHHHHHHH
Q 037086          337 IIFGADVTHPQRGEDSSPSIAAVVASMDWPE-VTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRS  415 (426)
Q Consensus       337 miiG~DVsh~~~~~~~~pSi~avv~S~d~~~-~~~y~~~~~~Q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~  415 (426)
                      ||||+||+|++++. ..++++|++++.| .+ ...++.....|..++|.+                .+++.++|..|++.
T Consensus       183 miIGiDv~h~~~~~-~~~~~v~~~~~~~-~~g~~~~~~~~~~~~~~ee~~----------------~~~~~~~l~~~~~~  244 (392)
T d1yvua2         183 AFVGIDISRITRDG-KTVNAVAFTKIFN-SKGELVRYYLTSYPAFGEKLT----------------EKAIGDVFSLLEKL  244 (392)
T ss_dssp             EEEEECEEECCCSS-SCCCEEEEEEEEC-TTSCEEEEEEEEECSCTTHHH----------------HHHHHHHHHHHHHT
T ss_pred             EEEEEEEEecCCCC-CcccEEEEEEEEc-CCCCEEEEEEEecCCccHHHH----------------HHHHHHHHHHHHHh
Confidence            99999999998764 3556666666666 44 344555566777777766                55588899999999


Q ss_pred             cCCCCCceEeC
Q 037086          416 TNRKPESIIFY  426 (426)
Q Consensus       416 n~~~P~~IiiY  426 (426)
                      ||.+|++||||
T Consensus       245 ~~~~P~rIIi~  255 (392)
T d1yvua2         245 GFKKGSKIVVH  255 (392)
T ss_dssp             TCCTTCEEEEE
T ss_pred             cCCCCceEEEE
Confidence            99999999997
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure