Citrus Sinensis ID: 037115

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570--
MAKSDAVYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMERHNKKRIQQQERKTSRKPLSARSIPFHYNENEQKSEDIGRVDHKNAEIKKISRESSQNVKQLMQANHVKLSATTSNIGSGDMKEEHIGNTGSINISKQQTTAKIEAHEPRISAGDETVVVKFVDTAIVGKTEAEDACHHGLVDPTINMKEAINAINSMFREPLDTAKNGRRSHRKQNEENLGVQNGFEVFIDEDFDKGTESKEKKGVSLEQHSGAQICQPQQEQFKIFDDDEDSHGNGARNYDKENFEQIDDQHLSQGSSSSATFLNGFVFLRPSDLPSENSDDMDAERSPRVKLREDTVVHRFVGSTILDEPEVENVCHHGLVDPTINLKEAMEDINNMFGKPMDFVRAKRPKKQEKAAVRNQDPGGFSILPDDDLKPQHPAPPKPSSKSRDSDLLEPTMCTKEAMDEINKMFGMPL
cccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccEEEEEHHHHccccccHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccc
ccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHccccHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHccccccccccHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccHHHHHHHHHHHcccc
MAKSDAVYDTFFSSLIQDIksysgtdpllpwLQGIKKMKDslpskllkEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLmdfvddprVMLRTMEVnhigtkrsLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMERHNKKRIQQQErktsrkplsarsipfhyneneqksedigrvdhknAEIKKISRESSQNVKQLMQANHVKlsattsnigsgdmkeehigntgsiniskqqttakieaheprisagdeTVVVKFVDTAIVGkteaedachhglvdptiNMKEAINAINSMFrepldtakngrrshrkqneenlgvqngfevfidedfdkgteskekkgvsleqhsgaqicqpqqeqfkifdddedshgngarnydkenfeqiddqhlsqgssssatflngfvflrpsdlpsensddmdaersprvklredtvvhrfvgstildepevenvchhglvdptiNLKEAMEDINnmfgkpmdfvrakrpkkqekaavrnqdpggfsilpdddlkpqhpappkpssksrdsdlleptmcTKEAMDEINKMFGMPL
MAKSDAVYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCaqtfesdrryrnDMRYLRIWLHLMDFVDDPRVMLRTMEvnhigtkrslfYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMERHnkkriqqqerktsrkplsarsipfhyneneqksedigrvdHKNAEIKKISRESSQNVKQLMQANHVKLSATTSNIGSGDMKEEHIGNTGSINISKQQTTAKIEAheprisagdetvvVKFVDTAIVGKTEAEDACHHGLVDPTINMKEAINAINSMFREPLDTakngrrshrkqneenlgvqngfeVFIDEDFDKGTESKEKKGVSLEQHSGAQICQPQQEQFKIFDDDEDSHGNGARNYDKENFEQIDDQHLSQGSSSSATFLNGFVFLRPsdlpsensddmdaersprvklredtvvHRFVGstildepevenvCHHGLVDPTINLKEAMEDINNMFGKPMDFVRAKRPKKQekaavrnqdpggfsilpdddlkpQHPAppkpssksrdsdllePTMCTKEAMDEINKMFGMPL
MAKSDAVYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMkdslpskllkeklpRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALyyekmkkfeeaekmyHLGVQNLAEPADELQKSYEQFLHRMERHNKKRIQQQERKTSRKPLSARSIPFHYNENEQKSEDIGRVDHKNAEIKKISRESSQNVKQLMQANHVKLSATTSNIGSGDMKEEHIGNTGSINISKQQTTAKIEAHEPRISAGDETVVVKFVDTAIVGKTEAEDACHHGLVDPTINMKEAINAINSMFREPLDTAKNGRRSHRKQNEENLGVQNGFEVFIDEDFDKGTESKEKKGVSLEQHSGAQICQPQQEQFKIFDDDEDSHGNGARNYDKENFEQIDDQHLSQGSSSSATFLNGFVFLRPSDLPSENSDDMDAERSPRVKLREDTVVHRFVGSTILDEPEVENVCHHGLVDPTINLKEAMEDINNMFGKPMDFVRAKRPKKQEKAAVRNQDPGGFSILPDDdlkpqhpappkpssksrdsdllEPTMCTKEAMDEINKMFGMPL
******VYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKD*L**KLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNL************************************************************************************************************************************GDETVVVKFVDTAIVGKTEAEDACHHGLVDPTINMKEAINAINS****************************GFEVFI*************************************************************************FLNGFVFL*************************DTVVHRFVGSTILDEPEVENVCHHGLVDPTINLKEAMEDINNMF*****************************************************************************
**********FFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLP***LKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFL*******************************************************************************************************************************************************************************************************************************************************************************************************************************************INLKEAMEDINNMF***********************************************************MCTKEAMDEINKMFGMPL
MAKSDAVYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMERHN***************LSARSIPFHYNENEQKSEDIGRVDHKNAEIKKISRESSQNVKQLMQANHVKLSATTSNIGSGDMKEEHIGNTGSINISKQQTTAKIEAHEPRISAGDETVVVKFVDTAIVGKTEAEDACHHGLVDPTINMKEAINAINSMFREPLDTA**********NEENLGVQNGFEVFIDEDFDK*****************AQICQPQQEQFKIFDDDEDSHGNGARNYDKENFEQIDDQHLSQGSSSSATFLNGFVFLRPSDLP*************RVKLREDTVVHRFVGSTILDEPEVENVCHHGLVDPTINLKEAMEDINNMFGKPMDFVRA************NQDPGGFSILPDDDLK******************LEPTMCTKEAMDEINKMFGMPL
MAKSDAVYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMERH****************************************************************************************************************DETVVVKFVDTAIVGKTEAEDACHHGLVDPTINMKEAINAINSMFREPL*********************NGFEVFIDEDFD**************************EQFKIFDDDEDS****************************ATFLNGFV*L*PS******************KLREDTVVHRFVGSTILDEPEVENVCHHGLVDPTINLKEAMEDINNMFGKPMDFVRA*********************************************LLEPTMCTKEAMDEINKMFGMPL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKSDAVYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPxxxxxxxxxxxxxxxxxxxxxRIQQQERKTSRKPLSARSIPFHYNENEQKSEDIGRVDHKNAEIKKISRESSQNVKQLMQANHVKLSATTSNIGSGDMKEEHIGNTGSINISKQQTTAKIEAHEPRISAGDETVVVKFVDTAIVGKTEAEDACHHGLVDPTINMKEAINAINSMFREPLDTAKNGRRSHRKQNEENLGVQNGFEVFIDEDFDKGTESKEKKGVSLEQHSGAQICQPQQEQFKIFDDDEDSHGNGARNYDKENFEQIDDQHLSQGSSSSATFLNGFVFLRPSDLPSENSDDMDAERSPRVKLREDTVVHRFVGSTILDEPEVENVCHHGLVDPTINLKEAMEDINNMFGKPMDFVRAKRPKKQEKAAVRNQDPGGFSILPDDDLKPQHPAPPKPSSKSRDSDLLEPTMCTKEAMDEINKMFGMPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query572 2.2.26 [Sep-21-2011]
Q54CV5 1306 Probable inactive serine/ yes no 0.236 0.103 0.377 4e-22
O59767310 Mitotic spindle checkpoin yes no 0.223 0.412 0.341 5e-18
Q9Z1S0 1052 Mitotic checkpoint serine yes no 0.243 0.132 0.287 7e-14
O60566 1050 Mitotic checkpoint serine yes no 0.244 0.133 0.285 1e-13
O08901 1058 Mitotic checkpoint serine no no 0.267 0.144 0.281 3e-11
O43683 1085 Mitotic checkpoint serine no no 0.232 0.122 0.296 1e-09
P47074515 Spindle assembly checkpoi yes no 0.267 0.297 0.259 1e-08
P41695 1021 Checkpoint serine/threoni no no 0.232 0.130 0.269 3e-06
>sp|Q54CV5|BUB1_DICDI Probable inactive serine/threonine-protein kinase bub1 OS=Dictyostelium discoideum GN=bub1 PE=3 SV=1 Back     alignment and function desciption
 Score =  106 bits (265), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%)

Query: 19  IKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIW 78
           I  Y G DP+  WL+ IK ++ S P   +KE+L   L++C + F S  +Y+ND RYLRIW
Sbjct: 51  INEYQGEDPIDNWLKYIKWVQQSYPGGNMKEQLIVLLERCTRLFLSTEKYKNDPRYLRIW 110

Query: 79  LHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEP 138
           +   D   DP  +   +EV  IG   SL Y+A A+ YE    +E+A+K +  G++  A+P
Sbjct: 111 ITYADMCRDPIEVFSFLEVQRIGFYLSLLYEARAIVYENKGNYEQADKSFKQGIERKAQP 170

Query: 139 ADELQKSYEQFLHRM 153
            + LQ+ +  F  R+
Sbjct: 171 IERLQQKHLDFERRL 185

Dictyostelium discoideum (taxid: 44689)
>sp|O59767|MAD3_SCHPO Mitotic spindle checkpoint component mad3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mad3 PE=1 SV=2 Back     alignment and function description
>sp|Q9Z1S0|BUB1B_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 beta OS=Mus musculus GN=Bub1b PE=1 SV=2 Back     alignment and function description
>sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protein kinase BUB1 beta OS=Homo sapiens GN=BUB1B PE=1 SV=3 Back     alignment and function description
>sp|O08901|BUB1_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 OS=Mus musculus GN=Bub1 PE=2 SV=1 Back     alignment and function description
>sp|O43683|BUB1_HUMAN Mitotic checkpoint serine/threonine-protein kinase BUB1 OS=Homo sapiens GN=BUB1 PE=1 SV=1 Back     alignment and function description
>sp|P47074|MAD3_YEAST Spindle assembly checkpoint component MAD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAD3 PE=1 SV=1 Back     alignment and function description
>sp|P41695|BUB1_YEAST Checkpoint serine/threonine-protein kinase BUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUB1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query572
255574842533 conserved hypothetical protein [Ricinus 0.926 0.994 0.617 0.0
225448513529 PREDICTED: uncharacterized protein LOC10 0.907 0.981 0.569 1e-172
356568136522 PREDICTED: uncharacterized protein LOC10 0.896 0.982 0.567 1e-169
147866155631 hypothetical protein VITISV_041871 [Viti 0.910 0.825 0.458 1e-144
449453467498 PREDICTED: uncharacterized protein LOC10 0.863 0.991 0.510 1e-141
115487112622 Os12g0125300 [Oryza sativa Japonica Grou 0.905 0.832 0.398 1e-110
224112453488 predicted protein [Populus trichocarpa] 0.557 0.653 0.646 1e-109
108863948627 expressed protein [Oryza sativa Japonica 0.912 0.832 0.399 1e-109
357155414595 PREDICTED: uncharacterized protein LOC10 0.916 0.880 0.391 1e-107
125535632617 hypothetical protein OsI_37317 [Oryza sa 0.896 0.831 0.393 1e-105
>gi|255574842|ref|XP_002528328.1| conserved hypothetical protein [Ricinus communis] gi|223532283|gb|EEF34086.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/573 (61%), Positives = 416/573 (72%), Gaps = 43/573 (7%)

Query: 1   MAKSDAVYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQ 60
           MA +    D  FSSL+ DIKSY+G DPLLPWL+GIKKMKD LPS +LKEKLPRFLQKC Q
Sbjct: 1   MATNSLQNDLLFSSLVSDIKSYNGKDPLLPWLRGIKKMKDVLPSNVLKEKLPRFLQKCTQ 60

Query: 61  TFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKK 120
           TFESDRRYRND+RYLR+WL LMD+VD+PR++LR ME+N IG KRSLFYQA ALYYEK+KK
Sbjct: 61  TFESDRRYRNDLRYLRVWLQLMDYVDEPRMLLRAMEMNSIGVKRSLFYQAYALYYEKIKK 120

Query: 121 FEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMERHNKKRIQQQERKTSRKPLSARSIPF 180
           FEEAEKMYHLGVQNLAEP DELQ SYEQFL+R+ERH KK+IQ+QE +T R PLSAR    
Sbjct: 121 FEEAEKMYHLGVQNLAEPIDELQNSYEQFLNRVERHKKKKIQRQELRTGRIPLSARKTE- 179

Query: 181 HYNENEQKSEDIGRVDHKNAEIKKISRESSQNVKQLMQANHVKLSATTSNIGSGDMKEEH 240
             NEN    ED+          K I   SSQ           KL   ++ + +   K E 
Sbjct: 180 ENNENACNIEDMP---------KGILVRSSQK---------TKLQKESTGVLANSCKAEI 221

Query: 241 IGNTGSINISKQQTTAKIEAHEPRISAGDETVVVKFVDTAIVGKTEAEDACHHGLVDPTI 300
           +G+       K Q    IE+ + R+   D+TVVVKFVD AIVGK+EAEDACHHGLVDPTI
Sbjct: 222 VGDLS----MKDQLPTGIESGKSRMFHSDDTVVVKFVDIAIVGKSEAEDACHHGLVDPTI 277

Query: 301 NMKEAINAINSMFREPLDTAKNGRRSHRKQNEENLGVQNGFEVFIDEDFDKGTESKEKKG 360
           NMKEA+NAINSMFREP++TA+  RR  R Q +EN  + +GF VFIDE+ + GTES  +K 
Sbjct: 278 NMKEAMNAINSMFREPIETAQIIRR--RSQPKEN-NLDSGFNVFIDENLNNGTESSHQK- 333

Query: 361 VSLEQHSGAQICQPQQEQFKIFDDDEDSHGNGARNYDKENFEQIDDQHLSQGSSSSA-TF 419
                          +E F+IF DDE++  N   N + E+ EQ + Q+L++GS SS    
Sbjct: 334 ---------------EEPFQIFIDDEENGENAYTNDENEHVEQSETQNLAEGSHSSEHPK 378

Query: 420 LNGFVFLRPSDLPSENSDDMDAERSPRVKLREDTVVHRFVGSTILDEPEVENVCHHGLVD 479
           LN FVF  P D  SENSDD+ AERSPRVKLREDTVVHRFVGSTILDEP VENVCHHGLVD
Sbjct: 379 LNAFVFPCPKDPSSENSDDIHAERSPRVKLREDTVVHRFVGSTILDEPAVENVCHHGLVD 438

Query: 480 PTINLKEAMEDINNMFGKPMDFVRAKRPKKQEKAAVRNQDPGGFSILPDDDLKPQHPAPP 539
           PTINLKEAM+DINNMFGKP+DFVR KR KKQEKA V  Q+ GGF+ILPDDD + +   PP
Sbjct: 439 PTINLKEAMDDINNMFGKPIDFVRKKRAKKQEKAPVTKQEFGGFAILPDDDFEQRKGPPP 498

Query: 540 KPSSKSRDSDLLEPTMCTKEAMDEINKMFGMPL 572
             SS +RD+DL EPT+ TK+AMD+INKMFGMPL
Sbjct: 499 PKSSGARDTDLFEPTVFTKQAMDDINKMFGMPL 531

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448513|ref|XP_002273153.1| PREDICTED: uncharacterized protein LOC100248416 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356568136|ref|XP_003552269.1| PREDICTED: uncharacterized protein LOC100783816 [Glycine max] Back     alignment and taxonomy information
>gi|147866155|emb|CAN84128.1| hypothetical protein VITISV_041871 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453467|ref|XP_004144479.1| PREDICTED: uncharacterized protein LOC101216248 [Cucumis sativus] Back     alignment and taxonomy information
>gi|115487112|ref|NP_001066043.1| Os12g0125300 [Oryza sativa Japonica Group] gi|77553544|gb|ABA96340.1| protein kinase, putative, expressed [Oryza sativa Japonica Group] gi|113648550|dbj|BAF29062.1| Os12g0125300 [Oryza sativa Japonica Group] gi|125578358|gb|EAZ19504.1| hypothetical protein OsJ_35069 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|224112453|ref|XP_002316196.1| predicted protein [Populus trichocarpa] gi|222865236|gb|EEF02367.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|108863948|gb|ABA91291.2| expressed protein [Oryza sativa Japonica Group] gi|222615435|gb|EEE51567.1| hypothetical protein OsJ_32796 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357155414|ref|XP_003577112.1| PREDICTED: uncharacterized protein LOC100830663 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|125535632|gb|EAY82120.1| hypothetical protein OsI_37317 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query572
TAIR|locus:2169692471 AT5G05510 "AT5G05510" [Arabido 0.298 0.363 0.590 1.3e-123
DICTYBASE|DDB_G0292676 1306 bub1 "BUB family protein kinas 0.344 0.150 0.266 2.3e-13
TAIR|locus:2827363525 AT2G20635 [Arabidopsis thalian 0.232 0.253 0.298 1.8e-09
POMBASE|SPCC1795.01c310 mad3 "mitotic spindle checkpoi 0.230 0.425 0.278 1.9e-09
CGD|CAL0003517 900 BUB1 [Candida albicans (taxid: 0.174 0.111 0.34 2.4e-08
UNIPROTKB|Q5AFC9 900 BUB1 "Likely protein kinase" [ 0.174 0.111 0.34 2.4e-08
UNIPROTKB|F1PLV9 1052 BUB1B "Uncharacterized protein 0.342 0.186 0.254 5e-08
ASPGD|ASPL0000009709 1216 sldA [Emericella nidulans (tax 0.220 0.103 0.289 1.6e-07
UNIPROTKB|F1NDM5 1086 BUB1 "Uncharacterized protein" 0.223 0.117 0.265 7.4e-07
UNIPROTKB|F1MWP1 1062 BUB1B "Uncharacterized protein 0.347 0.187 0.239 4e-06
TAIR|locus:2169692 AT5G05510 "AT5G05510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 511 (184.9 bits), Expect = 1.3e-123, Sum P(3) = 1.3e-123
 Identities = 101/171 (59%), Positives = 119/171 (69%)

Query:     1 MAKSDAVYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMXXXXXXXXXXXXXXRFLQKCAQ 60
             MAK++  Y+   +SLI DIKSYSG D LLPW++G+KKM              RFLQKCA+
Sbjct:     1 MAKNENGYENLLASLIVDIKSYSGKDHLLPWIRGVKKMKESLPSQILNEKLPRFLQKCAE 60

Query:    61 TFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALXXXXXXX 120
             +FESD+RY+ND RY+R+WL LMDFVDDPR +LRTME   IGTKRSLFYQA AL       
Sbjct:    61 SFESDKRYKNDSRYIRVWLQLMDFVDDPRALLRTMEAKSIGTKRSLFYQAYALHYEKMKR 120

Query:   121 XXXXXXXXHLGVQNLAEPADELQKSYEQFLHRMERHNKKRIQQQERKTSRK 171
                      LGVQNLAEP DELQKSY QF+ RMERH KK+ Q+QE+K S K
Sbjct:   121 FEDAEKMYRLGVQNLAEPMDELQKSYLQFVTRMERHKKKKTQRQEQKLSGK 171
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
DICTYBASE|DDB_G0292676 bub1 "BUB family protein kinase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2827363 AT2G20635 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPCC1795.01c mad3 "mitotic spindle checkpoint protein Mad3" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0003517 BUB1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AFC9 BUB1 "Likely protein kinase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLV9 BUB1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ASPGD|ASPL0000009709 sldA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1NDM5 BUB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWP1 BUB1B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.11.1LOW CONFIDENCE prediction!
3rd Layer2.7.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
4351380
Mad3/BUB1 homology region 1 domain containing protein, expressed (622 aa)
(Oryza sativa Japonica)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
pfam08311124 pfam08311, Mad3_BUB1_I, Mad3/BUB1 homology region 1e-42
smart00777124 smart00777, Mad3_BUB1_I, Mad3/BUB1 hoMad3/BUB1 hom 5e-41
>gnl|CDD|191994 pfam08311, Mad3_BUB1_I, Mad3/BUB1 homology region 1 Back     alignment and domain information 
 Score =  148 bits (376), Expect = 1e-42
 Identities = 44/120 (36%), Positives = 75/120 (62%), Gaps = 1/120 (0%)

Query: 14  SLIQDIKSYS-GTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDM 72
           S  ++I++Y  G DPL  WL+ IK  +++ P    +  L   L++C + FE D RY+ND+
Sbjct: 5   SFEEEIQNYEEGDDPLDLWLRYIKWTEEAYPQGGKQSGLLTLLERCVKYFEDDERYKNDV 64

Query: 73  RYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGV 132
           RYL+IWL  +++  +PR + + +    IGTK +LFY+  A   E   KF++A++++ LG+
Sbjct: 65  RYLKIWLKYIEYFSEPRDIFQYLYSKGIGTKLALFYEEWASLLESRGKFKKADEVFQLGI 124

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. Length = 124
>gnl|CDD|214817 smart00777, Mad3_BUB1_I, Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 572
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 100.0
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 100.0
KOG1166 974 consensus Mitotic checkpoint serine/threonine prot 100.0
PF15297353 CKAP2_C: Cytoskeleton-associated protein 2 C-termi 96.31
KOG1915677 consensus Cell cycle control protein (crooked neck 95.28
KOG2047 835 consensus mRNA splicing factor [RNA processing and 95.13
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 94.94
KOG1915677 consensus Cell cycle control protein (crooked neck 94.37
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 94.17
KOG1914656 consensus mRNA cleavage and polyadenylation factor 92.66
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 91.82
KOG2047835 consensus mRNA splicing factor [RNA processing and 91.34
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 91.27
PF02631121 RecX: RecX family; InterPro: IPR003783 RecX is a p 90.1
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 89.04
KOG1258577 consensus mRNA processing protein [RNA processing 88.5
PRK14136309 recX recombination regulator RecX; Provisional 87.45
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 86.55
KOG1166 974 consensus Mitotic checkpoint serine/threonine prot 84.58
KOG0495913 consensus HAT repeat protein [RNA processing and m 82.47
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 82.14
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 81.97
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 81.03
KOG1914656 consensus mRNA cleavage and polyadenylation factor 80.94
smart0074577 MIT Microtubule Interacting and Trafficking molecu 80.31
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information 
Probab=100.00  E-value=1.1e-45  Score=332.85  Aligned_cols=122  Identities=36%  Similarity=0.670  Sum_probs=118.5

Q ss_pred             HHHHHHHHHh-hcCCCCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCcCCH
Q 037115           10 TFFSSLIQDI-KSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDP   88 (572)
Q Consensus        10 ~~fssLes~I-~sYsGDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dDP   88 (572)
                      ...+.||.+| +.|+|||||++|++||+|++++||+|+.+++|..||||||++|+++++||||+|||||||+||++|++|
T Consensus         3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~dp   82 (125)
T smart00777        3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCDEP   82 (125)
T ss_pred             HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCCH
Confidence            4467899999 889999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 037115           89 RVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLG  131 (572)
Q Consensus        89 ~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlG  131 (572)
                      .+||+||+++|||+++|+||++||.+||.+|+|++|++||++|
T Consensus        83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G  125 (125)
T smart00777       83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG  125 (125)
T ss_pred             HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999999998

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein [] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PRK14136 recX recombination regulator RecX; Provisional Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
4aez_C223 Crystal Structure Of Mitotic Checkpoint Complex Len 6e-11
3si5_A176 Kinetochore-Bubr1 Kinase Complex Length = 176 5e-09
2wvi_A164 Crystal Structure Of The N-Terminal Domain Of Bubr1 5e-09
4a1g_A152 The Crystal Structure Of The Human Bub1 Tpr Domain 6e-04
2lah_A160 Solution Nmr Structure Of Mitotic Checkpoint Serine 8e-04
>pdb|4AEZ|C Chain C, Crystal Structure Of Mitotic Checkpoint Complex Length = 223 Back     alignment and structure 
Iteration: 1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 26  DPLLPWLQGIK-KMXXXXXXXXXXXXXXRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDF 84
           DPL  W+  IK  +                L++C + F  +  Y++D+RYLRIW+  +++
Sbjct: 70  DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129
Query: 85  VDDPRVMLRTMEVNHIGTKRSLFYQANALXXXXXXXXXXXXXXXHLGVQNLAEPADELQK 144
           +D+P  +   +  +HIG + S+FY+  A                  G +  A+P    Q+
Sbjct: 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQ 189
Query: 145 SYEQFLHRM 153
            Y+QF HR 
Sbjct: 190 KYQQFTHRW 198
>pdb|3SI5|A Chain A, Kinetochore-Bubr1 Kinase Complex Length = 176 Back     alignment and structure
>pdb|2WVI|A Chain A, Crystal Structure Of The N-Terminal Domain Of Bubr1 Length = 164 Back     alignment and structure
>pdb|4A1G|A Chain A, The Crystal Structure Of The Human Bub1 Tpr Domain In Complex With The Ki Motif Of Knl1 Length = 152 Back     alignment and structure
>pdb|2LAH|A Chain A, Solution Nmr Structure Of Mitotic Checkpoint SerineTHREONINE-Protein Kinase Bub1 N-Terminal Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr5460a (Methods Development) Length = 160 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 2e-51
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 5e-48
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 2e-44
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 3e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Length = 164 Back     alignment and structure
 Score =  172 bits (438), Expect = 2e-51
 Identities = 41/158 (25%), Positives = 78/158 (49%)

Query: 15  LIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRY 74
              +I+ Y+G DPL  W + I   + + P    +  +   L++  +  + ++RY +D R+
Sbjct: 6   FEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRF 65

Query: 75  LRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQN 134
           L +WL L    ++P  M   +    IG   + FY + A  YE  + F +A+ ++  G+Q 
Sbjct: 66  LNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125

Query: 135 LAEPADELQKSYEQFLHRMERHNKKRIQQQERKTSRKP 172
            AEP + LQ  + QF  R+ R     ++++E +   + 
Sbjct: 126 KAEPLERLQSQHRQFQARVSRQTLLALEKEEEEEVFES 163
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Length = 152 Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 223 Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Length = 202 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query572
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 100.0
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 100.0
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 100.0
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 100.0
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 99.25
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 97.9
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 97.77
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 97.15
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 97.12
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 96.77
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 96.46
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 96.36
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 96.3
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 86.97
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 86.59
3u3w_A293 Transcriptional activator PLCR protein; ternary co 86.46
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 86.21
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 86.0
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 85.4
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 84.72
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 84.21
4i17_A228 Hypothetical protein; TPR repeats protein, structu 83.66
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 83.03
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 82.95
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 82.27
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 82.26
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 81.72
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 81.69
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 81.1
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 80.7
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 80.31
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Back     alignment and structure
Probab=100.00  E-value=7.5e-54  Score=399.24  Aligned_cols=152  Identities=26%  Similarity=0.512  Sum_probs=144.6

Q ss_pred             HHHHHHhhcCCCCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCcCCHHHHH
Q 037115           13 SSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVML   92 (572)
Q Consensus        13 ssLes~I~sYsGDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dDP~dIF   92 (572)
                      +.||++|+.|+|||||++|++||+|++++||+|+.+++|..||||||++|+++++|+||+|||||||+||++|++|.+||
T Consensus         4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~~p~~if   83 (164)
T 2wvi_A            4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPLDMY   83 (164)
T ss_dssp             HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCCHHHHH
Confidence            57899999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 037115           93 RTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMERHNKKRIQQQ  164 (572)
Q Consensus        93 ~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~rr~~r~~q~e  164 (572)
                      +||+++|||+++|+||++||.+||..|+|++|++||++||+++|+|+++|+++|++|+.||+++++.+++..
T Consensus        84 ~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~~~~~~~~~~~~  155 (164)
T 2wvi_A           84 SYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARVSRQTLLALEKE  155 (164)
T ss_dssp             HHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999888654
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query572
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 98.47
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 97.4
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 81.42
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=4.2e-07  Score=83.91  Aligned_cols=118  Identities=19%  Similarity=0.241  Sum_probs=88.4

Q ss_pred             cHHHHHHHHHHHhhCCCCcc-----cCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCc-----------------
Q 037115           28 LLPWLQGIKKMKDSLPSKLL-----KEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFV-----------------   85 (572)
Q Consensus        28 LdpWlrYIkWiEEsyPsGg~-----ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~-----------------   85 (572)
                      |+.|.+||.|- ...|....     ......++|||+..+..         +-.||+.|+.++                 
T Consensus         8 ~~~W~~yi~~E-~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~---------~~~lW~~y~~~~~~~~~~~~~~~~~~~~~   77 (308)
T d2onda1           8 VDMWKKYIQWE-KSNPLRTEDQTLITKRVMFAYEQCLLVLGH---------HPDIWYEAAQYLEQSSKLLAEKGDMNNAK   77 (308)
T ss_dssp             HHHHHHHHHHH-HTCTTCCCCHHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             HHHHHHHHHHH-HhCcccccccchhHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHcCchHHHHHHHhhcc
Confidence            68999999994 44443211     12355689999998754         446999999874                 


Q ss_pred             ---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH
Q 037115           86 ---DDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMERH  156 (572)
Q Consensus        86 ---dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~rr  156 (572)
                         +.+..+|+..... .......+|..||.+++..|++++|..||...|.........+...|-.|..|....
T Consensus        78 ~~~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~  150 (308)
T d2onda1          78 LFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI  150 (308)
T ss_dssp             HHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH
T ss_pred             cchHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCh
Confidence               2344566655432 245667899999999999999999999999999987777777888899998876553
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure