Citrus Sinensis ID: 037127

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MNLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKGDD
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccccccccccHHHHHHHccccHHHHcHHHHHHHHHccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHccccEEEEcccHHHHcccccccccEEEEEcccccccccccEEEEccccccccHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHcccEEEEEEcccccccccEEEEEccHHHHHHcccccccHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHcccccccEEEEEcHHHHcccccccccEEEEEcccccccccccEEEccccHHHccHHHHHHHHHHHHHHcccccEEcEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
mnlidgdhDTELLEAQAHVWNHIFNFINSMSLKCAVElsipdiinkhgkpttlNDLVSAltinpsktrCVYRLMRILIHSGFFaqqtlnssrnnndeeqgYVLTNAsklllkdsplsvtPLLQAVLdpillspwlklstwfqsddpapfdmvhgksfweyagdepkinnffNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKafpnlectdfdlphvvnGLESDLANLkyvggdmfeaippADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKGDD
Flexible Loop (DISEMBL)
MNLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKckeaitsnskigkviiIDMMRENKKGDD
Low Complexity Region (SEG)
MNLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKGDD
Disordered region (IsUnstruct)
**********ELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT************GYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM*********
Disordered Region (DISOPRED)
***************QAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLN*****NDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID***E******
Disordered Region (DISEMBL)
MNLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKGDD
Disordered Region (DISPRO)
*********TELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKGDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
B6VJS4	357	Trans-resveratrol di-O-me	no	no	0.980	0.843	0.633	1e-112
Q93WU2	357	Eugenol O-methyltransfera	N/A	no	0.889	0.764	0.528	1e-82
Q6VMW0	366	8-hydroxyquercetin 8-O-me	N/A	no	0.954	0.800	0.536	2e-82
B0EXJ8	355	Tabersonine 16-O-methyltr	N/A	no	0.941	0.814	0.518	3e-82
Q93WU3	356	Chavicol O-methyltransfer	N/A	no	0.885	0.764	0.510	9e-81
Q8GSN1	348	Myricetin O-methyltransfe	N/A	no	0.938	0.827	0.491	2e-79
Q84KK4	365	Isoflavone 4'-O-methyltra	N/A	no	0.947	0.797	0.483	5e-77
O24529	352	Isoflavone-7-O-methyltran	N/A	no	0.957	0.835	0.486	1e-76
O22308	352	Isoflavone-7-O-methyltran	N/A	no	0.957	0.835	0.486	2e-76
O22309	352	Isoflavone-7-O-methyltran	N/A	no	0.957	0.835	0.483	2e-75

>sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/306 (63%), Positives = 235/306 (76%), Gaps = 5/306 (1%)

Query: 1   MNLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSAL 60
           M+L +G    ELL AQAHVWNHIFNFI SMSLKCA++L IPDII+ HGKP TL +LV+ L
Sbjct: 1   MDLANGVISAELLHAQAHVWNHIFNFIKSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKL 60

Query: 61  TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTP 120
            ++P +++CVYRLMRIL+HSGF A Q +   +    EE+GYVLT+AS+LLL D  LS+ P
Sbjct: 61  PVHPKRSQCVYRLMRILVHSGFLAAQRVQQGK----EEEGYVLTDASRLLLMDDSLSIRP 116

Query: 121 LLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDAR 180
           L+ A+LDPIL  PW  LS WFQ+DDP PF   + +SFW+YAG EP++NN FNEAMASDAR
Sbjct: 117 LVLAMLDPILTKPWHYLSAWFQNDDPTPFHTAYERSFWDYAGHEPQLNNSFNEAMASDAR 176

Query: 181 LATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA 240
           L T V++ + + VF GLNSLVDVGG TG VAKAIA AFP+L CT  DL HVV GL+    
Sbjct: 177 LLTSVLLKEGQGVFAGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLSHVVAGLQGS-K 235

Query: 241 NLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300
           NL Y  GDMFEAIPPADA++LKWILHDW++EECVKILK+C+EAI S    GKVIIIDM+ 
Sbjct: 236 NLNYFAGDMFEAIPPADAILLKWILHDWSNEECVKILKRCREAIPSKENGGKVIIIDMIM 295

Query: 301 ENKKGD 306
              +GD
Sbjct: 296 MKNQGD 301

Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME).
Vitis vinifera (taxid: 29760)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 0

>sp|Q93WU2|EOMT1_OCIBA Eugenol O-methyltransferase OS=Ocimum basilicum GN=EOMT1 PE=1 SV=1

 Score =  306 bits (784), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/280 (52%), Positives = 200/280 (71%), Gaps = 7/280 (2%)

Query: 11  ELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCV 70
           +LL+AQ HVWNH++ F NSMSLKCA++L IPDI++KHG+P TL+ L+ ++ IN  KT+C 
Sbjct: 14  QLLQAQVHVWNHMYAFANSMSLKCAIQLGIPDILHKHGRPMTLSQLLQSIPINKEKTQCF 73

Query: 71  YRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPIL 130
            RLMR L++S FF ++      N+N++E  Y LT AS LLLK++PL+VTPL+Q VLDP  
Sbjct: 74  QRLMRALVNSNFFIEE-----NNSNNQEVCYWLTPASCLLLKEAPLTVTPLVQVVLDPTF 128

Query: 131 LSPWLKLSTWFQSDDPA-PFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHK 189
            +PW  +S WF  +  A  F+  +G +FWE   +EP    FF+EAM+ D+RL   V    
Sbjct: 129 TNPWHHMSEWFTHEKHATQFEAANGCTFWEKLANEPSKGRFFDEAMSCDSRLIAHVFTKD 188

Query: 190 CKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDM 249
            K+V EG+ +LVDVGG  GT+AKAI +A P ++CT  DLPHVV GLES   NL Y+GGDM
Sbjct: 189 YKHVIEGIRTLVDVGGGNGTMAKAIVEAMPTIKCTVIDLPHVVAGLEST-DNLNYIGGDM 247

Query: 250 FEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSK 289
           F++IP ADA++LK I+HDW+D E +KILKKCK+A+    K
Sbjct: 248 FQSIPSADAILLKSIIHDWDDVEGLKILKKCKDAVVMGGK 287

Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of eugenol to methyleugenol. Can also convert chavicol to methylchavicol but with less affinity.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 6

>sp|Q6VMW0|Q8OMT_MENPI 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1

 Score =  305 bits (782), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/298 (53%), Positives = 211/298 (70%), Gaps = 5/298 (1%)

Query: 11  ELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCV 70
           ELLEAQAHVWNHI+++INSMSLKCA++L IPD I+KHG P TL+ L  AL IN +K+  +
Sbjct: 12  ELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKAKSHGL 71

Query: 71  YRLMRILIHSGFF---AQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLD 127
           +RLMRIL+HSGFF     +      +  +EE  Y LT AS+LLL+  PLSV P   A+ D
Sbjct: 72  FRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFALAMSD 131

Query: 128 PILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVI 187
           P+    W  LS WF++D  A FD  +G +F EYA  + ++N  FNEAMA DA     ++ 
Sbjct: 132 PVYTETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNSILT 191

Query: 188 HKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGG 247
            +C+ +F+GL S+VDVGG TG  AK IA AFP +ECT  DLP+VV GL+    NL +V G
Sbjct: 192 TECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGS-ENLSFVSG 250

Query: 248 DMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAIT-SNSKIGKVIIIDMMRENKK 304
           DMF+ IP ADA+ +K+ILHDWNDEECVKILKKCKEAI+ SN+   K+I+++++ E++K
Sbjct: 251 DMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDEK 308

8-O-methyltransferase active on various hydroxylated flavonoid substrates, including 7,8,3'4'-tetrahydroxy-flavone, 7,8,4'-trihydroxy-flavone and 8-hydroxy-flavone 7-methyl ether.

Mentha piperita (taxid: 34256)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 8

>sp|B0EXJ8|HTOMT_CATRO Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT PE=1 SV=1

 Score =  305 bits (781), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/301 (51%), Positives = 213/301 (70%), Gaps = 12/301 (3%)

Query: 11  ELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALT--INPSKTR 68
           E   AQA +W+   +FI S SLKCAV+L IPD I+ HGKP TL++L +AL   ++PSK  
Sbjct: 7   EFRGAQAQIWSQSCSFITSASLKCAVKLGIPDTIDNHGKPITLSELTNALVPPVHPSKAP 66

Query: 69  CVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDP 128
            +YRLMR+L  +GF +++ L+      + E  Y LT +S++LLK  PL++  ++  + DP
Sbjct: 67  FIYRLMRVLAKNGFCSEEQLD-----GETEPLYSLTPSSRILLKKEPLNLRGIVLTMADP 121

Query: 129 ILLSPWLKLSTWFQSDDPA--PFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVV 186
           + L  W  LS W+Q++D +   F+  HGK+FW Y+ +  +   FFNEAMASD++L ++++
Sbjct: 122 VQLKAWESLSDWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLL 181

Query: 187 IHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVG 246
           I + K +FEGL SLVD+GG TGT+AKAIAK FP L+CT FDLPHVV  LES   N+++V 
Sbjct: 182 IGEYKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESK-ENVEFVA 240

Query: 247 GDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKGD 306
           GDMFE IP A+A+ LKWILHDWNDE+CVKILK CK+AI   +K GKVIIIDM+  + K D
Sbjct: 241 GDMFEKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIP--AKGGKVIIIDMVMYSDKKD 298

Query: 307 D 307
           D
Sbjct: 299 D 299

16-O-methyltransferase involved in the biosynthesis of vindoline. Highly specific for 16-hydroxytabersonine. No activity with tabersonine, 3-hydroxytyramine, 4-hydroxytyramine, 5-hydroxytryptamine (5HT), 2,3-dihydro-3-hydroxytabersonine, lochnericine, hoerhammericine, 16-hydroxy-2,3-dihydro-3-hydroxytabersonine, 16-hydroxylochnericine, 16-hydroxyhoerhammericine, quercetin, kaempferol and caffeic acid as substrates.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q93WU3|CVMT1_OCIBA Chavicol O-methyltransferase OS=Ocimum basilicum GN=CVOMT1 PE=1 SV=1

 Score =  300 bits (768), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 143/280 (51%), Positives = 202/280 (72%), Gaps = 8/280 (2%)

Query: 11  ELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCV 70
           +LL+AQAHVWNH++ F NSMSLKCA++L IPDI++KH  P TL+ L+ A+ IN  K++  
Sbjct: 14  QLLQAQAHVWNHMYAFANSMSLKCAIQLGIPDILHKHDHPMTLSQLLKAIPINKEKSQSF 73

Query: 71  YRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPIL 130
            RLMR L++S FF ++      N+N++E  Y LT AS+LLLK +PL+V PL+Q VLDP  
Sbjct: 74  QRLMRALVNSNFFIEE------NSNNQEVCYWLTPASRLLLKGAPLTVAPLVQVVLDPTF 127

Query: 131 LSPWLKLSTWFQSDDPA-PFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHK 189
            +PW  +S WF+ ++ A  F+  +G +FWE   ++P +  FF+EAM+ D+RL   V+   
Sbjct: 128 TNPWHYMSEWFKHENHATQFEAANGCTFWEKLANKPSMGRFFDEAMSCDSRLVAHVLTKD 187

Query: 190 CKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDM 249
            K+V +G+ +LVDVGG  GT+AKAI +A P ++CT  DLPHVV GLES    L Y+GGDM
Sbjct: 188 YKHVIDGIRTLVDVGGGNGTMAKAIVEAVPTMKCTVLDLPHVVAGLEST-DKLSYIGGDM 246

Query: 250 FEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSK 289
           F++IP ADA++LK+I+HDW+DEE +KILK+CK+A+    K
Sbjct: 247 FQSIPSADAILLKFIIHDWDDEEGLKILKRCKDAVGIGGK 286

Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of chavicol to methylchavicol. Can also convert eugenol to methyleugenol but with less affinity.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 6

>sp|Q8GSN1|MOMT_CATRO Myricetin O-methyltransferase OS=Catharanthus roseus PE=1 SV=1

 Score =  295 bits (756), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 148/301 (49%), Positives = 210/301 (69%), Gaps = 13/301 (4%)

Query: 8   HDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKT 67
             +E+  AQAH +  +F+F +  SLKCAV+L IPD I+ HGKP  L+DL ++L INPSK 
Sbjct: 4   QSSEIRNAQAHFFTQVFSFTSMSSLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINPSKA 63

Query: 68  RCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLD 127
             +YRLMRIL+ +G+F+++          E+  Y LT  ++LLLK+ PL+   ++  V  
Sbjct: 64  PYIYRLMRILVAAGYFSEE----------EKNVYSLTPFTRLLLKNDPLNSISMVLGVNQ 113

Query: 128 PILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVI 187
              L  W  +S WFQ++D   F+  HGK+FW++ G E K    F+  MA+D+ L ++++I
Sbjct: 114 IAELKAWNAMSEWFQNEDLTAFETAHGKNFWDF-GAEDKYGKNFDGVMAADSILVSKMLI 172

Query: 188 HKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGG 247
            +   +FEGL+SLVDVGG TGT+AKAIAK+FP+L+CT FDLPHVV  LES   NL++VGG
Sbjct: 173 PEFNYLFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLEST-ENLEFVGG 231

Query: 248 DMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID-MMRENKKGD 306
           DMFE IP A+A++LKWILHDW DEECVK+LK C++AI    K GKVI+I+ ++ ++KK +
Sbjct: 232 DMFEKIPSANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHE 291

Query: 307 D 307
           +
Sbjct: 292 N 292

Methylates myricetin and dihydromyricetin at 2 sites. Inactive towards 16-hydroxytabersonine, the phenylpropanoids 5-hydroxyferulate, caffeate and their CoA-esters, flavones and flavonones possessing 2 or 3 B-ring hydroxyl groups.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 9

>sp|Q84KK4|I4OMT_LOTJA Isoflavone 4'-O-methyltransferase OS=Lotus japonicus GN=HI4'OMT PE=1 SV=1

 Score =  288 bits (736), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 144/298 (48%), Positives = 201/298 (67%), Gaps = 7/298 (2%)

Query: 5   DGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINP 64
           +G  DTEL +AQ H++ H++NF++SM+LK A+EL I D+I+ HGKP TL +L +AL + P
Sbjct: 7   NGSEDTELSQAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPITLPELATALNLRP 66

Query: 65  SKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQA 124
           SK   ++R +R+L H+GFFA+ T+ S     +EE  Y LT  SKLL+K +   + P+++ 
Sbjct: 67  SKIGVLHRFLRLLTHNGFFAKTTV-SRGEGAEEETAYGLTPPSKLLVKSNSTCLAPIVKG 125

Query: 125 VLDPILLSPWLKLSTWFQSDDP--APFDMVHGKSFWEYAGDEPKIN--NFFNEAMASDAR 180
            L P  L  W     WF  D+     F+   G+SFWE+   E + +  + F EAMA+D+ 
Sbjct: 126 ALHPSSLDMWRSSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSMFQEAMAADSH 185

Query: 181 LATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA 240
           +  ++ + +CK+VFEGL SLVDV G  G V K I +AFP+++CT FD P VV  L  D  
Sbjct: 186 M-FKLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGD-E 243

Query: 241 NLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298
           NL +VGGDMF+++PPADAV+LKW+LHDWNDE  +KILK CKEAI+   K GKVIIID+
Sbjct: 244 NLNFVGGDMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDI 301

2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone as substrate, but not daidzein.

Lotus japonicus (taxid: 34305)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 2

>sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1

 Score =  286 bits (732), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/304 (48%), Positives = 203/304 (66%), Gaps = 10/304 (3%)

Query: 4   IDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTIN 63
           I+G   +E+ +AQA ++ HI+ FI+SMSLK AVE++IP+II  HGKP +L++LVS L + 
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64

Query: 64  PSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQ 123
            SK   V RLMR L H+GFF   T         EE+ Y LT AS+LL++ S L + P+++
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIIT--------KEEESYALTVASELLVRGSDLCLAPMVE 116

Query: 124 AVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLAT 183
            VLDP L   + +L  W   +D   F +  G  FW++    P+ N  FN+AMASD++L  
Sbjct: 117 CVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-I 175

Query: 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLK 243
            + +  C  VF+GL S+VDVGG TGT AK I + FP L+C  FD P VV  L S   NL 
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLT 234

Query: 244 YVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303
           YVGGDMF +IP ADAV+LK+ILH+W D++C++ILKKCKEA+T++ K GKV IIDM+ + K
Sbjct: 235 YVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKK 294

Query: 304 KGDD 307
           K ++
Sbjct: 295 KDEN 298

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1

 Score =  286 bits (731), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 148/304 (48%), Positives = 203/304 (66%), Gaps = 10/304 (3%)

Query: 4   IDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTIN 63
           I+G   +E+ +AQA ++ HI+ FI+SMSLK AVE++IP+II  HGKP +L++LVS L + 
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64

Query: 64  PSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQ 123
            SK   V RLMR L H+GFF   T         EE+ Y LT AS+LL++ S L + P+++
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIIT--------KEEESYALTVASELLVRGSDLCLAPMVE 116

Query: 124 AVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLAT 183
            VLDP L   + +L  W   +D   F +  G  FW++    P+ N  FN+AMASD++L  
Sbjct: 117 CVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-I 175

Query: 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLK 243
            + +  C  VF+GL S+VDVGG TGT AK I + FP L+C  FD P VV  L S   NL 
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLT 234

Query: 244 YVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303
           YVGGDMF +IP ADAV+LK+ILH+W D++C++ILKKCKEA+T++ K GKV IIDM+ + K
Sbjct: 235 YVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDEK 294

Query: 304 KGDD 307
           K ++
Sbjct: 295 KDEN 298

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1

 Score =  283 bits (723), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/304 (48%), Positives = 202/304 (66%), Gaps = 10/304 (3%)

Query: 4   IDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTIN 63
           I+G   +E+ +AQA ++ HI+ FI+SMSLK AV ++IP+II+ HGKP +L++LVS L + 
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVGMNIPNIIHNHGKPISLSNLVSILQVP 64

Query: 64  PSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQ 123
            SK   V RLMR L H+GFF   T         EE+ Y LT AS+LL++ S L + P+++
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIIT--------KEEESYALTVASELLVRGSDLCLAPMVE 116

Query: 124 AVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLAT 183
            VLDP L   + +L  W   +D   F +  G  FW++    P+ N  FN+AMASD++L  
Sbjct: 117 CVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-I 175

Query: 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLK 243
            + +  C  VF+GL S+VDVGG TGT AK I + FP L+C  FD P VV  L S   NL 
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLT 234

Query: 244 YVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303
           YVGGDMF +IP ADAV+LK+ILH+W D++C++ILKKCKEA+T++ K GKV IIDM+   K
Sbjct: 235 YVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVINEK 294

Query: 304 KGDD 307
           K ++
Sbjct: 295 KDEN 298

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
225446491	357	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.983	0.845	0.697	1e-123
147816431	357	hypothetical protein VITISV_020020 [Viti	0.983	0.845	0.690	1e-122
225446489	357	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.983	0.845	0.677	1e-122
123718188	346	putative orcinol O-methyltransferase [Ro	0.967	0.858	0.683	1e-121
123718174	346	putative orcinol O-methyltransferase [Ro	0.977	0.867	0.679	1e-121
123718172	346	putative orcinol O-methyltransferase [Ro	0.967	0.858	0.683	1e-120
123718254	346	putative orcinol O-methyltransferase [Ro	0.967	0.858	0.679	1e-120
123718216	346	putative orcinol O-methyltransferase [Ro	0.967	0.858	0.679	1e-120
123718182	346	putative orcinol O-methyltransferase [Ro	0.967	0.858	0.679	1e-120
123718218	346	putative orcinol O-methyltransferase [Ro	0.967	0.858	0.679	1e-120

>gi|225446491|ref|XP_002278211.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/307 (69%), Positives = 249/307 (81%), Gaps = 5/307 (1%)

Query: 1   MNLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSAL 60
           M+L   +  +ELL AQAHVWNHIFNFINSMSLKCA++L IPDII+ HGKP TL +LV+ L
Sbjct: 1   MDLESVETSSELLHAQAHVWNHIFNFINSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKL 60

Query: 61  TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTP 120
            I+P K  CVYRLMRIL+ SGFFA+Q +  S    ++E+GYVLT+AS+LLL+D PLSV P
Sbjct: 61  PIHPKKVWCVYRLMRILVQSGFFARQKVEES----EQEEGYVLTHASRLLLEDDPLSVRP 116

Query: 121 LLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDAR 180
            L A+LDPIL  PW  +S WFQ+DDP PFD  HG++FW+Y G EPKINNFFNEAMASDAR
Sbjct: 117 FLLAMLDPILTKPWHYVSAWFQNDDPTPFDTAHGRTFWDYGGHEPKINNFFNEAMASDAR 176

Query: 181 LATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA 240
           L T V+I  CK VFEGLNSLVDVGG TGTVAKAIA AFP+L CT FDLPHVV GLE    
Sbjct: 177 LVTSVLIKDCKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVFDLPHVVAGLEGS-K 235

Query: 241 NLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300
           NL Y+GGDMF+ IPPADA++LKWILHDWNDEECVKIL++C++AI S  K GKVIIIDMM 
Sbjct: 236 NLNYLGGDMFKGIPPADAILLKWILHDWNDEECVKILQQCRQAIPSKEKGGKVIIIDMMM 295

Query: 301 ENKKGDD 307
           EN+KGDD
Sbjct: 296 ENQKGDD 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816431|emb|CAN61955.1| hypothetical protein VITISV_020020 [Vitis vinifera]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/307 (69%), Positives = 247/307 (80%), Gaps = 5/307 (1%)

Query: 1   MNLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSAL 60
           M+L   +  +ELL AQAHVWNHIFNFINSMSLKCA++L IPDII+ HGKP TL +LV+ L
Sbjct: 1   MDLESVETSSELLHAQAHVWNHIFNFINSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKL 60

Query: 61  TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTP 120
            I+P K  CVYRLMRIL+ SGFFA+Q +  S    ++E+GYVLT+AS+LLL+D PLSV P
Sbjct: 61  PIHPKKVWCVYRLMRILVQSGFFARQKVEES----EQEEGYVLTHASRLLLEDDPLSVRP 116

Query: 121 LLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDAR 180
            L A+LDPIL  PW  +S WFQ+DDP PFD  HG +FW+Y G EPKJNNFFNEAMASDAR
Sbjct: 117 FLLAMLDPILTKPWHYVSAWFQNDDPTPFDTAHGXTFWDYGGHEPKJNNFFNEAMASDAR 176

Query: 181 LATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA 240
           L T  +I  CK VFEGLNSLVDVGG TGTVAKAIA AFP+L CT FDLPHVV GLE    
Sbjct: 177 LVTSXLIKDCKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVFDLPHVVAGLEGS-K 235

Query: 241 NLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300
           NL Y+GGDMF+ IPPADA++LKWILHDWNDEECVKIL++C++AI S  K GKVIIIDMM 
Sbjct: 236 NLNYLGGDMFKGIPPADAILLKWILHDWNDEECVKILQQCRQAIPSKEKGGKVIIIDMMM 295

Query: 301 ENKKGDD 307
           EN+KGDD
Sbjct: 296 ENQKGDD 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446489|ref|XP_002278190.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/307 (67%), Positives = 247/307 (80%), Gaps = 5/307 (1%)

Query: 1   MNLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSAL 60
           M L  G+  TELL A AHVWNHIFNFINSMSLKCA+EL IPDII+ HGKP TL++LV+ L
Sbjct: 1   MALAVGETSTELLHAHAHVWNHIFNFINSMSLKCAIELGIPDIIHNHGKPMTLSELVAEL 60

Query: 61  TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTP 120
            +NP KT+CVYRLMR+L+ SGFF ++ +  S     +E+GYVLT+AS+LLLKD PLS  P
Sbjct: 61  PVNPEKTKCVYRLMRLLVQSGFFTRKRVQES----GQEEGYVLTHASRLLLKDDPLSARP 116

Query: 121 LLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDAR 180
            L A+LDP+L++PW  +S WFQ+DDP PFD  HG++FW+YAG EPK+NNFFNEAMASDAR
Sbjct: 117 FLLAMLDPVLITPWQYVSAWFQNDDPTPFDTAHGRTFWDYAGHEPKLNNFFNEAMASDAR 176

Query: 181 LATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA 240
           L T V+I  CK +F GLNSLVDVGG TGTVA+AIA AFP+L CT  DLPHVV GLE    
Sbjct: 177 LVTSVLIKDCKGIFVGLNSLVDVGGGTGTVARAIANAFPHLNCTVLDLPHVVAGLEGS-K 235

Query: 241 NLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300
           NL Y+ GDMFEAIPPADA++LKWILHDWN +ECVKILK+C++AI S  K GKVIIIDMM 
Sbjct: 236 NLNYLAGDMFEAIPPADAILLKWILHDWNHDECVKILKRCRDAIPSKEKGGKVIIIDMMM 295

Query: 301 ENKKGDD 307
           EN+K DD
Sbjct: 296 ENQKADD 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718188|emb|CAJ65609.1| putative orcinol O-methyltransferase [Rosa bracteata]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/303 (68%), Positives = 247/303 (81%), Gaps = 6/303 (1%)

Query: 5   DGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINP 64
           +G+H  ELL AQAH+WNHIF+FINSMSLK A++L IPDIINKHG P TL++L SAL I+P
Sbjct: 5   NGEHSNELLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHP 64

Query: 65  SKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQA 124
           +K+  VYRLMRIL+HSGFFA++ L+++     +E+GY LT+AS+LLLKD PLS+TP L A
Sbjct: 65  TKSHSVYRLMRILVHSGFFAKKKLSTT-----DEEGYTLTDASQLLLKDHPLSITPFLTA 119

Query: 125 VLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATR 184
           +LDP+L  PW  LSTWFQ+DDP PFD  HG +FW+Y   +P I +FFN+AMASDARL T 
Sbjct: 120 MLDPVLTKPWNYLSTWFQNDDPTPFDTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTS 179

Query: 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKY 244
           V+I  CK VFEGL SLVDVGG TGTVAKAIA AFP++ECT  DLPHVV  L+    NLKY
Sbjct: 180 VIIDDCKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGS-KNLKY 238

Query: 245 VGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304
            GGDMFEA+PPADAV+LKWILHDWNDEECVKILK+ +EAITS  K GKVIIIDMM EN+K
Sbjct: 239 TGGDMFEAVPPADAVLLKWILHDWNDEECVKILKRSREAITSKDKKGKVIIIDMMMENQK 298

Query: 305 GDD 307
           GD+
Sbjct: 299 GDE 301

Source: Rosa bracteata

Species: Rosa bracteata

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718174|emb|CAJ65602.1| putative orcinol O-methyltransferase [Rosa banksiae]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/306 (67%), Positives = 248/306 (81%), Gaps = 6/306 (1%)

Query: 2   NLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALT 61
           N  +G+H  ELL AQAH+WNHIF+FINSMSLK A++L IPDIINKHG P TL++L SAL 
Sbjct: 2   NWSNGEHSNELLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTSALP 61

Query: 62  INPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPL 121
           I+P+K+  VYRLMR L+HSGFFA++ L+++     +E+GY LT+AS+LLLKD PLS+TP 
Sbjct: 62  IHPTKSHSVYRLMRTLVHSGFFAKKKLSTT-----DEEGYTLTDASQLLLKDHPLSLTPF 116

Query: 122 LQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARL 181
           L A+LDP+L  PW  LSTWFQ+DDPAPFD  HG +FW+Y   +P I +FFN+AMASDARL
Sbjct: 117 LTAMLDPVLTKPWNYLSTWFQNDDPAPFDTAHGMTFWDYGNHQPSIAHFFNDAMASDARL 176

Query: 182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLAN 241
            T V+I  CK VFEGL SLVDVGG TGTVAKAIA AFP++ECT  DLPHVV  L+    N
Sbjct: 177 VTSVIIDDCKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGS-KN 235

Query: 242 LKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301
           LKY GGDMFEA+PPADAV+LKWILHDWNDEECVKILK+ +EAITS  K GKVIIIDMM E
Sbjct: 236 LKYTGGDMFEAVPPADAVLLKWILHDWNDEECVKILKRSREAITSKDKKGKVIIIDMMME 295

Query: 302 NKKGDD 307
           N+KGD+
Sbjct: 296 NQKGDE 301

Source: Rosa banksiae

Species: Rosa banksiae

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718172|emb|CAJ65601.1| putative orcinol O-methyltransferase [Rosa chinensis]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/303 (68%), Positives = 244/303 (80%), Gaps = 6/303 (1%)

Query: 5   DGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINP 64
           +G+H  ELL AQAH+WNHIF+FINSMSLK A++L IPDIINKHG P TL++L SAL I+P
Sbjct: 5   NGEHSNELLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHP 64

Query: 65  SKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQA 124
           +K+  VYRLMRIL+HSGFFA++ L+ +     +E+GY LTNAS+LLLKD PLS+TP L A
Sbjct: 65  TKSHSVYRLMRILVHSGFFAKKKLSKT-----DEEGYTLTNASQLLLKDHPLSLTPFLTA 119

Query: 125 VLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATR 184
           +LDP+L  PW  LSTWFQ+DDP PFD  HG +FW+Y   +P I +FFN+AMASDARL T 
Sbjct: 120 MLDPVLTKPWNYLSTWFQNDDPTPFDTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTS 179

Query: 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKY 244
           V+I  CK VFEGL SLVDVGG TGTVAKAIA AFP +ECT  DLPHVV  L+    NLKY
Sbjct: 180 VIIDDCKGVFEGLESLVDVGGGTGTVAKAIADAFPYIECTVLDLPHVVANLQGS-KNLKY 238

Query: 245 VGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304
            GGDMFEA+PPAD V+LKWILHDWNDEECVKILK+ +EAITS  K GKVIIIDMM EN+K
Sbjct: 239 TGGDMFEAVPPADTVLLKWILHDWNDEECVKILKRSREAITSKDKNGKVIIIDMMMENQK 298

Query: 305 GDD 307
           GD+
Sbjct: 299 GDE 301

Source: Rosa chinensis

Species: Rosa chinensis

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718254|emb|CAJ65642.1| putative orcinol O-methyltransferase [Rosa marretii]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/303 (67%), Positives = 245/303 (80%), Gaps = 6/303 (1%)

Query: 5   DGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINP 64
           +G+H  ELL AQAH+WNHIF+FINS SLK A++L IPDIINKHG P TL++L SAL I+P
Sbjct: 5   NGEHSNELLHAQAHIWNHIFSFINSTSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHP 64

Query: 65  SKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQA 124
           +K+  VYRLMRIL+HSGFFA++ L+ +     +E+GY LT+AS+LLLKD PLS+TP L A
Sbjct: 65  TKSHSVYRLMRILVHSGFFAKKKLSKT-----DEEGYTLTDASQLLLKDHPLSLTPFLTA 119

Query: 125 VLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATR 184
           +LDP+L  PW  LSTWFQ+DDP PFD  HG +FW+Y   +P I +FFN+AMASDARL T 
Sbjct: 120 MLDPVLTKPWNYLSTWFQNDDPTPFDTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTS 179

Query: 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKY 244
           V+I  CK VFEGL SLVDVGG TGTVAKAIA AFP++ECT  DLPHVV  L+    NLKY
Sbjct: 180 VIIDDCKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGS-KNLKY 238

Query: 245 VGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304
            GGDMFEA+PPAD V+LKWILHDWNDEECVKILK+ +EAITS  K GKVIIIDMMREN+K
Sbjct: 239 TGGDMFEAVPPADTVLLKWILHDWNDEECVKILKRSREAITSKDKKGKVIIIDMMRENQK 298

Query: 305 GDD 307
           GD+
Sbjct: 299 GDE 301

Source: Rosa marretii

Species: Rosa marretii

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718216|emb|CAJ65623.1| putative orcinol O-methyltransferase [Rosa gallica]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/303 (67%), Positives = 246/303 (81%), Gaps = 6/303 (1%)

Query: 5   DGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINP 64
           +G+H  ELL AQAH+WNHIF+FINSMSLK A++L IPDIINKHG P TL++L SAL I+P
Sbjct: 5   NGEHSNELLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHP 64

Query: 65  SKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQA 124
           +K+  VYRLMRIL+HSGFFA++ L+ +     +E+GY LT+AS+LLLKD PLS+TP L A
Sbjct: 65  TKSHSVYRLMRILVHSGFFAKKKLSKT-----DEEGYTLTDASQLLLKDHPLSLTPFLTA 119

Query: 125 VLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATR 184
           +LDP+L  PW  LSTWFQ+DDP PFD  HG +FW+Y   +P I +FFN+AMASDARL T 
Sbjct: 120 MLDPVLTKPWNYLSTWFQNDDPTPFDTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTS 179

Query: 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKY 244
           V+I  CK VFEGL SLVDVGG TGTVAKAIA AFP++ECT  DLPHVV  L+    NLKY
Sbjct: 180 VIIDDCKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGS-KNLKY 238

Query: 245 VGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304
            GGDMFEA+PPAD V+LKWILHDWNDEECVKILK+ +EAITS +K GKVIIIDMM EN+K
Sbjct: 239 TGGDMFEAVPPADTVLLKWILHDWNDEECVKILKRSREAITSKAKNGKVIIIDMMMENQK 298

Query: 305 GDD 307
           GD+
Sbjct: 299 GDE 301

Source: Rosa gallica

Species: Rosa gallica

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718182|emb|CAJ65606.1| putative orcinol O-methyltransferase [Rosa beggeriana]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/303 (67%), Positives = 245/303 (80%), Gaps = 6/303 (1%)

Query: 5   DGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINP 64
           +G+H  ELL AQAH+WNHIF+FINSMSLK A++L IPDIINKHG P TL++L SAL I+P
Sbjct: 5   NGEHSNELLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTSALLIHP 64

Query: 65  SKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQA 124
           +K+  VYRLMRIL+HSGFFA++ L+ +     +E+GY LT+AS+LLLKD PLS+TP L A
Sbjct: 65  TKSHSVYRLMRILVHSGFFAKKKLSKT-----DEEGYTLTDASQLLLKDHPLSLTPFLTA 119

Query: 125 VLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATR 184
           +LDP+L  PW  LSTWFQ+DDP PFD  HG +FW+Y   +P I +FFN+AMASDARL T 
Sbjct: 120 MLDPVLTKPWNYLSTWFQNDDPTPFDTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTS 179

Query: 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKY 244
           V+I  CK VFEGL SLVDVGG TGTVAKAIA AFP++ECT  DLPHVV  L+    NLKY
Sbjct: 180 VIIDDCKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGS-KNLKY 238

Query: 245 VGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304
            GGDMFEA+PPAD V+LKWILHDWNDEECVKILK+ +EAITS  K GKVIIIDMM EN+K
Sbjct: 239 TGGDMFEAVPPADTVLLKWILHDWNDEECVKILKRSREAITSKDKKGKVIIIDMMMENQK 298

Query: 305 GDD 307
           GD+
Sbjct: 299 GDE 301

Source: Rosa beggeriana

Species: Rosa beggeriana

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718218|emb|CAJ65624.1| putative orcinol O-methyltransferase [Rosa gallica]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/303 (67%), Positives = 245/303 (80%), Gaps = 6/303 (1%)

Query: 5   DGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINP 64
           +G+H  ELL AQAH+WNHIF+FINSMSLK A++L IPDIINKHG P TL++L SAL I+P
Sbjct: 5   NGEHSNELLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHP 64

Query: 65  SKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQA 124
           +K+  VYRLMRIL+HSGFFA++ L+ +     +E+GY LT+AS+LLLKD PLS+TP L A
Sbjct: 65  TKSHSVYRLMRILVHSGFFAKKKLSKT-----DEEGYTLTDASQLLLKDHPLSLTPFLTA 119

Query: 125 VLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATR 184
           +LDP+L  PW  LSTWFQ+DDP PFD  HG +FW+Y   +P I +FFN+AMASDARL T 
Sbjct: 120 MLDPVLTKPWNYLSTWFQNDDPTPFDTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTS 179

Query: 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKY 244
           V+I  CK VFEGL SLVDVGG TGTVAKAIA AFP++ECT  DLPHVV  L+    NLKY
Sbjct: 180 VIIDDCKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGS-TNLKY 238

Query: 245 VGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304
            GGDMFEA+PPAD V+LKWILHDWNDEECVKILK+ +EAITS  K GKVIIIDMM EN+K
Sbjct: 239 TGGDMFEAVPPADTVLLKWILHDWNDEECVKILKRSREAITSKDKKGKVIIIDMMMENQK 298

Query: 305 GDD 307
           GD+
Sbjct: 299 GDE 301

Source: Rosa gallica

Species: Rosa gallica

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
UNIPROTKB|Q6VMW0	366	OMT2 "8-hydroxyquercetin 8-O-m	0.954	0.800	0.540	7.2e-84
UNIPROTKB|B0EXJ8	355	16OMT "Tabersonine 16-O-methyl	0.941	0.814	0.518	2.1e-77
UNIPROTKB|Q8GSN1	348	Q8GSN1 "Myricetin O-methyltran	0.931	0.821	0.494	2.5e-74
UNIPROTKB|Q84KK6	367	HI4'OMT "Isoflavone 4'-O-methy	0.977	0.817	0.470	1.1e-73
UNIPROTKB|Q84KK4	365	HI4'OMT "Isoflavone 4'-O-methy	0.973	0.819	0.473	3.6e-73
UNIPROTKB|Q84KK5	357	D7OMT "Isoflavone 7-O-methyltr	0.960	0.826	0.461	4.3e-70
UNIPROTKB|A8QW53	374	OMT3 "5-pentadecatrienyl resor	0.993	0.815	0.409	1.7e-59
TAIR|locus:2132806	382	AT4G35160 [Arabidopsis thalian	0.921	0.740	0.402	8.6e-56
TAIR|locus:2132801	325	AT4G35150 [Arabidopsis thalian	0.488	0.461	0.450	1.6e-47
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.846	0.716	0.359	3.6e-41

UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)]

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 161/298 (54%), Positives = 212/298 (71%)

Query:    11 ELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCV 70
             ELLEAQAHVWNHI+++INSMSLKCA++L IPD I+KHG P TL+ L  AL IN +K+  +
Sbjct:    12 ELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKAKSHGL 71

Query:    71 YRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLKDSPLSVTPLLQAVLD 127
             +RLMRIL+HSGFF +  +       DEE+    Y LT AS+LLL+  PLSV P   A+ D
Sbjct:    72 FRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFALAMSD 131

Query:   128 PILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVI 187
             P+    W  LS WF++D  A FD  +G +F EYA  + ++N  FNEAMA DA     ++ 
Sbjct:   132 PVYTETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNSILT 191

Query:   188 HKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGG 247
              +C+ +F+GL S+VDVGG TG  AK IA AFP +ECT  DLP+VV GL+    NL +V G
Sbjct:   192 TECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGS-ENLSFVSG 250

Query:   248 DMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAIT-SNSKIGKVIIIDMMRENKK 304
             DMF+ IP ADA+ +K+ILHDWNDEECVKILKKCKEAI+ SN+   K+I+++++ E++K
Sbjct:   251 DMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDEK 308

GO:0009812 "flavonoid metabolic process" evidence=IDA

GO:0030761 "8-hydroxyquercitin 8-O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 156/301 (51%), Positives = 213/301 (70%)

Query:    11 ELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALT--INPSKTR 68
             E   AQA +W+   +FI S SLKCAV+L IPD I+ HGKP TL++L +AL   ++PSK  
Sbjct:     7 EFRGAQAQIWSQSCSFITSASLKCAVKLGIPDTIDNHGKPITLSELTNALVPPVHPSKAP 66

Query:    69 CVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDP 128
              +YRLMR+L  +GF +++ L+      + E  Y LT +S++LLK  PL++  ++  + DP
Sbjct:    67 FIYRLMRVLAKNGFCSEEQLDG-----ETEPLYSLTPSSRILLKKEPLNLRGIVLTMADP 121

Query:   129 ILLSPWLKLSTWFQSDDPAP--FDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVV 186
             + L  W  LS W+Q++D +   F+  HGK+FW Y+ +  +   FFNEAMASD++L ++++
Sbjct:   122 VQLKAWESLSDWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLL 181

Query:   187 IHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVG 246
             I + K +FEGL SLVD+GG TGT+AKAIAK FP L+CT FDLPHVV  LES   N+++V 
Sbjct:   182 IGEYKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESK-ENVEFVA 240

Query:   247 GDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKGD 306
             GDMFE IP A+A+ LKWILHDWNDE+CVKILK CK+AI +  K GKVIIIDM+  + K D
Sbjct:   241 GDMFEKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIPA--KGGKVIIIDMVMYSDKKD 298

Query:   307 D 307
             D
Sbjct:   299 D 299

GO:0005737 "cytoplasm" evidence=IDA

GO:0009821 "alkaloid biosynthetic process" evidence=IDA

GO:0030766 "11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 148/299 (49%), Positives = 210/299 (70%)

Query:    10 TELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRC 69
             +E+  AQAH +  +F+F +  SLKCAV+L IPD I+ HGKP  L+DL ++L INPSK   
Sbjct:     6 SEIRNAQAHFFTQVFSFTSMSSLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINPSKAPY 65

Query:    70 VYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPI 129
             +YRLMRIL+ +G+F+++          E+  Y LT  ++LLLK+ PL+   ++  V    
Sbjct:    66 IYRLMRILVAAGYFSEE----------EKNVYSLTPFTRLLLKNDPLNSISMVLGVNQIA 115

Query:   130 LLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHK 189
              L  W  +S WFQ++D   F+  HGK+FW++ G E K    F+  MA+D+ L ++++I +
Sbjct:   116 ELKAWNAMSEWFQNEDLTAFETAHGKNFWDF-GAEDKYGKNFDGVMAADSILVSKMLIPE 174

Query:   190 CKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDM 249
                +FEGL+SLVDVGG TGT+AKAIAK+FP+L+CT FDLPHVV  LES   NL++VGGDM
Sbjct:   175 FNYLFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLEST-ENLEFVGGDM 233

Query:   250 FEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID-MMRENKKGDD 307
             FE IP A+A++LKWILHDW DEECVK+LK C++AI    K GKVI+I+ ++ ++KK ++
Sbjct:   234 FEKIPSANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHEN 292

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 145/308 (47%), Positives = 203/308 (65%)

Query:     5 DGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINP 64
             +G  + EL  AQ H++ H++NF++SM+LK A+EL I D+I+ HGKP TL +L SAL ++P
Sbjct:     6 NGSEEIELYHAQIHLYKHVYNFVSSMALKSAMELGIADVIHNHGKPITLPELASALKLHP 65

Query:    65 SKTRCVYRLMRILIHSGFFAQQTL---NSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPL 121
             SK   +YR +R+L H+GFFA+ T+   N      +EE  Y LT  SKLL+K  P  +  +
Sbjct:    66 SKVGILYRFLRLLTHNGFFAKTTVPSQNGKDGEEEEETAYALTPPSKLLVKGKPTCLASI 125

Query:   122 LQAVLDPILLSPWLKLSTWFQSDDPAP-FDMVHGKSFWEYAGDEPKIN--NFFNEAMASD 178
             ++  L P  L  W     WF+ D     F+   G+SFW++   + +    + F EAMA+D
Sbjct:   126 VRGALHPSSLDMWRSSEKWFKEDKELTLFESATGESFWDFLNKDSESGTLSMFQEAMAAD 185

Query:   179 ARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESD 238
             +++  ++ + +C++VFEGL SLVDVGG TG V K I + FP+L+CT FD P VV  L  +
Sbjct:   186 SQMF-KLALKECRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSGN 244

Query:   239 LANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298
               NLK+VGGDMF++IPPADAV+LKW+LHDWNDE  +KILK  KEAI+   K GKVIIID+
Sbjct:   245 -ENLKFVGGDMFKSIPPADAVLLKWVLHDWNDELSLKILKNSKEAISGKGKEGKVIIIDI 303

Query:   299 MRENKKGD 306
               +   GD
Sbjct:   304 SIDEASGD 311

GO:0009701 "isoflavonoid phytoalexin biosynthetic process" evidence=IDA

GO:0030746 "isoflavone 4'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 145/306 (47%), Positives = 203/306 (66%)

Query:     5 DGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINP 64
             +G  DTEL +AQ H++ H++NF++SM+LK A+EL I D+I+ HGKP TL +L +AL + P
Sbjct:     7 NGSEDTELSQAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPITLPELATALNLRP 66

Query:    65 SKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQA 124
             SK   ++R +R+L H+GFFA+ T+ S     +EE  Y LT  SKLL+K +   + P+++ 
Sbjct:    67 SKIGVLHRFLRLLTHNGFFAKTTV-SRGEGAEEETAYGLTPPSKLLVKSNSTCLAPIVKG 125

Query:   125 VLDPILLSPWLKLSTWFQSDDP--APFDMVHGKSFWEYAGDEPKIN--NFFNEAMASDAR 180
              L P  L  W     WF  D+     F+   G+SFWE+   E + +  + F EAMA+D+ 
Sbjct:   126 ALHPSSLDMWRSSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSMFQEAMAADSH 185

Query:   181 LATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA 240
             +  ++ + +CK+VFEGL SLVDV G  G V K I +AFP+++CT FD P VV  L  D  
Sbjct:   186 MF-KLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGD-E 243

Query:   241 NLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300
             NL +VGGDMF+++PPADAV+LKW+LHDWNDE  +KILK CKEAI+   K GKVIIID+  
Sbjct:   244 NLNFVGGDMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDISI 303

Query:   301 ENKKGD 306
             +    D
Sbjct:   304 DETSDD 309

GO:0009701 "isoflavonoid phytoalexin biosynthetic process" evidence=IDA

GO:0030746 "isoflavone 4'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 139/301 (46%), Positives = 200/301 (66%)

Query:     4 IDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTIN 63
             I+G   +E+ + QA ++ HI+ FI+SM LK  VEL IP+II+ HGKP T+++LVS L + 
Sbjct:     5 INGRKPSEIFQGQALLYRHIYAFIDSMCLKWIVELDIPNIIHNHGKPITVSELVSILKVP 64

Query:    64 PSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQ 123
              +K   V R+MR + H+GFF +  +   +   +E + Y LT AS+LL+K S L + P+++
Sbjct:    65 QTKAGNVQRIMRYMAHNGFFERVRIQEEQ---EENEAYALTAASELLVKGSELCLAPMVE 121

Query:   124 AVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLAT 183
              VLDP L   + +L  W   +D   F +  G  FWE+  + P+ N  FN+AMASD+++  
Sbjct:   122 CVLDPTLSGSYHQLKKWIYEEDLTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMIN 181

Query:   184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLK 243
              + +  C + FEG+ S+VDVGG  GT AK I   FPNL+C  FD P VV  L S   NL 
Sbjct:   182 -LALRDCNSGFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENL-SGTNNLS 239

Query:   244 YVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM-REN 302
             YVGGDMF+++P ADAV+LKWILH+W D +C +IL+KCKEA++S+ + GKVIII+M+  EN
Sbjct:   240 YVGGDMFQSVPKADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINEN 299

Query:   303 K 303
             +
Sbjct:   300 Q 300

GO:0009717 "isoflavonoid biosynthetic process" evidence=IDA

GO:0033800 "isoflavone 7-O-methyltransferase activity" evidence=IDA

UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 131/320 (40%), Positives = 195/320 (60%)

Query:     1 MNLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSAL 60
             M LI  D   ELL+A   +WN  ++F+ S++L  A++L I D I++ G   TL+ ++  +
Sbjct:     1 MVLISED-SRELLQAHVELWNQTYSFMKSVALAVALDLHIADAIHRRGGAATLSQILGEI 59

Query:    61 TINPSKTRCVYRLMRILIHSGFFA--QQTLNSSRNNND-EEQGYVLTNASKLLLKD---S 114
              + P K   ++R+MR+L  SG F   Q +  +  + +D  E  Y LT AS LL+     +
Sbjct:    60 GVRPCKLPGLHRIMRVLTVSGTFTIVQPSAETMSSESDGREPVYKLTTASSLLVSSESSA 119

Query:   115 PLSVTPLLQAVLDPILLSPW-LKLSTWFQSDD----PA--PFDMVHGKSFWEYAGDEPKI 167
               S++P+L  VL P   SP  + L+ WF+ D+    P   PF +++G + WE    +  I
Sbjct:   120 TASLSPMLNHVLSPFRDSPLSMGLTAWFRHDEDEQAPGMCPFTLMYGTTLWEVCRRDDAI 179

Query:   168 NNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFD 227
             N  FN AMA+D+    ++++ +   VF G++SLVDV G  G    AIA AFP L+CT  D
Sbjct:   180 NALFNNAMAADSNFLMQILLKEFSEVFLGIDSLVDVAGGVGGATMAIAAAFPCLKCTVLD 239

Query:   228 LPHVV-NGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITS 286
             LPHVV     S + N+++VGGDMFE+IPPA+ V+LKWILHDW+++EC+KILK CK+AI S
Sbjct:   240 LPHVVAKAPSSSIGNVQFVGGDMFESIPPANVVLLKWILHDWSNDECIKILKNCKQAIPS 299

Query:   287 NSKIGKVIIIDMMRENKKGD 306
                 GK+IIID++  +   D
Sbjct:   300 RDAGGKIIIIDVVVGSDSSD 319

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 122/303 (40%), Positives = 178/303 (58%)

Query:    11 ELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKH--GKPTTLNDLVSALTINPSKTR 68
             E  +A   +W ++F F +  + KCA++L IP+ I  H   +P TL +L SA++ +PS  R
Sbjct:    25 EEAKASLDIWKYVFGFADIAAAKCAIDLKIPEAIENHPSSQPVTLAELSSAVSASPSHLR 84

Query:    69 CVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL--KDSPLSVTPLLQAVL 126
                R+MR L+H G F +              GYV T  S+ L+  +    S+ P +    
Sbjct:    85 ---RIMRFLVHQGIFKEIPTKDGLAT-----GYVNTPLSRRLMITRRDGKSLAPFVLFET 136

Query:   127 DPILLSPWLKLSTWFQS----DDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLA 182
              P +L+PWL+LS+   S      P PFD VHGK  W +A D P +++  NEAMA DAR  
Sbjct:   137 TPEMLAPWLRLSSVVSSPVNGSTPPPFDAVHGKDVWSFAQDNPFLSDMINEAMACDARRV 196

Query:   183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANL 242
                V   C  +F+G+ ++VDVGG TG     + K FP ++  +FDLPHV+   E  L  +
Sbjct:   197 VPRVAGACHGLFDGVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPHVIEVAEV-LDGV 255

Query:   243 KYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID-MMRE 301
             + V GDMF++IP  DA+ +KW+LHDW D++C+KILK CKEA+  N  IGKV+I++ ++ E
Sbjct:   256 ENVEGDMFDSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPPN--IGKVLIVESVIGE 313

Query:   302 NKK 304
             NKK
Sbjct:   314 NKK 316

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
 Identities = 69/153 (45%), Positives = 100/153 (65%)

Query:   152 VHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVA 211
             +HGK  W +A D    +   NEAMA DAR     V   C+ +F+G+ ++VDVGG TG   
Sbjct:   109 LHGKDLWAFAQDNLCHSQLINEAMACDARRVVPRVAGACQGLFDGVATVVDVGGGTGETM 168

Query:   212 KAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDE 271
               + K FP ++  +FDLPHV+  +   L  ++ V GDMF++IP +DAV++KW+LHDW D+
Sbjct:   169 GILVKEFPWIKGFNFDLPHVIE-VAQVLDGVENVEGDMFDSIPASDAVIIKWVLHDWGDK 227

Query:   272 ECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304
             +C+KILK CKEA+  N  IGKV+I++ +   KK
Sbjct:   228 DCIKILKNCKEAVLPN--IGKVLIVECVIGEKK 258

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 97/270 (35%), Positives = 149/270 (55%)

Query:    30 MSLKCAVELSIPDIINKHGKPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTL 88
             M+LK A+EL + +I+ K+G P +  ++ S L T NP     + R++R+L  + +      
Sbjct:    34 MALKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVMLDRILRLL--TSYSVLTCS 91

Query:    89 NSSRNNNDEEQGYVLTNASKLLLKDSP-LSVTPLLQAVLDPILLSPWLKLSTWFQSDDPA 147
             N   + +  E+ Y L    K L K+   +S+  L     D +L+  W  L      D   
Sbjct:    92 NRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAIL-DGGI 150

Query:   148 PFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGAT 207
             PF+  +G S +EY G +P+ N  FN  M++ + +  + ++   K  FEGL SLVDVGG  
Sbjct:   151 PFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKG-FEGLTSLVDVGGGI 209

Query:   208 GTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHD 267
             G   K I   +PNL+  +FDLPHV+    S    +++VGGDMF ++P  DA+ +KWI HD
Sbjct:   210 GATLKMIVSKYPNLKGINFDLPHVIEDAPSH-PGIEHVGGDMFVSVPKGDAIFMKWICHD 268

Query:   268 WNDEECVKILKKCKEAITSNSKIGKVIIID 297
             W+DE CVK LK C E++  +   GKVI+ +
Sbjct:   269 WSDEHCVKFLKNCYESLPED---GKVILAE 295

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B0EXJ8	HTOMT_CATRO	2, ., 1, ., 1, ., 9, 4	0.5182	0.9413	0.8140	N/A	no
Q6VMW0	Q8OMT_MENPI	2, ., 1, ., 1, ., 8, 8	0.5369	0.9543	0.8005	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018662001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (357 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	3e-80
pfam08100	50	pfam08100, Dimerisation, Dimerisation domain	1e-16
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	4e-14
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	9e-04

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  242 bits (621), Expect = 3e-80
 Identities = 95/213 (44%), Positives = 133/213 (62%), Gaps = 7/213 (3%)

Query: 96  DEEQGYVLTNASKLLLKDSPL-SVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHG 154
              + Y LT ASKLL+K     S+ PLL    DP LL  W  L    +   P PF+   G
Sbjct: 2   RGGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGP-PFERAFG 60

Query: 155 KSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAI 214
             F+EY G +P+ N  FN AMA+ +RL  + ++ +    F GL+SLVDVGG TG +A AI
Sbjct: 61  MPFFEYLGADPEFNRVFNRAMAAHSRLVMKKIL-ETAFDFSGLSSLVDVGGGTGALAAAI 119

Query: 215 AKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECV 274
            +A+P+++   FDLPHV+    S    +++VGGD FE++P ADA++LKW+LHDW+DE+CV
Sbjct: 120 VRAYPHIKGIVFDLPHVIADAPS-ADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCV 178

Query: 275 KILKKCKEAITSNSKIGKVIIIDMMRENKKGDD 307
           KILK+C EA+      GKVI+++M+      DD
Sbjct: 179 KILKRCYEALPPG---GKVIVVEMVLPEDPDDD 208

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain

 Score = 72.2 bits (178), Expect = 1e-16
 Identities = 27/49 (55%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 30 MSLKCAVELSIPDIINKHGKPTTLNDLVSAL-TINPSKTRCVYRLMRIL 77
          M LKCA+EL IPDII KHGKP + ++L S L T+NP     + RL+R+L
Sbjct: 1  MVLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVMLDRLLRLL 49

This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 71.2 bits (174), Expect = 4e-14
 Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 16/161 (9%)

Query: 150 DMVHGK-SFWEYAGDEPKINN---FFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGG 205
             V G+ +F       P       +F E   S+A+ A ++++ + K   +G+  ++DVGG
Sbjct: 101 QAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGG 158

Query: 206 ATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA------NLKYVGGDMF-EAIPPADA 258
             G ++ A+ K FP L+ T  +LP  ++ +  + A       ++ +  D++ E+ P ADA
Sbjct: 159 GIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADA 218

Query: 259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299
           V+   IL+  N++    + KK  +A+ S    G+++I+DM+
Sbjct: 219 VLFCRILYSANEQLSTIMCKKAFDAMRSG---GRLLILDMV 256

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 37.7 bits (88), Expect = 9e-04
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 14/101 (13%)

Query: 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVV-----NGLESDLANLKYVGGDM--- 249
            ++D+G  TG++A  +A+ FP    T  DL P ++     N   +    + +V GD    
Sbjct: 4   RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDA 63

Query: 250 FEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKI 290
            + +   DAV +     D      +++L      +    ++
Sbjct: 64  LDLLEGFDAVFIGGGGGD-----LLELLDALASLLKPGGRL 99

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	100.0
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	100.0
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	100.0
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.65
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.62
PRK06922	677	hypothetical protein; Provisional	99.61
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.6
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.6
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.58
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.55
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.55
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.54
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.54
PRK11207	197	tellurite resistance protein TehB; Provisional	99.53
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.52
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.51
PLN02244	340	tocopherol O-methyltransferase	99.5
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.46
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.46
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.46
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.44
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.44
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.43
PLN02336	475	phosphoethanolamine N-methyltransferase	99.42
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.41
PLN02490	340	MPBQ/MSBQ methyltransferase	99.41
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.4
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.39
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.39
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.39
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.38
PRK08317	241	hypothetical protein; Provisional	99.38
PLN03075	296	nicotianamine synthase; Provisional	99.38
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.37
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.36
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.36
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.35
PRK12335	287	tellurite resistance protein TehB; Provisional	99.35
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.35
PRK06202	232	hypothetical protein; Provisional	99.35
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.34
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.33
PLN02336	475	phosphoethanolamine N-methyltransferase	99.33
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.33
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.32
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.31
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.31
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.31
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.29
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.28
PRK05785	226	hypothetical protein; Provisional	99.27
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.27
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.27
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.27
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.27
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.25
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.25
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.24
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.24
TIGR03438	301	probable methyltransferase. This model represents	99.22
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.22
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.19
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.18
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.17
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.16
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.12
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.11
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.1
PRK04266	226	fibrillarin; Provisional	99.1
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.08
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.07
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.05
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.04
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.03
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.03
PRK04457	262	spermidine synthase; Provisional	99.03
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.02
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.02
PRK07402	196	precorrin-6B methylase; Provisional	99.01
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.0
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.0
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.98
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.98
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.97
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.97
COG4123	248	Predicted O-methyltransferase [General function pr	98.94
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.94
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.93
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.9
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.89
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.89
PRK14968	188	putative methyltransferase; Provisional	98.89
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.88
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.87
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.87
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.86
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.85
PRK14967	223	putative methyltransferase; Provisional	98.85
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.85
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.84
KOG4300	252	consensus Predicted methyltransferase [General fun	98.84
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.84
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.83
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	98.83
PRK00811	283	spermidine synthase; Provisional	98.83
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.83
KOG2361	264	consensus Predicted methyltransferase [General fun	98.81
KOG2899	288	consensus Predicted methyltransferase [General fun	98.8
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.79
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.77
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.76
TIGR00438	188	rrmJ cell division protein FtsJ.	98.74
PHA03411	279	putative methyltransferase; Provisional	98.73
PTZ00146	293	fibrillarin; Provisional	98.72
PLN02366	308	spermidine synthase	98.72
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.71
KOG1271	227	consensus Methyltransferases [General function pre	98.69
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.69
KOG3010	261	consensus Methyltransferase [General function pred	98.68
PRK01581	374	speE spermidine synthase; Validated	98.68
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.67
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.66
COG2890	280	HemK Methylase of polypeptide chain release factor	98.62
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.62
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.61
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.58
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.58
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.57
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.55
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.54
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.53
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.53
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.52
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.52
PRK03612	521	spermidine synthase; Provisional	98.51
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.51
PHA03412	241	putative methyltransferase; Provisional	98.5
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.5
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.46
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.46
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.44
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.41
PLN02672	1082	methionine S-methyltransferase	98.39
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.39
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.39
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.39
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.39
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.37
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.37
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.36
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.34
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.34
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.33
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.33
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.29
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.28
PRK04148	134	hypothetical protein; Provisional	98.25
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.25
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.23
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.23
PLN02476	278	O-methyltransferase	98.23
COG4122	219	Predicted O-methyltransferase [General function pr	98.2
PLN02823	336	spermine synthase	98.2
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.19
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.19
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.15
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.15
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.15
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.14
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.13
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.13
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.12
PRK00536	262	speE spermidine synthase; Provisional	98.11
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.07
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.06
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.05
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.05
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.01
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.01
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.97
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.94
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.94
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.91
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.88
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.83
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.81
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.79
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.78
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.72
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.67
KOG2904	328	consensus Predicted methyltransferase [General fun	97.66
KOG1331	293	consensus Predicted methyltransferase [General fun	97.66
KOG3115	249	consensus Methyltransferase-like protein [General	97.58
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.53
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.51
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	97.46
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.43
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.43
KOG2940	325	consensus Predicted methyltransferase [General fun	97.42
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.37
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.33
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.32
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.31
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.3
PF13679	141	Methyltransf_32: Methyltransferase domain	97.3
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.3
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.29
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.25
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.24
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.2
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.18
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	97.15
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.15
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.11
COG4076	252	Predicted RNA methylase [General function predicti	97.1
COG3897	218	Predicted methyltransferase [General function pred	97.1
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.07
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.0
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.96
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	96.94
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	96.88
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	96.81
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.8
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	96.79
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	96.78
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	96.77
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	96.76
PRK10141	117	DNA-binding transcriptional repressor ArsR; Provis	96.69
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.64
COG1414	246	IclR Transcriptional regulator [Transcription]	96.64
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.61
PRK11569	274	transcriptional repressor IclR; Provisional	96.57
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	96.53
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	96.49
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	96.48
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.46
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.41
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	96.39
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	96.32
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	96.32
COG4301	321	Uncharacterized conserved protein [Function unknow	96.29
COG2521	287	Predicted archaeal methyltransferase [General func	96.28
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.26
PF01022	47	HTH_5: Bacterial regulatory protein, arsR family;	96.25
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	96.19
PF13463	68	HTH_27: Winged helix DNA-binding domain; PDB: 3GFL	96.17
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.16
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.12
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	96.09
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.06
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.03
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	95.95
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	95.89
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.89
PRK10857	164	DNA-binding transcriptional regulator IscR; Provis	95.88
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	95.83
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	95.82
COG2520	341	Predicted methyltransferase [General function pred	95.73
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	95.72
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	95.71
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	95.68
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	95.65
PF13601	80	HTH_34: Winged helix DNA-binding domain; PDB: 1UB9	95.6
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	95.56
TIGR02337	118	HpaR homoprotocatechuate degradation operon regula	95.44
TIGR02010	135	IscR iron-sulfur cluster assembly transcription fa	95.26
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	95.23
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.21
PRK03902	142	manganese transport transcriptional regulator; Pro	95.16
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	95.12
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.11
PF08461	66	HTH_12: Ribonuclease R winged-helix domain; InterP	95.05
COG4798	238	Predicted methyltransferase [General function pred	95.05
PHA00738	108	putative HTH transcription regulator	95.03
COG1959	150	Predicted transcriptional regulator [Transcription	95.02
COG1041	347	Predicted DNA modification methylase [DNA replicat	94.94
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	94.89
PRK03573	144	transcriptional regulator SlyA; Provisional	94.89
TIGR00738	132	rrf2_super rrf2 family protein (putative transcrip	94.86
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.82
KOG4058	199	consensus Uncharacterized conserved protein [Funct	94.77
KOG2730	263	consensus Methylase [General function prediction o	94.74
PF04967	53	HTH_10: HTH DNA binding domain; InterPro: IPR00705	94.74
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	94.7
PRK11050	152	manganese transport regulator MntR; Provisional	94.59
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	94.56
KOG3924	419	consensus Putative protein methyltransferase invol	94.53
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.53
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	94.43
COG1321	154	TroR Mn-dependent transcriptional regulator [Trans	94.34
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	94.3
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	94.29
PRK11512	144	DNA-binding transcriptional repressor MarR; Provis	94.28
TIGR02702	203	SufR_cyano iron-sulfur cluster biosynthesis transc	94.28
smart00347	101	HTH_MARR helix_turn_helix multiple antibiotic resi	94.26
COG2265	432	TrmA SAM-dependent methyltransferases related to t	94.23
PRK11920	153	rirA iron-responsive transcriptional regulator; Re	94.2
TIGR02944	130	suf_reg_Xantho FeS assembly SUF system regulator,	94.18
COG3315	297	O-Methyltransferase involved in polyketide biosynt	94.05
PF12802	62	MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP	93.99
COG2345	218	Predicted transcriptional regulator [Transcription	93.94
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	93.94
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	93.93
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	93.92
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	93.86
PF01726	65	LexA_DNA_bind: LexA DNA binding domain; InterPro:	93.82
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	93.69
PF01638	90	HxlR: HxlR-like helix-turn-helix; InterPro: IPR002	93.68
PRK11014	141	transcriptional repressor NsrR; Provisional	93.66
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	93.63
smart00529	96	HTH_DTXR Helix-turn-helix diphteria tox regulatory	93.55
COG3355	126	Predicted transcriptional regulator [Transcription	93.47
cd07377	66	WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi	93.42
TIGR01884	203	cas_HTH CRISPR locus-related DNA-binding protein.	93.33
cd00090	78	HTH_ARSR Arsenical Resistance Operon Repressor and	93.24
PF01047	59	MarR: MarR family; InterPro: IPR000835 The MarR-ty	93.23
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	93.14
smart00345	60	HTH_GNTR helix_turn_helix gluconate operon transcr	93.11
COG4742	260	Predicted transcriptional regulator [Transcription	93.05
TIGR01889	109	Staph_reg_Sar staphylococcal accessory regulator f	92.98
COG4190	144	Predicted transcriptional regulator [Transcription	92.92
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	92.89
COG0742	187	N6-adenine-specific methylase [DNA replication, re	92.84
PRK06474	178	hypothetical protein; Provisional	92.78
PRK06266	178	transcription initiation factor E subunit alpha; V	92.72
smart00420	53	HTH_DEOR helix_turn_helix, Deoxyribose operon repr	92.53
COG4189	308	Predicted transcriptional regulator [Transcription	92.52
PRK10870	176	transcriptional repressor MprA; Provisional	92.49
KOG2352	482	consensus Predicted spermine/spermidine synthase [	92.33
PLN02668	386	indole-3-acetate carboxyl methyltransferase	91.95
PRK10742	250	putative methyltransferase; Provisional	91.85
PF00325	32	Crp: Bacterial regulatory proteins, crp family; In	91.78
TIGR00122	69	birA_repr_reg BirA biotin operon repressor domain.	91.72
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	91.7
cd07153	116	Fur_like Ferric uptake regulator(Fur) and related	91.66
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	91.63
PF07381	90	DUF1495: Winged helix DNA-binding domain (DUF1495)	91.39
TIGR01610	95	phage_O_Nterm phage replication protein O, N-termi	91.19
PF01325	60	Fe_dep_repress: Iron dependent repressor, N-termin	91.17
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	91.16
COG3432	95	Predicted transcriptional regulator [Transcription	90.6
PRK14165	217	winged helix-turn-helix domain-containing protein/	90.49
PF03444	78	HrcA_DNA-bdg: Winged helix-turn-helix transcriptio	90.48
PF14394	171	DUF4423: Domain of unknown function (DUF4423)	90.31
smart00344	108	HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto	90.29
PRK15431	78	ferrous iron transport protein FeoC; Provisional	90.26
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	90.24
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	90.21
PRK04172	489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	89.46
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	89.38
PF13545	76	HTH_Crp_2: Crp-like helix-turn-helix domain; PDB:	89.35
PF10007	92	DUF2250: Uncharacterized protein conserved in arch	88.66
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	88.61
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	88.15
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	88.12
PRK13777	185	transcriptional regulator Hpr; Provisional	87.97
PHA02943	165	hypothetical protein; Provisional	87.85
COG1565	370	Uncharacterized conserved protein [Function unknow	87.68
COG5631	199	Predicted transcription regulator, contains HTH do	87.52
KOG1501	636	consensus Arginine N-methyltransferase [General fu	87.45
PF00392	64	GntR: Bacterial regulatory proteins, gntR family;	87.35
COG2512	258	Predicted membrane-associated trancriptional regul	87.19
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	87.15
COG1497	260	Predicted transcriptional regulator [Transcription	86.9
PF09904	90	HTH_43: Winged helix-turn helix; InterPro: IPR0171	86.22
PF12324	77	HTH_15: Helix-turn-helix domain of alkylmercury ly	85.98
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	85.96
PRK04214	412	rbn ribonuclease BN/unknown domain fusion protein;	85.74
COG1378	247	Predicted transcriptional regulators [Transcriptio	85.57
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	85.55
PLN02853	492	Probable phenylalanyl-tRNA synthetase alpha chain	85.47
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	85.44
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	85.2
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	85.08
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	85.06
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	85.06
PF07789	155	DUF1627: Protein of unknown function (DUF1627); In	84.72
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	84.65
TIGR02147	271	Fsuc_second hypothetical protein, TIGR02147. This	84.56
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	84.56
PRK11169	164	leucine-responsive transcriptional regulator; Prov	84.51
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	84.39
COG3413	215	Predicted DNA binding protein [General function pr	84.22
PRK11179	153	DNA-binding transcriptional regulator AsnC; Provis	83.96
COG1846	126	MarR Transcriptional regulators [Transcription]	83.96
PTZ00326	494	phenylalanyl-tRNA synthetase alpha chain; Provisio	83.92
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	83.67
COG4565	224	CitB Response regulator of citrate/malate metaboli	83.47
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	83.39
COG1568	354	Predicted methyltransferases [General function pre	83.13
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	82.91
PF05732	165	RepL: Firmicute plasmid replication protein (RepL)	82.86
PF02002	105	TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024	82.32
PF12793	115	SgrR_N: Sugar transport-related sRNA regulator N-t	82.22
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	82.11
PF13730	55	HTH_36: Helix-turn-helix domain	81.94
COG4519	95	Uncharacterized protein conserved in bacteria [Fun	81.88
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	81.74
COG1733	120	Predicted transcriptional regulators [Transcriptio	81.62
COG1510	177	Predicted transcriptional regulators [Transcriptio	81.51
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	81.51
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	81.43
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	81.31
PF09821	120	AAA_assoc_C: C-terminal AAA-associated domain; Int	81.15
PF04182	75	B-block_TFIIIC: B-block binding subunit of TFIIIC;	81.15
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	80.63
COG1522	154	Lrp Transcriptional regulators [Transcription]	80.28

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=100.00  E-value=4.5e-38  Score=279.03  Aligned_cols=273  Identities=32%  Similarity=0.553  Sum_probs=242.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcC--CCCCCcccHHHHHHHHHhCCceeeeccCCC
Q 037127           14 EAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALT--INPSKTRCVYRLMRILIHSGFFAQQTLNSS   91 (307)
Q Consensus        14 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g--~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~   91 (307)
                      ....+++++++++..+++|++|+||||||.|.+++ +  ..|||..+.  .+|.++..++|+||.|++.++++....   
T Consensus         5 ~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~-~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~---   78 (342)
T KOG3178|consen    5 EASLRAMRLANGFALPMVLKAACELGVFDILANAG-S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLV---   78 (342)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC-C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeee---
Confidence            45678899999999999999999999999999742 2  888888877  455578999999999999999999863   


Q ss_pred             CCCCCCCCeeecChhcchhhcCC-CCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHH
Q 037127           92 RNNNDEEQGYVLTNASKLLLKDS-PLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNF  170 (307)
Q Consensus        92 ~~~~~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~  170 (307)
                          +.+ .|++++.++++.+++ ..++.+++....+...++.|..+.++++.+. .+|..++|...++|...+......
T Consensus        79 ----~~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~  152 (342)
T KOG3178|consen   79 ----GGE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKD  152 (342)
T ss_pred             ----cce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHH
Confidence                123 899999999777443 3588888888888889999999999999998 589999998899999988888889


Q ss_pred             HHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCC
Q 037127          171 FNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMF  250 (307)
Q Consensus       171 f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~  250 (307)
                      |+++|...+......+++.+. ++++....||||||.|..+..++..||+++++.+|+|.+++.++...+.|+.+.+|+|
T Consensus       153 ~~~sm~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmf  231 (342)
T KOG3178|consen  153 FNGSMSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMF  231 (342)
T ss_pred             HHHHHHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccc
Confidence            999999888777777777776 4778899999999999999999999999999999999999999863267999999999


Q ss_pred             CCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          251 EAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       251 ~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ++.|..|+|++.||||||+|++|++||++|+++|+|   +|+|+|+|.+.|+
T Consensus       232 q~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~  280 (342)
T KOG3178|consen  232 QDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPE  280 (342)
T ss_pred             ccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCC
Confidence            999999999999999999999999999999999999   9999999999995

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=100.00  E-value=3.8e-37  Score=279.27  Aligned_cols=249  Identities=23%  Similarity=0.387  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127           27 INSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA  106 (307)
Q Consensus        27 ~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~  106 (307)
                      +.+.+|++|+++||||+|.+  +|.|++|||+++|+   +++.++|+|++|+++|+|++.           +++|++|+.
T Consensus         2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~-----------~~~y~~t~~   65 (306)
T TIGR02716         2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE-----------DGKWSLTEF   65 (306)
T ss_pred             chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEec-----------CCcEecchh
Confidence            35789999999999999986  79999999999999   689999999999999999986           489999999


Q ss_pred             cchhhcCCCC----ChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHHH-hchhh
Q 037127          107 SKLLLKDSPL----SVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMA-SDARL  181 (307)
Q Consensus       107 s~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~-~~~~~  181 (307)
                      ++.+..+.+.    ++.++..+. .......|..++++++++.  +|...     +.+....++. ..|...|. .....
T Consensus        66 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~~--~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~  136 (306)
T TIGR02716        66 ADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQK--NFKGQ-----VPYPPVTRED-NLYFEEIHRSNAKF  136 (306)
T ss_pred             HHhhccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcCCc--ccccc-----cCCCCCCHHH-HHhHHHHHHhcchh
Confidence            9965544322    111232222 1122356899999998533  34322     2222222223 33444444 33344


Q ss_pred             hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC
Q 037127          182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP  254 (307)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p  254 (307)
                      ..+.+++.++  +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++      ..+||+++++|+++ ++|
T Consensus       137 ~~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~  214 (306)
T TIGR02716       137 AIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP  214 (306)
T ss_pred             HHHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC
Confidence            4566666666  67788999999999999999999999999999999999988765      46799999999997 677


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG  305 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~  305 (307)
                      ++|+|++++++|+|+++++.++|++++++|+|   ||+++|.|.+++++..
T Consensus       215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~  262 (306)
T TIGR02716       215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPEN  262 (306)
T ss_pred             CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCC
Confidence            79999999999999999899999999999999   9999999999877654

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=100.00  E-value=2.1e-37  Score=271.77  Aligned_cols=202  Identities=36%  Similarity=0.725  Sum_probs=179.8

Q ss_pred             CCeeecChhcchhhcCCC-CChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHHH
Q 037127           98 EQGYVLTNASKLLLKDSP-LSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMA  176 (307)
Q Consensus        98 ~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~  176 (307)
                      +++|++|+.|+.|+.+.+ .++..++.++..+.++..|..|++++++++ ++|+..+|.++|+|+.++++..+.|..+|.
T Consensus         3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~   81 (241)
T PF00891_consen    3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA   81 (241)
T ss_dssp             TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred             CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence            589999999998776654 578888877667888999999999999998 789999999999999999999999999999


Q ss_pred             hchhhhH-HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCCCC
Q 037127          177 SDARLAT-RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPP  255 (307)
Q Consensus       177 ~~~~~~~-~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~p~  255 (307)
                      ..+.... ..+...++  +++.++|||||||+|.++..++++||+++++++|+|.|++.+++ .+||++++||+++++|.
T Consensus        82 ~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-~~rv~~~~gd~f~~~P~  158 (241)
T PF00891_consen   82 EYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-ADRVEFVPGDFFDPLPV  158 (241)
T ss_dssp             HHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-TTTEEEEES-TTTCCSS
T ss_pred             hhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-ccccccccccHHhhhcc
Confidence            9887776 77778888  78889999999999999999999999999999999999999996 99999999999998999


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCC--cEEEEEeeecCCCCCC
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKI--GKVIIIDMMRENKKGD  306 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~g--g~lli~e~~~~~~~~~  306 (307)
                      +|+|++++|||+|++++|++||++++++|+|   |  |+|+|+|+++++++..
T Consensus       159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~  208 (241)
T PF00891_consen  159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTG  208 (241)
T ss_dssp             ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSS
T ss_pred             ccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCC
Confidence            9999999999999999999999999999998   8  9999999999998753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.65  E-value=1.8e-15  Score=116.49  Aligned_cols=98  Identities=23%  Similarity=0.432  Sum_probs=84.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCC-CC-C-CCCccEEEech-hh
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDM-FE-A-IPPADAVVLKW-IL  265 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~-~~-~-~p~~D~i~~~~-vL  265 (307)
                      ..+|||||||+|.++..+++.+|+.+++++|. |.+++.+++      ..+||+++++|+ .. + .+.||+|++.. .+
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~   81 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL   81 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence            56899999999999999999999999999999 889988877      478999999999 33 2 33699999999 67


Q ss_pred             ccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          266 HDWND-EECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       266 h~~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      |++.. ++..++|+++++.|+|   ||+++|.+
T Consensus        82 ~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~  111 (112)
T PF12847_consen   82 HFLLPLDERRRVLERIRRLLKP---GGRLVINT  111 (112)
T ss_dssp             GGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence            75443 5778999999999999   88888865

...

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.62  E-value=5.9e-15  Score=127.42  Aligned_cols=105  Identities=22%  Similarity=0.381  Sum_probs=94.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEechhh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKWIL  265 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vL  265 (307)
                      .++.+|||||||||-++..+++..+..+++++|. +.|++.+++     ....|+|+.+|+.+ |+|  .||++.++..|
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl  129 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL  129 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence            3678999999999999999999999999999999 899999987     11239999999999 888  49999999999


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~  304 (307)
                      +++++.+  +.|++++|+|||   ||+++++|...|+..
T Consensus       130 rnv~d~~--~aL~E~~RVlKp---gG~~~vle~~~p~~~  163 (238)
T COG2226         130 RNVTDID--KALKEMYRVLKP---GGRLLVLEFSKPDNP  163 (238)
T ss_pred             hcCCCHH--HHHHHHHHhhcC---CeEEEEEEcCCCCch
Confidence            9999875  889999999999   999999999887653

>PRK06922 hypothetical protein; Provisional

Probab=99.61  E-value=9.8e-15  Score=140.86  Aligned_cols=145  Identities=19%  Similarity=0.281  Sum_probs=111.3

Q ss_pred             CCccccccCCcHHHHHHHHHHHhchhhh--HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHH
Q 037127          155 KSFWEYAGDEPKINNFFNEAMASDARLA--TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHV  231 (307)
Q Consensus       155 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~  231 (307)
                      ..+|+++...++..++|...|.......  .......++  +.+..+|||||||+|.++..+++.+|+.+++++|+ +.+
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M  454 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV  454 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence            3567888888888888876665432111  111122233  34567999999999999999999999999999999 778


Q ss_pred             HHhchh----cCCCeEEEecCCCC-C--CC--CccEEEechhhccC-----------ChhHHHHHHHHHHHhccCCCCCc
Q 037127          232 VNGLES----DLANLKYVGGDMFE-A--IP--PADAVVLKWILHDW-----------NDEECVKILKKCKEAITSNSKIG  291 (307)
Q Consensus       232 ~~~a~~----~~~rv~~~~~d~~~-~--~p--~~D~i~~~~vLh~~-----------~~~~~~~~L~~~~~~L~p~~~gg  291 (307)
                      ++.+++    ...+++++++|+.+ +  ++  .+|+|+++.++|+|           +.++..++|++++++|+|   ||
T Consensus       455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GG  531 (677)
T PRK06922        455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GG  531 (677)
T ss_pred             HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---Cc
Confidence            888875    23578889999876 2  33  49999999999976           345778999999999999   99


Q ss_pred             EEEEEeeecCCCC
Q 037127          292 KVIIIDMMRENKK  304 (307)
Q Consensus       292 ~lli~e~~~~~~~  304 (307)
                      +++|.|.++++++
T Consensus       532 rLII~D~v~~E~~  544 (677)
T PRK06922        532 RIIIRDGIMTEDK  544 (677)
T ss_pred             EEEEEeCccCCch
Confidence            9999998877654

>TIGR00740 methyltransferase, putative

Probab=99.60  E-value=8.4e-15  Score=128.30  Aligned_cols=106  Identities=18%  Similarity=0.287  Sum_probs=93.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHC--CCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCCCccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAF--PNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~i~~~~v  264 (307)
                      .+..+|||||||+|.++..+++.+  |+.+++++|+ +.+++.|++      ...+++++.+|+.+ +.+.+|++++..+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~  131 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  131 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence            355689999999999999999974  7899999999 889988876      24589999999988 5667999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      +|++++++...+|++++++|+|   ||++++.|.+.+++
T Consensus       132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~  167 (239)
T TIGR00740       132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFED  167 (239)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCC
Confidence            9999988788999999999999   99999999877653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.60  E-value=8.8e-15  Score=128.81  Aligned_cols=106  Identities=18%  Similarity=0.283  Sum_probs=92.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHH--HCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCCCccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAK--AFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~--~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~i~~~~v  264 (307)
                      ....+|||||||+|..+..+++  .+|+.+++++|. +.+++.+++      ...+++++++|+.+ +.+.+|++++..+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~  134 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  134 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence            4567899999999999999988  468999999999 899999876      24589999999987 5567999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      +|++++++...++++++++|+|   ||.+++.|.+..++
T Consensus       135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~  170 (247)
T PRK15451        135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFED  170 (247)
T ss_pred             HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCc
Confidence            9999887778999999999999   99999999776553

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.58  E-value=1.1e-14  Score=126.62  Aligned_cols=105  Identities=24%  Similarity=0.477  Sum_probs=80.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~  263 (307)
                      ...+.+|||||||+|..+..+++.. |+.+++++|. +.|++.+++     ...+|+++++|..+ |+|  .+|+++++.
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            4557799999999999999999875 5689999999 899999986     34599999999998 777  399999999


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      .||+++|.+  +.|++++++|||   ||+++|+|...|+.
T Consensus       125 glrn~~d~~--~~l~E~~RVLkP---GG~l~ile~~~p~~  159 (233)
T PF01209_consen  125 GLRNFPDRE--RALREMYRVLKP---GGRLVILEFSKPRN  159 (233)
T ss_dssp             -GGG-SSHH--HHHHHHHHHEEE---EEEEEEEEEEB-SS
T ss_pred             hHHhhCCHH--HHHHHHHHHcCC---CeEEEEeeccCCCC
Confidence            999999864  789999999999   99999999988764

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.55  E-value=9.8e-14  Score=123.17  Aligned_cols=114  Identities=17%  Similarity=0.327  Sum_probs=95.9

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC--C
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP--P  255 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p--~  255 (307)
                      ...++..+.  +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++   ..++++++++|+.+ ++|  .
T Consensus        41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~  117 (263)
T PTZ00098         41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT  117 (263)
T ss_pred             HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence            355666665  6777899999999999999998876 579999999 788888876   34689999999987 565  4


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ||+|++..++++++.++..++|++++++|+|   ||+++|.|....+
T Consensus       118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~  161 (263)
T PTZ00098        118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADK  161 (263)
T ss_pred             eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccc
Confidence            9999999998888866678999999999999   9999999987654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.55  E-value=7.9e-14  Score=123.32  Aligned_cols=105  Identities=17%  Similarity=0.256  Sum_probs=89.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCC--CCccEEE
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAI--PPADAVV  260 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~--p~~D~i~  260 (307)
                      ..++..+.  .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++  .+++++.+|+.+..  +.||+|+
T Consensus        19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--~~~~~~~~d~~~~~~~~~fD~v~   94 (255)
T PRK14103         19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--RGVDARTGDVRDWKPKPDTDVVV   94 (255)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--cCCcEEEcChhhCCCCCCceEEE
Confidence            45666665  56678999999999999999999999999999999 889988873  46889999987632  3599999


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ++.++|++++.  .++|++++++|+|   ||+++|..
T Consensus        95 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~  126 (255)
T PRK14103         95 SNAALQWVPEH--ADLLVRWVDELAP---GSWIAVQV  126 (255)
T ss_pred             EehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEc
Confidence            99999998875  5889999999999   99998863

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.54  E-value=1.4e-13  Score=121.97  Aligned_cols=104  Identities=15%  Similarity=0.254  Sum_probs=89.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh--------cCCCeEEEecCCCC-CCC--CccEEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES--------DLANLKYVGGDMFE-AIP--PADAVV  260 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~-~~p--~~D~i~  260 (307)
                      ..+..+|||||||+|.++..+++.+ |+.+++++|+ +.|++.|++        ..++++++++|+.+ |++  .||+|+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            3456799999999999999999875 6679999999 889988864        13589999999987 666  399999


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +..++|++++.  .++|++++++|+|   ||+++|+|...++
T Consensus       151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~  187 (261)
T PLN02233        151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKST  187 (261)
T ss_pred             EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCC
Confidence            99999999876  4889999999999   9999999987654

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.54  E-value=8.8e-14  Score=113.31  Aligned_cols=99  Identities=23%  Similarity=0.409  Sum_probs=86.6

Q ss_pred             CCCeEEEecCCchHHHHHHH-HHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC-CccEEEechh
Q 037127          196 GLNSLVDVGGATGTVAKAIA-KAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP-PADAVVLKWI  264 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p-~~D~i~~~~v  264 (307)
                      +..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.+++     ..++++|..+|+.+ +  ++ .||+|++..+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~   82 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV   82 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence            46789999999999999999 5688999999999 889999886     34589999999999 4  33 6999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +|++++.+  .+|+++++.|++   +|.+++.+..
T Consensus        83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~  112 (152)
T PF13847_consen   83 LHHFPDPE--KVLKNIIRLLKP---GGILIISDPN  112 (152)
T ss_dssp             GGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEE
T ss_pred             hhhccCHH--HHHHHHHHHcCC---CcEEEEEECC
Confidence            99999874  889999999999   8999988876

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.53  E-value=1.4e-13  Score=116.99  Aligned_cols=112  Identities=18%  Similarity=0.235  Sum_probs=91.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC-C
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP-P  255 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p-~  255 (307)
                      +.+++.+.  .....+|||+|||+|..+..|+++  +.+++++|+ +.+++.+++     ...++++...|+.+ +.+ .
T Consensus        20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (197)
T PRK11207         20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE   95 (197)
T ss_pred             HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence            44555555  445679999999999999999986  568999999 778888775     23568899999876 344 5


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ||+|++..++|++++++...++++++++|+|   ||++++++.+-++
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~  139 (197)
T PRK11207         96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTA  139 (197)
T ss_pred             cCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCC
Confidence            9999999999998888889999999999999   9998877765443

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.52  E-value=2.5e-13  Score=120.33  Aligned_cols=107  Identities=18%  Similarity=0.314  Sum_probs=91.2

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccEE
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADAV  259 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~i  259 (307)
                      ...++..+.  ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++..++++|+.+|+.+..+  .+|+|
T Consensus        20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v   97 (258)
T PRK01683         20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI   97 (258)
T ss_pred             HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence            355666665  56678999999999999999999999999999999 88898888755679999999876322  59999


Q ss_pred             EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +++.++|+.++.  .++|++++++|+|   ||++++.
T Consensus        98 ~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~  129 (258)
T PRK01683         98 FANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQ  129 (258)
T ss_pred             EEccChhhCCCH--HHHHHHHHHhcCC---CcEEEEE
Confidence            999999988775  4899999999999   8988875

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.51  E-value=1.4e-13  Score=102.15  Aligned_cols=89  Identities=24%  Similarity=0.390  Sum_probs=76.8

Q ss_pred             EEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC--CccEEEechhhccCChhHHH
Q 037127          201 VDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEECV  274 (307)
Q Consensus       201 lDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~~~  274 (307)
                      ||||||+|.++..+++. +..+++++|. +.+++.+++  ...++++..+|+.+ ++|  .+|+|++.+++|++++  ..
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~   77 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PE   77 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HH
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HH
Confidence            79999999999999998 8889999999 778888887  56678899999988 666  4999999999999944  46


Q ss_pred             HHHHHHHHhccCCCCCcEEEE
Q 037127          275 KILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       275 ~~L~~~~~~L~p~~~gg~lli  295 (307)
                      +++++++++|||   ||+++|
T Consensus        78 ~~l~e~~rvLk~---gG~l~~   95 (95)
T PF08241_consen   78 AALREIYRVLKP---GGRLVI   95 (95)
T ss_dssp             HHHHHHHHHEEE---EEEEEE
T ss_pred             HHHHHHHHHcCc---CeEEeC
Confidence            999999999999   898876

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02244 tocopherol O-methyltransferase

Probab=99.50  E-value=3.8e-13  Score=123.74  Aligned_cols=100  Identities=16%  Similarity=0.221  Sum_probs=86.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~v  264 (307)
                      ....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++|+.+|+.+ +++  .||+|++..+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~  195 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES  195 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence            456799999999999999999988 679999999 778877765      34689999999987 555  4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      +|++++.  .+++++++++|+|   ||+++|.+...
T Consensus       196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~  226 (340)
T PLN02244        196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCH  226 (340)
T ss_pred             hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecc
Confidence            9999886  4899999999999   99999988654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.46  E-value=8.4e-13  Score=114.92  Aligned_cols=110  Identities=20%  Similarity=0.294  Sum_probs=90.9

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--  254 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--  254 (307)
                      .++..+.  .....+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++     ..++++++.+|+.+ +++  
T Consensus        36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (231)
T TIGR02752        36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN  113 (231)
T ss_pred             HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence            3444444  5567899999999999999999886 6789999999 788887775     34689999999987 444  


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      .+|+|++..++|++++.  .++|+++.++|+|   ||++++++...+
T Consensus       114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~  155 (231)
T TIGR02752       114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQP  155 (231)
T ss_pred             CccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCC
Confidence            49999999999988876  4899999999999   999999887543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.46  E-value=8.6e-13  Score=112.00  Aligned_cols=111  Identities=14%  Similarity=0.149  Sum_probs=87.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~  256 (307)
                      ..+++.+.  .....+|||+|||+|..+..++++  +.+++++|+ +.+++.+++    ..-++++...|+.. +.+ .+
T Consensus        20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f   95 (195)
T TIGR00477        20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY   95 (195)
T ss_pred             HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence            44555554  344679999999999999999986  578999999 778887765    12237788888765 333 59


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      |+|++..++|+++.++...++++++++|+|   ||+++|++....
T Consensus        96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~  137 (195)
T TIGR00477        96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDT  137 (195)
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEeccc
Confidence            999999999999887788999999999999   999888876543

Part of a tellurite-reducing operon tehA and tehB

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.46  E-value=7.5e-13  Score=113.01  Aligned_cols=103  Identities=16%  Similarity=0.268  Sum_probs=88.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccEEEechhhccCChh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADAVVLKWILHDWNDE  271 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~~~~~  271 (307)
                      .+..+|||||||+|.++..+++..|+.+++++|+ +.+++.|++..+++++..+|+.++++  .||+|++..+||+++++
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~  121 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD  121 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence            4567899999999999999999889999999999 88999998644678899999988655  49999999999999887


Q ss_pred             HHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          272 ECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       272 ~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +..+++++++++++     +.++|.|...+.
T Consensus       122 ~~~~~l~el~r~~~-----~~v~i~e~~~~~  147 (204)
T TIGR03587       122 NLPTAYRELYRCSN-----RYILIAEYYNPS  147 (204)
T ss_pred             HHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence            78899999999874     688888876543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.44  E-value=9.5e-13  Score=114.07  Aligned_cols=98  Identities=15%  Similarity=0.289  Sum_probs=85.5

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhccC
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILHDW  268 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~  268 (307)
                      ++|||||||+|.++..+++.+|+.+++++|+ +.+++.+++      ..++++++..|+.+ +.+ .||+|++..++|++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            4799999999999999999999999999999 777777765      45789999999976 444 49999999999999


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ++.  ..+|++++++|+|   ||++++.++..
T Consensus        81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~  107 (224)
T smart00828       81 KDK--MDLFSNISRHLKD---GGHLVLADFIA  107 (224)
T ss_pred             CCH--HHHHHHHHHHcCC---CCEEEEEEccc
Confidence            875  5899999999999   99999998753

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.44  E-value=6.4e-13  Score=100.56  Aligned_cols=89  Identities=26%  Similarity=0.448  Sum_probs=74.3

Q ss_pred             EEEecCCchHHHHHHHHHC---CCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CC--CCccEEEec-hhhcc
Q 037127          200 LVDVGGATGTVAKAIAKAF---PNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AI--PPADAVVLK-WILHD  267 (307)
Q Consensus       200 vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~--p~~D~i~~~-~vLh~  267 (307)
                      |||+|||+|..+..+++.+   |..+++++|+ +.+++.+++    ...+++|++.|+.+ ++  ..+|+|++. .++|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999999999987   5689999999 889998887    23589999999988 32  259999995 55999


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCc
Q 037127          268 WNDEECVKILKKCKEAITSNSKIG  291 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg  291 (307)
                      +++++..++|+++++.++|   ||
T Consensus        81 ~~~~~~~~ll~~~~~~l~p---gG  101 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRP---GG  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEE---EE
T ss_pred             CCHHHHHHHHHHHHHHhCC---CC
Confidence            9999999999999999998   65

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.43  E-value=1.6e-12  Score=115.44  Aligned_cols=100  Identities=15%  Similarity=0.265  Sum_probs=83.2

Q ss_pred             cCCCeEEEecCCchH----HHHHHHHHCC-----CCeEEEecc-hHHHHhchh-c-------------------------
Q 037127          195 EGLNSLVDVGGATGT----VAKAIAKAFP-----NLECTDFDL-PHVVNGLES-D-------------------------  238 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~----~~~~l~~~~p-----~~~~~~~Dl-~~~~~~a~~-~-------------------------  238 (307)
                      .+..+|+|+|||+|.    ++..+++.+|     +.++++.|+ +.+++.|++ .                         
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345799999999996    4566666655     578999999 889998876 1                         


Q ss_pred             ------CCCeEEEecCCCCC-CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          239 ------LANLKYVGGDMFEA-IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       239 ------~~rv~~~~~d~~~~-~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                            ..+|+|..+|+.++ .|  .+|+|+|+++||++++++..+++++++++|+|   ||.++|-.
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~  242 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH  242 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence                  14799999999984 33  49999999999999988888999999999999   89988754

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.42  E-value=2.4e-12  Score=123.80  Aligned_cols=111  Identities=17%  Similarity=0.249  Sum_probs=92.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--C
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--P  255 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~  255 (307)
                      ..+++.+.  ..+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.|++    ...+++|+.+|+.+ ++|  .
T Consensus       256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~  332 (475)
T PLN02336        256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS  332 (475)
T ss_pred             HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence            34555554  4567799999999999999999877 679999999 788888765    35689999999987 455  4


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ||+|++..+++++++.  .++|++++++|+|   ||+++|.+....+
T Consensus       333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~  374 (475)
T PLN02336        333 FDVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLISDYCRSP  374 (475)
T ss_pred             EEEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEEEeccCC
Confidence            9999999999999876  4899999999999   9999999887653

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.41  E-value=5e-14  Score=106.15  Aligned_cols=88  Identities=24%  Similarity=0.419  Sum_probs=59.4

Q ss_pred             EEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCC---CeEEEecCCCCCCC--CccEEEechhhccCC
Q 037127          201 VDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLA---NLKYVGGDMFEAIP--PADAVVLKWILHDWN  269 (307)
Q Consensus       201 lDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~---rv~~~~~d~~~~~p--~~D~i~~~~vLh~~~  269 (307)
                      ||||||+|.++..+++.+|..+++++|+ +.+++.+++     ...   ++++...+..+..+  .||+|++.+++|+++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            7999999999999999999999999999 888877766     122   34555555555333  699999999999995


Q ss_pred             hhHHHHHHHHHHHhccCCCCCcEE
Q 037127          270 DEECVKILKKCKEAITSNSKIGKV  293 (307)
Q Consensus       270 ~~~~~~~L~~~~~~L~p~~~gg~l  293 (307)
                      +  ...+|+++++.|+|   ||++
T Consensus        81 ~--~~~~l~~~~~~L~p---gG~l   99 (99)
T PF08242_consen   81 D--IEAVLRNIYRLLKP---GGIL   99 (99)
T ss_dssp             ---HHHHHHHHTTT-TS---S-EE
T ss_pred             h--HHHHHHHHHHHcCC---CCCC
Confidence            4  45999999999999   8875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.41  E-value=2.4e-12  Score=117.28  Aligned_cols=101  Identities=27%  Similarity=0.349  Sum_probs=87.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC--CccEEEechhhccCC
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWN  269 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~  269 (307)
                      ...+|||||||+|.++..+++.++..+++++|. +.+++.+++  ...+++++.+|+.+ +++  .||+|++..++|+|+
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~  192 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP  192 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence            457999999999999999999988889999999 888888876  34679999999987 554  499999999999999


Q ss_pred             hhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          270 DEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       270 ~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +.+  ++|++++++|+|   ||+++|++.+.+
T Consensus       193 d~~--~~L~e~~rvLkP---GG~LvIi~~~~p  219 (340)
T PLN02490        193 DPQ--RGIKEAYRVLKI---GGKACLIGPVHP  219 (340)
T ss_pred             CHH--HHHHHHHHhcCC---CcEEEEEEecCc
Confidence            875  789999999999   999999887654

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.40  E-value=1.9e-12  Score=107.88  Aligned_cols=113  Identities=19%  Similarity=0.321  Sum_probs=97.1

Q ss_pred             hchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC-
Q 037127          177 SDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP-  254 (307)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p-  254 (307)
                      .-+++. ..++..++  .....+|+|+|||+|..+..|++++|+..++++|. +.|++.|+.....++|..+|+.+-.| 
T Consensus        14 eRtRPa-~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~   90 (257)
T COG4106          14 ERTRPA-RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE   90 (257)
T ss_pred             hccCcH-HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC
Confidence            334443 56777787  77888999999999999999999999999999999 89999998778889999999988444 


Q ss_pred             -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                       ..|+++.+-+||-.+|.  .++|.++...|.|   ||.+.+.=
T Consensus        91 ~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQm  129 (257)
T COG4106          91 QPTDLLFANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQM  129 (257)
T ss_pred             Cccchhhhhhhhhhcccc--HHHHHHHHHhhCC---CceEEEEC
Confidence             69999999999977775  6999999999999   88887753

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.39  E-value=4.3e-12  Score=115.73  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=81.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILH  266 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh  266 (307)
                      ..++|||||||+|.++..+++..+. +++++|. +.++..++.      ...++.|+.+|+.+ +.+ .||+|++..++|
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~  200 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY  200 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence            4579999999999999999998765 5999998 545544322      24589999999877 444 499999999999


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      ++.+.  ..+|++++++|+|   ||++++-+.+.+.+
T Consensus       201 H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~  232 (322)
T PRK15068        201 HRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGD  232 (322)
T ss_pred             ccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCC
Confidence            98876  4789999999999   89998766655543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.39  E-value=3.4e-12  Score=112.92  Aligned_cols=98  Identities=15%  Similarity=0.222  Sum_probs=82.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC--CCC--CccEEEech
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--AIP--PADAVVLKW  263 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~~p--~~D~i~~~~  263 (307)
                      .+..+|||||||+|.++..+++.  +.+++++|+ +.+++.|++      ..++++++++|+.+  +.+  .||+|++..
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~  120 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA  120 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence            45679999999999999999987  568999999 889988876      24689999999865  233  499999999


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      ++|++++..  .+|++++++|+|   ||+++|+...
T Consensus       121 vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~n  151 (255)
T PRK11036        121 VLEWVADPK--SVLQTLWSVLRP---GGALSLMFYN  151 (255)
T ss_pred             HHHhhCCHH--HHHHHHHHHcCC---CeEEEEEEEC
Confidence            999998764  889999999999   9999887543

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.39  E-value=4.5e-12  Score=108.21  Aligned_cols=103  Identities=18%  Similarity=0.307  Sum_probs=90.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCC------CeEEEecc-hHHHHhchh--------cCCCeEEEecCCCC-CCC--Cc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPN------LECTDFDL-PHVVNGLES--------DLANLKYVGGDMFE-AIP--PA  256 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~------~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~-~~p--~~  256 (307)
                      ....++|||+||||-.+..+++.-+.      .++++.|+ |++++.+++        ...|+.++++|..+ |+|  .+
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~  178 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF  178 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence            34589999999999999999998887      78999999 999988765        24569999999998 888  49


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      |+|.++.-+-+|++.+  +.|++++++|||   ||++.++|+---+
T Consensus       179 D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~  219 (296)
T KOG1540|consen  179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVE  219 (296)
T ss_pred             eeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccc
Confidence            9999999999999874  899999999999   9999999875433

>TIGR00452 methyltransferase, putative

Probab=99.38  E-value=6.2e-12  Score=113.72  Aligned_cols=110  Identities=13%  Similarity=0.084  Sum_probs=85.4

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-C-CCC
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-A-IPP  255 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~-~p~  255 (307)
                      .++..+.  ....++|||||||+|.++..++...+. +++++|. +.++.+++.      ...++.+...++.+ + ...
T Consensus       112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~  188 (314)
T TIGR00452       112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA  188 (314)
T ss_pred             HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence            3455444  344679999999999999999988664 7999998 556654332      34688888888765 2 236


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ||+|++..+||++++.  ...|++++++|+|   ||.+++.+.+.+.
T Consensus       189 FD~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g  230 (314)
T TIGR00452       189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDG  230 (314)
T ss_pred             cCEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecC
Confidence            9999999999999876  4789999999999   9999988776543

Known examples to date are restricted to the proteobacteria.

>PRK08317 hypothetical protein; Provisional

Probab=99.38  E-value=9e-12  Score=108.41  Aligned_cols=107  Identities=21%  Similarity=0.308  Sum_probs=89.6

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--Cc
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PA  256 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~  256 (307)
                      +.+.+.  ..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++    ...++++...|+.+ +++  .+
T Consensus        11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~   88 (241)
T PRK08317         11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF   88 (241)
T ss_pred             HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence            344444  5667899999999999999999988 7889999999 777777765    35679999999876 444  59


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      |+|++.+++|++++.  ..++++++++|+|   ||++++.++.
T Consensus        89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~  126 (241)
T PRK08317         89 DAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTD  126 (241)
T ss_pred             eEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecC
Confidence            999999999999886  4789999999999   9999998864

>PLN03075 nicotianamine synthase; Provisional

Probab=99.38  E-value=4.6e-12  Score=112.68  Aligned_cols=98  Identities=15%  Similarity=0.217  Sum_probs=80.6

Q ss_pred             cCCCeEEEecCCchHHHH-H-HHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCCCC---CCccEEEe
Q 037127          195 EGLNSLVDVGGATGTVAK-A-IAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEAI---PPADAVVL  261 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~-~-l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~~---p~~D~i~~  261 (307)
                      .++++|+|||||.|.++. . +++.+|+.+++++|. +++++.|++       ..+|++|+.+|..+..   .+||+|++
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence            367899999999884433 3 346789999999999 888888877       3578999999998732   36999999


Q ss_pred             chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      . +||+|+.++-.++|++++++|+|   ||.+++-
T Consensus       202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr  232 (296)
T PLN03075        202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLR  232 (296)
T ss_pred             e-cccccccccHHHHHHHHHHhcCC---CcEEEEe
Confidence            9 99999766668999999999999   7877764

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.37  E-value=7.4e-12  Score=109.03  Aligned_cols=99  Identities=20%  Similarity=0.304  Sum_probs=84.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND  270 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~  270 (307)
                      ...+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+  .||+|++.+++|+.++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~  113 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD  113 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence            357899999999999999999999999999999 777777776 45689999999987 434  4999999999998766


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          271 EECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .  ..+|++++++|+|   ||.+++.++.
T Consensus       114 ~--~~~l~~~~~~L~~---~G~l~~~~~~  137 (240)
T TIGR02072       114 L--SQALSELARVLKP---GGLLAFSTFG  137 (240)
T ss_pred             H--HHHHHHHHHHcCC---CcEEEEEeCC
Confidence            5  4899999999999   8999987653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.36  E-value=8.3e-12  Score=111.02  Aligned_cols=113  Identities=12%  Similarity=0.131  Sum_probs=87.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~  256 (307)
                      +.+++.+.  +.++.+|||||||-|.++..+++++ +++++++.+ +...+.+++      ..+++++...|+.+-.+.|
T Consensus        52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f  128 (273)
T PF02353_consen   52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF  128 (273)
T ss_dssp             HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred             HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence            55677776  7888999999999999999999999 799999999 666666654      5689999999998733379


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      |.|++...+.++..+.-..+++++.+.|+|   ||++++...+.++
T Consensus       129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~  171 (273)
T PF02353_consen  129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRD  171 (273)
T ss_dssp             SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--
T ss_pred             CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEeccccc
Confidence            999999999999888778999999999999   9999987776654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.36  E-value=1.4e-11  Score=108.63  Aligned_cols=108  Identities=14%  Similarity=0.200  Sum_probs=85.1

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccE
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADA  258 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~  258 (307)
                      +..+++.+.  .....+|||+|||+|.++..+.+.  +.+++++|+ +.+++.+++....+.++++|+.+ +++  .||+
T Consensus        31 a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~  106 (251)
T PRK10258         31 ADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL  106 (251)
T ss_pred             HHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence            344555554  335678999999999999988875  578999999 88998888633446788999977 554  4999


Q ss_pred             EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      |+++.++|..++.  ..+|++++++|+|   ||.+++....
T Consensus       107 V~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~  142 (251)
T PRK10258        107 AWSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLV  142 (251)
T ss_pred             EEECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCC
Confidence            9999999866654  5899999999999   8999887543

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.35  E-value=1.4e-11  Score=108.48  Aligned_cols=116  Identities=16%  Similarity=0.188  Sum_probs=101.8

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCC
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPP  255 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~  255 (307)
                      .+.+++++.  +.++.+|||||||-|.+++..+++| +++++++++ +++.+.+++      ...+|++.-.|+.+..+.
T Consensus        61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~  137 (283)
T COG2230          61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP  137 (283)
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence            356677777  8899999999999999999999999 899999999 677777665      456899999999885445


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~  304 (307)
                      ||-|+....++++..+.-..+++++++.|+|   ||++++.....+++.
T Consensus       138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~  183 (283)
T COG2230         138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQE  183 (283)
T ss_pred             cceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCcc
Confidence            9999999999999998888999999999999   999999988887754

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.35  E-value=1.1e-11  Score=111.64  Aligned_cols=101  Identities=21%  Similarity=0.226  Sum_probs=84.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC-CC-CccEEEechhhccC
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA-IP-PADAVVLKWILHDW  268 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~-~p-~~D~i~~~~vLh~~  268 (307)
                      ...+|||||||+|..+..+++.  +.+++++|. +.+++.+++    ..-++++...|+... .+ .||+|++..++|+.
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l  197 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL  197 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence            4569999999999999999986  579999999 777887765    223788888998763 34 59999999999999


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      ++++...+++++.++|+|   ||++++++..-.
T Consensus       198 ~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~  227 (287)
T PRK12335        198 NRERIPAIIKNMQEHTNP---GGYNLIVCAMDT  227 (287)
T ss_pred             CHHHHHHHHHHHHHhcCC---CcEEEEEEeccc
Confidence            888888999999999999   999888765543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.35  E-value=4.1e-12  Score=115.33  Aligned_cols=96  Identities=15%  Similarity=0.159  Sum_probs=81.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechhh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWIL  265 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~vL  265 (307)
                      ...+|||||||+|.++..+++.  +.+++++|. +.+++.|+.      ...+|+++++|+.+ +.+  .||+|++..+|
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            4568999999999999999874  679999999 888888875      23589999999866 333  49999999999


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      |++++.+  .+|++++++|+|   ||.++|.+.
T Consensus       209 eHv~d~~--~~L~~l~r~LkP---GG~liist~  236 (322)
T PLN02396        209 EHVANPA--EFCKSLSALTIP---NGATVLSTI  236 (322)
T ss_pred             HhcCCHH--HHHHHHHHHcCC---CcEEEEEEC
Confidence            9999874  899999999999   899988764

>PRK06202 hypothetical protein; Provisional

Probab=99.35  E-value=2.2e-11  Score=106.15  Aligned_cols=102  Identities=24%  Similarity=0.275  Sum_probs=79.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHH----CCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CC-C-CccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKA----FPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AI-P-PADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~-p-~~D~i~~~~v  264 (307)
                      .+..+|||||||+|.++..|++.    .|+.+++++|+ +.+++.+++  ...++++...+... +. + .+|+|+++.+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~  138 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF  138 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence            45679999999999999888764    45679999999 899998886  33456666654433 22 2 5999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +|++++++...+|++++++++     |.++|.+...+
T Consensus       139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~  170 (232)
T PRK06202        139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRS  170 (232)
T ss_pred             eecCChHHHHHHHHHHHHhcC-----eeEEEeccccC
Confidence            999999887899999999986     56777665543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.34  E-value=3.7e-11  Score=104.69  Aligned_cols=110  Identities=23%  Similarity=0.304  Sum_probs=90.4

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--  254 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--  254 (307)
                      ++..+.  ..+..+|||||||+|.++..+++.+| ..+++++|+ +.+++.+++      ...++++..+|+.+ +.+  
T Consensus        43 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  120 (239)
T PRK00216         43 TIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN  120 (239)
T ss_pred             HHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence            344443  33567999999999999999999998 689999999 777787776      24679999999987 333  


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      .+|+|+++.++|++++.  ..+|+++.++|+|   ||++++++...++
T Consensus       121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~  163 (239)
T PRK00216        121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPT  163 (239)
T ss_pred             CccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCC
Confidence            49999999999998875  5889999999999   9999999887654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.33  E-value=1.6e-11  Score=113.43  Aligned_cols=109  Identities=15%  Similarity=0.239  Sum_probs=87.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----c---CCCeEEEecCCCCCCC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----D---LANLKYVGGDMFEAIP  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~---~~rv~~~~~d~~~~~p  254 (307)
                      +.+++.++  .....+|||+|||+|..+..+++++|+.+++++|. +.+++.+++     .   ..+++++..|+++..+
T Consensus       218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~  295 (378)
T PRK15001        218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE  295 (378)
T ss_pred             HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence            34555555  23346899999999999999999999999999999 677887775     1   2478999999988553


Q ss_pred             --CccEEEechhhc---cCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          255 --PADAVVLKWILH---DWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       255 --~~D~i~~~~vLh---~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                        .||+|+++-.+|   .++++.+.++++.++++|+|   ||+++|+-
T Consensus       296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~  340 (378)
T PRK15001        296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA  340 (378)
T ss_pred             CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence              599999975554   45666678999999999999   99999884

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.33  E-value=1.6e-11  Score=118.22  Aligned_cols=113  Identities=17%  Similarity=0.260  Sum_probs=93.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC---CCC--
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE---AIP--  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~---~~p--  254 (307)
                      ..+++.++  ..+..+|||||||+|.++..+++.+  .+++++|. +.+++.+.+   ..++++++++|+..   ++|  
T Consensus        27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~  102 (475)
T PLN02336         27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG  102 (475)
T ss_pred             hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence            44555554  3455689999999999999999985  47899999 888877654   35689999999964   344  


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      .+|+|++..++|++++++...+|+++++.|+|   ||++++.|.+....
T Consensus       103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~  148 (475)
T PLN02336        103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQS  148 (475)
T ss_pred             CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCC
Confidence            49999999999999998888999999999999   99999999887654

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.33  E-value=1e-11  Score=103.13  Aligned_cols=100  Identities=19%  Similarity=0.297  Sum_probs=80.5

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEAIP--PADAVVLKWILHD  267 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~  267 (307)
                      -....+++|+|||.|.++..|+.++.  +++++|+ +..++.|++   ..++|+|+..|+-+..|  .||+|+++.|+|+
T Consensus        41 ~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY  118 (201)
T PF05401_consen   41 RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY  118 (201)
T ss_dssp             TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred             ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence            45567899999999999999999973  7899999 888999987   45799999999988666  4999999999999


Q ss_pred             CCh-hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          268 WND-EECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       268 ~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +++ ++...+++++.++|+|   ||.+++-..
T Consensus       119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~  147 (201)
T PF05401_consen  119 LDDAEDLRAALDRLVAALAP---GGHLVFGHA  147 (201)
T ss_dssp             SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCC---CCEEEEEEe
Confidence            986 6788899999999999   888888654

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.32  E-value=4.7e-12  Score=108.68  Aligned_cols=96  Identities=21%  Similarity=0.249  Sum_probs=82.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCC----CeEEEecCCCCCCCCccEEEechh
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLA----NLKYVGGDMFEAIPPADAVVLKWI  264 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~----rv~~~~~d~~~~~p~~D~i~~~~v  264 (307)
                      ..+|||||||+|.++..|++.  +.+++++|. +.+++.|++       ...    |++|.+.|.....+.||+|+++.+
T Consensus        90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev  167 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV  167 (282)
T ss_pred             CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence            367999999999999999999  578999999 888888876       122    588888888776667999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      ++|..|.  ..+++.+.+.|+|   +|+++|.+..
T Consensus       168 leHV~dp--~~~l~~l~~~lkP---~G~lfittin  197 (282)
T KOG1270|consen  168 LEHVKDP--QEFLNCLSALLKP---NGRLFITTIN  197 (282)
T ss_pred             HHHHhCH--HHHHHHHHHHhCC---CCceEeeehh
Confidence            9999887  4899999999999   8999987654

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.31  E-value=4.5e-11  Score=103.31  Aligned_cols=90  Identities=18%  Similarity=0.192  Sum_probs=76.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCccEEEechhhcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPADAVVLKWILHD  267 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~  267 (307)
                      .+..+|||||||+|.++..+++.  +.+++++|. +.++..+++      ..++++|..+|+.+....+|+|++..++++
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~  131 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH  131 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence            34679999999999999999986  458999999 888888876      225899999999874356999999999999


Q ss_pred             CChhHHHHHHHHHHHhccC
Q 037127          268 WNDEECVKILKKCKEAITS  286 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p  286 (307)
                      +++++...+++++++.+++
T Consensus       132 ~~~~~~~~~l~~i~~~~~~  150 (219)
T TIGR02021       132 YPASDMAKALGHLASLTKE  150 (219)
T ss_pred             CCHHHHHHHHHHHHHHhCC
Confidence            9887778899999998875

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.31  E-value=2.6e-11  Score=108.23  Aligned_cols=104  Identities=14%  Similarity=0.308  Sum_probs=87.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~  263 (307)
                      +....+|||||||+|..+..+++.. +..+++++|+ +.+++.+++     ..+++++..+|+.+ +++  .||+|++..
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            4567899999999999888877764 5668999999 888888876     34689999999877 554  499999999


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ++|++++.  .++|++++++|+|   ||++++.+.+...
T Consensus       155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~  188 (272)
T PRK11873        155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRG  188 (272)
T ss_pred             cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccC
Confidence            99988875  4789999999999   9999999876543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.31  E-value=2.4e-11  Score=102.40  Aligned_cols=97  Identities=22%  Similarity=0.370  Sum_probs=79.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-CccEEEechhhc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-PADAVVLKWILH  266 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh  266 (307)
                      .....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++     ..++++++.+|...+.+ .+|++++....+
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~  108 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG  108 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence            45677999999999999999999999999999999 788888765     23579999999865554 599999887654


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ++     ..+++.+++.|+|   ||++++...
T Consensus       109 ~~-----~~~l~~~~~~Lk~---gG~lv~~~~  132 (187)
T PRK08287        109 NL-----TAIIDWSLAHLHP---GGRLVLTFI  132 (187)
T ss_pred             CH-----HHHHHHHHHhcCC---CeEEEEEEe
Confidence            33     4689999999998   898877543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.29  E-value=8.3e-12  Score=106.41  Aligned_cols=98  Identities=18%  Similarity=0.244  Sum_probs=80.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCC--eEEEecCCCC-CC--CCccEEEechhhcc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLAN--LKYVGGDMFE-AI--PPADAVVLKWILHD  267 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~r--v~~~~~d~~~-~~--p~~D~i~~~~vLh~  267 (307)
                      ...+|||||||.|.++..+++.  +.+++++|+ +..++.|+.  ....  +.+.+....+ ..  ..||+|+|..||+|
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH  136 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH  136 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence            4678999999999999999999  589999999 788888875  2333  4466665555 22  36999999999999


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      .++++  .++++|.+.+||   ||.+++....+
T Consensus       137 v~dp~--~~~~~c~~lvkP---~G~lf~STinr  164 (243)
T COG2227         137 VPDPE--SFLRACAKLVKP---GGILFLSTINR  164 (243)
T ss_pred             cCCHH--HHHHHHHHHcCC---CcEEEEecccc
Confidence            99986  599999999999   88888876653

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.28  E-value=6.4e-11  Score=102.11  Aligned_cols=103  Identities=20%  Similarity=0.309  Sum_probs=87.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC--CccEEEechhhc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP--PADAVVLKWILH  266 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh  266 (307)
                      .+..+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++   ...+++++.+|+.+ +.+  .+|+|++..++|
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~  117 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR  117 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence            45789999999999999999999987 78999999 777777765   34689999999987 333  499999999999


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ++++.  ..+|+++++.|+|   ||++++++...+.
T Consensus       118 ~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~  148 (223)
T TIGR01934       118 NVTDI--QKALREMYRVLKP---GGRLVILEFSKPA  148 (223)
T ss_pred             CcccH--HHHHHHHHHHcCC---CcEEEEEEecCCC
Confidence            88775  5899999999999   9999999876543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK05785 hypothetical protein; Provisional

Probab=99.27  E-value=3.4e-11  Score=104.53  Aligned_cols=95  Identities=17%  Similarity=0.192  Sum_probs=77.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDE  271 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~  271 (307)
                      ...+|||||||+|.++..+++.+ +.+++++|+ +.|++.+++   +..++++|+.+ |++  .||+|++..+||++++.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~---~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~  126 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLV---ADDKVVGSFEALPFRDKSFDVVMSSFALHASDNI  126 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHh---ccceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence            36799999999999999999987 579999999 899998874   23467888877 555  49999999999999876


Q ss_pred             HHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          272 ECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       272 ~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                        .+.|++++++|+|   .  +.|+|...|
T Consensus       127 --~~~l~e~~RvLkp---~--~~ile~~~p  149 (226)
T PRK05785        127 --EKVIAEFTRVSRK---Q--VGFIAMGKP  149 (226)
T ss_pred             --HHHHHHHHHHhcC---c--eEEEEeCCC
Confidence              4789999999997   3  445565444

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.27  E-value=7.2e-11  Score=92.09  Aligned_cols=95  Identities=21%  Similarity=0.297  Sum_probs=76.7

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CC-CCccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AI-PPADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~-p~~D~i~~~~  263 (307)
                      .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++     ..++++++.+|+..   .. +.+|+|++..
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~   96 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG   96 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence            44556999999999999999999999999999999 777877765     24679999998764   12 3599999876


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ..+     ...++++++++.|+|   ||++++.
T Consensus        97 ~~~-----~~~~~l~~~~~~Lk~---gG~li~~  121 (124)
T TIGR02469        97 SGG-----LLQEILEAIWRRLRP---GGRIVLN  121 (124)
T ss_pred             cch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence            543     235899999999999   8888764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.27  E-value=6.2e-11  Score=98.38  Aligned_cols=99  Identities=23%  Similarity=0.403  Sum_probs=80.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLKWILHD  267 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~  267 (307)
                      ...+|||+|||+|..+..+++.+|+.+++++|. +.+++.+++     ..+.++++..|++++.+  .||+|++.=.+|.
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~  110 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA  110 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence            567899999999999999999999999999999 788888776     22339999999999765  5999999988875


Q ss_pred             CCh---hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          268 WND---EECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       268 ~~~---~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      -.+   +-..++++.+.+.|+|   ||+++++-
T Consensus       111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~  140 (170)
T PF05175_consen  111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVI  140 (170)
T ss_dssp             TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence            543   2457899999999999   89987654

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.27  E-value=6.4e-11  Score=99.24  Aligned_cols=109  Identities=19%  Similarity=0.266  Sum_probs=83.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~  256 (307)
                      ..++..++  .-++.++||+|||.|..+..|++.  +..|+++|. +..++.+.+    ..-.|+....|+.+ .++ .+
T Consensus        20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y   95 (192)
T PF03848_consen   20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY   95 (192)
T ss_dssp             HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred             HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence            44566666  445779999999999999999998  889999999 556666554    23348999999987 454 59


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      |+|++..|+++.+.+....+++++.++++|   ||.++|+..+
T Consensus        96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~  135 (192)
T PF03848_consen   96 DFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFM  135 (192)
T ss_dssp             EEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB
T ss_pred             CEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEec
Confidence            999999999999998889999999999999   8888886654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.27  E-value=9.5e-11  Score=109.28  Aligned_cols=112  Identities=9%  Similarity=0.104  Sum_probs=90.6

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCCCCCCccEEEe
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFEAIPPADAVVL  261 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~~~p~~D~i~~  261 (307)
                      .+++.+.  ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++  ....+++...|+.+....||+|++
T Consensus       158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs  234 (383)
T PRK11705        158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS  234 (383)
T ss_pred             HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence            3445554  5667899999999999999999876 579999999 888888876  223588888888653235999999


Q ss_pred             chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ..++++.++.....++++++++|+|   ||++++.+...+.
T Consensus       235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~  272 (383)
T PRK11705        235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNK  272 (383)
T ss_pred             eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCC
Confidence            9999988877667899999999999   9999998765543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.25  E-value=1.7e-10  Score=99.07  Aligned_cols=102  Identities=14%  Similarity=0.093  Sum_probs=85.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEecCCCCCC---
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGDMFEAI---  253 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d~~~~~---  253 (307)
                      ....+|||+|||.|..+..|+++  +.+++++|+ |..++.+.+                 ...+|++.++|+++..   
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            34579999999999999999987  789999999 777776422                 1347999999999832   


Q ss_pred             -CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          254 -PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       254 -p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                       +.||.|+-+.++|+++.+...+.++++.++|+|   ||+++++....+
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~  156 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYD  156 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcC
Confidence             358999999999999998888999999999999   898877766553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.25  E-value=1e-10  Score=107.38  Aligned_cols=100  Identities=16%  Similarity=0.252  Sum_probs=82.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC-CccEEEechhhccC--
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP-PADAVVLKWILHDW--  268 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh~~--  268 (307)
                      ..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++    ..-..+++..|.++..+ .||+|+++-.+|..  
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~  276 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQ  276 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCcc
Confidence            45899999999999999999999999999999 778888775    22245778889887554 59999999999863  


Q ss_pred             -ChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          269 -NDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       269 -~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                       ..+...++++++.+.|+|   ||+++|+...
T Consensus       277 ~~~~~~~~~i~~a~~~Lkp---gG~L~iVan~  305 (342)
T PRK09489        277 TSLDAAQTLIRGAVRHLNS---GGELRIVANA  305 (342)
T ss_pred             ccHHHHHHHHHHHHHhcCc---CCEEEEEEeC
Confidence             234567999999999999   9999887643

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.24  E-value=1.4e-10  Score=97.53  Aligned_cols=95  Identities=22%  Similarity=0.274  Sum_probs=78.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC-CccEEEechhhcc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP-PADAVVLKWILHD  267 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~  267 (307)
                      ...+|||||||+|..+..+++..|+.+++++|. +.+++.+++     ..++++++.+|+.+ +.. .||+|++..+   
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~---  121 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV---  121 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence            367999999999999999999999999999999 788887775     33459999999877 223 5999998652   


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                       .+  ...+++.+++.|+|   ||++++++..
T Consensus       122 -~~--~~~~l~~~~~~Lkp---GG~lv~~~~~  147 (187)
T PRK00107        122 -AS--LSDLVELCLPLLKP---GGRFLALKGR  147 (187)
T ss_pred             -cC--HHHHHHHHHHhcCC---CeEEEEEeCC
Confidence             22  35789999999999   9999988643

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.24  E-value=4.5e-11  Score=100.14  Aligned_cols=92  Identities=20%  Similarity=0.210  Sum_probs=74.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C-CCCccEEEechhhccC
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A-IPPADAVVLKWILHDW  268 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~-~p~~D~i~~~~vLh~~  268 (307)
                      ..+|||||||+|..+..++..+|+.+++++|. +.+++.+++     ..++++++++|+.+ + ...||+|++.. +|++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~  121 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL  121 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence            67899999999999999999999999999999 677766654     34579999999977 2 23599988765 5543


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                           ..+++.+++.|+|   ||++++..
T Consensus       122 -----~~~~~~~~~~Lkp---gG~lvi~~  142 (181)
T TIGR00138       122 -----NVLLELTLNLLKV---GGYFLAYK  142 (181)
T ss_pred             -----HHHHHHHHHhcCC---CCEEEEEc
Confidence                 3578888999999   89988874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR03438 probable methyltransferase

Probab=99.22  E-value=8.7e-11  Score=106.33  Aligned_cols=97  Identities=13%  Similarity=0.252  Sum_probs=79.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC--CC-C-----ccEE
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA--IP-P-----ADAV  259 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~--~p-~-----~D~i  259 (307)
                      ...+|||+|||+|..+..|++..+ ..+++++|+ +.+++.+.+      ..-+|.++++|+.+.  .+ .     ..++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            456899999999999999999987 589999999 778877765      224577889999873  22 2     2356


Q ss_pred             EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      ++...+++++++++..+|++++++|+|   ||.++|
T Consensus       143 ~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li  175 (301)
T TIGR03438       143 FPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI  175 (301)
T ss_pred             EecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence            777899999999999999999999999   888776

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.22  E-value=4.9e-11  Score=97.35  Aligned_cols=95  Identities=23%  Similarity=0.333  Sum_probs=74.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC---CCCCccEEEechhhccCC
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIPPADAVVLKWILHDWN  269 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p~~D~i~~~~vLh~~~  269 (307)
                      .....+|||||||+|.++..+.+..  .+++++|. +.+++.     ..+.+...+...   +...||+|++..+||+++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~   92 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP   92 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence            3567899999999999999997763  39999999 667665     223333332223   223599999999999999


Q ss_pred             hhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          270 DEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       270 ~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      +.  ..+|+++++.|+|   ||.++|.++..
T Consensus        93 d~--~~~l~~l~~~Lkp---gG~l~~~~~~~  118 (161)
T PF13489_consen   93 DP--EEFLKELSRLLKP---GGYLVISDPNR  118 (161)
T ss_dssp             HH--HHHHHHHHHCEEE---EEEEEEEEEBT
T ss_pred             cH--HHHHHHHHHhcCC---CCEEEEEEcCC
Confidence            74  5999999999999   89999998865

...

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.19  E-value=2.6e-10  Score=99.04  Aligned_cols=90  Identities=18%  Similarity=0.249  Sum_probs=74.8

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCccEEEechhhcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPADAVVLKWILHD  267 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~  267 (307)
                      .+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++      ..+++++..+|+......||+|++..++|+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~  139 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH  139 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence            456799999999999999999875  46999999 888888876      225899999995433346999999999999


Q ss_pred             CChhHHHHHHHHHHHhccC
Q 037127          268 WNDEECVKILKKCKEAITS  286 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p  286 (307)
                      |++++...+++++.+.+++
T Consensus       140 ~~~~~~~~~l~~l~~~~~~  158 (230)
T PRK07580        140 YPQEDAARMLAHLASLTRG  158 (230)
T ss_pred             CCHHHHHHHHHHHHhhcCC
Confidence            9998888999999987653

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.18  E-value=3.1e-10  Score=94.98  Aligned_cols=101  Identities=20%  Similarity=0.273  Sum_probs=81.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC-CccEEEechhhccCC
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP-PADAVVLKWILHDWN  269 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh~~~  269 (307)
                      +..+|||+|||+|.++..+++..+  +++++|+ |.+++.+++    ..-+++++.+|+.+..+ .||+|+++-..|..+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~   96 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE   96 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence            456899999999999999999876  8999999 888888776    23468899999887433 699999998887665


Q ss_pred             hh-------------------HHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          270 DE-------------------ECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       270 ~~-------------------~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +.                   -..++|+++.++|+|   ||++++++....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~  144 (179)
T TIGR00537        97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN  144 (179)
T ss_pred             chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC
Confidence            32                   135789999999999   999999886554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.17  E-value=6.3e-10  Score=95.91  Aligned_cols=102  Identities=12%  Similarity=0.085  Sum_probs=84.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEecCCCCC----
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGDMFEA----  252 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d~~~~----  252 (307)
                      .+..+|||+|||.|..+..|+++  +.+++++|+ +..++.+..                 ...+|++.++|+++.    
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            34579999999999999999986  889999999 677776522                 136799999999983    


Q ss_pred             CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          253 IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       253 ~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      .+.+|+|+-+-++|+++.+...+.++.+.++|+|   ||+++++....+
T Consensus       114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~  159 (218)
T PRK13255        114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYP  159 (218)
T ss_pred             CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeC
Confidence            2358999999999999999889999999999999   887666555444

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.16  E-value=1.6e-10  Score=98.61  Aligned_cols=99  Identities=17%  Similarity=0.179  Sum_probs=78.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCC-CC-C--CC--CccEEEech
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDM-FE-A--IP--PADAVVLKW  263 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~-~~-~--~p--~~D~i~~~~  263 (307)
                      ...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++     ..++++++++|+ .. +  ++  .+|++++..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            467899999999999999999999999999999 888888765     236899999999 33 2  33  489998865


Q ss_pred             hhccCCh------hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          264 ILHDWND------EECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       264 vLh~~~~------~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ..+.+..      .....+|++++++|+|   ||.++|..
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~  156 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT  156 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence            5432111      1135789999999999   89998874

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.12  E-value=8.8e-10  Score=94.27  Aligned_cols=98  Identities=13%  Similarity=0.110  Sum_probs=76.2

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC---
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP---  254 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p---  254 (307)
                      +++.+.  .....+|||||||+|..+..+++..+ ..+++++|. +.+++.+++      ..++++++.+|+.+..+   
T Consensus        64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~  141 (205)
T PRK13944         64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA  141 (205)
T ss_pred             HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence            344444  45567999999999999999998864 568999999 788877765      23579999999987433   


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .||+|++...++.++        +++.+.|+|   ||++++.
T Consensus       142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~  172 (205)
T PRK13944        142 PFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP  172 (205)
T ss_pred             CccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence            599999998887655        356678998   8998774

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.11  E-value=5.1e-10  Score=94.91  Aligned_cols=98  Identities=19%  Similarity=0.301  Sum_probs=76.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---C-CC--CccEEEech
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---A-IP--PADAVVLKW  263 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~-~p--~~D~i~~~~  263 (307)
                      ...++||||||+|.++..+++++|+.+++++|+ +.+++.+.+     ...+++++.+|+.+   . .+  .+|.+++..
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            345899999999999999999999999999999 778877764     24589999999975   1 33  378887765


Q ss_pred             hhccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          264 ILHDWNDEE-------CVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       264 vLh~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ..+ |+...       ...+++.++++|+|   ||.+++..
T Consensus        96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t  132 (194)
T TIGR00091        96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT  132 (194)
T ss_pred             CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence            433 43321       14689999999999   89987754

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.2e-09  Score=96.59  Aligned_cols=110  Identities=15%  Similarity=0.237  Sum_probs=87.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~~  256 (307)
                      +-+++.++  .....+|+|+|||.|..+..+++.+|+.+++.+|. ...++.+++     ..++.++...|.+++.. .|
T Consensus       148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf  225 (300)
T COG2813         148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF  225 (300)
T ss_pred             HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence            44566666  33344999999999999999999999999999999 667777776     23333677889998766 59


Q ss_pred             cEEEechhhcc---CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          257 DAVVLKWILHD---WNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       257 D~i~~~~vLh~---~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      |+|+++=.+|.   ....-+.++++.++++|++   ||.+.|+-.
T Consensus       226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan  267 (300)
T COG2813         226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN  267 (300)
T ss_pred             cEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence            99999999984   2333456899999999999   999998865

>PRK04266 fibrillarin; Provisional

Probab=99.10  E-value=1.2e-09  Score=94.69  Aligned_cols=94  Identities=12%  Similarity=0.183  Sum_probs=73.5

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC-----CC-CccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA-----IP-PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~-----~p-~~D~i~~~~  263 (307)
                      ..+..+|||+|||+|.++..+++..+.-+++++|+ +.+++.+.+   ...+|.++.+|...+     ++ .+|+++   
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~---  146 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY---  146 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE---
Confidence            56678999999999999999999987668999999 777765543   336799999998753     22 388887   


Q ss_pred             hhccCChh-HHHHHHHHHHHhccCCCCCcEEEE
Q 037127          264 ILHDWNDE-ECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       264 vLh~~~~~-~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                        |+.+++ ....+|++++++|||   ||+++|
T Consensus       147 --~d~~~p~~~~~~L~~~~r~LKp---GG~lvI  174 (226)
T PRK04266        147 --QDVAQPNQAEIAIDNAEFFLKD---GGYLLL  174 (226)
T ss_pred             --ECCCChhHHHHHHHHHHHhcCC---CcEEEE
Confidence              344433 234578999999999   999999

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.08  E-value=1.7e-09  Score=95.19  Aligned_cols=98  Identities=24%  Similarity=0.398  Sum_probs=76.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEechhh--
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLKWIL--  265 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~~vL--  265 (307)
                      ...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++.     ..++++++.+|++++.+  .+|+|++.-..  
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence            456899999999999999999999999999999 788887765     33579999999988654  49999884322  


Q ss_pred             ----ccCChh------------------HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          266 ----HDWNDE------------------ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       266 ----h~~~~~------------------~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                          |.+..+                  ....+++++.+.|+|   ||++++.
T Consensus       167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~  216 (251)
T TIGR03534       167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLE  216 (251)
T ss_pred             hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEE
Confidence                222221                  123789999999998   8887764

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.07  E-value=1.4e-09  Score=97.70  Aligned_cols=99  Identities=22%  Similarity=0.381  Sum_probs=77.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEech---
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLKW---  263 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~~---  263 (307)
                      +..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++      ..++|+++.+|++++.+  .+|+|++.=   
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~  200 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV  200 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence            456899999999999999999999999999999 788888876      24689999999988655  499999751   


Q ss_pred             ----------hhccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          264 ----------ILHDWND----------EECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       264 ----------vLh~~~~----------~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                                .+++.|.          +...++++.+.+.|+|   ||+++ +|.
T Consensus       201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~-~e~  251 (284)
T TIGR03533       201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLV-VEV  251 (284)
T ss_pred             CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEE-EEE
Confidence                      1121221          1236789999999998   78765 443

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.05  E-value=2.8e-09  Score=91.65  Aligned_cols=100  Identities=15%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC---
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI---  253 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~---  253 (307)
                      ..++..++  ..+..+|||||||+|+.+..+++.. ++.+++++|. +.+++.+++     ..++++++.+|..+..   
T Consensus        66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~  143 (212)
T PRK13942         66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN  143 (212)
T ss_pred             HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence            34455555  5677899999999999999998875 4468999999 888888876     3468999999998733   


Q ss_pred             CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          254 PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       254 p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ..||+|++....+..+        +.+.+.|+|   ||++++.
T Consensus       144 ~~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~  175 (212)
T PRK13942        144 APYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIP  175 (212)
T ss_pred             CCcCEEEECCCcccch--------HHHHHhhCC---CcEEEEE
Confidence            2599999987765443        356668998   9998875

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.04  E-value=1.5e-09  Score=96.98  Aligned_cols=91  Identities=15%  Similarity=0.269  Sum_probs=73.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC---CeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccC
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPN---LECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDW  268 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~---~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~  268 (307)
                      ...+|||||||+|.++..+++.+|.   .+++++|+ +.+++.|.+..+++++..+|..+ +++  .+|+|+....    
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----  160 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----  160 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence            4568999999999999999998875   36899999 88888887655679999999887 555  4999986532    


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +     ..+++++++|+|   ||+++++.+
T Consensus       161 ~-----~~~~e~~rvLkp---gG~li~~~p  182 (272)
T PRK11088        161 P-----CKAEELARVVKP---GGIVITVTP  182 (272)
T ss_pred             C-----CCHHHHHhhccC---CCEEEEEeC
Confidence            1     236788999999   999998754

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.03  E-value=2.7e-09  Score=98.53  Aligned_cols=106  Identities=14%  Similarity=0.231  Sum_probs=81.0

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CCC--
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIP--  254 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p--  254 (307)
                      +++.+.  ......+||||||+|.++..+++.+|+..++++|+ +.++..+.+     ..++|.++.+|+..   .++  
T Consensus       114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence            444444  23456899999999999999999999999999999 777776654     35679999999853   344  


Q ss_pred             CccEEEechhhccCChhHH-----HHHHHHHHHhccCCCCCcEEEEEe
Q 037127          255 PADAVVLKWILHDWNDEEC-----VKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~-----~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      .+|.|++.... .|+...-     ..+|+.++++|+|   ||.+.+..
T Consensus       192 s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~T  235 (390)
T PRK14121        192 SVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRT  235 (390)
T ss_pred             ceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEE
Confidence            48999876543 2654322     4789999999999   89988753

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.03  E-value=2.1e-09  Score=97.37  Aligned_cols=95  Identities=23%  Similarity=0.363  Sum_probs=75.9

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEech-----
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLKW-----  263 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~~-----  263 (307)
                      .+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++      ..++|+++.+|+++..|  .+|+|++.=     
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~  214 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA  214 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence            6899999999999999999999999999999 888888876      24689999999988655  499999751     


Q ss_pred             --------hhccCCh----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          264 --------ILHDWND----------EECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       264 --------vLh~~~~----------~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                              ..++.|.          +-...+++++.+.|+|   ||++++
T Consensus       215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~  261 (307)
T PRK11805        215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV  261 (307)
T ss_pred             cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence                    1122221          2236889999999998   787765

>PRK04457 spermidine synthase; Provisional

Probab=99.03  E-value=1.3e-09  Score=96.69  Aligned_cols=99  Identities=17%  Similarity=0.277  Sum_probs=78.5

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC---CCC-CccEEEech
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AIP-PADAVVLKW  263 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~p-~~D~i~~~~  263 (307)
                      +++++|||||||+|.++..+++.+|+.+++++|+ |.+++.+++      ..+|++++.+|..+   ..+ .||+|++..
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            4567899999999999999999999999999999 999999887      24789999999865   234 599998753


Q ss_pred             hhc-cCChh-HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          264 ILH-DWNDE-ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       264 vLh-~~~~~-~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .-. ..+.. ....+++++++.|+|   ||+++|.
T Consensus       145 ~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin  176 (262)
T PRK04457        145 FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN  176 (262)
T ss_pred             CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence            111 12221 126899999999999   8888874

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.02  E-value=4.1e-09  Score=90.81  Aligned_cols=99  Identities=13%  Similarity=0.170  Sum_probs=76.4

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP---  254 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p---  254 (307)
                      .++..+.  ..+..+|||||||+|.++..+++..+ +.+++++|. +.+++.+++     ..++++++.+|..+..+   
T Consensus        68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence            3444444  56678999999999999999999865 467999998 888888876     34689999999987322   


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .||+|++....+..        .+.+.+.|+|   ||++++.
T Consensus       146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~---gG~lv~~  176 (215)
T TIGR00080       146 PYDRIYVTAAGPKI--------PEALIDQLKE---GGILVMP  176 (215)
T ss_pred             CCCEEEEcCCcccc--------cHHHHHhcCc---CcEEEEE
Confidence            59999987665433        3456788998   8998874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.02  E-value=4.2e-09  Score=94.60  Aligned_cols=97  Identities=20%  Similarity=0.346  Sum_probs=76.3

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEec------
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLK------  262 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~------  262 (307)
                      .+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++      ..++++|+.+|++++.+  .+|+|++.      
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            6899999999999999999999999999999 778888776      33579999999998665  49999875      


Q ss_pred             -------hhhccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          263 -------WILHDWND----------EECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       263 -------~vLh~~~~----------~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                             .+.++-|.          +...++++++.+.|+|   ||.++ +|.
T Consensus       196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~-~e~  244 (284)
T TIGR00536       196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLV-CEI  244 (284)
T ss_pred             chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEE-EEE
Confidence                   23332221          1356789999999998   77654 443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.01  E-value=4.5e-09  Score=89.25  Aligned_cols=104  Identities=20%  Similarity=0.296  Sum_probs=78.8

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CC-CC
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AI-PP  255 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~-p~  255 (307)
                      ++..+.  .....+|||+|||+|.++..+++..|+.+++++|+ |.+++.+++     ..++++++.+|+.+   .. +.
T Consensus        32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (196)
T PRK07402         32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA  109 (196)
T ss_pred             HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence            344444  45667999999999999999999889999999999 888888775     23579999999865   22 23


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      +|.+++..      ......+++++.+.|+|   ||++++.....
T Consensus       110 ~d~v~~~~------~~~~~~~l~~~~~~Lkp---gG~li~~~~~~  145 (196)
T PRK07402        110 PDRVCIEG------GRPIKEILQAVWQYLKP---GGRLVATASSL  145 (196)
T ss_pred             CCEEEEEC------CcCHHHHHHHHHHhcCC---CeEEEEEeecH
Confidence            56655421      12346889999999998   89988876543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.00  E-value=5.1e-09  Score=92.64  Aligned_cols=112  Identities=11%  Similarity=0.081  Sum_probs=77.0

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhc---hh-c--CCCeEEEecCCCC-C-CC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGL---ES-D--LANLKYVGGDMFE-A-IP  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a---~~-~--~~rv~~~~~d~~~-~-~p  254 (307)
                      +.+.+.++  .-..++|||||||+|+++..++++.|. .++++|. +....++   ++ .  ..++.+.+.-+.+ + ..
T Consensus       105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~  181 (315)
T PF08003_consen  105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG  181 (315)
T ss_pred             HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence            34555554  234679999999999999999999664 6999997 3322222   22 2  2334444322222 2 22


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      .||+|++..||||..++  ...|+.++..|++   ||.+++=..+.+.+
T Consensus       182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~  225 (315)
T PF08003_consen  182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGD  225 (315)
T ss_pred             CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCC
Confidence            59999999999998887  5889999999998   77776655555543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.00  E-value=2.7e-09  Score=96.68  Aligned_cols=86  Identities=16%  Similarity=0.153  Sum_probs=70.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c------CCCeEEEecCCCCCCCCccEEEechh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D------LANLKYVGGDMFEAIPPADAVVLKWI  264 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~------~~rv~~~~~d~~~~~p~~D~i~~~~v  264 (307)
                      +..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    .      ..+++|...|+.+....||+|++..+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v  221 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV  221 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence            3579999999999999999986  578999999 788888876    1      24688999997653335999999999


Q ss_pred             hccCChhHHHHHHHHHHHh
Q 037127          265 LHDWNDEECVKILKKCKEA  283 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~  283 (307)
                      +|+++++....+++.+.+.
T Consensus       222 L~H~p~~~~~~ll~~l~~l  240 (315)
T PLN02585        222 LIHYPQDKADGMIAHLASL  240 (315)
T ss_pred             EEecCHHHHHHHHHHHHhh
Confidence            9999988777888888754

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.98  E-value=6.2e-09  Score=89.27  Aligned_cols=97  Identities=13%  Similarity=0.222  Sum_probs=74.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEecCCCCC---------CC--CccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGGDMFEA---------IP--PADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~---------~p--~~D~i~~  261 (307)
                      +.+..+|||||||+|.++..+++.. +..+++++|+.++.     ....++++++|+.++         .+  .+|+|++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S  123 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS  123 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence            3556799999999999999999987 45689999995532     234699999999873         32  4999998


Q ss_pred             chhhccCChh---------HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          262 KWILHDWNDE---------ECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       262 ~~vLh~~~~~---------~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ....|...+.         ....+|+.++++|+|   ||+++|...
T Consensus       124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~~  166 (209)
T PRK11188        124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKVF  166 (209)
T ss_pred             CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEEe
Confidence            7766544322         124689999999999   999988643

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.98  E-value=2.5e-09  Score=82.76  Aligned_cols=96  Identities=18%  Similarity=0.220  Sum_probs=76.6

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-C--CC--CccEEEechhh
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-A--IP--PADAVVLKWIL  265 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~--~p--~~D~i~~~~vL  265 (307)
                      .+|||+|||+|.++..+++.. ..+++++|+ |..++.++.      ..+|++++.+|+++ .  .+  .+|+|+++-..
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            489999999999999999998 789999999 788887776      35789999999987 2  33  59999998877


Q ss_pred             ccCCh------hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          266 HDWND------EECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       266 h~~~~------~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      +....      +....+++++.+.|+|   ||.++++-
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~  115 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT  115 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence            64321      1346899999999999   88888764

...

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.97  E-value=6.2e-09  Score=77.30  Aligned_cols=93  Identities=23%  Similarity=0.330  Sum_probs=76.8

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC----CCccEEEechhhccC
Q 037127          199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI----PPADAVVLKWILHDW  268 (307)
Q Consensus       199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~----p~~D~i~~~~vLh~~  268 (307)
                      +++|+|||.|.++..+++ .+..+++++|+ +..+..+++     ...++++..+|+.+..    +.+|++++..+++.+
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            589999999999999998 67789999999 666666652     4578999999998842    259999999999975


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                       .+....+++.+.+.+++   +|.+++.
T Consensus        80 -~~~~~~~l~~~~~~l~~---~g~~~~~  103 (107)
T cd02440          80 -VEDLARFLEEARRLLKP---GGVLVLT  103 (107)
T ss_pred             -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence             44567999999999998   8888764

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.97  E-value=9.7e-09  Score=91.67  Aligned_cols=98  Identities=23%  Similarity=0.368  Sum_probs=76.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEechhh-
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLKWIL-  265 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~~vL-  265 (307)
                      .+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++     ...+++++.+|++++.+  .+|+|++.-.. 
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~  186 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI  186 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence            4567899999999999999999999999999999 777887776     24689999999988654  59999874221 


Q ss_pred             -----ccCCh------------------hHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          266 -----HDWND------------------EECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       266 -----h~~~~------------------~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                           +....                  +....+++++.+.|+|   ||++++
T Consensus       187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~  236 (275)
T PRK09328        187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL  236 (275)
T ss_pred             CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE
Confidence                 11111                  1235788999999998   888776

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.94  E-value=4.6e-09  Score=91.04  Aligned_cols=100  Identities=8%  Similarity=0.182  Sum_probs=82.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---CC--CccEEEec
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---IP--PADAVVLK  262 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~p--~~D~i~~~  262 (307)
                      ....+|||+|||+|..+..++++++.++++++|+ +.+.+.|++      ..+||++++.|+.+-   .+  .||+|+|+
T Consensus        43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N  122 (248)
T COG4123          43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN  122 (248)
T ss_pred             ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence            3478999999999999999999999999999999 788888876      689999999999872   22  48999987


Q ss_pred             hhhccCChh----------------HHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          263 WILHDWNDE----------------ECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       263 ~vLh~~~~~----------------~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      =..+.-++.                ....+++.+++.|||   ||++.++-
T Consensus       123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~  170 (248)
T COG4123         123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVH  170 (248)
T ss_pred             CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEe
Confidence            655433222                235789999999999   89998764

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.94  E-value=1.2e-08  Score=88.85  Aligned_cols=97  Identities=16%  Similarity=0.193  Sum_probs=77.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC---C-CCccEEEechhh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA---I-PPADAVVLKWIL  265 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~---~-p~~D~i~~~~vL  265 (307)
                      .+..+|||||||+|.++..+++.  ..+++++|. +..++.+++    ...+++++..|+.+-   . ..||+|++.+++
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l  124 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML  124 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence            35678999999999999999886  468999999 677777664    234678888877652   2 259999999999


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ++.++.  ..+|+++.+.|+|   ||++++...
T Consensus       125 ~~~~~~--~~~l~~~~~~L~~---gG~l~v~~~  152 (233)
T PRK05134        125 EHVPDP--ASFVRACAKLVKP---GGLVFFSTL  152 (233)
T ss_pred             hccCCH--HHHHHHHHHHcCC---CcEEEEEec
Confidence            988876  4789999999998   899887654

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.93  E-value=1.8e-08  Score=83.20  Aligned_cols=97  Identities=24%  Similarity=0.281  Sum_probs=81.3

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---CCCccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---IPPADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~p~~D~i~~~~v  264 (307)
                      +.+..+++|||||+|..+.+.+..+|..+++.+|. ++.++..++     ..++++++.++.-+.   .|.+|.+++..-
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg  111 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG  111 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC
Confidence            56778999999999999999999999999999998 777776655     678999999998773   446999999887


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      ..      ...+|+.+.+.|+|   ||+|++.--.
T Consensus       112 ~~------i~~ile~~~~~l~~---ggrlV~nait  137 (187)
T COG2242         112 GN------IEEILEAAWERLKP---GGRLVANAIT  137 (187)
T ss_pred             CC------HHHHHHHHHHHcCc---CCeEEEEeec
Confidence            32      24889999999999   8998875433

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.90  E-value=1.5e-08  Score=86.19  Aligned_cols=94  Identities=20%  Similarity=0.246  Sum_probs=74.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C-CCccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I-PPADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~-p~~D~i~~  261 (307)
                      .....+|||+|||+|.++..+++.. +..+++++|. +.+++.+++      ..++++++.+|+.+.   . +.+|++++
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~  117 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI  117 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence            5567899999999999999998764 5679999999 888887765      257899999998762   2 35999988


Q ss_pred             chhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      ...     ..+...+|+.+.+.|+|   ||++++
T Consensus       118 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~  143 (198)
T PRK00377        118 GGG-----SEKLKEIISASWEIIKK---GGRIVI  143 (198)
T ss_pred             CCC-----cccHHHHHHHHHHHcCC---CcEEEE
Confidence            531     22345789999999998   898876

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.89  E-value=1.9e-08  Score=84.63  Aligned_cols=101  Identities=17%  Similarity=0.213  Sum_probs=76.6

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEecchH-HHHhchh-----cCCCe-EEEecCCCCC---C-------C-CccEEE
Q 037127          199 SLVDVGGATGTVAKAIAKAFPNLECTDFDLPH-VVNGLES-----DLANL-KYVGGDMFEA---I-------P-PADAVV  260 (307)
Q Consensus       199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~-~~~~a~~-----~~~rv-~~~~~d~~~~---~-------p-~~D~i~  260 (307)
                      +||+||+|||.++..+++++|+++-.--|.+. .....+.     ..+++ .-+.-|+.++   .       + .+|+|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            59999999999999999999999887777732 2222222     11221 2233444442   1       1 489999


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +.+++|..+-+.+..+++.+.++|++   ||.+++.-++.-+
T Consensus       108 ~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~  146 (204)
T PF06080_consen  108 CINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRD  146 (204)
T ss_pred             ehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccC
Confidence            99999999999999999999999998   9999999887654

The function of this family is unknown.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.89  E-value=1.2e-08  Score=88.28  Aligned_cols=96  Identities=17%  Similarity=0.205  Sum_probs=77.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cC-CCeEEEecCCCC-C--C-CCccEEEechhh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DL-ANLKYVGGDMFE-A--I-PPADAVVLKWIL  265 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~-~rv~~~~~d~~~-~--~-p~~D~i~~~~vL  265 (307)
                      +..+|||+|||+|.++..+++..  .+++++|+ +.+++.+++    .. .++++...|+.+ +  . ..+|+|++.+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            46789999999999999998864  46999999 677777765    22 268898888765 2  2 259999999999


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      |+..+.+  .+|++++++|++   ||.+++...
T Consensus       123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~~~  150 (224)
T TIGR01983       123 EHVPDPQ--AFIRACAQLLKP---GGILFFSTI  150 (224)
T ss_pred             HhCCCHH--HHHHHHHHhcCC---CcEEEEEec
Confidence            9988764  789999999998   899887754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK14968 putative methyltransferase; Provisional

Probab=98.89  E-value=2.5e-08  Score=83.67  Aligned_cols=100  Identities=18%  Similarity=0.279  Sum_probs=76.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCC-eEEEecCCCCCCC--CccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLAN-LKYVGGDMFEAIP--PADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~r-v~~~~~d~~~~~p--~~D~i~~~~v  264 (307)
                      .+..+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++      ..++ ++++.+|+.++.+  .+|++++...
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p   99 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP   99 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence            45678999999999999999998  678999999 778887765      2233 8999999988655  4999998654


Q ss_pred             hccCC-------------------hhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          265 LHDWN-------------------DEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       265 Lh~~~-------------------~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .+...                   ......+++++.++|+|   ||+++++...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~  150 (188)
T PRK14968        100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSS  150 (188)
T ss_pred             cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEcc
Confidence            43211                   12235689999999999   8988876543

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.88  E-value=1e-08  Score=86.84  Aligned_cols=86  Identities=17%  Similarity=0.220  Sum_probs=68.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC---CCC--CccEEEechhhccCC
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIP--PADAVVLKWILHDWN  269 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p--~~D~i~~~~vLh~~~  269 (307)
                      ...+|||||||+|.++..+++.. ..+++++|+ +.+++.+++  .+++++.+|+.+   +.+  .+|+|++..++|+++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~--~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~   89 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA--RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR   89 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH--cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence            45689999999999999888763 567899999 777777762  457888888865   233  499999999999998


Q ss_pred             hhHHHHHHHHHHHhccC
Q 037127          270 DEECVKILKKCKEAITS  286 (307)
Q Consensus       270 ~~~~~~~L~~~~~~L~p  286 (307)
                      +.  ..+|+++.+.+++
T Consensus        90 d~--~~~l~e~~r~~~~  104 (194)
T TIGR02081        90 NP--EEILDEMLRVGRH  104 (194)
T ss_pred             CH--HHHHHHHHHhCCe
Confidence            75  4778888777653

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.87  E-value=1.7e-08  Score=90.81  Aligned_cols=96  Identities=17%  Similarity=0.195  Sum_probs=72.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC-CccEEEechhhc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP-PADAVVLKWILH  266 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh  266 (307)
                      .+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++      ...++.+...+.....+ .||+|++....+
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~  236 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE  236 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence            34579999999999999888875 4458999999 778888776      34567777776443223 599998864432


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                           ....++.++++.|+|   ||++++....
T Consensus       237 -----~l~~ll~~~~~~Lkp---gG~li~sgi~  261 (288)
T TIGR00406       237 -----VIKELYPQFSRLVKP---GGWLILSGIL  261 (288)
T ss_pred             -----HHHHHHHHHHHHcCC---CcEEEEEeCc
Confidence                 245789999999999   8999887654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.87  E-value=2.4e-08  Score=92.94  Aligned_cols=99  Identities=17%  Similarity=0.254  Sum_probs=74.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC-CC---CccEEEechhhc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA-IP---PADAVVLKWILH  266 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~-~p---~~D~i~~~~vLh  266 (307)
                      +..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++    ...+++++.+|++++ .+   .+|+|+++-.-.
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI  330 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI  330 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence            446899999999999999999999999999999 888888876    345899999999873 32   499998854211


Q ss_pred             cC---------------------Ch--hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          267 DW---------------------ND--EECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       267 ~~---------------------~~--~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      .-                     .+  +--.++++.+.+.|+|   ||.++ +|.
T Consensus       331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~li-lEi  381 (423)
T PRK14966        331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLL-LEH  381 (423)
T ss_pred             CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEE-EEE
Confidence            00                     00  1124677888889998   78755 444

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.86  E-value=1e-07  Score=83.71  Aligned_cols=105  Identities=14%  Similarity=0.139  Sum_probs=86.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCC--CeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC------CCCccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPN--LECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA------IPPADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~------~p~~D~i  259 (307)
                      ..+.+||||.||+|.+....+..+|.  .++.+.|. |..++..++      ..+-++|.++|.|+.      .|.++++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            46789999999999999999999998  78999999 666777765      455569999999983      3468999


Q ss_pred             EechhhccCChhHH-HHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          260 VLKWILHDWNDEEC-VKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       260 ~~~~vLh~~~~~~~-~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +.+.+...|+|.+. ...|+.+++++.|   ||.++-.-.-+.+
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHP  254 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHP  254 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCc
Confidence            99999999999774 4479999999999   8888766544443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.85  E-value=1.2e-08  Score=84.72  Aligned_cols=86  Identities=17%  Similarity=0.286  Sum_probs=68.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC---CCC--CccEEEechhhcc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIP--PADAVVLKWILHD  267 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p--~~D~i~~~~vLh~  267 (307)
                      .++..+|||+|||.|.++..|.+. .++++.|+|+ ++-+..+-  ...++.+++|+.+   .+|  .||.++++.+|..
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv--~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~   87 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV--ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA   87 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH--HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence            356789999999999999888885 5899999999 44444433  4568899999987   355  4999999999998


Q ss_pred             CChhHHHHHHHHHHHhc
Q 037127          268 WNDEECVKILKKCKEAI  284 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L  284 (307)
                      ...++  ++|+++.++-
T Consensus        88 ~~~P~--~vL~EmlRVg  102 (193)
T PF07021_consen   88 VRRPD--EVLEEMLRVG  102 (193)
T ss_pred             HhHHH--HHHHHHHHhc
Confidence            87764  6788886653

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK14967 putative methyltransferase; Provisional

Probab=98.85  E-value=3.4e-08  Score=85.58  Aligned_cols=102  Identities=17%  Similarity=0.147  Sum_probs=74.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--CccEEEechhhc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVVLKWILH  266 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh  266 (307)
                      .....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++    ..-+++++.+|+.+..+  .||+|++.-..+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV  112 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence            344579999999999999999886 3348999999 777776665    23368999999987544  599999864322


Q ss_pred             cCCh-------------------hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          267 DWND-------------------EECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       267 ~~~~-------------------~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .-+.                   .....+++++.+.|++   ||+++++...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~  161 (223)
T PRK14967        113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSE  161 (223)
T ss_pred             CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEec
Confidence            1110                   1135688999999999   9999986543

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.85  E-value=7e-08  Score=83.17  Aligned_cols=102  Identities=10%  Similarity=0.028  Sum_probs=86.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEecCCCCCC---
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGDMFEAI---  253 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d~~~~~---  253 (307)
                      .+..+||+.|||.|.-+..|++.  +.+++++|+ +..++.+.+                 ...+|++.++|+|+-.   
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            34579999999999999999997  788999999 666776522                 2458999999999831   


Q ss_pred             ---CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          254 ---PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       254 ---p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                         ..+|+|+=+.+++.++++...+..+++.+.|+|   ||+++++....+
T Consensus       120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~  167 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHD  167 (226)
T ss_pred             cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecC
Confidence               259999999999999999999999999999999   899888876543

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.84  E-value=3.5e-08  Score=87.00  Aligned_cols=92  Identities=21%  Similarity=0.305  Sum_probs=68.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCccEEEechhhcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPADAVVLKWILHD  267 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~  267 (307)
                      ....+|||||||+|..+..+++..+. +++++|+ |.+++.+++      ..+++.+..+|.     .||+|+++...  
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~--  189 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA--  189 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence            45679999999999999887776443 6999999 788888776      224455444432     58998875322  


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                         +....+++++.+.|+|   ||++++.....
T Consensus       190 ---~~~~~l~~~~~~~Lkp---gG~lilsgi~~  216 (250)
T PRK00517        190 ---NPLLELAPDLARLLKP---GGRLILSGILE  216 (250)
T ss_pred             ---HHHHHHHHHHHHhcCC---CcEEEEEECcH
Confidence               2345789999999999   99999876554

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.84  E-value=2.6e-08  Score=82.86  Aligned_cols=129  Identities=20%  Similarity=0.194  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCC
Q 037127          167 INNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLA  240 (307)
Q Consensus       167 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~  240 (307)
                      ....|++.|..+.+.....+- .+- ..+....||+||||+|.--.- -.--|..+++++|. +.|.+.+.+     ...
T Consensus        49 ft~~yne~~~~ykrelFs~i~-~~~-gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~  125 (252)
T KOG4300|consen   49 FTSIYNEIADSYKRELFSGIY-YFL-GKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPL  125 (252)
T ss_pred             HHHHHHHHHHHHHHHHHhhhH-HHh-cccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCc
Confidence            344566666666443333221 111 123345689999999975422 12235678999999 777776655     344


Q ss_pred             CeE-EEecCCCC-C-CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          241 NLK-YVGGDMFE-A-IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       241 rv~-~~~~d~~~-~-~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      .+. |+.++..+ + ++  .+|.|++..+|--..+  .++.|+++++.|+|   ||+++++|.+..+-
T Consensus       126 ~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~--~~k~L~e~~rlLRp---gG~iifiEHva~~y  188 (252)
T KOG4300|consen  126 QVERFVVADGENLPQLADGSYDTVVCTLVLCSVED--PVKQLNEVRRLLRP---GGRIIFIEHVAGEY  188 (252)
T ss_pred             ceEEEEeechhcCcccccCCeeeEEEEEEEeccCC--HHHHHHHHHHhcCC---CcEEEEEecccccc
Confidence            566 88887776 3 34  4999999999985555  47999999999999   99999999987653

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.84  E-value=1.5e-08  Score=85.67  Aligned_cols=98  Identities=12%  Similarity=0.228  Sum_probs=70.4

Q ss_pred             CCCeEEEecCCchH--HHHHH--HHH----CC-CCeEEEecc-hHHHHhchh----------------------------
Q 037127          196 GLNSLVDVGGATGT--VAKAI--AKA----FP-NLECTDFDL-PHVVNGLES----------------------------  237 (307)
Q Consensus       196 ~~~~vlDvGgG~G~--~~~~l--~~~----~p-~~~~~~~Dl-~~~~~~a~~----------------------------  237 (307)
                      +..+|.-.||++|.  ++.++  .+.    .+ .+++++.|+ +.+++.|++                            
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            56899999999993  44333  231    22 468999999 888988875                            


Q ss_pred             -----cCCCeEEEecCCCC-CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          238 -----DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       238 -----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                           ...+|+|..+|+.+ +.+  .+|+|+|++||-+|+++...+++++++++|+|   ||.+++-
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence                 13579999999999 322  59999999999999999999999999999999   8888764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.83  E-value=5.6e-08  Score=83.50  Aligned_cols=92  Identities=14%  Similarity=0.187  Sum_probs=71.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---CccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP---PADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p---~~D~i~~~~v  264 (307)
                      ..+..+|||||||+|.++..+++...  +++++|. +.+++.+++     ...++++..+|..+..+   .||+|++...
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~  153 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA  153 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence            45678999999999999988887753  7999998 778877765     24569999999877433   4999999876


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      .+.+        .+.+.+.|+|   ||++++.-.
T Consensus       154 ~~~~--------~~~l~~~L~~---gG~lv~~~~  176 (212)
T PRK00312        154 APEI--------PRALLEQLKE---GGILVAPVG  176 (212)
T ss_pred             chhh--------hHHHHHhcCC---CcEEEEEEc
Confidence            6544        3456788998   898887543

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=98.83  E-value=1.5e-09  Score=70.62  Aligned_cols=49  Identities=49%  Similarity=0.863  Sum_probs=42.7

Q ss_pred             HHHHHHHhCCcccccccCC-CCCCHHHHHHHcC-CCCCCcccHHHHHHHHH
Q 037127           30 MSLKCAVELSIPDIINKHG-KPTTLNDLVSALT-INPSKTRCVYRLMRILI   78 (307)
Q Consensus        30 ~~L~~a~~lglfd~L~~~~-~~~t~~eLA~~~g-~~~~~~~~l~r~L~~L~   78 (307)
                      ++|++|++|||||.|+++| ++.|++|||.++. .+|.++..|+|+||+|+
T Consensus         1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~   51 (51)
T PF08100_consen    1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV   51 (51)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence            5899999999999999876 8999999999999 77667889999999985

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>PRK00811 spermidine synthase; Provisional

Probab=98.83  E-value=2.6e-08  Score=89.39  Aligned_cols=99  Identities=17%  Similarity=0.182  Sum_probs=76.5

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----------cCCCeEEEecCCCCC----CCCccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----------DLANLKYVGGDMFEA----IPPADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~~rv~~~~~d~~~~----~p~~D~i  259 (307)
                      +++++||+||||.|..+..+++..+..+++++|+ +.+++.+++          ..+|++++.+|..+-    ...||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            4577999999999999999998655568999999 888988876          157899999998762    1259999


Q ss_pred             EechhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 037127          260 VLKWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       260 ~~~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ++...-+.-+...  ...+++.+++.|+|   ||.+++.
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~  190 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ  190 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence            9865433222221  25789999999998   8877764

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.83  E-value=1.6e-08  Score=85.59  Aligned_cols=104  Identities=18%  Similarity=0.296  Sum_probs=76.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cC---CC-eEEEecCCCC--CCC-CccEEEechhhc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DL---AN-LKYVGGDMFE--AIP-PADAVVLKWILH  266 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~---~r-v~~~~~d~~~--~~p-~~D~i~~~~vLh  266 (307)
                      +..+.||.|+|.|..+..++-.+ --++-++|. +..++.|++ ..   .+ .++.+..+-+  |.+ .||+|++-|++-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg  133 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG  133 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence            46889999999999999886554 236777787 888888886 22   23 4555554443  433 599999999999


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      |++|++.+.+|++|+++|+|   +|.|+|=|.+...+
T Consensus       134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~  167 (218)
T PF05891_consen  134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSG  167 (218)
T ss_dssp             GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSS
T ss_pred             cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCC
Confidence            99999999999999999999   89999999887654

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.81  E-value=2.4e-08  Score=85.00  Aligned_cols=101  Identities=20%  Similarity=0.352  Sum_probs=86.6

Q ss_pred             CeEEEecCCchHHHHHHHHHCCC--CeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC---CC----CccEEEech
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPN--LECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA---IP----PADAVVLKW  263 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~---~p----~~D~i~~~~  263 (307)
                      .+||+||||.|...-.+++.+|+  +++...|- |..++..++    ...|+.-...|+..+   .|    ..|++++..
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence            37999999999999999999999  99999998 888888776    456777777777663   11    389999999


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +|...+.+.-...+.++++.|||   ||.|++-|+..-
T Consensus       153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~  187 (264)
T KOG2361|consen  153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRY  187 (264)
T ss_pred             EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccc
Confidence            99999988889999999999999   999999987654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.80  E-value=3.3e-08  Score=84.14  Aligned_cols=111  Identities=16%  Similarity=0.315  Sum_probs=80.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cC----------------
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DL----------------  239 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~----------------  239 (307)
                      +..++.+...+-.++.+|||||.+|.++..+++.|....++++|+ +..+..|++       ..                
T Consensus        46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~  125 (288)
T KOG2899|consen   46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG  125 (288)
T ss_pred             ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence            334444442244578899999999999999999998889999999 777888876       00                


Q ss_pred             -----------------CCeEEEe-------cCCCC-CCCCccEEEechhh---c-cCChhHHHHHHHHHHHhccCCCCC
Q 037127          240 -----------------ANLKYVG-------GDMFE-AIPPADAVVLKWIL---H-DWNDEECVKILKKCKEAITSNSKI  290 (307)
Q Consensus       240 -----------------~rv~~~~-------~d~~~-~~p~~D~i~~~~vL---h-~~~~~~~~~~L~~~~~~L~p~~~g  290 (307)
                                       +.+.|+.       .||.+ ..|.||+|+|-.+-   | +|.|+-.+++++++++.|.|   |
T Consensus       126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g  202 (288)
T KOG2899|consen  126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G  202 (288)
T ss_pred             cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence                             1222322       23443 24579999776542   4 69999999999999999999   4


Q ss_pred             cEEEEEee
Q 037127          291 GKVIIIDM  298 (307)
Q Consensus       291 g~lli~e~  298 (307)
                       .++|+|+
T Consensus       203 -GiLvvEP  209 (288)
T KOG2899|consen  203 -GILVVEP  209 (288)
T ss_pred             -cEEEEcC
Confidence             5556664

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.79  E-value=3.6e-08  Score=95.23  Aligned_cols=96  Identities=18%  Similarity=0.293  Sum_probs=74.6

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEech----
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLKW----  263 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~~----  263 (307)
                      ..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++      ..++++++.+|+++..+  .||+|++.-    
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~  218 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS  218 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence            46899999999999999999999999999999 788888876      34689999999987554  499998732    


Q ss_pred             ----------hhccCCh----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          264 ----------ILHDWND----------EECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       264 ----------vLh~~~~----------~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                                ++.+.|.          +--.++++.+.+.|+|   ||.+++
T Consensus       219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l  267 (506)
T PRK01544        219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL  267 (506)
T ss_pred             chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE
Confidence                      1111111          1234578889999998   887764

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.77  E-value=8.9e-08  Score=84.42  Aligned_cols=97  Identities=20%  Similarity=0.243  Sum_probs=73.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCCCCC-----CccEEEechhhc--
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFEAIP-----PADAVVLKWILH--  266 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~~~p-----~~D~i~~~~vLh--  266 (307)
                      ..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++  ....++++.+|+++..+     .+|+|++.=...  
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT  166 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence            45899999999999999999999999999999 888888876  22336899999987432     489988763221  


Q ss_pred             ----cCChh------------------HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          267 ----DWNDE------------------ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       267 ----~~~~~------------------~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                          ..+++                  -..++++.+.+.|+|   ||++++.
T Consensus       167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~  215 (251)
T TIGR03704       167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVE  215 (251)
T ss_pred             hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence                11111                  124788888899998   8887754

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.76  E-value=6.6e-08  Score=83.27  Aligned_cols=103  Identities=16%  Similarity=0.183  Sum_probs=82.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEecCCCCCCC-
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGDMFEAIP-  254 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d~~~~~p-  254 (307)
                      .....+||..|||.|.-+..|+++  +.+++++|+ +..++.+.+                 ...+|++.++|+|+-.+ 
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            455679999999999999999997  789999999 667777621                 24578999999999211 


Q ss_pred             ---CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          255 ---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       255 ---~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                         .||+|+=+-.++-++.+...+..+.+++.|+|   ||+++++....+
T Consensus       113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~  159 (218)
T PF05724_consen  113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYP  159 (218)
T ss_dssp             CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-
T ss_pred             hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcC
Confidence               59999999999999999999999999999999   899655554444

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.74  E-value=7.6e-08  Score=81.11  Aligned_cols=95  Identities=17%  Similarity=0.309  Sum_probs=70.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEecCCCCC---------CC--CccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGGDMFEA---------IP--PADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~---------~p--~~D~i~~  261 (307)
                      ..+..+|||+|||+|.++..+++.+ +..+++++|+.+..   .  ..+++++.+|+.++         .+  .+|+|++
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~--~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~  104 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---P--IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS  104 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---c--CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence            4567899999999999999999887 56789999995432   1  34688999998762         23  4999998


Q ss_pred             chhhc---cCCh------hHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          262 KWILH---DWND------EECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       262 ~~vLh---~~~~------~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ....|   .|.-      +....+|+.++++|+|   ||++++.
T Consensus       105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~  145 (188)
T TIGR00438       105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK  145 (188)
T ss_pred             CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence            54322   1221      1235789999999998   8998875

>PHA03411 putative methyltransferase; Provisional

Probab=98.73  E-value=1e-07  Score=83.91  Aligned_cols=97  Identities=13%  Similarity=0.124  Sum_probs=76.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCC-C-CccEEEechhhccCChhH-
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAI-P-PADAVVLKWILHDWNDEE-  272 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~-p-~~D~i~~~~vLh~~~~~~-  272 (307)
                      ..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++..++++++.+|+++.. . .+|+|++.-..++.+..+ 
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~  144 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT  144 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence            46899999999999999999887789999999 8888888864568999999999843 2 599999977776544321 


Q ss_pred             -----------------HHHHHHHHHHhccCCCCCcEEEEE
Q 037127          273 -----------------CVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       273 -----------------~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                                       ..++++.+...|+|   +|.++++
T Consensus       145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~  182 (279)
T PHA03411        145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA  182 (279)
T ss_pred             hhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE
Confidence                             13567777888888   6766554

>PTZ00146 fibrillarin; Provisional

Probab=98.72  E-value=1.9e-07  Score=83.15  Aligned_cols=95  Identities=14%  Similarity=0.124  Sum_probs=71.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hH----HHHhchhcCCCeEEEecCCCCCC------CCccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PH----VVNGLESDLANLKYVGGDMFEAI------PPADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~----~~~~a~~~~~rv~~~~~d~~~~~------p~~D~i~~  261 (307)
                      +.+..+|||+|||+|.++..+++... .-+++++|+ +.    +++.++ ...+|.++.+|+..+.      +.+|+|++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence            46678999999999999999999873 458999998 44    334443 3468999999987642      24899988


Q ss_pred             chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ....   ++ +...++.++++.|||   ||+++|.
T Consensus       209 Dva~---pd-q~~il~~na~r~LKp---GG~~vI~  236 (293)
T PTZ00146        209 DVAQ---PD-QARIVALNAQYFLKN---GGHFIIS  236 (293)
T ss_pred             eCCC---cc-hHHHHHHHHHHhccC---CCEEEEE
Confidence            7742   33 345667789999999   9999983

>PLN02366 spermidine synthase

Probab=98.72  E-value=1e-07  Score=86.23  Aligned_cols=99  Identities=18%  Similarity=0.153  Sum_probs=74.8

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---CCC--CccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AIP--PADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~p--~~D~i  259 (307)
                      +++++||+||||.|..+.++++..+-.+++++|+ +.|++.+++         ..+|++++.+|.++   ..+  .||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            4578999999999999999997633457999999 778888877         14699999999754   332  59999


Q ss_pred             EechhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          260 VLKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       260 ~~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ++...-+.-+..  -...+++.+++.|+|   ||.+++.
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~q  205 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCTQ  205 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEC
Confidence            985433322221  135789999999999   8887653

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.71  E-value=1.6e-07  Score=85.45  Aligned_cols=99  Identities=14%  Similarity=0.243  Sum_probs=74.3

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC---CC
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI---PP  255 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~---p~  255 (307)
                      +++.++  ..+..+|||||||+|.++..+++..+. .+++++|. +.+++.|++     ..+++.++.+|..+..   ..
T Consensus        72 ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~  149 (322)
T PRK13943         72 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP  149 (322)
T ss_pred             HHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence            344444  456679999999999999999998864 47899999 788877765     3467999999987632   25


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      +|+|++...++..+        ..+.+.|+|   ||++++..
T Consensus       150 fD~Ii~~~g~~~ip--------~~~~~~Lkp---gG~Lvv~~  180 (322)
T PRK13943        150 YDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPI  180 (322)
T ss_pred             ccEEEECCchHHhH--------HHHHHhcCC---CCEEEEEe
Confidence            99999876655433        345678998   89888743

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.69  E-value=7.7e-08  Score=78.51  Aligned_cols=101  Identities=18%  Similarity=0.161  Sum_probs=75.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC--CC-CccEEEechhh-
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA--IP-PADAVVLKWIL-  265 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~--~p-~~D~i~~~~vL-  265 (307)
                      ..+|||+|||+|.++..|++.-=.-..+++|. +..++.|+.      ..+.|+|++.|+.+|  .+ ++|+|+=...+ 
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D  147 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD  147 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence            34999999999999999998754445789998 667777665      456699999999995  23 58988766654 


Q ss_pred             ----c-cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          266 ----H-DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       266 ----h-~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                          | +-++......+..+.+.|+|   ||.++|.-..+
T Consensus       148 AisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN~  184 (227)
T KOG1271|consen  148 AISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCNF  184 (227)
T ss_pred             eeecCCCCcccceeeehhhHhhccCC---CcEEEEEecCc
Confidence                3 22333335678889999998   89988875443

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.69  E-value=9.7e-07  Score=78.90  Aligned_cols=97  Identities=13%  Similarity=0.179  Sum_probs=77.0

Q ss_pred             CCeEEEecCCch--HHHHHH--HHHCC----CCeEEEecc-hHHHHhchh------------------------------
Q 037127          197 LNSLVDVGGATG--TVAKAI--AKAFP----NLECTDFDL-PHVVNGLES------------------------------  237 (307)
Q Consensus       197 ~~~vlDvGgG~G--~~~~~l--~~~~p----~~~~~~~Dl-~~~~~~a~~------------------------------  237 (307)
                      ..+|...||++|  -|+.++  .+..+    ++++++.|+ +.+++.|++                              
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            478999999999  344433  34332    468999999 788888865                              


Q ss_pred             ------cCCCeEEEecCCCC-CCC---CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          238 ------DLANLKYVGGDMFE-AIP---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       238 ------~~~rv~~~~~d~~~-~~p---~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                            ...+|+|..+|+.+ +.|   .+|+|+|++++.+++++...+++++++++|+|   ||.+++-
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence                  01457999999998 443   59999999999999999889999999999999   8877653

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.68  E-value=6.6e-08  Score=82.38  Aligned_cols=98  Identities=17%  Similarity=0.264  Sum_probs=71.5

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCC-----eEEEecCCCCCC--C-CccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLAN-----LKYVGGDMFEAI--P-PADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~r-----v~~~~~d~~~~~--p-~~D~i~~~~v  264 (307)
                      .+.+.++|||||+|..++.++..|.  ++++.|+ +.+++.+.+ ...+     .++...++.+-.  + .+|+|++..+
T Consensus        32 ~~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa  109 (261)
T KOG3010|consen   32 EGHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA  109 (261)
T ss_pred             CCcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence            3445899999999988888888865  5899999 889999986 1111     122222222211  2 3999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +|-|+-+   ++.+.++++|++  +||.+.|.-+.
T Consensus       110 ~HWFdle---~fy~~~~rvLRk--~Gg~iavW~Y~  139 (261)
T KOG3010|consen  110 VHWFDLE---RFYKEAYRVLRK--DGGLIAVWNYN  139 (261)
T ss_pred             HHhhchH---HHHHHHHHHcCC--CCCEEEEEEcc
Confidence            9977764   889999999987  37788887654

>PRK01581 speE spermidine synthase; Validated

Probab=98.68  E-value=1.4e-07  Score=86.21  Aligned_cols=100  Identities=13%  Similarity=0.084  Sum_probs=76.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------------cCCCeEEEecCCCCC---CC-Ccc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------------DLANLKYVGGDMFEA---IP-PAD  257 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~~---~p-~~D  257 (307)
                      .++++||+||||.|..+..+++..+..+++++|+ +.|++.|++            ..+|++++.+|..+-   .+ .||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            4577999999999999999998655678999999 888998884            257999999998862   22 599


Q ss_pred             EEEechhhcc---CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          258 AVVLKWILHD---WNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       258 ~i~~~~vLh~---~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      +|++...=..   ...--...+++.+++.|+|   ||.+++..
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Qs  268 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQS  268 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEec
Confidence            9998732110   0111235789999999999   88877763

>TIGR00417 speE spermidine synthase

Probab=98.67  E-value=1.4e-07  Score=84.11  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=76.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---CCC-CccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AIP-PADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~p-~~D~i~  260 (307)
                      +++++||+||||+|..+..+++..+..+++++|+ +.+++.+++         ..+|++++.+|.++   ..+ .||+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            4566999999999999999998766678999999 788888776         13689999999865   123 599999


Q ss_pred             echhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 037127          261 LKWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       261 ~~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +...-+.-+...  ...+++.+++.|+|   ||.+++.
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~  185 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ  185 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence            876533222222  35789999999999   8888775

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.66  E-value=1.8e-07  Score=77.53  Aligned_cols=90  Identities=18%  Similarity=0.340  Sum_probs=65.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC--c
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP--A  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~--~  256 (307)
                      +.+++.++  .....+|||||||+|.++..++++  ..+++++|+ +.+++.+++   ..++++++.+|+.+ +.+.  +
T Consensus         3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~   78 (169)
T smart00650        3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP   78 (169)
T ss_pred             HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence            34555555  456678999999999999999998  568999999 778888776   24689999999988 4443  7


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHH
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKE  282 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~  282 (307)
                      |.++.. .-++...    .++.++.+
T Consensus        79 d~vi~n-~Py~~~~----~~i~~~l~   99 (169)
T smart00650       79 YKVVGN-LPYNIST----PILFKLLE   99 (169)
T ss_pred             CEEEEC-CCcccHH----HHHHHHHh
Confidence            877654 4444443    44444444

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=2.9e-07  Score=82.33  Aligned_cols=97  Identities=25%  Similarity=0.391  Sum_probs=74.2

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-CccEEEechhh------
Q 037127          199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-PADAVVLKWIL------  265 (307)
Q Consensus       199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~~D~i~~~~vL------  265 (307)
                      +|||+|||+|..+..+++++|++++++.|+ |..++.|++     ...++.++.+|++++.+ .||+|+++=.-      
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~  192 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP  192 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence            799999999999999999999999999999 888888876     22777788889999766 59988765311      


Q ss_pred             -------cc------CCh----hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          266 -------HD------WND----EECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       266 -------h~------~~~----~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                             .+      +..    +-..+++..+.+.|+|    |.++++|.-
T Consensus       193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~----~g~l~le~g  239 (280)
T COG2890         193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP----GGVLILEIG  239 (280)
T ss_pred             ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC----CcEEEEEEC
Confidence                   01      111    1346788889999998    555666554

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.62  E-value=3.8e-07  Score=79.58  Aligned_cols=96  Identities=15%  Similarity=0.159  Sum_probs=74.7

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---------CCCc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---------IPPA  256 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---------~p~~  256 (307)
                      ..++++|||||||+|+.+..+++..| +.+++.+|. +..++.|++      ..++|+++.+|+.+-         .+.|
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            45678999999999999999998865 679999999 777887776      467999999999762         1259


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      |+|++-.     +.+.-..++..+.+.|+|   ||.|++-+
T Consensus       146 D~VfiDa-----~k~~y~~~~~~~~~ll~~---GG~ii~dn  178 (234)
T PLN02781        146 DFAFVDA-----DKPNYVHFHEQLLKLVKV---GGIIAFDN  178 (234)
T ss_pred             CEEEECC-----CHHHHHHHHHHHHHhcCC---CeEEEEEc
Confidence            9998742     223345788999999998   77655533

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.61  E-value=5.8e-07  Score=82.50  Aligned_cols=101  Identities=15%  Similarity=0.114  Sum_probs=75.3

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~v  264 (307)
                      ..+..+|||+|||+|.++.+.+..  +.+++++|+ +.+++.++.     ..+.+.+..+|+.+ +.+  .+|+|++.-.
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP  257 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP  257 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence            456678999999999999887664  678999999 778887665     22348899999987 443  4899998532


Q ss_pred             hc-------cCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          265 LH-------DWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       265 Lh-------~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      ..       +...+-..++|+.+++.|+|   ||+++++-+.
T Consensus       258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~~  296 (329)
T TIGR01177       258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVPT  296 (329)
T ss_pred             CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEcC
Confidence            21       11112246899999999998   9999887543

This family is found exclusively in the Archaea.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.58  E-value=2.9e-07  Score=78.75  Aligned_cols=100  Identities=15%  Similarity=0.261  Sum_probs=73.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--  254 (307)
                      ..++..++  +.+..+|||||||+|+++.-+++.... -+++.+|. +..++.|++     ...+|+++.+|.....+  
T Consensus        62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~  139 (209)
T PF01135_consen   62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE  139 (209)
T ss_dssp             HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred             HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence            34556666  677889999999999999999988643 46899998 888888877     45689999999887444  


Q ss_pred             -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                       .||.|++.-.....|.        ...+.|++   ||++++.
T Consensus       140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~p  171 (209)
T PF01135_consen  140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAP  171 (209)
T ss_dssp             -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEE
T ss_pred             CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEE
Confidence             5999999887765543        25556898   8998874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.58  E-value=3.3e-07  Score=87.03  Aligned_cols=102  Identities=15%  Similarity=0.176  Sum_probs=76.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC---CC--CccEEEe--
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA---IP--PADAVVL--  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~---~p--~~D~i~~--  261 (307)
                      ..+..+|||+|||+|..+..+++..++.+++++|. +.+++.+++    ..-+++++++|+.+.   .+  .||.|++  
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  321 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA  321 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence            45567999999999999999999988789999999 788888766    333578999999862   22  4999984  


Q ss_pred             --ch--hh-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          262 --KW--IL-------HDWNDEE-------CVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       262 --~~--vL-------h~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                        +.  ++       +.+..++       ..++|+++.+.|+|   ||++++...
T Consensus       322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystc  373 (427)
T PRK10901        322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATC  373 (427)
T ss_pred             CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeC
Confidence              22  11       1122221       24799999999999   999987764

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.57  E-value=6.4e-07  Score=81.84  Aligned_cols=98  Identities=16%  Similarity=0.186  Sum_probs=71.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------------CCCeEEEecCCCCC-----C-
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------------LANLKYVGGDMFEA-----I-  253 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------------~~rv~~~~~d~~~~-----~-  253 (307)
                      +..+|||+|||.|+-+..-.+... -..+++|+ +..++.|++ .              .-...|+.+|.+..     + 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            678999999999998887777643 37899999 667777765 1              12357788888752     1 


Q ss_pred             -C--CccEEEechhhcc-CC-hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          254 -P--PADAVVLKWILHD-WN-DEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       254 -p--~~D~i~~~~vLh~-~~-~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                       +  .||+|-|-..||+ |. .+.+..+|+++...|+|   ||.++..-
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~  186 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTT  186 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEe
Confidence             2  4999999999998 44 45677799999999999   78777653

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.2e-06  Score=74.05  Aligned_cols=99  Identities=12%  Similarity=0.217  Sum_probs=78.9

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---C
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP---P  255 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p---~  255 (307)
                      .++..+.  ++...+||+||||+|+.+.-+++.-.  +++.+|. +..++.|++     ...+|.++++|-..-+|   .
T Consensus        63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP  138 (209)
T COG2518          63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP  138 (209)
T ss_pred             HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence            3445555  67789999999999999999999864  8999998 888888876     34569999999998544   5


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ||.|+..-..-..|+    .    +.+.|++   ||+++|-.-
T Consensus       139 yD~I~Vtaaa~~vP~----~----Ll~QL~~---gGrlv~PvG  170 (209)
T COG2518         139 YDRIIVTAAAPEVPE----A----LLDQLKP---GGRLVIPVG  170 (209)
T ss_pred             cCEEEEeeccCCCCH----H----HHHhccc---CCEEEEEEc
Confidence            999999888876664    2    4456798   999998665

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.54  E-value=1.2e-06  Score=77.41  Aligned_cols=98  Identities=12%  Similarity=0.194  Sum_probs=80.6

Q ss_pred             CCCeEEEecCCch----HHHHHHHHHCC-----CCeEEEecc-hHHHHhchh----------------------------
Q 037127          196 GLNSLVDVGGATG----TVAKAIAKAFP-----NLECTDFDL-PHVVNGLES----------------------------  237 (307)
Q Consensus       196 ~~~~vlDvGgG~G----~~~~~l~~~~p-----~~~~~~~Dl-~~~~~~a~~----------------------------  237 (307)
                      +..+|.-.||++|    ..+..+.+..|     .+++++.|+ ..+++.|+.                            
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            5789999999999    34455567775     478999999 788888864                            


Q ss_pred             ------cCCCeEEEecCCCCCC--C-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          238 ------DLANLKYVGGDMFEAI--P-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       238 ------~~~rv~~~~~d~~~~~--p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                            ....|.|..+|.+++.  + .+|+|+|++||-+|+.+.-.+++++.+..|+|   ||.++|=
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLG  240 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEc
Confidence                  1245899999999854  3 49999999999999999889999999999999   8888873

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.53  E-value=9.7e-07  Score=84.31  Aligned_cols=102  Identities=17%  Similarity=0.239  Sum_probs=75.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---CC-CccEEEec
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---IP-PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~p-~~D~i~~~  262 (307)
                      ..+..+|||+|||+|..+..+++.. ++.+++++|+ +..++.+++     ..+.|+++.+|+.+.   ++ .||+|++.
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D  327 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD  327 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence            4556789999999999999999886 6779999999 777777765     234599999999762   33 59999874


Q ss_pred             hh------hc-------cCChhH-------HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          263 WI------LH-------DWNDEE-------CVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       263 ~v------Lh-------~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      -.      +.       .++..+       ...+|+++.+.|+|   ||+++....
T Consensus       328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystc  380 (444)
T PRK14902        328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTC  380 (444)
T ss_pred             CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcC
Confidence            21      11       122222       24689999999999   899886543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.53  E-value=1e-06  Score=84.21  Aligned_cols=104  Identities=17%  Similarity=0.253  Sum_probs=77.0

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEec--
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLK--  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~--  262 (307)
                      .....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++     ..++|+++.+|+.+..+  .||+|++-  
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P  327 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP  327 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence            34567999999999999999988764 458999999 788877765     33579999999987323  49999862  


Q ss_pred             --h--hh-------ccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          263 --W--IL-------HDWNDEEC-------VKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       263 --~--vL-------h~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                        .  ++       +.++.++.       .++|+++.+.|+|   ||+++......
T Consensus       328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~  380 (445)
T PRK14904        328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSI  380 (445)
T ss_pred             CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCC
Confidence              1  11       22333322       3689999999999   89888877444

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=3.7e-07  Score=81.37  Aligned_cols=95  Identities=23%  Similarity=0.322  Sum_probs=66.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeE----EEecCCCC-CC-CCccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLK----YVGGDMFE-AI-PPADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~----~~~~d~~~-~~-p~~D~i~~~~v  264 (307)
                      ..++.++||+|||+|.++++.++... .+++++|+ |..++.+++  ..+.|.    ....+... +. ..||+|+.+- 
T Consensus       160 ~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-  237 (300)
T COG2264         160 LKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-  237 (300)
T ss_pred             hcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-
Confidence            35788999999999999999999743 47999999 777777776  333333    22233333 12 1599876543 


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      |-   + -.+++...+++.++|   ||++++.-
T Consensus       238 LA---~-vl~~La~~~~~~lkp---gg~lIlSG  263 (300)
T COG2264         238 LA---E-VLVELAPDIKRLLKP---GGRLILSG  263 (300)
T ss_pred             hH---H-HHHHHHHHHHHHcCC---CceEEEEe
Confidence            42   1 135888999999999   77777654

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.52  E-value=8.1e-07  Score=84.37  Aligned_cols=105  Identities=14%  Similarity=0.160  Sum_probs=78.0

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-C--C--CccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-I--P--PADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-~--p--~~D~i~~  261 (307)
                      ..+..+|||+|||+|..+..+++..++.+++++|. +..++.+++      ...++.+..+|.... .  +  .||.|++
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence            45568999999999999999999988789999999 778877765      122455577787652 1  2  4999985


Q ss_pred             c------hhhccCCh-------hH-------HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          262 K------WILHDWND-------EE-------CVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       262 ~------~vLh~~~~-------~~-------~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      .      .+++..|+       ++       -.++|+++.+.|+|   ||++++....+.
T Consensus       316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~  372 (426)
T TIGR00563       316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVL  372 (426)
T ss_pred             cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence            2      35554433       11       25799999999999   999998866553

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK03612 spermidine synthase; Provisional

Probab=98.51  E-value=5.5e-07  Score=87.48  Aligned_cols=98  Identities=17%  Similarity=0.284  Sum_probs=75.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh------------cCCCeEEEecCCCC---CCC-Cc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES------------DLANLKYVGGDMFE---AIP-PA  256 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~---~~p-~~  256 (307)
                      +++++|||||||+|..+.++++ +|. .+++++|+ |.+++.+++            ..+|++++.+|.++   ..+ .|
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            4578999999999999999997 565 69999999 889998875            13699999999877   223 59


Q ss_pred             cEEEechhhccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          257 DAVVLKWILHDWNDE---ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       257 D~i~~~~vLh~~~~~---~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      |+|++...-+..+..   -...+++++++.|+|   ||.+++.
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~  414 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ  414 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence            999987443221111   124689999999999   8887764

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.51  E-value=1.1e-06  Score=74.48  Aligned_cols=95  Identities=17%  Similarity=0.359  Sum_probs=69.2

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC----CC--CccEEEechhhc
Q 037127          199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA----IP--PADAVVLKWILH  266 (307)
Q Consensus       199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~----~p--~~D~i~~~~vLh  266 (307)
                      .+||||||.|.++..+++.+|+..++|+|+ ...+..+.+     ...++.++++|+..-    ++  ..|-|.+...=.
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP   99 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP   99 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence            899999999999999999999999999999 555554433     678999999998871    23  366665554332


Q ss_pred             cCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          267 DWNDEE-------CVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       267 ~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                       |+...       ...+|..+++.|+|   ||.|.+..
T Consensus       100 -WpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T  133 (195)
T PF02390_consen  100 -WPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT  133 (195)
T ss_dssp             ---SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             -CcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence             44321       25799999999999   89887754

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PHA03412 putative methyltransferase; Provisional

Probab=98.50  E-value=9.7e-07  Score=76.13  Aligned_cols=90  Identities=12%  Similarity=0.111  Sum_probs=69.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHC---CCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC-CccEEEechhhccCCh
Q 037127          197 LNSLVDVGGATGTVAKAIAKAF---PNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP-PADAVVLKWILHDWND  270 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~~~  270 (307)
                      ..+|||+|||+|.++..++++.   +..+++++|+ +.+++.|++...++.++.+|+.. +.. .||+|+++=..+....
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~  129 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT  129 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence            5699999999999999999875   3578999999 88888888755679999999986 333 5999988765553221


Q ss_pred             ----------hHHHHHHHHHHHhccC
Q 037127          271 ----------EECVKILKKCKEAITS  286 (307)
Q Consensus       271 ----------~~~~~~L~~~~~~L~p  286 (307)
                                .-...+++++.+.+++
T Consensus       130 ~d~~ar~~g~~~~~~li~~A~~Ll~~  155 (241)
T PHA03412        130 SDFKGKYTGAEFEYKVIERASQIARQ  155 (241)
T ss_pred             cccCCcccccHHHHHHHHHHHHHcCC
Confidence                      1135688999986676

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.50  E-value=3.9e-07  Score=74.79  Aligned_cols=74  Identities=18%  Similarity=0.320  Sum_probs=62.0

Q ss_pred             EEecc-hHHHHhchh---c-----CCCeEEEecCCCC-CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCc
Q 037127          224 TDFDL-PHVVNGLES---D-----LANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIG  291 (307)
Q Consensus       224 ~~~Dl-~~~~~~a~~---~-----~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg  291 (307)
                      +++|. +.|++.|++   .     ..+|+|+.+|+.+ +++  .+|++++..++|++++.  ...|++++++|||   ||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG   75 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS   75 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence            37898 889988864   1     3479999999987 555  39999999999999875  5899999999999   99


Q ss_pred             EEEEEeeecCC
Q 037127          292 KVIIIDMMREN  302 (307)
Q Consensus       292 ~lli~e~~~~~  302 (307)
                      +++|.|...++
T Consensus        76 ~l~i~d~~~~~   86 (160)
T PLN02232         76 RVSILDFNKSN   86 (160)
T ss_pred             EEEEEECCCCC
Confidence            99999987654

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.46  E-value=1.5e-06  Score=72.19  Aligned_cols=103  Identities=20%  Similarity=0.203  Sum_probs=69.5

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh--------cCCCeEEEecCCCCCC------C-CccE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES--------DLANLKYVGGDMFEAI------P-PADA  258 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~~~------p-~~D~  258 (307)
                      ..+.++||+||||+|..+..+++.++..+++.-|.+++++.++.        ...++++...|..++.      + .||+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            45678999999999999999999877789999999777776665        2578899998887632      2 4999


Q ss_pred             EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      |+.+-++|+  ++....+++.+.+.+++   ++.+++.-..+.
T Consensus       123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R~  160 (173)
T PF10294_consen  123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRRR  160 (173)
T ss_dssp             EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S-
T ss_pred             EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEec
Confidence            999999984  55667899999999998   677777766653

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.46  E-value=7.2e-07  Score=80.07  Aligned_cols=93  Identities=18%  Similarity=0.226  Sum_probs=64.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC--CCccEEEechhh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI--PPADAVVLKWIL  265 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~--p~~D~i~~~~vL  265 (307)
                      .+..+|||||||+|.+++..++... -+++++|+ |..++.+++      ..+++.+.   ...+.  ..||+|+.+-.-
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~---~~~~~~~~~~dlvvANI~~  235 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS---LSEDLVEGKFDLVVANILA  235 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES---CTSCTCCS-EEEEEEES-H
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE---EecccccccCCEEEECCCH
Confidence            4567999999999999999999743 47999999 777787776      45577653   12222  359988754332


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +     -...++..+.+.|+|   ||++++.-..
T Consensus       236 ~-----vL~~l~~~~~~~l~~---~G~lIlSGIl  261 (295)
T PF06325_consen  236 D-----VLLELAPDIASLLKP---GGYLILSGIL  261 (295)
T ss_dssp             H-----HHHHHHHHCHHHEEE---EEEEEEEEEE
T ss_pred             H-----HHHHHHHHHHHhhCC---CCEEEEcccc
Confidence            2     236788888999998   7777765433

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=3.3e-06  Score=73.01  Aligned_cols=106  Identities=18%  Similarity=0.254  Sum_probs=87.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHH-HCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-CC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAK-AFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-IP  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-~p  254 (307)
                      ..|+....  .....+|+|.|-|+|.++..|++ ..|.-+++.+|. ++..+.|++      ..++|++..+|+.+. .+
T Consensus        84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~  161 (256)
T COG2519          84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE  161 (256)
T ss_pred             HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence            44555555  78899999999999999999997 567789999999 788888876      577899999999984 33


Q ss_pred             -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                       .+|++++     |+|++-  ..|.+++++|+|   ||.+++.-++.+
T Consensus       162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y~P~ve  199 (256)
T COG2519         162 EDVDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVYSPTVE  199 (256)
T ss_pred             cccCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEEcCCHH
Confidence             5898876     567763  789999999999   999998877643

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.41  E-value=3e-06  Score=75.37  Aligned_cols=104  Identities=15%  Similarity=0.236  Sum_probs=75.5

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CCCccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IPPADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p~~D~i~~~~  263 (307)
                      ..+..+|||+|||+|..+..+++..++ .+++++|+ +..++.+++     ...+|++...|... +  .+.||.|++.-
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~  148 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA  148 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence            345678999999999999999988753 58999999 777777765     23568999999765 2  23599998631


Q ss_pred             ------hh-------ccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          264 ------IL-------HDWNDEEC-------VKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       264 ------vL-------h~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                            ++       ..|..++.       .++|+++.+.|+|   ||+++.....+
T Consensus       149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~  202 (264)
T TIGR00446       149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSL  202 (264)
T ss_pred             CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence                  11       12443322       4699999999998   89887665433

>PLN02672 methionine S-methyltransferase

Probab=98.39  E-value=1.6e-06  Score=89.53  Aligned_cols=66  Identities=18%  Similarity=0.239  Sum_probs=55.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---c------------------CCCeEEEecCCCCCCC
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---D------------------LANLKYVGGDMFEAIP  254 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~------------------~~rv~~~~~d~~~~~p  254 (307)
                      ..+|||||||+|..+..+++.+|+.+++++|+ +.+++.|+.   .                  .+||+|+.+|+++..+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            46899999999999999999999999999999 888888755   1                  1489999999998543


Q ss_pred             ----CccEEEec
Q 037127          255 ----PADAVVLK  262 (307)
Q Consensus       255 ----~~D~i~~~  262 (307)
                          .+|+|+.+
T Consensus       199 ~~~~~fDlIVSN  210 (1082)
T PLN02672        199 DNNIELDRIVGC  210 (1082)
T ss_pred             ccCCceEEEEEC
Confidence                38988764

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.39  E-value=2.2e-06  Score=72.99  Aligned_cols=112  Identities=13%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--------------cCCCeEEEecC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--------------DLANLKYVGGD  248 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------------~~~rv~~~~~d  248 (307)
                      ..+++.+.  +.....++|||||.|......+-.++--+++|+++ +...+.|..              ...++++..+|
T Consensus        32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            44556565  56678999999999999998887776556999999 555444432              25678999999


Q ss_pred             CCCC------CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          249 MFEA------IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       249 ~~~~------~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      |.++      +.++|+|++++..  |+++- ..-|.+....||+   |.+|+-...+.+..
T Consensus       110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~l-~~~L~~~~~~lk~---G~~IIs~~~~~~~~  164 (205)
T PF08123_consen  110 FLDPDFVKDIWSDADVVFVNNTC--FDPDL-NLALAELLLELKP---GARIISTKPFCPRR  164 (205)
T ss_dssp             TTTHHHHHHHGHC-SEEEE--TT--T-HHH-HHHHHHHHTTS-T---T-EEEESS-SS-TT
T ss_pred             ccccHhHhhhhcCCCEEEEeccc--cCHHH-HHHHHHHHhcCCC---CCEEEECCCcCCCC
Confidence            9983      2369999999986  56654 4445777778888   77877766665543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.39  E-value=3.1e-06  Score=80.63  Aligned_cols=104  Identities=18%  Similarity=0.177  Sum_probs=77.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC-----C-C-CccEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA-----I-P-PADAV  259 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~-----~-p-~~D~i  259 (307)
                      ..+..+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++     ...+|+++++|..+.     . + .||.|
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence            45567999999999999999998864 468999999 778877765     335699999998762     1 1 48999


Q ss_pred             Eec------hhhccCCh-------hH-------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          260 VLK------WILHDWND-------EE-------CVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       260 ~~~------~vLh~~~~-------~~-------~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ++.      .+++..++       ++       -.++|+++.+.|+|   ||+++.....+
T Consensus       330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi  387 (434)
T PRK14901        330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL  387 (434)
T ss_pred             EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence            863      24443332       22       25889999999999   99988776443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.39  E-value=3.2e-06  Score=80.26  Aligned_cols=104  Identities=15%  Similarity=0.172  Sum_probs=76.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC-CccEEEec
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP-PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p-~~D~i~~~  262 (307)
                      ..+..+|||+|||+|..+..+++.. ++.+++++|+ +..++.+++     ..+++++..+|..+ +  .+ .||.|++.
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD  314 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence            4556799999999999999999886 4579999999 788887765     23468999999876 2  12 49999862


Q ss_pred             h------hh-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          263 W------IL-------HDWNDEE-------CVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       263 ~------vL-------h~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      -      ++       +.++.++       -.++|.++.+.|+|   ||+++.....+
T Consensus       315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~  369 (431)
T PRK14903        315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTV  369 (431)
T ss_pred             CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence            1      12       2233222       25789999999999   88876655544

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.39  E-value=2.7e-06  Score=75.36  Aligned_cols=83  Identities=16%  Similarity=0.300  Sum_probs=63.5

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCCcc
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPPAD  257 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~~D  257 (307)
                      .+.+++.+.  ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++   ..++++++.+|+.+ +++.+|
T Consensus        18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d   93 (258)
T PRK14896         18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN   93 (258)
T ss_pred             HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence            345555554  4566799999999999999999983  58999999 778888776   24689999999988 666788


Q ss_pred             EEEechhhccCCh
Q 037127          258 AVVLKWILHDWND  270 (307)
Q Consensus       258 ~i~~~~vLh~~~~  270 (307)
                      .|+.+-. |+.+.
T Consensus        94 ~Vv~NlP-y~i~s  105 (258)
T PRK14896         94 KVVSNLP-YQISS  105 (258)
T ss_pred             EEEEcCC-cccCc
Confidence            7766544 44443

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.37  E-value=2.6e-06  Score=75.29  Aligned_cols=92  Identities=14%  Similarity=0.268  Sum_probs=66.1

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCCcc
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPPAD  257 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~~D  257 (307)
                      ...++..++  ..+..+|||||||+|.++..++++.+  +++++|. +.+++.+++   ..++++++.+|+.+ +.+.+|
T Consensus        18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d   93 (253)
T TIGR00755        18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP   93 (253)
T ss_pred             HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence            345555555  55678999999999999999999986  4888998 778877776   24789999999988 444455


Q ss_pred             --EEEechhhccCChhHHHHHHHHHHH
Q 037127          258 --AVVLKWILHDWNDEECVKILKKCKE  282 (307)
Q Consensus       258 --~i~~~~vLh~~~~~~~~~~L~~~~~  282 (307)
                        .+++++.-++++.    .++.++..
T Consensus        94 ~~~~vvsNlPy~i~~----~il~~ll~  116 (253)
T TIGR00755        94 KQLKVVSNLPYNISS----PLIFKLLE  116 (253)
T ss_pred             CcceEEEcCChhhHH----HHHHHHhc
Confidence              3455555454554    45555543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.37  E-value=8.9e-07  Score=75.50  Aligned_cols=98  Identities=20%  Similarity=0.282  Sum_probs=75.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-------C--CCc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-------I--PPA  256 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-------~--p~~  256 (307)
                      ..++++||+||+++|+.+..+++..| +.+++.+|. |...+.|++      ..+||+++.+|..+-       .  ..|
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF  122 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence            45688999999999999999999987 589999999 777777776      468999999998751       1  259


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      |+|++-.     +..+-...+..+.+.|+|    |.++|+|.++
T Consensus       123 D~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l  157 (205)
T PF01596_consen  123 DFVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVL  157 (205)
T ss_dssp             EEEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTT
T ss_pred             eEEEEcc-----cccchhhHHHHHhhhccC----CeEEEEcccc
Confidence            9998865     333456788889999998    5566666554

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.36  E-value=2.5e-06  Score=75.72  Aligned_cols=96  Identities=19%  Similarity=0.249  Sum_probs=73.8

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecch-HHHHhchh----c---C----CCeEEEecCCCCC---------C
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLP-HVVNGLES----D---L----ANLKYVGGDMFEA---------I  253 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~-~~~~~a~~----~---~----~rv~~~~~d~~~~---------~  253 (307)
                      ++...++|+|||.|+-++.--++.- -..+++|+. ..+++|++    +   .    =.+.|+.+|.+..         .
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d  194 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD  194 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence            4566789999999999887777632 268999994 45788876    1   1    1368899998761         2


Q ss_pred             CCccEEEechhhcc-CC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 037127          254 PPADAVVLKWILHD-WN-DEECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       254 p~~D~i~~~~vLh~-~~-~~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      |.+|+|-|-.++|+ |. .+.+...|+++++.|+|   ||.++
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FI  234 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFI  234 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEE
Confidence            34999999999998 65 45788899999999999   77665

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.34  E-value=7.3e-06  Score=66.21  Aligned_cols=115  Identities=18%  Similarity=0.210  Sum_probs=92.6

Q ss_pred             hhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC------
Q 037127          180 RLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE------  251 (307)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~------  251 (307)
                      .+.++.+.+.++  +....-|+++|.|+|.++.+++++. +.-..+.++. ++......+..+.++++.||.+.      
T Consensus        34 s~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~  111 (194)
T COG3963          34 SILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG  111 (194)
T ss_pred             HHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence            344566667777  5677789999999999999998764 4556788887 77777776666777899999886      


Q ss_pred             CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          252 AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       252 ~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +.+  .+|.+++.-.+-.+|-...+++|+++..-|++   ||.++-+.+-
T Consensus       112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg  158 (194)
T COG3963         112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG  158 (194)
T ss_pred             hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence            223  49999999999999999999999999999998   8888877665

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.34  E-value=2.3e-06  Score=76.38  Aligned_cols=89  Identities=12%  Similarity=0.194  Sum_probs=63.0

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCCCc--c
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIPPA--D  257 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p~~--D  257 (307)
                      ..+++.++  .....+|||||||+|.++..+++..+  +++++|. +.+++.+++  ..++++++.+|+.+ +.+..  +
T Consensus        32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~  107 (272)
T PRK00274         32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL  107 (272)
T ss_pred             HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence            44555554  45667899999999999999999975  7899999 888888876  33789999999987 44433  4


Q ss_pred             EEEechhhccCChhHHHHHHHHHH
Q 037127          258 AVVLKWILHDWNDEECVKILKKCK  281 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~~~~~L~~~~  281 (307)
                      .++ ++.=++.+.    .++.++.
T Consensus       108 ~vv-~NlPY~iss----~ii~~~l  126 (272)
T PRK00274        108 KVV-ANLPYNITT----PLLFHLL  126 (272)
T ss_pred             eEE-EeCCccchH----HHHHHHH
Confidence            444 443333332    4454444

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.33  E-value=8.1e-06  Score=71.61  Aligned_cols=103  Identities=22%  Similarity=0.354  Sum_probs=67.3

Q ss_pred             CCCeEEEecCCc---hHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCC--eEEEecCCCCC-----CC-------
Q 037127          196 GLNSLVDVGGAT---GTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLAN--LKYVGGDMFEA-----IP-------  254 (307)
Q Consensus       196 ~~~~vlDvGgG~---G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~r--v~~~~~d~~~~-----~p-------  254 (307)
                      +...+||||||-   |..-....+..|+.+++-+|. |-++.+++.   ..++  ..++.+|+.++     .|       
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD  147 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD  147 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence            678999999993   344444456689999999999 888888887   2334  89999999983     12       


Q ss_pred             --CccEEEechhhccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          255 --PADAVVLKWILHDWND-EECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       255 --~~D~i~~~~vLh~~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                        ..=.+++..+||+.+| ++...+++.++++|.|   |+.|.|....-.
T Consensus       148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d  194 (267)
T PF04672_consen  148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDD  194 (267)
T ss_dssp             TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-T
T ss_pred             CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCC
Confidence              2456899999999987 6788999999999999   888888877643

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.33  E-value=2.4e-06  Score=72.03  Aligned_cols=95  Identities=13%  Similarity=0.238  Sum_probs=69.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCCCCC----CccEEEechhhc---
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFEAIP----PADAVVLKWILH---  266 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~~~p----~~D~i~~~~vLh---  266 (307)
                      .+.-|||||||+|..+..|...  +...+++|+ |+|++.|.+ ..+ -.++-+|+-+..|    .||-+|....+.   
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~GlpfrpGtFDg~ISISAvQWLc  126 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-GDLILCDMGEGLPFRPGTFDGVISISAVQWLC  126 (270)
T ss_pred             CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-cCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence            3778999999999999888775  578999999 999999885 111 3466788888433    388877665542   


Q ss_pred             ------cCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          267 ------DWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       267 ------~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                            +-|......++..++..|+.   |++-++.
T Consensus       127 nA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~Q  159 (270)
T KOG1541|consen  127 NADKSLHVPKKRLLRFFGTLYSCLKR---GARAVLQ  159 (270)
T ss_pred             ccCccccChHHHHHHHhhhhhhhhcc---CceeEEE
Confidence                  22344556788889999998   7776653

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.29  E-value=4.6e-06  Score=79.29  Aligned_cols=131  Identities=18%  Similarity=0.210  Sum_probs=80.3

Q ss_pred             CccccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC----CCCeEEEecc-hH
Q 037127          156 SFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF----PNLECTDFDL-PH  230 (307)
Q Consensus       156 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~Dl-~~  230 (307)
                      ..|+.+++++...+.|.+++...    .....+.-. ...+.+.|+|||||+|-++...+++.    ...+++.++- |.
T Consensus       151 ~tYe~fE~D~vKY~~Ye~AI~~a----l~D~~~~~~-~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~  225 (448)
T PF05185_consen  151 QTYEVFEKDPVKYDQYERAIEEA----LKDRVRKNS-YSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN  225 (448)
T ss_dssp             HHHHHHCC-HHHHHHHHHHHHHH----HHHHHTTS--SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred             ccHhhHhcCHHHHHHHHHHHHHH----HHhhhhhcc-ccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence            44777888888888888776431    111222111 01136789999999999987766553    4578999998 43


Q ss_pred             HHHhch----h--cCCCeEEEecCCCC-CCC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127          231 VVNGLE----S--DLANLKYVGGDMFE-AIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       231 ~~~~a~----~--~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      .+...+    .  ..++|+++.+|+.+ ..| .+|+|+.=..-..-..+-....|..+.+.|+|   +|.++
T Consensus       226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~I  294 (448)
T PF05185_consen  226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGIMI  294 (448)
T ss_dssp             HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEEEE
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCEEe
Confidence            332222    2  57899999999999 566 59988655544333334445568888889998   65543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.28  E-value=1e-06  Score=74.69  Aligned_cols=110  Identities=14%  Similarity=0.101  Sum_probs=77.7

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEe-cCCCC--CCCCccE
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVG-GDMFE--AIPPADA  258 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~-~d~~~--~~p~~D~  258 (307)
                      .++...+  ...++++||+|||||..+..|-..-  -+.+++|+ ..|++.|.+  ..+.+..-. .+|..  ....+|+
T Consensus       116 emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL  191 (287)
T COG4976         116 EMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL  191 (287)
T ss_pred             HHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence            3444444  3458999999999999999998774  35788999 778988875  222211111 12443  2235999


Q ss_pred             EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      |...-||.+..+=  ..++--+...|+|   ||.+.+.-...+++
T Consensus       192 i~AaDVl~YlG~L--e~~~~~aa~~L~~---gGlfaFSvE~l~~~  231 (287)
T COG4976         192 IVAADVLPYLGAL--EGLFAGAAGLLAP---GGLFAFSVETLPDD  231 (287)
T ss_pred             hhhhhHHHhhcch--hhHHHHHHHhcCC---CceEEEEecccCCC
Confidence            9999999998875  4889999999998   88877665555544

>PRK04148 hypothetical protein; Provisional

Probab=98.25  E-value=1.6e-05  Score=62.74  Aligned_cols=81  Identities=15%  Similarity=0.163  Sum_probs=62.8

Q ss_pred             CCCeEEEecCCchH-HHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC----CccEEEechhhccCC
Q 037127          196 GLNSLVDVGGATGT-VAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP----PADAVVLKWILHDWN  269 (307)
Q Consensus       196 ~~~~vlDvGgG~G~-~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p----~~D~i~~~~vLh~~~  269 (307)
                      +..+++|||||+|. ++..|.+.  +..++++|. |..++.+++  ..++++.+|+|++-+    ++|+|...+     |
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~~~~y~~a~liysir-----p   86 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPNLEIYKNAKLIYSIR-----P   86 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCCHHHHhcCCEEEEeC-----C
Confidence            45789999999996 77777765  679999999 777777763  357899999999644    589887765     5


Q ss_pred             hhHHHHHHHHHHHhcc
Q 037127          270 DEECVKILKKCKEAIT  285 (307)
Q Consensus       270 ~~~~~~~L~~~~~~L~  285 (307)
                      ..|.+.-+.++++.+.
T Consensus        87 p~el~~~~~~la~~~~  102 (134)
T PRK04148         87 PRDLQPFILELAKKIN  102 (134)
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            5666777777877765

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=4.2e-06  Score=70.04  Aligned_cols=98  Identities=17%  Similarity=0.272  Sum_probs=73.2

Q ss_pred             HHhccccccCCCeEEEecCCchHHHHHHHHHC--CCCeEEEecc-hHHHHhchh---------------cCCCeEEEecC
Q 037127          187 IHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF--PNLECTDFDL-PHVVNGLES---------------DLANLKYVGGD  248 (307)
Q Consensus       187 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~---------------~~~rv~~~~~d  248 (307)
                      ++.++..+.+..++||||+|+|+++..++..-  ++...+++|. |++++.+.+               ...++.++.||
T Consensus        73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD  152 (237)
T KOG1661|consen   73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD  152 (237)
T ss_pred             HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC
Confidence            33333345677899999999999999888554  3333489998 998888765               24678999999


Q ss_pred             CCCC---CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          249 MFEA---IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       249 ~~~~---~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      ...-   ..+||.|.+.-        .+.++.+++...|++   ||+++|
T Consensus       153 gr~g~~e~a~YDaIhvGA--------aa~~~pq~l~dqL~~---gGrlli  191 (237)
T KOG1661|consen  153 GRKGYAEQAPYDAIHVGA--------AASELPQELLDQLKP---GGRLLI  191 (237)
T ss_pred             ccccCCccCCcceEEEcc--------CccccHHHHHHhhcc---CCeEEE
Confidence            9883   33699998872        234667788888898   898887

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.23  E-value=1.2e-05  Score=67.63  Aligned_cols=120  Identities=16%  Similarity=0.223  Sum_probs=67.6

Q ss_pred             ccCCcHHHHHHHHHHH----hchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhch
Q 037127          161 AGDEPKINNFFNEAMA----SDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLE  236 (307)
Q Consensus       161 ~~~~~~~~~~f~~~m~----~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~  236 (307)
                      +..+|+....|++...    .+..-..+.+++.+. ..++...|.|+|||.+..+..+.+   ..++.-+|+-..     
T Consensus        34 f~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-----  104 (219)
T PF05148_consen   34 FQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-----  104 (219)
T ss_dssp             HHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----
T ss_pred             HHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-----
Confidence            3456665555555443    332222455555443 123456899999999999966542   357899997321     


Q ss_pred             hcCCCeEEEecCCCC-CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          237 SDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       237 ~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                        .++  ....|+-+ |++  .+|++++.-.|--  .+ ...+|+++.|+||+   ||.+.|.|-.
T Consensus       105 --n~~--Vtacdia~vPL~~~svDv~VfcLSLMG--Tn-~~~fi~EA~RvLK~---~G~L~IAEV~  160 (219)
T PF05148_consen  105 --NPR--VTACDIANVPLEDESVDVAVFCLSLMG--TN-WPDFIREANRVLKP---GGILKIAEVK  160 (219)
T ss_dssp             --STT--EEES-TTS-S--TT-EEEEEEES---S--S--HHHHHHHHHHHEEE---EEEEEEEEEG
T ss_pred             --CCC--EEEecCccCcCCCCceeEEEEEhhhhC--CC-cHHHHHHHHheecc---CcEEEEEEec
Confidence              233  45688866 665  3899988877742  21 36899999999999   8999998854

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.23  E-value=7.7e-06  Score=73.66  Aligned_cols=89  Identities=17%  Similarity=0.340  Sum_probs=66.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCCC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPP  255 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~  255 (307)
                      ..+++...  .....+|||||||+|.++..+++..  .+++++|+ +.+++.+++      ..++++++.+|+.+ +.+.
T Consensus        26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~  101 (294)
T PTZ00338         26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY  101 (294)
T ss_pred             HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence            44555554  5566789999999999999999974  47899999 778887775      24789999999988 5567


Q ss_pred             ccEEEechhhccCChhHHHHHH
Q 037127          256 ADAVVLKWILHDWNDEECVKIL  277 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L  277 (307)
                      +|+++ ++.=++++.+...++|
T Consensus       102 ~d~Vv-aNlPY~Istpil~~ll  122 (294)
T PTZ00338        102 FDVCV-ANVPYQISSPLVFKLL  122 (294)
T ss_pred             cCEEE-ecCCcccCcHHHHHHH
Confidence            88666 4555556665444444

>PLN02476 O-methyltransferase

Probab=98.23  E-value=1.2e-05  Score=71.42  Aligned_cols=99  Identities=12%  Similarity=0.117  Sum_probs=76.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C------CCc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I------PPA  256 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~------p~~  256 (307)
                      ..++++|||||+++|+.+..+++..| +-+++.+|. ++..+.|++      ..++|+++.||..+.   .      ..|
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            45688999999999999999999875 567899999 777777766      567999999998762   1      259


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      |++++-.     +...-..++..+.+.|+|   ||.|++=+..+
T Consensus       196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GGvIV~DNvL~  231 (278)
T PLN02476        196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GGVIVMDNVLW  231 (278)
T ss_pred             CEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEecCcc
Confidence            9888754     344457889999999998   66655444433

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.20  E-value=9.6e-06  Score=69.42  Aligned_cols=100  Identities=17%  Similarity=0.228  Sum_probs=80.3

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEe-cCCCC--C---CCCccEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVG-GDMFE--A---IPPADAV  259 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~-~d~~~--~---~p~~D~i  259 (307)
                      ..++++||+||.+.|+.+..++...| +.+.+.+|. |+..+.|++      ..++|+++. +|..+  .   .+.||+|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            46789999999999999999999999 788999999 888888887      578899988 58766  2   2359999


Q ss_pred             EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ++-.     ....-..+|..+.+.|+|    |.|+|+|.++..
T Consensus       137 FIDa-----dK~~yp~~le~~~~lLr~----GGliv~DNvl~~  170 (219)
T COG4122         137 FIDA-----DKADYPEYLERALPLLRP----GGLIVADNVLFG  170 (219)
T ss_pred             EEeC-----ChhhCHHHHHHHHHHhCC----CcEEEEeecccC
Confidence            8754     223335889999999998    667777776654

>PLN02823 spermine synthase

Probab=98.20  E-value=9.4e-06  Score=74.33  Aligned_cols=98  Identities=12%  Similarity=0.085  Sum_probs=74.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCCC---CC-CccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFEA---IP-PADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~~---~p-~~D~i~  260 (307)
                      .++++||.||||.|..+.++++..+..+++++|+ |.+++.+++         ..+|++++.+|.++-   .+ .||+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            3567999999999999999999766678999999 889999887         147999999998872   22 599999


Q ss_pred             echhhccCCh--h---HHHHHHH-HHHHhccCCCCCcEEEEE
Q 037127          261 LKWILHDWND--E---ECVKILK-KCKEAITSNSKIGKVIII  296 (307)
Q Consensus       261 ~~~vLh~~~~--~---~~~~~L~-~~~~~L~p~~~gg~lli~  296 (307)
                      +--. ..+..  .   -...+++ .+++.|+|   ||.+++.
T Consensus       182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~q  219 (336)
T PLN02823        182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVTQ  219 (336)
T ss_pred             ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEEe
Confidence            8731 11100  0   0246787 89999998   7776553

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=8.5e-06  Score=67.34  Aligned_cols=68  Identities=19%  Similarity=0.228  Sum_probs=54.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCCCccEEEech
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIPPADAVVLKW  263 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p~~D~i~~~~  263 (307)
                      -..++|+|+|||||.++...+-..| .+++++|+ |+.++.+++    ...+|.|.+.|+.+-...+|.++++=
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNP  116 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNP  116 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECC
Confidence            3467899999999999999888765 48999999 888888876    56799999999987444466665543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.19  E-value=2.4e-05  Score=69.91  Aligned_cols=103  Identities=17%  Similarity=0.255  Sum_probs=73.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchhc---CC--CeEEEecCCCC---CCCCccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLESD---LA--NLKYVGGDMFE---AIPPADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~~---~~--rv~~~~~d~~~---~~p~~D~i~~~~v  264 (307)
                      -.+.+|||+|+|+|..+-++...++.+ +++++|. +.+++.++..   ..  +......++..   +++..|+|+++++
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~  111 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV  111 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence            346799999999999998888888854 5889998 7777776651   11  11111122221   3445799999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      |-..++++...+++++-+.+.     +.|+|+|+-.+.
T Consensus       112 L~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~  144 (274)
T PF09243_consen  112 LNELPSAARAELVRSLWNKTA-----PVLVLVEPGTPA  144 (274)
T ss_pred             hhcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChH
Confidence            999988777778888877665     499999986553

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.15  E-value=1.4e-05  Score=71.32  Aligned_cols=98  Identities=14%  Similarity=0.209  Sum_probs=78.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----c----CCCeEEEecCCCC---CCC-CccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----D----LANLKYVGGDMFE---AIP-PADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~----~~rv~~~~~d~~~---~~p-~~D~i~  260 (307)
                      +.+++||-||||.|..+.++++..+--+++.+|+ |.|++.+++     .    .+|++++.+|..+   ..+ .||+|+
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi  154 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII  154 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence            3457999999999999999999988789999999 899999987     2    5899999999887   344 599998


Q ss_pred             echhhccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          261 LKWILHDWNDE---ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       261 ~~~vLh~~~~~---~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +-..=.. ...   -...+++.|+++|++   +|.++..
T Consensus       155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q  189 (282)
T COG0421         155 VDSTDPV-GPAEALFTEEFYEGCRRALKE---DGIFVAQ  189 (282)
T ss_pred             EcCCCCC-CcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence            8654331 110   125899999999998   7777766

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.15  E-value=1.6e-05  Score=69.20  Aligned_cols=91  Identities=19%  Similarity=0.315  Sum_probs=67.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC-CccEEEechhhccCChhHH
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP-PADAVVLKWILHDWNDEEC  273 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh~~~~~~~  273 (307)
                      +..++||||.|.|..+..++..+.+  +++-+. +.|....++  ..++.+..+=+...+ .||+|.|-|+|-.-.++  
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~--kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--  167 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK--KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--  167 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh--CCCeEEehhhhhccCCceEEEeehhhhhccCCH--
Confidence            4578999999999999999999876  566687 667666663  233343333233233 59999999999766655  


Q ss_pred             HHHHHHHHHhccCCCCCcEEEE
Q 037127          274 VKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       274 ~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      ..+|+.++++|+|   +|++++
T Consensus       168 ~~LL~~i~~~l~p---~G~lil  186 (265)
T PF05219_consen  168 LTLLRDIRRALKP---NGRLIL  186 (265)
T ss_pred             HHHHHHHHHHhCC---CCEEEE
Confidence            5999999999999   676654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.15  E-value=7.1e-06  Score=72.09  Aligned_cols=100  Identities=18%  Similarity=0.261  Sum_probs=75.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---C-CC-CccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---A-IP-PADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~-~p-~~D~i  259 (307)
                      +.+++||=||+|.|..+.++++..+-.+++++|+ |.|++.+++         ..+|++++.+|...   . .. .||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            4688999999999999999998776778999999 889998887         25799999999865   2 23 59999


Q ss_pred             EechhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          260 VLKWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       260 ~~~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ++--.-...+...  ...+++.+++.|+|   +|.+++.-
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~  191 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA  191 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence            8754432222211  25899999999998   77777654

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.14  E-value=1.5e-05  Score=68.84  Aligned_cols=96  Identities=20%  Similarity=0.308  Sum_probs=69.8

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhc-hh----cCCCeEEEecCCCC---C-CC--CccEEEechhh
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGL-ES----DLANLKYVGGDMFE---A-IP--PADAVVLKWIL  265 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a-~~----~~~rv~~~~~d~~~---~-~p--~~D~i~~~~vL  265 (307)
                      ..+||||||.|.++..+|+++|+..++|+++ .+++..+ ..    ..+++.++++|...   . .+  ..|-|.+...=
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            5799999999999999999999999999999 4444443 33    33489999999876   1 22  24555544322


Q ss_pred             ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          266 HDWNDEE-------CVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       266 h~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                       -|+...       ...+|+.+++.|+|   ||.|.+..
T Consensus       130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT  164 (227)
T COG0220         130 -PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT  164 (227)
T ss_pred             -CCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence             144331       24689999999999   89887653

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.13  E-value=1.1e-05  Score=68.55  Aligned_cols=97  Identities=10%  Similarity=0.123  Sum_probs=66.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC---C-CccEEEechhh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI---P-PADAVVLKWIL  265 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~---p-~~D~i~~~~vL  265 (307)
                      ...+|||+|||+|.++..++.+.. .+++++|. +..++.+++     ..++++++++|+++..   . .+|+|++.=..
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            356899999999999997666553 58999999 777777765     2458999999987632   2 48999877663


Q ss_pred             ccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeeec
Q 037127          266 HDWNDEECVKILKKCKE--AITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~--~L~p~~~gg~lli~e~~~  300 (307)
                      +. .  -...+++.+.+  .++|    +.++++|.-.
T Consensus       132 ~~-g--~~~~~l~~l~~~~~l~~----~~iv~ve~~~  161 (199)
T PRK10909        132 RK-G--LLEETINLLEDNGWLAD----EALIYVESEV  161 (199)
T ss_pred             CC-C--hHHHHHHHHHHCCCcCC----CcEEEEEecC
Confidence            22 1  12244454444  3676    4566666543

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.13  E-value=2.2e-05  Score=74.98  Aligned_cols=91  Identities=13%  Similarity=0.151  Sum_probs=63.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC-----CC--CccEEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA-----IP--PADAVV  260 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~-----~p--~~D~i~  260 (307)
                      ..+..+|||+|||+|.++..+++..  .+++++|. +.+++.|++     ..++++|+.+|+.+.     .+  .+|+|+
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi  372 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL  372 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence            3455799999999999999999885  58999999 888888876     235799999998652     21  389887


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      +.=     |-.....+++.+.+ ++|   ++.++|
T Consensus       373 ~dP-----Pr~g~~~~~~~l~~-~~~---~~ivyv  398 (443)
T PRK13168        373 LDP-----PRAGAAEVMQALAK-LGP---KRIVYV  398 (443)
T ss_pred             ECc-----CCcChHHHHHHHHh-cCC---CeEEEE
Confidence            632     21112244555544 466   454444

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.12  E-value=2.4e-05  Score=69.87  Aligned_cols=94  Identities=13%  Similarity=0.167  Sum_probs=70.6

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCCC-ccEEEechhhccC
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIPP-ADAVVLKWILHDW  268 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p~-~D~i~~~~vLh~~  268 (307)
                      .+.|||||||+|.++.-.+++. ..++..++-++|.+.|++      ..+||+.++|-+.+ ++|+ +|++|.--.-+.+
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL  256 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML  256 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence            5689999999999998777764 357999999999999987      68999999999998 8885 9988765444443


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      -++.-..---.+++.|+|   .|+.+
T Consensus       257 ~NERMLEsYl~Ark~l~P---~GkMf  279 (517)
T KOG1500|consen  257 VNERMLESYLHARKWLKP---NGKMF  279 (517)
T ss_pred             hhHHHHHHHHHHHhhcCC---CCccc
Confidence            343222223346689998   56654

>PRK00536 speE spermidine synthase; Provisional

Probab=98.11  E-value=2.4e-05  Score=68.96  Aligned_cols=89  Identities=13%  Similarity=0.145  Sum_probs=69.8

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCCCC-CCccEEEech
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFEAI-PPADAVVLKW  263 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~~~-p~~D~i~~~~  263 (307)
                      +.+++||=||||-|..++++++. |. +++.+|+ +.|++.+++         ..+|++++.. +.+.. ..||+|+.-.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs  147 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence            56789999999999999999996 54 9999999 889988887         4689999873 22222 3599999875


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .    .+   ..+.+.++++|+|   ||.++..
T Consensus       148 ~----~~---~~fy~~~~~~L~~---~Gi~v~Q  170 (262)
T PRK00536        148 E----PD---IHKIDGLKRMLKE---DGVFISV  170 (262)
T ss_pred             C----CC---hHHHHHHHHhcCC---CcEEEEC
Confidence            3    22   3678999999999   7776654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.07  E-value=1.4e-05  Score=80.52  Aligned_cols=97  Identities=13%  Similarity=0.133  Sum_probs=71.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cC-CCeEEEecCCCCC---CC-CccEEEech
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DL-ANLKYVGGDMFEA---IP-PADAVVLKW  263 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~-~rv~~~~~d~~~~---~p-~~D~i~~~~  263 (307)
                      +.++|||+|||+|.++..+++. ...+++++|+ +.+++.+++      .. ++++++.+|+++.   .+ .||+|++.=
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            4679999999999999999986 3347999999 788888876      22 5899999998762   23 599999842


Q ss_pred             hh--------ccCC-hhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          264 IL--------HDWN-DEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       264 vL--------h~~~-~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .-        ..+. ...-..+++.+.+.|+|   ||.+++.
T Consensus       617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~  655 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS  655 (702)
T ss_pred             CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence            11        0011 12345788899999998   8877654

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.06  E-value=3.5e-05  Score=67.42  Aligned_cols=105  Identities=17%  Similarity=0.237  Sum_probs=77.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-C-
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-I-  253 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-~-  253 (307)
                      ..|+..++  +.++.+||+.|.|+|.++..|++. .|.-+++.+|. ++-.+.|++      ..++|++..+|+.++ + 
T Consensus        30 ~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~  107 (247)
T PF08704_consen   30 SYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD  107 (247)
T ss_dssp             HHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred             HHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence            34555566  778899999999999999999964 57889999999 777777766      567899999999752 3 


Q ss_pred             ----CCccEEEechhhccCChhHHHHHHHHHHHhc-cCCCCCcEEEEEeeec
Q 037127          254 ----PPADAVVLKWILHDWNDEECVKILKKCKEAI-TSNSKIGKVIIIDMMR  300 (307)
Q Consensus       254 ----p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L-~p~~~gg~lli~e~~~  300 (307)
                          ..+|.+++     |+|++-  ..|.++.++| ++   ||+++++-++.
T Consensus       108 ~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~fsP~i  149 (247)
T PF08704_consen  108 EELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCFSPCI  149 (247)
T ss_dssp             TT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEEESSH
T ss_pred             ccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEECCCH
Confidence                24898876     566653  6689999999 78   99999987765

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.05  E-value=2.6e-05  Score=68.41  Aligned_cols=98  Identities=14%  Similarity=0.106  Sum_probs=75.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C-------CC
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I-------PP  255 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~-------p~  255 (307)
                      ..++++||+||+++|+.+..+++..| +.+++.+|. ++..+.|++      ..++|+++.||..+-   .       ..
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            34678999999999999999999874 678999999 777777776      578999999998761   1       35


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ||+|++-.-     ...-...+..+.+.|+|   | .++|+|.++
T Consensus       157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~---G-Gviv~DNvl  192 (247)
T PLN02589        157 FDFIFVDAD-----KDNYINYHKRLIDLVKV---G-GVIGYDNTL  192 (247)
T ss_pred             ccEEEecCC-----HHHhHHHHHHHHHhcCC---C-eEEEEcCCC
Confidence            999988643     33346778888899998   4 556666554

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.05  E-value=2.5e-05  Score=70.95  Aligned_cols=97  Identities=11%  Similarity=0.171  Sum_probs=72.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC----CCeEEEecc-hHHHHhchh-c----CCCeEE--EecCCCCC---C-----C-
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFP----NLECTDFDL-PHVVNGLES-D----LANLKY--VGGDMFEA---I-----P-  254 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p----~~~~~~~Dl-~~~~~~a~~-~----~~rv~~--~~~d~~~~---~-----p-  254 (307)
                      ....|||+|||+|.-...|++...    ..+.+.+|+ .+.++.+.+ .    .+.|++  +++|+.+.   .     + 
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            445899999999988777766553    467999999 456666554 2    245655  78888662   2     1 


Q ss_pred             Cc-cEEEechhhccCChhHHHHHHHHHHH-hccCCCCCcEEEE
Q 037127          255 PA-DAVVLKWILHDWNDEECVKILKKCKE-AITSNSKIGKVII  295 (307)
Q Consensus       255 ~~-D~i~~~~vLh~~~~~~~~~~L~~~~~-~L~p~~~gg~lli  295 (307)
                      .. -++++.+.+.+++++++..+|+++++ .|+|   |+.++|
T Consensus       156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLi  195 (319)
T TIGR03439       156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLI  195 (319)
T ss_pred             CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEE
Confidence            23 44567779999999999999999999 9998   676665

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.01  E-value=4.1e-05  Score=71.85  Aligned_cols=100  Identities=12%  Similarity=0.050  Sum_probs=71.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cC-CCeEEEecCCCCC---C---C-CccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DL-ANLKYVGGDMFEA---I---P-PADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~-~rv~~~~~d~~~~---~---p-~~D~i  259 (307)
                      .+.++|||+|||+|.++...+.. +..+++.+|+ +.+++.+++      .. ++++++.+|+++.   .   . .||+|
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence            34679999999999998876653 3458999999 788888776      22 4899999999872   1   2 49999


Q ss_pred             EechhhccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          260 VLKWILHDWND-------EECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       260 ~~~~vLh~~~~-------~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ++.=.-..-+.       ..-..+++.+.+.|+|   ||.++.+..
T Consensus       298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~sc  340 (396)
T PRK15128        298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFSC  340 (396)
T ss_pred             EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence            97743211111       1124566678899998   888887543

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.01  E-value=2.1e-05  Score=70.99  Aligned_cols=96  Identities=16%  Similarity=0.153  Sum_probs=71.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechhh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWIL  265 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~vL  265 (307)
                      -+.+.|||||||+|.++.-.+++. ..+++++|-.++++.+.+      ..+.|+++.|.+.+ ++|  .+|+|+.-|.-
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG  137 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG  137 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence            456799999999999999999987 568999999998888877      56779999998887 555  59999888877


Q ss_pred             ccCC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 037127          266 HDWN-DEECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       266 h~~~-~~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      |..- +.-.-.+|-.==+-|+|   ||.++
T Consensus       138 y~Ll~EsMldsVl~ARdkwL~~---~G~i~  164 (346)
T KOG1499|consen  138 YFLLYESMLDSVLYARDKWLKE---GGLIY  164 (346)
T ss_pred             HHHHHhhhhhhhhhhhhhccCC---CceEc
Confidence            6532 22222334333467887   77654

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.97  E-value=5.6e-05  Score=68.96  Aligned_cols=65  Identities=15%  Similarity=0.187  Sum_probs=52.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---CC-CccEEEec
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---IP-PADAVVLK  262 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~p-~~D~i~~~  262 (307)
                      ...+|||+|||+|.++..+++.  ..+++++|. +.+++.+++     ..++++|+++|+.+.   .. .+|+|++.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            3578999999999999999985  468999999 888888875     236899999999762   22 48998876

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.94  E-value=8.6e-05  Score=64.22  Aligned_cols=119  Identities=18%  Similarity=0.285  Sum_probs=77.4

Q ss_pred             ccccCCcHHHHHHHHHHHh-chhh---hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHh
Q 037127          159 EYAGDEPKINNFFNEAMAS-DARL---ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNG  234 (307)
Q Consensus       159 ~~~~~~~~~~~~f~~~m~~-~~~~---~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~  234 (307)
                      +.+..+|.....|++.... ...|   ..+.|++.+. ..++...|-|+|||.+.++.   ..  .-.+..+||-.+   
T Consensus       140 ~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~---  210 (325)
T KOG3045|consen  140 DLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV---  210 (325)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhh---cc--ccceeeeeeecC---
Confidence            3334566666666655542 2222   2455565554 13456789999999998886   11  235788887332   


Q ss_pred             chhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          235 LESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       235 a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                            +-.++..||.+ |.+  .+|++++.-.|-  .. ....++++++++|++   ||.++|.|-
T Consensus       211 ------~~~V~~cDm~~vPl~d~svDvaV~CLSLM--gt-n~~df~kEa~RiLk~---gG~l~IAEv  265 (325)
T KOG3045|consen  211 ------NERVIACDMRNVPLEDESVDVAVFCLSLM--GT-NLADFIKEANRILKP---GGLLYIAEV  265 (325)
T ss_pred             ------CCceeeccccCCcCccCcccEEEeeHhhh--cc-cHHHHHHHHHHHhcc---CceEEEEeh
Confidence                  23345688888 554  388887766663  22 135899999999999   999999885

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.94  E-value=2.6e-05  Score=70.05  Aligned_cols=78  Identities=15%  Similarity=0.191  Sum_probs=60.9

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-c--CCCeEEEecCCCC--C-C-
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-D--LANLKYVGGDMFE--A-I-  253 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-~--~~rv~~~~~d~~~--~-~-  253 (307)
                      .++++..+.  ..+...+||.+||.|.++..+++.+| +.+++++|. |.+++.+++ .  .+|++++.+|+.+  . . 
T Consensus         8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~   85 (296)
T PRK00050          8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA   85 (296)
T ss_pred             HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence            355666665  45567999999999999999999996 789999999 889988876 3  3699999999876  1 1 


Q ss_pred             ---CCccEEEec
Q 037127          254 ---PPADAVVLK  262 (307)
Q Consensus       254 ---p~~D~i~~~  262 (307)
                         +.+|.|++-
T Consensus        86 ~~~~~vDgIl~D   97 (296)
T PRK00050         86 EGLGKVDGILLD   97 (296)
T ss_pred             cCCCccCEEEEC
Confidence               146776553

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.91  E-value=6.5e-06  Score=77.47  Aligned_cols=99  Identities=15%  Similarity=0.165  Sum_probs=69.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc----hHHHHhchhcCCCeEEEec---CCCCCCC--CccEEEechhh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL----PHVVNGLESDLANLKYVGG---DMFEAIP--PADAVVLKWIL  265 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl----~~~~~~a~~~~~rv~~~~~---d~~~~~p--~~D~i~~~~vL  265 (307)
                      .....+||||||+|.|+..++++  ++..+.+-.    +..++.|-+  -.|--+.+   ...-|+|  .||++.|++++
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale--RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~  191 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE--RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCL  191 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh--cCcchhhhhhccccccCCccchhhhhccccc
Confidence            44578899999999999999998  544433322    334444432  11222222   2233677  49999999999


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      ..|...+ -.+|-.+-++|+|   ||.++...+-..
T Consensus       192 i~W~~~~-g~~l~evdRvLRp---GGyfv~S~ppv~  223 (506)
T PF03141_consen  192 IPWHPND-GFLLFEVDRVLRP---GGYFVLSGPPVY  223 (506)
T ss_pred             ccchhcc-cceeehhhhhhcc---CceEEecCCccc
Confidence            9998876 3688899999999   899887766544

; GO: 0008168 methyltransferase activity

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.88  E-value=6.3e-05  Score=68.36  Aligned_cols=75  Identities=13%  Similarity=0.127  Sum_probs=57.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEe----cCCCCCC--C--CccEE
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVG----GDMFEAI--P--PADAV  259 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~----~d~~~~~--p--~~D~i  259 (307)
                      ...++||||||+|.....++.+.++++++++|+ +..++.|+.       ..++|++..    .+++...  +  .||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            457899999999999888888889999999999 788888876       245788864    2444422  2  49999


Q ss_pred             EechhhccCCh
Q 037127          260 VLKWILHDWND  270 (307)
Q Consensus       260 ~~~~vLh~~~~  270 (307)
                      ++.=..|.-.+
T Consensus       194 vcNPPf~~s~~  204 (321)
T PRK11727        194 LCNPPFHASAA  204 (321)
T ss_pred             EeCCCCcCcch
Confidence            99988875433

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.83  E-value=8.3e-05  Score=72.09  Aligned_cols=98  Identities=15%  Similarity=0.241  Sum_probs=72.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc--hHHHHhchh----cCCCeEEEecCCCC---CCC--CccEEEechh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL--PHVVNGLES----DLANLKYVGGDMFE---AIP--PADAVVLKWI  264 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~----~~~rv~~~~~d~~~---~~p--~~D~i~~~~v  264 (307)
                      ....+||||||.|.++..+++.+|+..++|+|.  +.+...+++    ...++.++++|+..   .+|  ..|-+++...
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            356899999999999999999999999999999  434333333    45678888887642   345  3677766554


Q ss_pred             hccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          265 LHDWNDEE-------CVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       265 Lh~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      =. |+...       ...+|+.+++.|+|   ||.|.+..
T Consensus       427 DP-WpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T  462 (506)
T PRK01544        427 DP-WIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS  462 (506)
T ss_pred             CC-CCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence            32 54321       35789999999999   89888753

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.81  E-value=7.9e-05  Score=62.84  Aligned_cols=97  Identities=12%  Similarity=0.129  Sum_probs=64.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C--C-C-ccEEEe
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I--P-P-ADAVVL  261 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~--p-~-~D~i~~  261 (307)
                      ...+|||++||+|.++.+++.+... +++.+|. +..++.+++      ..++++++.+|.++.   .  . . +|+|++
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            3568999999999999999998653 7999999 677776665      345899999999652   1  1 2 566665


Q ss_pred             chhhccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeeec
Q 037127          262 KWILHDWNDEECVKILKKCKE--AITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       262 ~~vLh~~~~~~~~~~L~~~~~--~L~p~~~gg~lli~e~~~  300 (307)
                      .=....   .....++..+.+  .+++    +.++|+|.-.
T Consensus       128 DPPy~~---~~~~~~l~~l~~~~~l~~----~~iiv~E~~~  161 (189)
T TIGR00095       128 DPPFFN---GALQALLELCENNWILED----TVLIVVEEDR  161 (189)
T ss_pred             CcCCCC---CcHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence            433321   112344444433  4555    6677777654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.79  E-value=0.00011  Score=64.11  Aligned_cols=75  Identities=21%  Similarity=0.440  Sum_probs=62.4

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP  254 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p  254 (307)
                      .+.++..-+  ...+..||+||.|||.++..+++.  +.+++.+++ |.++....+      ...+++.+.+|+++ +.|
T Consensus        47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P  122 (315)
T KOG0820|consen   47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP  122 (315)
T ss_pred             HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence            455666655  677889999999999999999999  668999998 888887766      35789999999999 788


Q ss_pred             CccEEEe
Q 037127          255 PADAVVL  261 (307)
Q Consensus       255 ~~D~i~~  261 (307)
                      -+|.++.
T Consensus       123 ~fd~cVs  129 (315)
T KOG0820|consen  123 RFDGCVS  129 (315)
T ss_pred             ccceeec
Confidence            8888766

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.78  E-value=0.00028  Score=61.14  Aligned_cols=98  Identities=13%  Similarity=0.155  Sum_probs=61.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHh-chhcCCCeE-EEecCCCC--------C
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNG-LESDLANLK-YVGGDMFE--------A  252 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~-a~~~~~rv~-~~~~d~~~--------~  252 (307)
                      ..+++.+. ......++||+|||+|.++..+++. +..+++++|. +.++.. .+ ..+|+. +...|+..        +
T Consensus        64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~-~~~~v~~~~~~ni~~~~~~~~~~d  140 (228)
T TIGR00478        64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLR-QDERVKVLERTNIRYVTPADIFPD  140 (228)
T ss_pred             HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHh-cCCCeeEeecCCcccCCHhHcCCC
Confidence            34455544 1235678999999999999999997 3458999999 535543 44 455554 33445543        1


Q ss_pred             CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          253 IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       253 ~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ++.+|+.+++..+          +|..+.++|++   +-.++++-
T Consensus       141 ~~~~DvsfiS~~~----------~l~~i~~~l~~---~~~~~L~K  172 (228)
T TIGR00478       141 FATFDVSFISLIS----------ILPELDLLLNP---NDLTLLFK  172 (228)
T ss_pred             ceeeeEEEeehHh----------HHHHHHHHhCc---CeEEEEcC
Confidence            1236766666544          36677777876   44444443

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.72  E-value=9.5e-05  Score=70.42  Aligned_cols=92  Identities=18%  Similarity=0.280  Sum_probs=63.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC-----C-C-CccEEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA-----I-P-PADAVV  260 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~-----~-p-~~D~i~  260 (307)
                      ..+..+|||+|||+|.++..+++..  .+++++|. +.+++.|++     ..++++|+.+|+.+.     . . .+|+++
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi  367 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL  367 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence            3455789999999999999999874  47999999 888888876     346899999998651     1 1 379888


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      +.=.=-..    ...+++.+.+ ++|   ++.+++
T Consensus       368 ~dPPr~G~----~~~~l~~l~~-l~~---~~ivyv  394 (431)
T TIGR00479       368 LDPPRKGC----AAEVLRTIIE-LKP---ERIVYV  394 (431)
T ss_pred             ECcCCCCC----CHHHHHHHHh-cCC---CEEEEE
Confidence            63221000    1345555443 676   555444

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.67  E-value=0.0002  Score=66.94  Aligned_cols=64  Identities=14%  Similarity=0.211  Sum_probs=51.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---C-CCccEEEec
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---I-PPADAVVLK  262 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~-p~~D~i~~~  262 (307)
                      ..+|||+|||+|.++..++..  ..+++++|. +..++.+++     ..++++|..+|+.+.   . ..+|+|++.
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D  307 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN  307 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence            468999999999999999965  468999999 888887776     235899999998652   1 248988876

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.66  E-value=0.00023  Score=62.12  Aligned_cols=68  Identities=15%  Similarity=0.283  Sum_probs=51.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCC----CCCCC----CccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDM----FEAIP----PADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~----~~~~p----~~D~i  259 (307)
                      .+...++|+|||+|..+..++...|+.+++.+|. +..+..|.+      ..+|+..+..++    +.+.+    ..|++
T Consensus       147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll  226 (328)
T KOG2904|consen  147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL  226 (328)
T ss_pred             cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence            3455899999999999999999999999999999 555655544      678888885544    44332    36766


Q ss_pred             Eec
Q 037127          260 VLK  262 (307)
Q Consensus       260 ~~~  262 (307)
                      +++
T Consensus       227 vsN  229 (328)
T KOG2904|consen  227 VSN  229 (328)
T ss_pred             ecC
Confidence            554

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.66  E-value=8.1e-05  Score=65.36  Aligned_cols=96  Identities=15%  Similarity=0.153  Sum_probs=73.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDE  271 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~  271 (307)
                      ....++|+|||.|.++.    .+|.+..++.|+ ...+.-+++ .+.......|+.+ |.+  .+|..+...++|+|...
T Consensus        45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~-~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~  119 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR-SGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR  119 (293)
T ss_pred             CcceeeecccCCcccCc----CCCcceeeecchhhhhcccccc-CCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence            46789999999998873    348888999999 566666663 2222455578887 544  49999999999998754


Q ss_pred             -HHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          272 -ECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       272 -~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                       ...++|+++.+.++|   ||..+|.-.-
T Consensus       120 ~RR~~~l~e~~r~lrp---gg~~lvyvwa  145 (293)
T KOG1331|consen  120 ERRERALEELLRVLRP---GGNALVYVWA  145 (293)
T ss_pred             HHHHHHHHHHHHHhcC---CCceEEEEeh
Confidence             557899999999999   8987776443

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.58  E-value=0.00016  Score=60.38  Aligned_cols=100  Identities=14%  Similarity=0.233  Sum_probs=67.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------------cCCCeEEEecCCCCCCCC-ccEEEec
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------------DLANLKYVGGDMFEAIPP-ADAVVLK  262 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~~~p~-~D~i~~~  262 (307)
                      .-.++|||||.|.++..|...||+.-++|+++ -.|.+..++            ...++.....+.+.-.|+ +.--.++
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            34689999999999999999999999999998 444443332            234566776666664553 2222333


Q ss_pred             hhhccCChhH-----------HHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          263 WILHDWNDEE-----------CVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       263 ~vLh~~~~~~-----------~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      -..+.+||+.           +..++.+..-.|++   ||.++.+.-+
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv  185 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDV  185 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeH
Confidence            3333344331           24678888888998   8998877544

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.53  E-value=0.00032  Score=58.77  Aligned_cols=89  Identities=19%  Similarity=0.297  Sum_probs=66.7

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEecc-hH---HHHhchh--cCCCeEEEecCCCC-CCC-CccEEEechhhccCCh
Q 037127          199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PH---VVNGLES--DLANLKYVGGDMFE-AIP-PADAVVLKWILHDWND  270 (307)
Q Consensus       199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~---~~~~a~~--~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~~~  270 (307)
                      +++|||+|.|.=+..++=.+|+++++.+|. ..   .++.+..  ..++++++++.+.+ ..+ .||+++++-+-.    
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~----  126 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP----  126 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence            899999999999999999999999999998 33   2333332  46789999998887 333 599888887653    


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          271 EECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                        ...++.-+...+++   ||+++..
T Consensus       127 --l~~l~~~~~~~l~~---~G~~l~~  147 (184)
T PF02527_consen  127 --LDKLLELARPLLKP---GGRLLAY  147 (184)
T ss_dssp             --HHHHHHHHGGGEEE---EEEEEEE
T ss_pred             --HHHHHHHHHHhcCC---CCEEEEE
Confidence              23777888888888   8888765

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00077  Score=59.21  Aligned_cols=83  Identities=12%  Similarity=0.286  Sum_probs=61.4

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC--
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP--  255 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~--  255 (307)
                      .+.+++...  ......|++||+|.|.++..|+++..  +++++++ +..++..++   ..++++++.+|+++ ++|.  
T Consensus        19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~   94 (259)
T COG0030          19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA   94 (259)
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence            466676665  45578999999999999999999955  5777787 667777766   46899999999998 6663  


Q ss_pred             -ccEEEechhhccCCh
Q 037127          256 -ADAVVLKWILHDWND  270 (307)
Q Consensus       256 -~D~i~~~~vLh~~~~  270 (307)
                       ++ .+.++.=|+.+.
T Consensus        95 ~~~-~vVaNlPY~Iss  109 (259)
T COG0030          95 QPY-KVVANLPYNISS  109 (259)
T ss_pred             CCC-EEEEcCCCcccH
Confidence             33 344444444544

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=97.46  E-value=8.6e-05  Score=48.72  Aligned_cols=46  Identities=28%  Similarity=0.565  Sum_probs=39.8

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      +.|+++|...+++.|+.|||+++|+   +...+.|+|..|...|+++++
T Consensus         6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~d   51 (52)
T PF09339_consen    6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERD   51 (52)
T ss_dssp             HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEC
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecC
Confidence            3467778876677899999999999   678999999999999999986

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.00012  Score=65.80  Aligned_cols=103  Identities=18%  Similarity=0.323  Sum_probs=70.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCe-EEEecchHHHHhchh------cCCCeEEEecCCCC---CCCCccEEEechhh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLE-CTDFDLPHVVNGLES------DLANLKYVGGDMFE---AIPPADAVVLKWIL  265 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~---~~p~~D~i~~~~vL  265 (307)
                      .+++|||||-|.|.-+-++-.-+|+++ +++++.++.+...-.      ...+......|+..   ++|..|.|.+.-++
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~  192 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL  192 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence            357799999999999999999999985 677777444433322      22233333344443   46666776666555


Q ss_pred             cc----CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          266 HD----WNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       266 h~----~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      |.    =...+....++++-..+.|   ||.++|+|.--|
T Consensus       193 ~eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp  229 (484)
T COG5459         193 DELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTP  229 (484)
T ss_pred             hhhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCc
Confidence            54    3334455588999999998   999999997544

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.43  E-value=0.00034  Score=59.33  Aligned_cols=91  Identities=19%  Similarity=0.226  Sum_probs=64.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC--CCccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI--PPADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~--p~~D~i~~~~v  264 (307)
                      ..+..+|+|.-||.|.|+..+++..+..+++..|+ |..++.+++      ..++|....+|..+-.  ..+|-|+|...
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp  178 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP  178 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence            34577999999999999999999888889999999 777777665      6788999999998733  24897777543


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEE
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKV  293 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~l  293 (307)
                           .. +..+|..+.+.+++   ||.+
T Consensus       179 -----~~-~~~fl~~~~~~~~~---~g~i  198 (200)
T PF02475_consen  179 -----ES-SLEFLDAALSLLKE---GGII  198 (200)
T ss_dssp             -----SS-GGGGHHHHHHHEEE---EEEE
T ss_pred             -----HH-HHHHHHHHHHHhcC---CcEE
Confidence                 22 24788888899997   6654

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.42  E-value=0.00026  Score=60.25  Aligned_cols=94  Identities=18%  Similarity=0.296  Sum_probs=68.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCC--eEEEecCCCC-CCC--CccEEEechhhcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLAN--LKYVGGDMFE-AIP--PADAVVLKWILHD  267 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~r--v~~~~~d~~~-~~p--~~D~i~~~~vLh~  267 (307)
                      +....++|||||.|.....|..+.-+ +.+.+|. -.|++.++. ..+.  ++...+|=.. ++.  .+|+++.+..+| 
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~ve-kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH-  148 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVE-KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH-  148 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchh-heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-
Confidence            34568999999999999999988532 6788888 678887775 2233  3444454333 344  499999999998 


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      |.++ ...-+.+|+.+|||   +|.++
T Consensus       149 W~Nd-LPg~m~~ck~~lKP---Dg~Fi  171 (325)
T KOG2940|consen  149 WTND-LPGSMIQCKLALKP---DGLFI  171 (325)
T ss_pred             hhcc-CchHHHHHHHhcCC---Cccch
Confidence            6654 35678899999999   66543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.37  E-value=0.00063  Score=61.71  Aligned_cols=94  Identities=20%  Similarity=0.390  Sum_probs=72.8

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchh------------cCCCeEEEecCCCCCCC----Cc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES------------DLANLKYVGGDMFEAIP----PA  256 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~~~p----~~  256 (307)
                      ++..++|-+|||.|..++++++ ||+. +++.+|+ |.|++.++.            ..+|++.+..|.++-..    .|
T Consensus       288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            4678999999999999999988 7854 7999999 999998874            47899999999998321    47


Q ss_pred             cEEEechhhccCChhH--------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          257 DAVVLKWILHDWNDEE--------CVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~--------~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      |.+|..     ++|+.        ...+-+-+++.|++   +|.+++..
T Consensus       367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQa  407 (508)
T COG4262         367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQA  407 (508)
T ss_pred             cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEec
Confidence            877653     33332        24566778888998   78777754

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.33  E-value=0.00017  Score=58.91  Aligned_cols=64  Identities=22%  Similarity=0.370  Sum_probs=47.0

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---CC--C-ccEEEech
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---IP--P-ADAVVLKW  263 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~p--~-~D~i~~~~  263 (307)
                      ..|+|+-||.|.-++++++.+.  +++.+|+ |.-++.++.      ..+||.|+++|+++-   +.  . +|+|+++=
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            3699999999999999999965  6899999 777777776      477999999999872   22  2 79888753

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.32  E-value=0.00031  Score=58.63  Aligned_cols=105  Identities=19%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             HHHHHhcccc-ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEecCCCCC---------
Q 037127          184 RVVIHKCKNV-FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGGDMFEA---------  252 (307)
Q Consensus       184 ~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~---------  252 (307)
                      .++.+.++.. ..+..++||+||++|.|+..++++. +..+++++|+...-     ....+.++.+|+.++         
T Consensus        10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----~~~~~~~i~~d~~~~~~~~~i~~~   84 (181)
T PF01728_consen   10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----PLQNVSFIQGDITNPENIKDIRKL   84 (181)
T ss_dssp             HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----S-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred             HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----cccceeeeecccchhhHHHhhhhh
Confidence            3455555511 1245899999999999999999987 67899999995441     223455555665431         


Q ss_pred             C----CCccEEEechhhc---c--CCh----hHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          253 I----PPADAVVLKWILH---D--WND----EECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       253 ~----p~~D~i~~~~vLh---~--~~~----~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .    ..+|+|++-....   +  .+.    +-+...|.-+.+.|++   ||.+++-
T Consensus        85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K  138 (181)
T PF01728_consen   85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIK  138 (181)
T ss_dssp             HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEE
T ss_pred             ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEE
Confidence            1    2489887766221   1  111    1233444445566888   8876653

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.0018  Score=53.27  Aligned_cols=101  Identities=15%  Similarity=0.321  Sum_probs=69.1

Q ss_pred             CCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCC--CCccEEEechhhc--
Q 037127          197 LNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAI--PPADAVVLKWILH--  266 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~--p~~D~i~~~~vLh--  266 (307)
                      ..-+++||||+|..+..|++.. |+......|+ |+.++...+    ...++..++.|+...+  ...|+.+++-..-  
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt  123 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT  123 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence            6789999999999999887664 7788899999 777766444    4556778888887732  2477777665332  


Q ss_pred             ------------cCC-----hhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          267 ------------DWN-----DEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       267 ------------~~~-----~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                                  -|.     .+-..++|..+-..|.|   .|.++++-...
T Consensus       124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp---~Gv~Ylv~~~~  171 (209)
T KOG3191|consen  124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSP---RGVFYLVALRA  171 (209)
T ss_pred             CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCc---CceEEeeehhh
Confidence                        122     11123566667777777   78888775443

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.30  E-value=0.0011  Score=62.04  Aligned_cols=91  Identities=19%  Similarity=0.138  Sum_probs=70.0

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC--C-CCCccEEEechhhcc
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE--A-IPPADAVVLKWILHD  267 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~--~-~p~~D~i~~~~vLh~  267 (307)
                      ..+|||++||+|.++..++...+..++++.|. |..++.+++     ..+.+++..+|...  . ...||+|++.=    
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP----  133 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP----  133 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence            35899999999999999999887668999999 788887776     24457788999865  2 23599998843    


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +...  ..+|..+.+.+++   ||.++|.
T Consensus       134 ~Gs~--~~~l~~al~~~~~---~gilyvS  157 (382)
T PRK04338        134 FGSP--APFLDSAIRSVKR---GGLLCVT  157 (382)
T ss_pred             CCCc--HHHHHHHHHHhcC---CCEEEEE
Confidence            1222  4678887788888   8888887

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.30  E-value=0.0011  Score=53.00  Aligned_cols=85  Identities=24%  Similarity=0.352  Sum_probs=59.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHH----CCCCeEEEecc-hHHHHhchh--------cCCCeEEEecCCCCC--CCCccE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKA----FPNLECTDFDL-PHVVNGLES--------DLANLKYVGGDMFEA--IPPADA  258 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~~--~p~~D~  258 (307)
                      ..+..+|+|+|||.|+++..|+..    .++++++++|. +..++.+.+        ...++++..+++...  ....++
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI  102 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence            356789999999999999999982    27889999998 666666654        236677777776652  224666


Q ss_pred             EEechhhccCChhHHHHHHHHHHH
Q 037127          259 VVLKWILHDWNDEECVKILKKCKE  282 (307)
Q Consensus       259 i~~~~vLh~~~~~~~~~~L~~~~~  282 (307)
                      ++--|.-=+.++    .+|+...+
T Consensus       103 ~vgLHaCG~Ls~----~~l~~~~~  122 (141)
T PF13679_consen  103 LVGLHACGDLSD----RALRLFIR  122 (141)
T ss_pred             EEEeecccchHH----HHHHHHHH
Confidence            666555544544    55555544

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.30  E-value=0.00054  Score=58.14  Aligned_cols=88  Identities=18%  Similarity=0.261  Sum_probs=65.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCC-CCC-----CccEEEechhhccCCh
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFE-AIP-----PADAVVLKWILHDWND  270 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~-~~p-----~~D~i~~~~vLh~~~~  270 (307)
                      ..++|||||=+......   .++-..++-+||.+.         .-.+...||++ |+|     .||+|.++-||.+.|+
T Consensus        52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~---------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~  119 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ---------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD  119 (219)
T ss_pred             cceEEeecccCCCCccc---ccCceeeEEeecCCC---------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence            46899999975543322   355667899998442         12355789988 666     3999999999999996


Q ss_pred             h-HHHHHHHHHHHhccCCCCCcE-----EEEEeee
Q 037127          271 E-ECVKILKKCKEAITSNSKIGK-----VIIIDMM  299 (307)
Q Consensus       271 ~-~~~~~L~~~~~~L~p~~~gg~-----lli~e~~  299 (307)
                      + +.-+.|+++++.|+|   +|.     ++|+-+.
T Consensus       120 p~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~  151 (219)
T PF11968_consen  120 PKQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPL  151 (219)
T ss_pred             HHHHHHHHHHHHHHhCC---CCccCcceEEEEeCc
Confidence            5 567899999999998   677     7777543

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.29  E-value=0.0013  Score=58.45  Aligned_cols=96  Identities=14%  Similarity=0.275  Sum_probs=68.1

Q ss_pred             hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC-
Q 037127          182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP-  255 (307)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~-  255 (307)
                      ..+.+++.++  ......|||||+|.|.++..|++..  -+++++|. +..++..++   ..++++++.+|+++ +.+. 
T Consensus        18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~   93 (262)
T PF00398_consen   18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL   93 (262)
T ss_dssp             HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence            3456666666  5577899999999999999999997  67899998 777777776   46899999999998 3332 


Q ss_pred             ---ccEEEechhhccCChhHHHHHHHHHHHhcc
Q 037127          256 ---ADAVVLKWILHDWNDEECVKILKKCKEAIT  285 (307)
Q Consensus       256 ---~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~  285 (307)
                         -.+.++++.=++.    ...++.++...-+
T Consensus        94 ~~~~~~~vv~NlPy~i----s~~il~~ll~~~~  122 (262)
T PF00398_consen   94 LKNQPLLVVGNLPYNI----SSPILRKLLELYR  122 (262)
T ss_dssp             CSSSEEEEEEEETGTG----HHHHHHHHHHHGG
T ss_pred             hcCCceEEEEEecccc----hHHHHHHHhhccc
Confidence               3344555433322    2467777766433

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.25  E-value=0.0023  Score=54.18  Aligned_cols=106  Identities=18%  Similarity=0.211  Sum_probs=72.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecchHHHHhchhcCCCeEEEecCCCCC---------C
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDLPHVVNGLESDLANLKYVGGDMFEA---------I  253 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~---------~  253 (307)
                      .++.+.+. .+.+..+|+|+|+-+|.+++.+++.... .+++++|+-++-     ..+.|.++.+|++.+         .
T Consensus        34 ~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----~~~~V~~iq~d~~~~~~~~~l~~~l  107 (205)
T COG0293          34 LELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----PIPGVIFLQGDITDEDTLEKLLEAL  107 (205)
T ss_pred             HHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----cCCCceEEeeeccCccHHHHHHHHc
Confidence            45666664 5778899999999999999999887654 468999985543     334599999999983         2


Q ss_pred             CC--ccEEEech---hhccCC------hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          254 PP--ADAVVLKW---ILHDWN------DEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       254 p~--~D~i~~~~---vLh~~~------~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +.  +|+|++-.   +--.|.      -.-+...+.-+.+.|+|   ||.+++-.+
T Consensus       108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~f  160 (205)
T COG0293         108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVF  160 (205)
T ss_pred             CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEE
Confidence            22  58887332   222222      22344556667778898   787776544

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.24  E-value=0.0014  Score=58.23  Aligned_cols=97  Identities=13%  Similarity=0.235  Sum_probs=58.5

Q ss_pred             CCCeEEEecCCch-HHHHHHHHHC-CCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCC---CCCCccEEEec
Q 037127          196 GLNSLVDVGGATG-TVAKAIAKAF-PNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFE---AIPPADAVVLK  262 (307)
Q Consensus       196 ~~~~vlDvGgG~G-~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~---~~p~~D~i~~~  262 (307)
                      .+++|+=||||.= ..+..+++.+ ++..++++|. |..++.+++       ...+++|+.+|..+   +...||+|++.
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            4569999999965 5566666554 6788999999 778887766       47899999999876   24479999887


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      -..- .+.++-.++|.++.+.|+|   |.+|++-
T Consensus       200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R  229 (276)
T PF03059_consen  200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVVR  229 (276)
T ss_dssp             TT-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred             hhcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence            7664 3333336999999999998   6766653

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.20  E-value=0.0021  Score=54.93  Aligned_cols=69  Identities=23%  Similarity=0.342  Sum_probs=54.0

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hH---HHHhchh--cCCCeEEEecCCCC--CCCC-ccEEEechhh
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PH---VVNGLES--DLANLKYVGGDMFE--AIPP-ADAVVLKWIL  265 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~---~~~~a~~--~~~rv~~~~~d~~~--~~p~-~D~i~~~~vL  265 (307)
                      .++++|||.|.|.=+.-++=.+|+++++.+|. ..   .++.+..  ..++++++++-+.+  ..+. ||++.++-+-
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva  145 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA  145 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence            68999999999999999999999999999997 33   3444333  57789999998776  2335 9988776543

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.18  E-value=0.0014  Score=52.23  Aligned_cols=53  Identities=21%  Similarity=0.309  Sum_probs=43.0

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC
Q 037127          199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE  251 (307)
Q Consensus       199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~  251 (307)
                      +++|||||.|.++..+++.+|..+++++|. |.+.+.+++     ...++++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            489999999999999999999999999999 777776665     22457777766554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=97.15  E-value=0.0046  Score=55.41  Aligned_cols=99  Identities=23%  Similarity=0.395  Sum_probs=74.6

Q ss_pred             CCeEEEecCCchHHHHHHHHHC--------------------CCCeEEEecc---hHHHHhchh----c-----------
Q 037127          197 LNSLVDVGGATGTVAKAIAKAF--------------------PNLECTDFDL---PHVVNGLES----D-----------  238 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~--------------------p~~~~~~~Dl---~~~~~~a~~----~-----------  238 (307)
                      ..+||-||||.|.=..+|+..+                    +.++++++|+   ..|+.....    .           
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            4799999999987776666555                    2368899999   567776544    1           


Q ss_pred             -------CCCeEEEecCCCCC-C---------CCccEEEechhhcc-CC--hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          239 -------LANLKYVGGDMFEA-I---------PPADAVVLKWILHD-WN--DEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       239 -------~~rv~~~~~d~~~~-~---------p~~D~i~~~~vLh~-~~--~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                             .=.++|.+.|++.. .         |..++|.+...++. |+  -.+..++|.++-..++|   |..++|+|.
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS  243 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS  243 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence                   11479999999872 1         23788988888865 33  45678999999999999   899999985

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.15  E-value=0.0042  Score=56.53  Aligned_cols=95  Identities=16%  Similarity=0.177  Sum_probs=68.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCCC---CccEEEechhhccCCh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIP---PADAVVLKWILHDWND  270 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~p---~~D~i~~~~vLh~~~~  270 (307)
                      +....++|||||++|.++..++++  +.+++++|...+.+... ..++|+...+|.+...|   .+|.+++-.+-+  |.
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~--P~  283 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK--PA  283 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhh-CCCCEEEEeccCcccCCCCCCCCEEEEecccC--HH
Confidence            356789999999999999999998  56999999865544444 67899999999887433   489998888754  32


Q ss_pred             hHHHHHHHHHHHhccCCCCC-cEEEEEeeec
Q 037127          271 EECVKILKKCKEAITSNSKI-GKVIIIDMMR  300 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~g-g~lli~e~~~  300 (307)
                          ++++-+.+-+..   | .+-.|+..-+
T Consensus       284 ----rva~lm~~Wl~~---g~cr~aIfnLKl  307 (357)
T PRK11760        284 ----RVAELMAQWLVN---GWCREAIFNLKL  307 (357)
T ss_pred             ----HHHHHHHHHHhc---CcccEEEEEEEc
Confidence                455555556654   2 2344544443

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.11  E-value=0.00096  Score=52.85  Aligned_cols=69  Identities=17%  Similarity=0.224  Sum_probs=51.5

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--C-ccEEEechhh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--P-ADAVVLKWIL  265 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~-~D~i~~~~vL  265 (307)
                      -.++++.|+|||.|.++.+  -.+|.. .++|+|+ |+.++.+.+    ..-.+.+.+.|+.++.+  + ||..++.-.+
T Consensus        47 iEgkkl~DLgcgcGmLs~a--~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIA--FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF  124 (185)
T ss_pred             ccCcchhhhcCchhhhHHH--hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence            3467899999999999944  344444 6899999 888888876    34456889999988544  2 8888776654

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.10  E-value=0.0013  Score=54.41  Aligned_cols=92  Identities=20%  Similarity=0.248  Sum_probs=72.0

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCCCccEEEechhhccCCh
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIPPADAVVLKWILHDWND  270 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p~~D~i~~~~vLh~~~~  270 (307)
                      ..+.|+|.|+|-++.-.++.  .-+++.++. |....-|.+     ...+++.+.+|..+ ++..+|+++|-+.=--+-+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~  111 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE  111 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence            46899999999988777766  458999998 666666665     46789999999998 6777999988775444455


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEE
Q 037127          271 EECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      ++-+..++.+.+.|+.   +++++
T Consensus       112 E~qVpV~n~vleFLr~---d~tii  132 (252)
T COG4076         112 EKQVPVINAVLEFLRY---DPTII  132 (252)
T ss_pred             ccccHHHHHHHHHhhc---CCccc
Confidence            5567899999998887   67665

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.10  E-value=0.0047  Score=51.54  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=73.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCCCccEEEechhhccC
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIPPADAVVLKWILHDW  268 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~  268 (307)
                      .-..++|||+|.|+|..++.-++.. ...++..|. |.....++-    ..-.|.|...|..-+-|.+|+++.+-+.++-
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~  155 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH  155 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence            4567899999999999999888874 235666676 444443332    4556888888887755579999999999865


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +.  +.+++. ....|..  .|..++|.++-++
T Consensus       156 ~~--a~~l~~-~~~~l~~--~g~~vlvgdp~R~  183 (218)
T COG3897         156 TE--ADRLIP-WKDRLAE--AGAAVLVGDPGRA  183 (218)
T ss_pred             hH--HHHHHH-HHHHHHh--CCCEEEEeCCCCC
Confidence            54  457777 6666654  2778888887655

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.07  E-value=0.0086  Score=46.90  Aligned_cols=96  Identities=20%  Similarity=0.342  Sum_probs=65.1

Q ss_pred             EEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchhcC--CC---eEEEecCCCC---CCC---CccEEEechhhc
Q 037127          200 LVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLESDL--AN---LKYVGGDMFE---AIP---PADAVVLKWILH  266 (307)
Q Consensus       200 vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~~--~r---v~~~~~d~~~---~~p---~~D~i~~~~vLh  266 (307)
                      ++|+|||+|... .+.+..+. ..++++|. +.++..+....  ..   +.+..+|...   ++.   .+|++ .....+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~  129 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL  129 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence            999999999977 44444433 47788898 55565543311  22   5788888764   333   38999 555554


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ++.+  ....++++.+.++|   +|.+++.......
T Consensus       130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~  160 (257)
T COG0500         130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDG  160 (257)
T ss_pred             hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence            4444  46889999999998   8888887776543

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.00  E-value=0.0021  Score=54.79  Aligned_cols=82  Identities=18%  Similarity=0.235  Sum_probs=56.7

Q ss_pred             EEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--C-ccEEEechhhccCC
Q 037127          200 LVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--P-ADAVVLKWILHDWN  269 (307)
Q Consensus       200 vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~-~D~i~~~~vLh~~~  269 (307)
                      |.||||-.|+....|++...--+++..|+ +.-++.|++      ..++|++..+|-++.++  + +|.|+++.+--   
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG---   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG---   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence            68999999999999999988778999999 777777766      67899999999988654  3 78887766432   


Q ss_pred             hhHHHHHHHHHHHhcc
Q 037127          270 DEECVKILKKCKEAIT  285 (307)
Q Consensus       270 ~~~~~~~L~~~~~~L~  285 (307)
                       .-..+||.+....++
T Consensus        78 -~lI~~ILe~~~~~~~   92 (205)
T PF04816_consen   78 -ELIIEILEAGPEKLS   92 (205)
T ss_dssp             -HHHHHHHHHTGGGGT
T ss_pred             -HHHHHHHHhhHHHhc
Confidence             123455555444443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.96  E-value=0.0045  Score=55.82  Aligned_cols=67  Identities=12%  Similarity=0.073  Sum_probs=55.1

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE  251 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~  251 (307)
                      .++++..+.  ..+...+||.-+|.|+++..+++..|+.+++++|. |.+++.+++    ..+|++++.++|.+
T Consensus         9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006         9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            355666555  45567899999999999999999988789999999 888888876    34699999998875

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=96.94  E-value=0.00089  Score=49.09  Aligned_cols=58  Identities=21%  Similarity=0.281  Sum_probs=47.3

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      +.|++.|...+++.|+.+||+.+|+   +...++|.|..|...|++.+.+.         ++.|++++..
T Consensus         8 ~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~---------~~~y~l~~~~   65 (91)
T smart00346        8 LAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ---------NGRYRLGPKV   65 (91)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC---------CCceeecHHH
Confidence            4456666654368999999999999   67999999999999999998742         4789998754

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=96.88  E-value=0.0012  Score=61.54  Aligned_cols=52  Identities=15%  Similarity=0.237  Sum_probs=44.0

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE  251 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~  251 (307)
                      .+|||++||+|.++..+++...  +++++|. +.+++.+++     ..++++|+.+|..+
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            4799999999999999998864  7999999 788888776     34589999999865

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=96.81  E-value=0.0017  Score=45.06  Aligned_cols=59  Identities=22%  Similarity=0.269  Sum_probs=46.5

Q ss_pred             HhCCcccccccCCC-CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127           36 VELSIPDIINKHGK-PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN  105 (307)
Q Consensus        36 ~~lglfd~L~~~~~-~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~  105 (307)
                      .+-.|+..|...|+ ++|+.+||+.+|+   +...+.|+|..|...|+++....        ..+.|.++.
T Consensus         7 ~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~--------~~~~W~i~~   66 (68)
T smart00550        7 LEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGG--------TPPLWKLTD   66 (68)
T ss_pred             HHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC--------CCCceEeec
Confidence            34556777776644 3999999999999   67899999999999999998752        236787764

Helix-turn-helix-containing domain. Also known as Zab.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.80  E-value=0.0074  Score=54.83  Aligned_cols=102  Identities=17%  Similarity=0.246  Sum_probs=65.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHH-------CCCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCCC--CC--
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKA-------FPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEA--IP--  254 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~--~p--  254 (307)
                      .....+|+|-.||+|.++.++.+.       .+..+++|+|+ +.++..+.-       ......+..+|.+..  ..  
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~  123 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN  123 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence            345668999999999999998874       47789999999 666555543       133346888898762  22  


Q ss_pred             -CccEEEechhh--ccCCh-----------------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          255 -PADAVVLKWIL--HDWND-----------------EECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       255 -~~D~i~~~~vL--h~~~~-----------------~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                       .+|+|++.=..  ..|.+                 ..-..++.++.+.|++   +|++.++=+
T Consensus       124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Ilp  184 (311)
T PF02384_consen  124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIILP  184 (311)
T ss_dssp             --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEec
Confidence             48988765432  11111                 1113588999999998   898765543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=96.79  E-value=0.00074  Score=45.80  Aligned_cols=55  Identities=20%  Similarity=0.294  Sum_probs=45.6

Q ss_pred             HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +.+|..-.++.|++.|... +|.|+.|||+.+|+   +...+.+.|+.|...|+++...
T Consensus         4 ~~aL~~p~R~~Il~~L~~~-~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~   58 (61)
T PF12840_consen    4 FKALSDPTRLRILRLLASN-GPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER   58 (61)
T ss_dssp             HHHHTSHHHHHHHHHHHHC-STBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHhCCHHHHHHHHHHhcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence            4555666777888888432 89999999999999   6789999999999999999876

...

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=96.78  E-value=0.015  Score=55.92  Aligned_cols=101  Identities=19%  Similarity=0.247  Sum_probs=71.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CCC-CccEEE--
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIP-PADAVV--  260 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p-~~D~i~--  260 (307)
                      .....+|||+++|.|.=+..++....+ -.++..|+ +.-++.+++     ...+|.+...|...   ..+ .||.|+  
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD  190 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD  190 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence            356679999999999999999988754 47899998 544444443     34567888788664   234 489998  


Q ss_pred             --ech---------hhccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEe
Q 037127          261 --LKW---------ILHDWNDEEC-------VKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       261 --~~~---------vLh~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                        |+.         +...|+.++.       .+||.++.+.|+|   ||+|+-..
T Consensus       191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYST  242 (470)
T PRK11933        191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYST  242 (470)
T ss_pred             CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEC
Confidence              442         2334555433       6799999999999   88775433

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=96.77  E-value=0.0076  Score=50.29  Aligned_cols=101  Identities=17%  Similarity=0.227  Sum_probs=66.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCe---------EEEecc-hHHHHhchh------cCCCeEEEec
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLE---------CTDFDL-PHVVNGLES------DLANLKYVGG  247 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~---------~~~~Dl-~~~~~~a~~------~~~rv~~~~~  247 (307)
                      ..++....  +.+...|+|-=||+|.++++.+...++..         +++.|. +.+++.++.      ....|.+...
T Consensus        18 ~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~   95 (179)
T PF01170_consen   18 AALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW   95 (179)
T ss_dssp             HHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred             HHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence            33444444  45567899999999999999988877776         899999 888888776      4567999999


Q ss_pred             CCCC-CCC--CccEEEechhhcc-CCh-hHH----HHHHHHHHHhccC
Q 037127          248 DMFE-AIP--PADAVVLKWILHD-WND-EEC----VKILKKCKEAITS  286 (307)
Q Consensus       248 d~~~-~~p--~~D~i~~~~vLh~-~~~-~~~----~~~L~~~~~~L~p  286 (307)
                      |+.+ +.+  .+|+|++.-..-. ... .+.    ..+++.+++++++
T Consensus        96 D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen   96 DARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             -GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             chhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            9998 533  4898888765432 222 122    3567778888885

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=96.76  E-value=0.0044  Score=57.43  Aligned_cols=52  Identities=17%  Similarity=0.272  Sum_probs=44.3

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE  251 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~  251 (307)
                      .+|||++||+|.++..+++...  +++++|. +++++.+++     ..++++|+.+|+.+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            4699999999999999998863  8999999 888888876     34579999999865

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional

Probab=96.69  E-value=0.0034  Score=48.49  Aligned_cols=69  Identities=19%  Similarity=0.172  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127           27 INSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA  106 (307)
Q Consensus        27 ~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~  106 (307)
                      ..+++|.--.++.|+..|... ++.++.|||+.+++   .+..+.+.|+.|...|+++....+       ..-.|++++.
T Consensus         8 ~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r~G-------r~~~Y~l~~~   76 (117)
T PRK10141          8 QLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRKQG-------KWVHYRLSPH   76 (117)
T ss_pred             HHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEEc-------CEEEEEECch
Confidence            456677777888899988753 68999999999999   578999999999999999988731       1234887653

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.64  E-value=0.0022  Score=59.32  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=79.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~v  264 (307)
                      .....++|+|||.|.....+..- ....++++|. +.-+.++..      ...+..++.+|+.+ +++  .+|.+.+..+
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~  187 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV  187 (364)
T ss_pred             cccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence            33447899999999999888764 4568899998 444444433      45666778899998 565  4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      .-+.++.  ...+++++++++|   ||..++.|.+...
T Consensus       188 ~~~~~~~--~~~y~Ei~rv~kp---GG~~i~~e~i~~~  220 (364)
T KOG1269|consen  188 VCHAPDL--EKVYAEIYRVLKP---GGLFIVKEWIKTA  220 (364)
T ss_pred             cccCCcH--HHHHHHHhcccCC---CceEEeHHHHHhh
Confidence            8888886  4889999999999   8998888776543

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=96.64  E-value=0.0017  Score=57.12  Aligned_cols=59  Identities=24%  Similarity=0.354  Sum_probs=48.2

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      +.|+++|...+.++++.|||+++|+   +...+.|+|..|+..||++.++.         +++|++++..-
T Consensus         7 l~iL~~l~~~~~~l~l~ela~~~gl---pksT~~RlL~tL~~~G~v~~d~~---------~g~Y~Lg~~~~   65 (246)
T COG1414           7 LAILDLLAEGPGGLSLAELAERLGL---PKSTVHRLLQTLVELGYVEQDPE---------DGRYRLGPRLL   65 (246)
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCcEeehHHHH
Confidence            4566777753345679999999999   57899999999999999999963         57999998543

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.61  E-value=0.0087  Score=52.08  Aligned_cols=103  Identities=18%  Similarity=0.168  Sum_probs=70.0

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--CccEEEechhhc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVVLKWILH  266 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh  266 (307)
                      ...+.+|+|||||-==++.-.....|+.++++.|+ ...++....    ...+.+....|.....|  .+|+.++--++|
T Consensus       103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp  182 (251)
T PF07091_consen  103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP  182 (251)
T ss_dssp             S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred             CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence            34588999999998877777778888899999999 667777665    67788888899999655  489999999999


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      .+...+. ..--++.+.+..    -.++|.-+...
T Consensus       183 ~le~q~~-g~g~~ll~~~~~----~~~vVSfPtrS  212 (251)
T PF07091_consen  183 CLERQRR-GAGLELLDALRS----PHVVVSFPTRS  212 (251)
T ss_dssp             HHHHHST-THHHHHHHHSCE----SEEEEEEES--
T ss_pred             HHHHHhc-chHHHHHHHhCC----CeEEEeccccc
Confidence            8766542 333445556653    46666666543

>PRK11569 transcriptional repressor IclR; Provisional

Probab=96.57  E-value=0.002  Score=57.54  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=48.1

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      +.|+++|.+.+++.|+.|||+.+|+   +...+.|+|..|...|||+.++.         .++|++.+...
T Consensus        31 l~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~---------~~~Y~lG~~l~   89 (274)
T PRK11569         31 LKLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE---------LGHWAIGAHAF   89 (274)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCeEecCHHHH
Confidence            3455666554478999999999999   67899999999999999998753         58999987644

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=96.53  E-value=0.0024  Score=57.02  Aligned_cols=59  Identities=17%  Similarity=0.312  Sum_probs=48.2

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      +.|++.|...+++.|+.|||+.+|+   +...+.|+|..|...|||.+++.         .++|++.+...
T Consensus        28 l~IL~~~~~~~~~~tl~eIa~~lgl---pkStv~RlL~tL~~~G~l~~~~~---------~~~Y~lG~~l~   86 (271)
T PRK10163         28 IAILQYLEKSGGSSSVSDISLNLDL---PLSTTFRLLKVLQAADFVYQDSQ---------LGWWHIGLGVF   86 (271)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCeEEecHHHH
Confidence            4456666654468999999999999   57899999999999999998753         58899997543

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=96.49  E-value=0.0025  Score=56.09  Aligned_cols=58  Identities=17%  Similarity=0.254  Sum_probs=47.9

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL  109 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~  109 (307)
                      +.|++.|...+.+.|+.|||+.+|+   +...+.|+|..|...||++++           +++|++.+.-..
T Consensus        12 l~IL~~l~~~~~~~~l~eia~~lgl---pksT~~RlL~tL~~~G~l~~~-----------~~~Y~lG~~~~~   69 (248)
T TIGR02431        12 LAVIEAFGAERPRLTLTDVAEATGL---TRAAARRFLLTLVELGYVTSD-----------GRLFWLTPRVLR   69 (248)
T ss_pred             HHHHHHHhcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC-----------CCEEEecHHHHH
Confidence            4566666654478999999999999   578999999999999999975           478999985443

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=96.48  E-value=0.0049  Score=44.56  Aligned_cols=49  Identities=18%  Similarity=0.420  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      ++.|.+|||+.+++   ++..+++++..|...|+++...        |-+|.|.++...+
T Consensus        24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~--------G~~GGy~L~~~~~   72 (83)
T PF02082_consen   24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSR--------GRGGGYRLARPPE   72 (83)
T ss_dssp             C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET--------STTSEEEESS-CC
T ss_pred             CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecC--------CCCCceeecCCHH
Confidence            56999999999999   6899999999999999998875        2358899886554

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.46  E-value=0.035  Score=56.28  Aligned_cols=116  Identities=10%  Similarity=0.076  Sum_probs=74.2

Q ss_pred             hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC------------------------------------------C
Q 037127          182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF------------------------------------------P  219 (307)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~------------------------------------------p  219 (307)
                      ++..++....| ..+...++|-.||+|.++++.+...                                          .
T Consensus       177 lAaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~  255 (702)
T PRK11783        177 LAAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL  255 (702)
T ss_pred             HHHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence            34455554443 2446789999999999999886531                                          1


Q ss_pred             CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC----CccEEEechhhc-cCCh-hHHHHHHHHHHHhcc
Q 037127          220 NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP----PADAVVLKWILH-DWND-EECVKILKKCKEAIT  285 (307)
Q Consensus       220 ~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p----~~D~i~~~~vLh-~~~~-~~~~~~L~~~~~~L~  285 (307)
                      ..+++++|+ +.+++.|+.      ..++|.|..+|+.+ +.+    .+|+|+++=..- .+.+ .+...+-+.+.+.++
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk  335 (702)
T PRK11783        256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK  335 (702)
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence            236899999 888888876      45689999999987 322    389887774332 2332 334445455555554


Q ss_pred             CCCCCcEEEEEee
Q 037127          286 SNSKIGKVIIIDM  298 (307)
Q Consensus       286 p~~~gg~lli~e~  298 (307)
                      ..-+|+++.++..
T Consensus       336 ~~~~g~~~~llt~  348 (702)
T PRK11783        336 QQFGGWNAALFSS  348 (702)
T ss_pred             HhCCCCeEEEEeC
Confidence            1001777777653

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.41  E-value=0.016  Score=48.04  Aligned_cols=99  Identities=21%  Similarity=0.328  Sum_probs=61.4

Q ss_pred             HhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEec-CCCCC---------CC--
Q 037127          188 HKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGG-DMFEA---------IP--  254 (307)
Q Consensus       188 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~-d~~~~---------~p--  254 (307)
                      ++|. .+.+..+|||+||-.|.++.-..++. |+-.+.++|+-.+.     ..+.+.++++ |+.+|         .|  
T Consensus        62 dKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r  135 (232)
T KOG4589|consen   62 DKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----PPEGATIIQGNDVTDPETYRKIFEALPNR  135 (232)
T ss_pred             hhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence            3444 35667899999999999999888776 99899999984332     2344556666 66653         34  


Q ss_pred             CccEEEechhh---------ccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          255 PADAVVLKWIL---------HDWNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       255 ~~D~i~~~~vL---------h~~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      .+|+|+.-+.=         |+-.-+-|...|.-+...+.|   +|.++.
T Consensus       136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvc  182 (232)
T KOG4589|consen  136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVC  182 (232)
T ss_pred             cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEE
Confidence            37877654421         111222344444444455566   666554

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=96.39  E-value=0.017  Score=48.40  Aligned_cols=98  Identities=11%  Similarity=0.109  Sum_probs=67.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC------CC-CccEEEe
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA------IP-PADAVVL  261 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~------~p-~~D~i~~  261 (307)
                      ...++||+=||+|.++.+.+.+. ..+++.+|. +..+...++      ..+++..+..|.+..      .. .||+|++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            46789999999999999998885 347999999 677776665      345799999997652      12 5999988


Q ss_pred             chhhccCChhH-HHHHHHHHH--HhccCCCCCcEEEEEeeecC
Q 037127          262 KWILHDWNDEE-CVKILKKCK--EAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       262 ~~vLh~~~~~~-~~~~L~~~~--~~L~p~~~gg~lli~e~~~~  301 (307)
                      -=.-.   ... ..++|..+.  ..|++    +.++|+|.-..
T Consensus       121 DPPY~---~~~~~~~~l~~l~~~~~l~~----~~~ii~E~~~~  156 (183)
T PF03602_consen  121 DPPYA---KGLYYEELLELLAENNLLNE----DGLIIIEHSKK  156 (183)
T ss_dssp             --STT---SCHHHHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred             CCCcc---cchHHHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence            74433   222 256677766  67786    67888888655

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=96.32  E-value=0.0037  Score=55.31  Aligned_cols=57  Identities=19%  Similarity=0.348  Sum_probs=46.7

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      .|++.|... ++.|+.|||+.+|+   +...+.|+|..|...||+++.+.         .++|++.+...
T Consensus        18 ~IL~~l~~~-~~l~l~eia~~lgl---~kstv~Rll~tL~~~G~l~~~~~---------~~~Y~lG~~~~   74 (257)
T PRK15090         18 GILQALGEE-REIGITELSQRVMM---SKSTVYRFLQTMKTLGYVAQEGE---------SEKYSLTLKLF   74 (257)
T ss_pred             HHHHHhhcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCcEEecHHHH
Confidence            445555543 58999999999999   57899999999999999998742         58899998654

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=96.32  E-value=0.0035  Score=55.64  Aligned_cols=62  Identities=19%  Similarity=0.275  Sum_probs=49.6

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +.|++.|...++++|+.|||+.+|+   +...+.|+|..|...|++++.+.         .++|++++....+.
T Consensus        14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~---------~~~Y~Lg~~~~~l~   75 (263)
T PRK09834         14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS---------DDSFRLTLKVRQLS   75 (263)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC---------CCcEEEcHHHHHHH
Confidence            4455666544467999999999999   67899999999999999998753         57899998665443

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=0.03  Score=48.52  Aligned_cols=98  Identities=19%  Similarity=0.300  Sum_probs=74.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCC----CeEEEecc-hHHHHhc-hh-----cCCCeEEEecCCCCC---CCC---cc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPN----LECTDFDL-PHVVNGL-ES-----DLANLKYVGGDMFEA---IPP---AD  257 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~----~~~~~~Dl-~~~~~~a-~~-----~~~rv~~~~~d~~~~---~p~---~D  257 (307)
                      -+...++|+|.|+..=+..|+..+.+    ++.+-+|+ ..+++.. +.     ..-.|.-+++|+..+   .|.   ==
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl  156 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL  156 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence            34778999999999888888877766    78999999 4444332 22     333466677888662   442   24


Q ss_pred             EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      .+++...|-++++++|..+|.+++.+|.|   |..+++
T Consensus       157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~Ll  191 (321)
T COG4301         157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLL  191 (321)
T ss_pred             EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEE
Confidence            56788899999999999999999999999   766665

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=96.28  E-value=0.0076  Score=51.69  Aligned_cols=93  Identities=13%  Similarity=0.161  Sum_probs=69.0

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCC---CCC--CccEEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFE---AIP--PADAVV  260 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~---~~p--~~D~i~  260 (307)
                      .+...+|||.=.|-|+++++.+++. ..+++-++- |.|++.|.-       ...+|+++.||..+   .++  .+|+|+
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi  210 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII  210 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence            3467899999999999999999983 237888887 888887753       23478999999987   455  388774


Q ss_pred             -----echhhccCChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127          261 -----LKWILHDWNDEECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       261 -----~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                           ++..-+-+    ...+-++++++|+|   ||+++
T Consensus       211 HDPPRfS~AgeLY----seefY~El~RiLkr---gGrlF  242 (287)
T COG2521         211 HDPPRFSLAGELY----SEEFYRELYRILKR---GGRLF  242 (287)
T ss_pred             eCCCccchhhhHh----HHHHHHHHHHHcCc---CCcEE
Confidence                 12222222    34788999999999   89886

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.003  Score=51.00  Aligned_cols=101  Identities=19%  Similarity=0.215  Sum_probs=73.8

Q ss_pred             CCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchh--------cCCCeEEEecCCCCC-----CCCccEEE
Q 037127          196 GLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--------DLANLKYVGGDMFEA-----IPPADAVV  260 (307)
Q Consensus       196 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~~-----~p~~D~i~  260 (307)
                      .+.+||++||| +|..+..++..-|...+.+.|- ...++..++        ..++++.+..+....     +..||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            35789999999 6777778888889889999997 555565554        345565555555542     22599999


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      ++-++. | ++....+.+.+...|+|   .|+-+++.+-+.
T Consensus       109 aADClF-f-dE~h~sLvdtIk~lL~p---~g~Al~fsPRRg  144 (201)
T KOG3201|consen  109 AADCLF-F-DEHHESLVDTIKSLLRP---SGRALLFSPRRG  144 (201)
T ss_pred             eccchh-H-HHHHHHHHHHHHHHhCc---ccceeEecCccc
Confidence            999985 3 44456888999999999   788777766554

>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities

Probab=96.25  E-value=0.0023  Score=40.89  Aligned_cols=44  Identities=20%  Similarity=0.406  Sum_probs=37.4

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQ   85 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~   85 (307)
                      ++.|...|..  ++.++.|||+.+|+   +...+.+.|+.|...|++++
T Consensus         4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~   47 (47)
T PF01022_consen    4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK   47 (47)
T ss_dssp             HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence            3456667775  89999999999999   68999999999999999874

One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=96.19  E-value=0.027  Score=38.44  Aligned_cols=44  Identities=18%  Similarity=0.322  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN  105 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~  105 (307)
                      .+.|..+||+.+|+   +...+.+.|+.|...|++....          .+.|.++|
T Consensus        24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~----------~~~~~l~~   67 (67)
T cd00092          24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG----------RGKYRVNP   67 (67)
T ss_pred             CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC----------CCeEEeCC
Confidence            68999999999999   6799999999999999999874          37788764

>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A

Probab=96.17  E-value=0.0059  Score=42.01  Aligned_cols=53  Identities=26%  Similarity=0.386  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      +++.+..+||+.+++   +...+.+.++.|...|++++.....    +.-...|++|+.|
T Consensus        16 ~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~~~----d~R~~~~~LT~~G   68 (68)
T PF13463_consen   16 DGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERDPH----DKRSKRYRLTPAG   68 (68)
T ss_dssp             TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEESS----CTTSEEEEE-HHH
T ss_pred             CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCCC----cCCeeEEEeCCCC
Confidence            389999999999999   6789999999999999998876311    1112368988865

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.16  E-value=0.025  Score=48.46  Aligned_cols=97  Identities=16%  Similarity=0.223  Sum_probs=70.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC---------CCc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI---------PPA  256 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~---------p~~  256 (307)
                      +-++++++|||.=+|+.+...+.+.|. -+++.+|. +...+.+.+      ....|+++.+...+.+         ..|
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf  150 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF  150 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence            345789999999999999999999986 57899998 444444443      6789999999988732         137


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      |++++-    +|-+. ......++.+.+++    |.|+++|.+
T Consensus       151 DfaFvD----adK~n-Y~~y~e~~l~Llr~----GGvi~~DNv  184 (237)
T KOG1663|consen  151 DFAFVD----ADKDN-YSNYYERLLRLLRV----GGVIVVDNV  184 (237)
T ss_pred             eEEEEc----cchHH-HHHHHHHHHhhccc----ccEEEEecc
Confidence            877653    23333 45788899999998    555555553

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.12  E-value=0.016  Score=52.30  Aligned_cols=67  Identities=18%  Similarity=0.189  Sum_probs=51.2

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE  251 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~  251 (307)
                      .++++..+.  ..+...+||.--|.|+++.++++.+|+.+++++|. |.+++.+++    ..+|+.++.++|.+
T Consensus         9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~   80 (310)
T PF01795_consen    9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN   80 (310)
T ss_dssp             HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred             HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence            355666655  56667899999999999999999999999999999 888888876    46899999999875

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=96.09  E-value=0.068  Score=47.35  Aligned_cols=102  Identities=20%  Similarity=0.176  Sum_probs=75.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh--------cCCCeEEEecCCCCCC----------C-C
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES--------DLANLKYVGGDMFEAI----------P-P  255 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~~~----------p-~  255 (307)
                      .+...||.+|||-=.....+... ++++++=+|+|++++.=++        ..+++.+++.|+.+..          | .
T Consensus        80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA  158 (260)
T ss_pred             cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence            34567999999977666655322 2578888888998875443        3578999999997421          1 2


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      .-++++-.++.+++.+++..+|+.+.+...|   | ..+++|.+.+
T Consensus       159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---g-s~l~~d~~~~  200 (260)
T TIGR00027       159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP---G-SRLAFDYVRP  200 (260)
T ss_pred             CeeeeecchhhcCCHHHHHHHHHHHHHhCCC---C-cEEEEEeccc
Confidence            4578888899999999999999999998877   4 4555676554

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.06  E-value=0.0079  Score=45.24  Aligned_cols=32  Identities=16%  Similarity=0.284  Sum_probs=27.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL  228 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl  228 (307)
                      .....++|||||+|.+.--|.++  +.++.|+|.
T Consensus        57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~   88 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA   88 (112)
T ss_pred             CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence            34668999999999999888887  778999996

; GO: 0008168 methyltransferase activity

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.03  E-value=0.01  Score=52.30  Aligned_cols=100  Identities=20%  Similarity=0.264  Sum_probs=60.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchh---------------------------------cC
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES---------------------------------DL  239 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~---------------------------------~~  239 (307)
                      .++.++||||||+-.+-  ++...+.. +++..|. +.-.+..++                                 ..
T Consensus        55 ~~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR  132 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR  132 (256)
T ss_dssp             S-EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence            34678999999986553  33333333 3666666 433332221                                 01


Q ss_pred             CCeE-EEecCCCCC--------CCC-ccEEEechhhccC--ChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          240 ANLK-YVGGDMFEA--------IPP-ADAVVLKWILHDW--NDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       240 ~rv~-~~~~d~~~~--------~p~-~D~i~~~~vLh~~--~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      ..|. .+..|..++        .|+ +|++++..+|..-  +.++-.+.++++.+.|||   ||.+++....
T Consensus       133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l  201 (256)
T PF01234_consen  133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVL  201 (256)
T ss_dssp             HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEES
T ss_pred             HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEc
Confidence            1233 667788772        233 9999999999764  345668899999999999   8888877653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=95.95  E-value=0.0049  Score=46.46  Aligned_cols=91  Identities=18%  Similarity=0.299  Sum_probs=39.4

Q ss_pred             EEecCCchHHHHHHHHHCCCC---eEEEecc-h---HHHHhchh--cCCCeEEEecCCCCC---CC--CccEEEechhhc
Q 037127          201 VDVGGATGTVAKAIAKAFPNL---ECTDFDL-P---HVVNGLES--DLANLKYVGGDMFEA---IP--PADAVVLKWILH  266 (307)
Q Consensus       201 lDvGgG~G~~~~~l~~~~p~~---~~~~~Dl-~---~~~~~a~~--~~~rv~~~~~d~~~~---~p--~~D~i~~~~vLh  266 (307)
                      |+||+..|..+..+++..+..   +++++|. +   .+.+..++  ..++++++.++..+-   .+  .+|++++-. -|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH   79 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence            689999999999888876654   6899998 4   23333332  567899999999762   22  588887765 34


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      .  .+.+..-++.+.+.|+|   ||.|++-|
T Consensus        80 ~--~~~~~~dl~~~~~~l~~---ggviv~dD  105 (106)
T PF13578_consen   80 S--YEAVLRDLENALPRLAP---GGVIVFDD  105 (106)
T ss_dssp             ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred             C--HHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence            2  34556789999999998   66666544

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=95.89  E-value=0.018  Score=36.47  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      -+.|..+||+.+|+   +...+.+.|+.|...|+++..
T Consensus         7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~   41 (48)
T smart00419        7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISRE   41 (48)
T ss_pred             eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEe
Confidence            47899999999999   678999999999999999987

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.89  E-value=0.053  Score=53.06  Aligned_cols=67  Identities=12%  Similarity=0.163  Sum_probs=46.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC--------CeEEEecc-hHHHHhchh---cC--CCeEEEecCCCCC--------C
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPN--------LECTDFDL-PHVVNGLES---DL--ANLKYVGGDMFEA--------I  253 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~Dl-~~~~~~a~~---~~--~rv~~~~~d~~~~--------~  253 (307)
                      ...+|+|.+||+|.++..+++..+.        ..++++|+ +..++.++.   ..  -.++....|+...        .
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            4568999999999999999887752        56899999 667776654   11  2345555654431        1


Q ss_pred             CCccEEEec
Q 037127          254 PPADAVVLK  262 (307)
Q Consensus       254 p~~D~i~~~  262 (307)
                      +.||+|+.+
T Consensus       111 ~~fD~IIgN  119 (524)
T TIGR02987       111 DLFDIVITN  119 (524)
T ss_pred             CcccEEEeC
Confidence            258988654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK10857 DNA-binding transcriptional regulator IscR; Provisional

Probab=95.88  E-value=0.018  Score=47.38  Aligned_cols=49  Identities=20%  Similarity=0.337  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      ++.|+++||+.+++   +...+.++|..|...|++....        |..|.|.+..-..
T Consensus        24 ~~vs~~eIA~~~~i---p~~~l~kIl~~L~~aGLv~s~r--------G~~GGy~Lar~p~   72 (164)
T PRK10857         24 GPVPLADISERQGI---SLSYLEQLFSRLRKNGLVSSVR--------GPGGGYLLGKDAS   72 (164)
T ss_pred             CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC--------CCCCCeeccCCHH
Confidence            68999999999999   6899999999999999999864        2356798875433

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=95.83  E-value=0.062  Score=50.13  Aligned_cols=91  Identities=14%  Similarity=0.188  Sum_probs=70.1

Q ss_pred             CeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC--C--CCccEEEechhhc
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA--I--PPADAVVLKWILH  266 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~--~--p~~D~i~~~~vLh  266 (307)
                      .+|||+-||+|..+...+++.++ -+++..|+ |..++.+++     ....+++..+|...-  .  ..||+|.+-=  +
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--f  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--F  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--C
Confidence            58999999999999999998654 47999999 888887766     234688999998762  1  2499888743  2


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                        ..+  ..+|..+.+.+++   +|.++|.-
T Consensus       124 --Gs~--~~fld~al~~~~~---~glL~vTa  147 (374)
T TIGR00308       124 --GTP--APFVDSAIQASAE---RGLLLVTA  147 (374)
T ss_pred             --CCc--HHHHHHHHHhccc---CCEEEEEe
Confidence              221  3788999999987   88888874

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=95.82  E-value=0.0092  Score=42.47  Aligned_cols=49  Identities=14%  Similarity=0.280  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.+..+|+..+++   +...+.+.|..|...|+++..           ++.|.+|+.|+.+.
T Consensus        18 ~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~-----------~~~Y~lTekG~~~l   66 (77)
T PF14947_consen   18 GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK-----------DGKYRLTEKGKEFL   66 (77)
T ss_dssp             T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE-----------TTEEEE-HHHHHHH
T ss_pred             CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC-----------CCEEEECccHHHHH
Confidence            78999999999999   689999999999999999775           59999999998554

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=95.73  E-value=0.045  Score=50.13  Aligned_cols=98  Identities=18%  Similarity=0.191  Sum_probs=78.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC--C-CCccEEEechhh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA--I-PPADAVVLKWIL  265 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~--~-p~~D~i~~~~vL  265 (307)
                      .+.+|||.=+|.|.|+..+++... .+++.+|+ |..++.+++      ..++|+.+.||..+-  . +.+|-|+|...-
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~  266 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK  266 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence            478999999999999999998753 34999999 888887776      567799999999883  3 459999988765


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      .      +.++|-.+.+.+++   ||.+...+.+-.++
T Consensus       267 ~------a~~fl~~A~~~~k~---~g~iHyy~~~~e~~  295 (341)
T COG2520         267 S------AHEFLPLALELLKD---GGIIHYYEFVPEDD  295 (341)
T ss_pred             c------chhhHHHHHHHhhc---CcEEEEEeccchhh
Confidence            1      24677888888887   78888888776654

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=95.72  E-value=0.12  Score=45.50  Aligned_cols=106  Identities=15%  Similarity=0.223  Sum_probs=72.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecch-H----HHHhchh--cCCCeEEEecCCCCC-CC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLP-H----VVNGLES--DLANLKYVGGDMFEA-IP  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~-~----~~~~a~~--~~~rv~~~~~d~~~~-~p  254 (307)
                      ..|+..++  ...+.+|++-|.|+|.++..|++.- |.-+++-+|.. .    +.+..++  ..+.+++...|+... ++
T Consensus        95 a~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~  172 (314)
T KOG2915|consen   95 AMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL  172 (314)
T ss_pred             HHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence            45566666  6778999999999999999999886 66688888883 2    2333333  688999999999873 33


Q ss_pred             ----CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          255 ----PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       255 ----~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                          .+|.|++-.     |.+-  ..+-.++++++..  ||+++-+.++.
T Consensus       173 ~ks~~aDaVFLDl-----PaPw--~AiPha~~~lk~~--g~r~csFSPCI  213 (314)
T KOG2915|consen  173 IKSLKADAVFLDL-----PAPW--EAIPHAAKILKDE--GGRLCSFSPCI  213 (314)
T ss_pred             ccccccceEEEcC-----CChh--hhhhhhHHHhhhc--CceEEeccHHH
Confidence                489888753     3221  2233344466651  56777666554

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=95.71  E-value=0.0029  Score=43.80  Aligned_cols=46  Identities=22%  Similarity=0.374  Sum_probs=38.6

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ..++..|-.. ++.|+.+||+.+|+   +...+.+.|+.|...|++++..
T Consensus        11 ~~vy~~Ll~~-~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~   56 (68)
T PF01978_consen   11 AKVYLALLKN-GPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE   56 (68)
T ss_dssp             HHHHHHHHHH-CHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence            3444444332 79999999999999   6899999999999999999986

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=95.68  E-value=0.21  Score=42.58  Aligned_cols=99  Identities=14%  Similarity=0.150  Sum_probs=72.8

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh----cCCCeEEEecCCCC---CCC--CccEEEechhh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES----DLANLKYVGGDMFE---AIP--PADAVVLKWIL  265 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~~~rv~~~~~d~~~---~~p--~~D~i~~~~vL  265 (307)
                      .++.+||.||=|-|.....+.++-|..+.++---|.|.++.+.    ..++|....|-..+   .+|  .||-|+.--.-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~  179 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS  179 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence            5678999999999999999998888877666555999999987    46677777774433   445  37766554432


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ..  -++...+-+.+.+.|||   +|.+-.+..
T Consensus       180 e~--yEdl~~~hqh~~rLLkP---~gv~SyfNg  207 (271)
T KOG1709|consen  180 EL--YEDLRHFHQHVVRLLKP---EGVFSYFNG  207 (271)
T ss_pred             hH--HHHHHHHHHHHhhhcCC---CceEEEecC
Confidence            22  24567888999999999   787765543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=95.65  E-value=0.035  Score=51.91  Aligned_cols=98  Identities=14%  Similarity=0.171  Sum_probs=75.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchh-------cCCCeEEEecCCCCC----C--C-CccEE
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEA----I--P-PADAV  259 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~----~--p-~~D~i  259 (307)
                      .+++|||+=|=||.++...+..  +. +++.+|+ ..+++-|++       ...++.|+++|.|+-    .  . .||+|
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI  294 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI  294 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence            3889999999999999999987  45 8999999 677888876       357899999999982    1  2 59999


Q ss_pred             Eechhhc------cCCh-hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          260 VLKWILH------DWND-EECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       260 ~~~~vLh------~~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ++-=.-.      -|+- .+-.+++..+.+.|+|   ||.++++..
T Consensus       295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~  337 (393)
T COG1092         295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSC  337 (393)
T ss_pred             EECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence            8743211      1322 2346789999999998   898887754

>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A

Probab=95.60  E-value=0.0043  Score=44.56  Aligned_cols=68  Identities=16%  Similarity=0.266  Sum_probs=48.2

Q ss_pred             HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127           36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL  110 (307)
Q Consensus        36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l  110 (307)
                      ++++|...|... +..++.+|.+.+|+   +...+.+.|..|...|+++....-.   +..-...|++|+.|+..
T Consensus         1 vRl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~---~~~p~t~~~lT~~Gr~~   68 (80)
T PF13601_consen    1 VRLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFE---GRRPRTWYSLTDKGREA   68 (80)
T ss_dssp             HHHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-S---SS--EEEEEE-HHHHHH
T ss_pred             CHHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEecc---CCCCeEEEEECHHHHHH
Confidence            355666666653 68999999999999   6799999999999999999886321   00001249999999843

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=95.56  E-value=0.0088  Score=38.23  Aligned_cols=44  Identities=20%  Similarity=0.320  Sum_probs=36.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCcee
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFA   84 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~   84 (307)
                      +..|+..|.++ +.+|..+||+.+|+   +...+.+.++-|...|+++
T Consensus         5 ~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~   48 (48)
T PF13412_consen    5 QRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE   48 (48)
T ss_dssp             HHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence            34566777775 67999999999999   6899999999999999985

...

>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR

Probab=95.44  E-value=0.042  Score=42.32  Aligned_cols=69  Identities=13%  Similarity=0.184  Sum_probs=52.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD  113 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~  113 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.+.++-|...|++++.....    +.-.-.|.+|+.|+.+...
T Consensus        30 q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~~~----D~R~~~v~LT~~G~~~~~~   98 (118)
T TIGR02337        30 QWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKASN----DQRRVYISLTPKGQALYAS   98 (118)
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccCCC----CCCeeEEEECHhHHHHHHH
Confidence            44566667654 68999999999999   5679999999999999999975210    0011269999999866543

This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.

>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR

Probab=95.26  E-value=0.031  Score=44.35  Aligned_cols=49  Identities=22%  Similarity=0.330  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      ++.|.++||+.+++   ++..++++|..|...|++....        +..|.|.++....
T Consensus        24 ~~~s~~~ia~~~~i---p~~~l~kil~~L~~~glv~s~~--------G~~Ggy~l~~~~~   72 (135)
T TIGR02010        24 GPVTLADISERQGI---SLSYLEQLFAKLRKAGLVKSVR--------GPGGGYQLGRPAE   72 (135)
T ss_pred             CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEe--------CCCCCEeccCCHH
Confidence            68999999999999   6899999999999999998754        2246788876443

This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.23  E-value=0.26  Score=45.72  Aligned_cols=109  Identities=14%  Similarity=0.163  Sum_probs=72.5

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCC---------------------------------------eE
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNL---------------------------------------EC  223 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~---------------------------------------~~  223 (307)
                      +..++..-.  +.+...++|==||+|.++++.+...++.                                       ..
T Consensus       180 AaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~  257 (381)
T COG0116         180 AAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII  257 (381)
T ss_pred             HHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence            445555445  3444689999999999999998877531                                       26


Q ss_pred             EEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechhhcc-CChhHHH-----HHHHHHHHhccCC
Q 037127          224 TDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWILHD-WNDEECV-----KILKKCKEAITSN  287 (307)
Q Consensus       224 ~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~-~~~~~~~-----~~L~~~~~~L~p~  287 (307)
                      ++.|+ +.+++.|+.      ..+.|+|.++|+.. +-|  .+|+++++=.--. +.+++.+     .+.+.+++.++. 
T Consensus       258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~-  336 (381)
T COG0116         258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG-  336 (381)
T ss_pred             EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC-
Confidence            79999 888888876      68899999999986 333  5898887653311 3333222     344555566653 


Q ss_pred             CCCcEEEEE
Q 037127          288 SKIGKVIII  296 (307)
Q Consensus       288 ~~gg~lli~  296 (307)
                        -++.++.
T Consensus       337 --ws~~v~t  343 (381)
T COG0116         337 --WSRYVFT  343 (381)
T ss_pred             --CceEEEE
Confidence              3444443

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.21  E-value=0.16  Score=44.47  Aligned_cols=98  Identities=17%  Similarity=0.128  Sum_probs=64.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh-----------cCCCeEEEecCCCCC------CCC-cc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES-----------DLANLKYVGGDMFEA------IPP-AD  257 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-----------~~~rv~~~~~d~~~~------~p~-~D  257 (307)
                      ...+||++|+|+|..+...+.. ....++.-|.|.++...+.           ....|....-+...+      .|. +|
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALL-LGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHH-hcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            4668999999999666655553 4678999999777665543           233566666555542      234 89


Q ss_pred             EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +++.+.+++.-..  -..++.-++..|..   ++.+++.-..
T Consensus       165 lilasDvvy~~~~--~e~Lv~tla~ll~~---~~~i~l~~~l  201 (248)
T KOG2793|consen  165 LILASDVVYEEES--FEGLVKTLAFLLAK---DGTIFLAYPL  201 (248)
T ss_pred             EEEEeeeeecCCc--chhHHHHHHHHHhc---CCeEEEEEec
Confidence            9999999975333  23566666677875   5655444433

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=95.16  E-value=0.03  Score=44.74  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +++.++.+||+.+++   ++..+.+.++.|...|++....          .+.|++|+.|+.+.
T Consensus        20 ~~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~----------~~~i~LT~~G~~~a   70 (142)
T PRK03902         20 KGYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK----------YRGLVLTPKGKKIG   70 (142)
T ss_pred             CCCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec----------CceEEECHHHHHHH
Confidence            378999999999999   5789999999999999999764          47899999997654

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=95.12  E-value=0.24  Score=42.51  Aligned_cols=95  Identities=13%  Similarity=0.133  Sum_probs=66.7

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHH----hchhcCCCeEEEecCCCCCC------CCccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVN----GLESDLANLKYVGGDMFEAI------PPADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~----~a~~~~~rv~~~~~d~~~~~------p~~D~i~~  261 (307)
                      +.+..+||-+|..+|....++..--. +-.+.+++. |...+    .|+ ..++|--+-.|...|.      +.+|+++.
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~-~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~  149 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK-KRPNIIPILEDARHPEKYRMLVEMVDVIFQ  149 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc-cCCceeeeeccCCChHHhhcccccccEEEe
Confidence            66788999999999999999987664 567888888 54433    333 5778888899998852      24787765


Q ss_pred             chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      --. +  ++ ++.-++.++..-||+   ||.++|.
T Consensus       150 DVa-Q--p~-Qa~I~~~Na~~fLk~---gG~~~i~  177 (229)
T PF01269_consen  150 DVA-Q--PD-QARIAALNARHFLKP---GGHLIIS  177 (229)
T ss_dssp             E-S-S--TT-HHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             cCC-C--hH-HHHHHHHHHHhhccC---CcEEEEE
Confidence            433 2  33 456788889999998   8887765

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.11  E-value=0.062  Score=45.83  Aligned_cols=68  Identities=13%  Similarity=0.144  Sum_probs=54.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC---CccEEEech
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP---PADAVVLKW  263 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p---~~D~i~~~~  263 (307)
                      +..++.||||-.+++...+.+.+|..+++..|+ +.-.+.|.+      ..+|++...+|-+.++-   +.|+++...
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG   93 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG   93 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC
Confidence            444599999999999999999999999999998 544444443      78999999999988543   478876654

>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea

Probab=95.05  E-value=0.022  Score=39.24  Aligned_cols=59  Identities=22%  Similarity=0.339  Sum_probs=45.4

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCC--CcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPS--KTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~--~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      |++.|.+.++|++..+|++.+.....  .++.++|.|++|-..|+..+..          .+.+.+|+.|.
T Consensus         3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g----------~~G~~iT~~G~   63 (66)
T PF08461_consen    3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG----------RQGRIITEKGL   63 (66)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC----------CcccccCHHHH
Confidence            45566666799999999999865322  3589999999999999777654          45667888775

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.05  E-value=0.11  Score=43.43  Aligned_cols=106  Identities=15%  Similarity=0.198  Sum_probs=66.6

Q ss_pred             cccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-h-HHHH-----------hchh-cCCCeEEEecCCCC-CCC-Cc
Q 037127          193 VFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-P-HVVN-----------GLES-DLANLKYVGGDMFE-AIP-PA  256 (307)
Q Consensus       193 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~-~~~~-----------~a~~-~~~rv~~~~~d~~~-~~p-~~  256 (307)
                      .++...+|+|+=.|.|+|+.-|.... +.++++.-. | +...           .+++ ...+++.+..+... ..| +.
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~v-gp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~  123 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAV-GPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKL  123 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhc-CCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcc
Confidence            46778899999999999999887754 233433332 2 2211           1111 23445555554444 222 36


Q ss_pred             cEEEechhhccC-----ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          257 DAVVLKWILHDW-----NDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       257 D~i~~~~vLh~~-----~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      |+++....-|++     ...-+.++-+.++++|||   ||.++|.|.....
T Consensus       124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~p  171 (238)
T COG4798         124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADP  171 (238)
T ss_pred             cccccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccC
Confidence            777665444433     234567899999999999   9999999887654

>PHA00738 putative HTH transcription regulator

Probab=95.03  E-value=0.024  Score=42.60  Aligned_cols=62  Identities=16%  Similarity=0.179  Sum_probs=48.9

Q ss_pred             HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      .++.|++.|.. +++.++.+|++.+++   ....+.+.|++|...|++.....+       ....|++++...
T Consensus        13 tRr~IL~lL~~-~e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK~G-------r~vyY~Ln~~~~   74 (108)
T PHA00738         13 LRRKILELIAE-NYILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYKEG-------RTLYAKIRENSK   74 (108)
T ss_pred             HHHHHHHHHHH-cCCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEEEC-------CEEEEEECCCcc
Confidence            46677777875 247999999999999   689999999999999999999741       123577776543

>COG1959 Predicted transcriptional regulator [Transcription]

Probab=95.02  E-value=0.037  Score=44.77  Aligned_cols=51  Identities=14%  Similarity=0.299  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL  110 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l  110 (307)
                      ++.|+++||+..++   ++..|+++|..|...|+++...        |-.|.|+|+.-...+
T Consensus        24 ~~~s~~~IA~~~~i---s~~~L~kil~~L~kaGlV~S~r--------G~~GGy~Lar~~~~I   74 (150)
T COG1959          24 GPVSSAEIAERQGI---SPSYLEKILSKLRKAGLVKSVR--------GKGGGYRLARPPEEI   74 (150)
T ss_pred             CcccHHHHHHHhCc---CHHHHHHHHHHHHHcCCEEeec--------CCCCCccCCCChHHC
Confidence            48999999999999   6799999999999999999986        336889988654433

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=94.94  E-value=0.35  Score=44.24  Aligned_cols=100  Identities=14%  Similarity=0.142  Sum_probs=73.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEec-CCCC-CCCC--ccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGG-DMFE-AIPP--ADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~-d~~~-~~p~--~D~i~~~~  263 (307)
                      ...+..|||==||||.++++..-.  +++++|.|+ ..++.-++.     ..+...+... |+.. |+++  +|.|..--
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP  272 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP  272 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence            345678999999999999998877  889999999 678877776     1344545555 8877 6774  88887643


Q ss_pred             hh------ccCC-hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          264 IL------HDWN-DEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       264 vL------h~~~-~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      .-      .--. ++--.++|+.+.++|++   ||++++.-+
T Consensus       273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p  311 (347)
T COG1041         273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP  311 (347)
T ss_pred             CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence            22      1111 33456899999999998   899988776

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=94.89  E-value=0.017  Score=39.19  Aligned_cols=45  Identities=16%  Similarity=0.224  Sum_probs=35.8

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |.+.|....+|++..|||+.+|+   +...++++|..|...|.+++.+
T Consensus         5 Il~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~   49 (62)
T PF04703_consen    5 ILEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP   49 (62)
T ss_dssp             HHHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred             HHHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence            33444432379999999999999   6899999999999999999875

>PRK03573 transcriptional regulator SlyA; Provisional

Probab=94.89  E-value=0.16  Score=40.59  Aligned_cols=63  Identities=19%  Similarity=0.237  Sum_probs=48.4

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      ++..|...+++.|..+||+.+++   +...+.++++.|...|++++...       ..+.   .+.+|+.|+.+..
T Consensus        36 vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~-------~~DrR~~~l~LT~~G~~~~~  101 (144)
T PRK03573         36 TLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTC-------ASDRRAKRIKLTEKAEPLIS  101 (144)
T ss_pred             HHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecC-------CCCcCeeeeEEChHHHHHHH
Confidence            34555433346899999999999   67899999999999999999862       1222   5789999886654

>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator)

Probab=94.86  E-value=0.041  Score=43.22  Aligned_cols=49  Identities=16%  Similarity=0.377  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      ++.|.++||+.+++   +...++++|+.|...|++....        +..|.|.++.-..
T Consensus        24 ~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~--------g~~ggy~l~~~~~   72 (132)
T TIGR00738        24 GPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVR--------GPGGGYRLARPPE   72 (132)
T ss_pred             CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecc--------CCCCCccCCCCHH
Confidence            59999999999999   6899999999999999998753        1246788875444

This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.82  E-value=0.36  Score=42.87  Aligned_cols=98  Identities=18%  Similarity=0.246  Sum_probs=69.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchH-H-------HHhch---h--------------------------
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPH-V-------VNGLE---S--------------------------  237 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~-~-------~~~a~---~--------------------------  237 (307)
                      ....+||-=|||-|.++-+++++  +..+.+-+.+. |       +....   +                          
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP  132 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP  132 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence            34578999999999999999998  55666666632 1       11100   0                          


Q ss_pred             ---------cCCCeEEEecCCCC--CCC----CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          238 ---------DLANLKYVGGDMFE--AIP----PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       238 ---------~~~rv~~~~~d~~~--~~p----~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                               ...++++..|||.+  +.+    .+|+|+....+-  +.+.....|+.+.+.|||   ||.++=+-+.
T Consensus       133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkp---gG~WIN~GPL  204 (270)
T PF07942_consen  133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKP---GGYWINFGPL  204 (270)
T ss_pred             CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhcc---CCEEEecCCc
Confidence                     13468899999988  223    489998886664  344578999999999999   8866544443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.77  E-value=0.13  Score=41.08  Aligned_cols=99  Identities=15%  Similarity=0.158  Sum_probs=64.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCCCccEEEechhhc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVVLKWILH  266 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~i~~~~vLh  266 (307)
                      .+..+.+|+|.|.|....+.++.. -...+++++ |..+..++-      ...+.+|...|+++ ++.+|..++...+=.
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes  149 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAES  149 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHH
Confidence            344789999999999998888875 356799999 766665542      57789999999998 555544333322211


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      -++     .+-.+++.-|+.   +.+++-.-+-+|.
T Consensus       150 ~m~-----dLe~KL~~E~p~---nt~vvacRFPLP~  177 (199)
T KOG4058|consen  150 VMP-----DLEDKLRTELPA---NTRVVACRFPLPT  177 (199)
T ss_pred             HHh-----hhHHHHHhhCcC---CCeEEEEecCCCc
Confidence            122     233445555666   6777766655553

>KOG2730 consensus Methylase [General function prediction only]

Probab=94.74  E-value=0.023  Score=48.37  Aligned_cols=54  Identities=17%  Similarity=0.240  Sum_probs=44.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE  251 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~  251 (307)
                      ....|+|.-||.|+-.++++..+|  .++.+|+ |.-+..|+.      ..+||+|++||+++
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld  154 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD  154 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence            456899999999999999999977  5788888 655777765      56799999999986

>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=94.74  E-value=0.076  Score=34.78  Aligned_cols=43  Identities=30%  Similarity=0.327  Sum_probs=34.7

Q ss_pred             HHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHH
Q 037127           28 NSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRIL   77 (307)
Q Consensus        28 ~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L   77 (307)
                      .-.+|.+|++.|-||. +   ...|+.|||+.+|+   ....+...||-.
T Consensus         5 Q~e~L~~A~~~GYfd~-P---R~~tl~elA~~lgi---s~st~~~~LRra   47 (53)
T PF04967_consen    5 QREILKAAYELGYFDV-P---RRITLEELAEELGI---SKSTVSEHLRRA   47 (53)
T ss_pred             HHHHHHHHHHcCCCCC-C---CcCCHHHHHHHhCC---CHHHHHHHHHHH
Confidence            4578999999999997 3   46999999999999   456666666643

This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=94.70  E-value=0.11  Score=46.26  Aligned_cols=102  Identities=16%  Similarity=0.156  Sum_probs=72.5

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---CC--CCcc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AI--PPAD  257 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~--p~~D  257 (307)
                      ...+++++=||||-|.+++..+++ +.+ .+..+|. ..+++...+         ..++|.++.||-+.   ..  ..+|
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d  197 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD  197 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence            456889999999999999999987 665 4677777 556665554         47899999999765   23  3599


Q ss_pred             EEEechhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          258 AVVLKWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +|+.-.-=-.-|...  -..+..-+.++||+   +|.+++....
T Consensus       198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ec  238 (337)
T KOG1562|consen  198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQGEC  238 (337)
T ss_pred             EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEecce
Confidence            988754332222211  13466677889998   8988887644

>PRK11050 manganese transport regulator MntR; Provisional

Probab=94.59  E-value=0.36  Score=39.06  Aligned_cols=58  Identities=21%  Similarity=0.328  Sum_probs=47.1

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      |...+.. +++.+..+||+.+++   +...+.++++.|...|++....          ...+.+|+.|+.+.
T Consensus        42 I~~~l~~-~~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~----------~~~v~LT~~G~~l~   99 (152)
T PRK11050         42 IADLIAE-VGEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP----------YRGVFLTPEGEKLA   99 (152)
T ss_pred             HHHHHHh-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec----------CCceEECchHHHHH
Confidence            3445544 368999999999999   6799999999999999999865          35788998887654

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=94.56  E-value=0.02  Score=39.75  Aligned_cols=44  Identities=18%  Similarity=0.392  Sum_probs=36.1

Q ss_pred             ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127           41 PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL   88 (307)
Q Consensus        41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~   88 (307)
                      .+.|... +.+|+.+||..+++   ++..++.+|+.|...|.+.+...
T Consensus         6 ~~~l~~~-~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~~   49 (69)
T PF09012_consen    6 RDYLRER-GRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVDM   49 (69)
T ss_dssp             HHHHHHS--SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEEE
T ss_pred             HHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEecC
Confidence            4556654 78999999999999   68999999999999999999864

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.53  E-value=0.17  Score=46.80  Aligned_cols=111  Identities=12%  Similarity=0.226  Sum_probs=75.9

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc---hHHHHhchh------------cCCCeEEEecCCC
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL---PHVVNGLES------------DLANLKYVGGDMF  250 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl---~~~~~~a~~------------~~~rv~~~~~d~~  250 (307)
                      +++.+.  +.......|+|+|.|.....++.......-+|+++   |.-+.....            -...++.+.++|.
T Consensus       184 i~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~  261 (419)
T KOG3924|consen  184 IVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL  261 (419)
T ss_pred             HHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence            344444  55667899999999999888776655445566665   544443332            2455888999998


Q ss_pred             CC------CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127          251 EA------IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       251 ~~------~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~  304 (307)
                      .+      ++.+++|+..++..  +++...+ +.++..-+++   |-+|+-.+++.+-++
T Consensus       262 ~~~~v~eI~~eatvi~vNN~~F--dp~L~lr-~~eil~~ck~---gtrIiS~~~L~~r~r  315 (419)
T KOG3924|consen  262 DPKRVTEIQTEATVIFVNNVAF--DPELKLR-SKEILQKCKD---GTRIISSKPLVPRPR  315 (419)
T ss_pred             CHHHHHHHhhcceEEEEecccC--CHHHHHh-hHHHHhhCCC---cceEecccccccccc
Confidence            84      34699999999884  5543323 3467777787   889998888877443

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.53  E-value=0.17  Score=45.34  Aligned_cols=67  Identities=16%  Similarity=0.166  Sum_probs=55.3

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCe-EEEecc-hHHHHhchh----cCCCeEEEecCCCC
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLE-CTDFDL-PHVVNGLES----DLANLKYVGGDMFE  251 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~  251 (307)
                      .++++..+.  .......||.-=|.|+++..+++.+|... .+++|. |.+++.|++    ..+|++++.++|.+
T Consensus        12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~   84 (314)
T COG0275          12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN   84 (314)
T ss_pred             HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence            355566555  45568899999999999999999999765 999999 889999987    37799999988754

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=94.43  E-value=0.013  Score=49.30  Aligned_cols=88  Identities=18%  Similarity=0.275  Sum_probs=58.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC------CCCccEEEechhhcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA------IPPADAVVLKWILHD  267 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~------~p~~D~i~~~~vLh~  267 (307)
                      ..+.++||+|.|.|..+..++..+.+  +...++ ..|..+.++       ...+....      --.+|+|.|-++|-.
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-------k~ynVl~~~ew~~t~~k~dli~clNlLDR  181 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-------KNYNVLTEIEWLQTDVKLDLILCLNLLDR  181 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-------cCCceeeehhhhhcCceeehHHHHHHHHh
Confidence            34679999999999999888776654  344455 334444442       22222221      114899999999975


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      ..++  -++|+.++.++.|.  .|++++
T Consensus       182 c~~p--~kLL~Di~~vl~ps--ngrviv  205 (288)
T KOG3987|consen  182 CFDP--FKLLEDIHLVLAPS--NGRVIV  205 (288)
T ss_pred             hcCh--HHHHHHHHHHhccC--CCcEEE
Confidence            4444  59999999999983  566654

>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]

Probab=94.34  E-value=0.062  Score=43.63  Aligned_cols=53  Identities=17%  Similarity=0.227  Sum_probs=46.9

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD  113 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~  113 (307)
                      ++++...+||+.+++   .+..+...++-|...|+++..+          .+.+.+|+.|+..+..
T Consensus        22 ~~~~~~~diA~~L~V---sp~sVt~ml~rL~~~GlV~~~~----------y~gi~LT~~G~~~a~~   74 (154)
T COG1321          22 KGFARTKDIAERLKV---SPPSVTEMLKRLERLGLVEYEP----------YGGVTLTEKGREKAKE   74 (154)
T ss_pred             cCcccHHHHHHHhCC---CcHHHHHHHHHHHHCCCeEEec----------CCCeEEChhhHHHHHH
Confidence            389999999999999   5688899999999999999987          6899999999866543

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=94.30  E-value=0.22  Score=44.74  Aligned_cols=99  Identities=16%  Similarity=0.240  Sum_probs=69.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCCC------CCCccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEA------IPPADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~------~p~~D~i~  260 (307)
                      ...++|||+=|=+|.++...+.. ...+++.+|. ..+++.+++       ..++++|++.|+++.      ...||+|+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II  200 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII  200 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence            34679999999999999987764 3457999999 677888776       247899999999872      22599998


Q ss_pred             echhhc---cCC-hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          261 LKWILH---DWN-DEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       261 ~~~vLh---~~~-~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      +-=.-.   .+. ..+-.++++.+.+.++|   ||.++.+-
T Consensus       201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~s  238 (286)
T PF10672_consen  201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCS  238 (286)
T ss_dssp             E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEc
Confidence            742211   122 12346789999999998   78876553

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=94.29  E-value=0.26  Score=41.84  Aligned_cols=100  Identities=14%  Similarity=0.205  Sum_probs=53.8

Q ss_pred             CCCeEEEecCCchHHHH---HHHHHC-CCCeEEEecc--hHHHHhchh---cCCCeEEEecCCCCC-----C------CC
Q 037127          196 GLNSLVDVGGATGTVAK---AIAKAF-PNLECTDFDL--PHVVNGLES---DLANLKYVGGDMFEA-----I------PP  255 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~---~l~~~~-p~~~~~~~Dl--~~~~~~a~~---~~~rv~~~~~d~~~~-----~------p~  255 (307)
                      ++..|+++|-=.|+.+.   .+++.+ +..+++++|+  +..-..+.+   ..+||+++.||-.++     .      +.
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~  111 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH  111 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence            47799999976665554   445555 7789999998  232222222   568999999998763     1      12


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      ..+|+.- .-|.+.  .+...|+.....+++   |+.++|-|+...
T Consensus       112 ~vlVilD-s~H~~~--hvl~eL~~y~plv~~---G~Y~IVeDt~~~  151 (206)
T PF04989_consen  112 PVLVILD-SSHTHE--HVLAELEAYAPLVSP---GSYLIVEDTIIE  151 (206)
T ss_dssp             SEEEEES-S----S--SHHHHHHHHHHT--T---T-EEEETSHHHH
T ss_pred             ceEEEEC-CCccHH--HHHHHHHHhCccCCC---CCEEEEEecccc
Confidence            3344332 334333  357889988899998   888888887653

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK11512 DNA-binding transcriptional repressor MarR; Provisional

Probab=94.28  E-value=0.048  Score=43.62  Aligned_cols=64  Identities=14%  Similarity=0.170  Sum_probs=49.8

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      +.++..|... ++.|..+||+.+++   +...+.++++.|...|++++...       .+++   .+.+|+.|+.+..
T Consensus        43 ~~vL~~l~~~-~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~-------~~DrR~~~l~LT~~G~~~~~  109 (144)
T PRK11512         43 FKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPN-------PNDKRGVLVKLTTSGAAICE  109 (144)
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccC-------cccCCeeEeEEChhHHHHHH
Confidence            3445566543 68999999999999   67999999999999999999862       1233   4788888886653

>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR

Probab=94.28  E-value=0.057  Score=45.96  Aligned_cols=69  Identities=19%  Similarity=0.251  Sum_probs=49.6

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD  113 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~  113 (307)
                      .|+..|... ++.|+.+||+.+|+   +...+++.|+.|...|++++....  ++.+.-.-.|.+|+.++.+...
T Consensus         5 ~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~--~~~gRp~~~y~LT~~G~~~~~~   73 (203)
T TIGR02702         5 DILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVV--QGMGRPQYHYQLSRQGREQFPQ   73 (203)
T ss_pred             HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeecc--cCCCCCceEEEECcchhhhccc
Confidence            355556544 68999999999999   679999999999999999987310  0001112348999998865543

All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.

>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein

Probab=94.26  E-value=0.047  Score=40.20  Aligned_cols=67  Identities=16%  Similarity=0.279  Sum_probs=48.9

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      +.++..|... ++.|..+||+.+++   +...+.+.++-|...|++++....    .+.-...|.+|+.|..+..
T Consensus        13 ~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~~~----~~~r~~~~~lT~~g~~~~~   79 (101)
T smart00347       13 FLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLPSP----EDRRSVLVSLTEEGRELIE   79 (101)
T ss_pred             HHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecCCC----CCCCeEEEEECHhHHHHHH
Confidence            3455555543 57999999999999   578899999999999999987521    0111236888888876553

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.23  E-value=0.1  Score=49.67  Aligned_cols=65  Identities=23%  Similarity=0.381  Sum_probs=51.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC--C-CC---CccEEEe
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE--A-IP---PADAVVL  261 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~--~-~p---~~D~i~~  261 (307)
                      .+..+|+|+=||.|.|+..|++.  ..+++++++ ++.++.|++     ..++++|+.++..+  + ..   .+|.|++
T Consensus       292 ~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv  368 (432)
T COG2265         292 AGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV  368 (432)
T ss_pred             cCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence            45678999999999999999966  457999999 888888876     45669999999876  2 21   3677665

>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed

Probab=94.20  E-value=0.077  Score=43.06  Aligned_cols=49  Identities=12%  Similarity=0.333  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      ++.|..+||+..++   ++..|+++|..|...||++...        |-.|.|.++....
T Consensus        23 ~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~r--------G~~GGy~La~~p~   71 (153)
T PRK11920         23 KLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVR--------GRNGGVRLGRPAA   71 (153)
T ss_pred             CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec--------CCCCCeeecCCHH
Confidence            57899999999999   6899999999999999999886        3367899886544

>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial

Probab=94.18  E-value=0.063  Score=42.15  Aligned_cols=46  Identities=17%  Similarity=0.400  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN  105 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~  105 (307)
                      ++.|+.|||+.+++   +...++++|+.|...|++....        +..+.|.+..
T Consensus        24 ~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~--------g~~ggy~l~~   69 (130)
T TIGR02944        24 QPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKR--------GVEGGYTLAR   69 (130)
T ss_pred             CCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecC--------CCCCChhhcC
Confidence            68999999999999   6899999999999999998753        1145677754

The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.05  E-value=0.3  Score=44.18  Aligned_cols=97  Identities=21%  Similarity=0.279  Sum_probs=71.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEecchHHHHhchh--------cCCCeEEEecCCCC-CCC------C----
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDLPHVVNGLES--------DLANLKYVGGDMFE-AIP------P----  255 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~-~~p------~----  255 (307)
                      ....||-+|||==.-.-.+-  .| ++++.-+|+|++++.=++        ...++++++.|+++ +.+      +    
T Consensus        92 g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          92 GIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             cccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            36789999998544333332  23 477888888999876433        34489999999995 332      1    


Q ss_pred             -ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          256 -ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       256 -~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                       .-++++-.++.+++.++..++|+++...++|   |..+ +.+.
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~-~~~~  209 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRV-AFDY  209 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceE-EEec
Confidence             4578899999999999999999999999997   5544 4444

>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B

Probab=93.99  E-value=0.032  Score=37.50  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           51 TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        51 ~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .|+.+||+.+++   +...+.++++.|...|++++..
T Consensus        22 ~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~   55 (62)
T PF12802_consen   22 LTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER   55 (62)
T ss_dssp             EEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred             cCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence            899999999999   6799999999999999999986

...

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=93.94  E-value=0.13  Score=43.99  Aligned_cols=68  Identities=18%  Similarity=0.261  Sum_probs=49.5

Q ss_pred             ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcCC
Q 037127           41 PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDS  114 (307)
Q Consensus        41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~  114 (307)
                      ...|.++ +|+|+.+||+++|+   +...+++.|+.|.+.|+++.....  .+-|.-.-.|++|..+.....++
T Consensus        17 l~lL~~~-g~~sa~elA~~Lgi---s~~avR~HL~~Le~~Glv~~~~~~--~g~GRP~~~y~Lt~~g~~~f~~~   84 (218)
T COG2345          17 LELLKKS-GPVSADELAEELGI---SPMAVRRHLDDLEAEGLVEVERQQ--GGRGRPAKLYRLTEKGREQFPKR   84 (218)
T ss_pred             HHHHhcc-CCccHHHHHHHhCC---CHHHHHHHHHHHHhCcceeeeecc--CCCCCCceeeeecccchhhcchh
Confidence            3445544 79999999999999   579999999999999999987421  00111112599999988655443

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=93.94  E-value=0.12  Score=47.95  Aligned_cols=49  Identities=18%  Similarity=0.372  Sum_probs=38.2

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCC
Q 037127          199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDM  249 (307)
Q Consensus       199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~  249 (307)
                      .|||+=||.|.++..+++..  -+++++|. +++++.|++     ..++++|+.++.
T Consensus       199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            79999999999999999985  47999999 888888876     467899987654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.93  E-value=0.39  Score=41.55  Aligned_cols=94  Identities=11%  Similarity=0.082  Sum_probs=62.4

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc--hHHHHhchhcCCCeEEEec-CCCCC----CC-Cc
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL--PHVVNGLESDLANLKYVGG-DMFEA----IP-PA  256 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~~~~rv~~~~~-d~~~~----~p-~~  256 (307)
                      ..++.+. ...+...+||||..||.|+..++++. ..+++++|.  .......+ ..+||..... |+..-    +. ..
T Consensus        69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR-~d~rV~~~E~tN~r~l~~~~~~~~~  145 (245)
T COG1189          69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR-NDPRVIVLERTNVRYLTPEDFTEKP  145 (245)
T ss_pred             HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh-cCCcEEEEecCChhhCCHHHcccCC
Confidence            3455565 23567899999999999999999874 347999998  33444445 6677766665 55431    22 35


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITS  286 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p  286 (307)
                      |++++--..-  +   ...+|-.+...+++
T Consensus       146 d~~v~DvSFI--S---L~~iLp~l~~l~~~  170 (245)
T COG1189         146 DLIVIDVSFI--S---LKLILPALLLLLKD  170 (245)
T ss_pred             CeEEEEeehh--h---HHHHHHHHHHhcCC
Confidence            6666543221  2   35778888888887

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=93.92  E-value=0.41  Score=39.90  Aligned_cols=86  Identities=21%  Similarity=0.327  Sum_probs=62.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh----c----CCCeEEEecCCCCC-----C------C-C
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES----D----LANLKYVGGDMFEA-----I------P-P  255 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~----~~rv~~~~~d~~~~-----~------p-~  255 (307)
                      +...||-+|||-=.....+...+++++++-+|+|++++.-++    .    ..++++++.|+.++     +      + .
T Consensus        78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~  157 (183)
T PF04072_consen   78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR  157 (183)
T ss_dssp             TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred             CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence            445899999999999999988888899999999998876554    1    23467899999962     1      1 2


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHH
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCK  281 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~  281 (307)
                      .-++++=.++.+++.+++..+|+.++
T Consensus       158 ptl~i~Egvl~Yl~~~~~~~ll~~ia  183 (183)
T PF04072_consen  158 PTLFIAEGVLMYLSPEQVDALLRAIA  183 (183)
T ss_dssp             EEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred             CeEEEEcchhhcCCHHHHHHHHHHhC
Confidence            56788888999999999999998763

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=93.86  E-value=0.18  Score=48.23  Aligned_cols=95  Identities=23%  Similarity=0.296  Sum_probs=67.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-----hHHHHhchhcCCC-eEEEecCCCCCC---C-CccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-----PHVVNGLESDLAN-LKYVGGDMFEAI---P-PADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-----~~~~~~a~~~~~r-v~~~~~d~~~~~---p-~~D~i~~~~v  264 (307)
                      .....|+|...|.|.|+.+|.+. |   +.++..     +..+...   .+| +-=.-+|..+++   | .||++...++
T Consensus       364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vI---ydRGLIG~yhDWCE~fsTYPRTYDLlHA~~l  436 (506)
T PF03141_consen  364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVI---YDRGLIGVYHDWCEAFSTYPRTYDLLHADGL  436 (506)
T ss_pred             cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhh---hhcccchhccchhhccCCCCcchhheehhhh
Confidence            45688999999999999999764 2   444443     2222222   222 222335777754   4 4999999999


Q ss_pred             hccCChh-HHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          265 LHDWNDE-ECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       265 Lh~~~~~-~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +..+.+. +...+|-++-|+|+|   +|.++|-|.+
T Consensus       437 fs~~~~rC~~~~illEmDRILRP---~G~~iiRD~~  469 (506)
T PF03141_consen  437 FSLYKDRCEMEDILLEMDRILRP---GGWVIIRDTV  469 (506)
T ss_pred             hhhhcccccHHHHHHHhHhhcCC---CceEEEeccH
Confidence            9887654 557899999999999   8999987753

; GO: 0008168 methyltransferase activity

>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria

Probab=93.82  E-value=0.049  Score=37.36  Aligned_cols=39  Identities=26%  Similarity=0.517  Sum_probs=32.4

Q ss_pred             CCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           47 HGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        47 ~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .|-|-|+.|||+.+|+.  ++..+.+.|+.|...|++.+.+
T Consensus        22 ~G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~   60 (65)
T PF01726_consen   22 NGYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP   60 (65)
T ss_dssp             HSS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred             cCCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence            35688999999999995  5899999999999999999885

The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.69  E-value=0.76  Score=38.87  Aligned_cols=96  Identities=13%  Similarity=0.129  Sum_probs=69.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCCCC------CccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEAIP------PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~~p------~~D~i~~~~  263 (307)
                      ++...+||-+|..+|....++..-.++-.+.+++. |.+....-.   ..+++--+-+|...|..      .+|+++.--
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV  153 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV  153 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence            67889999999999999999999888667888887 444333222   56778888899988632      478776532


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .-   | +++.-+..++..-|++   +|.++|.
T Consensus       154 AQ---p-~Qa~I~~~Na~~FLk~---~G~~~i~  179 (231)
T COG1889         154 AQ---P-NQAEILADNAEFFLKK---GGYVVIA  179 (231)
T ss_pred             CC---c-hHHHHHHHHHHHhccc---CCeEEEE
Confidence            22   2 3456778888999998   7766654

>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure

Probab=93.68  E-value=0.053  Score=39.74  Aligned_cols=63  Identities=21%  Similarity=0.307  Sum_probs=46.7

Q ss_pred             cccccccCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           40 IPDIINKHGKPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      |+..|..  |+..+.||.+.+ |+   .+..|.+-|+.|...|++++.....    ....-.|++|+.|+.+.
T Consensus        10 IL~~l~~--g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~----~p~~v~Y~LT~~G~~l~   73 (90)
T PF01638_consen   10 ILRALFQ--GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPE----VPPRVEYSLTEKGKELL   73 (90)
T ss_dssp             HHHHHTT--SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESS----SSSEEEEEE-HHHHHHH
T ss_pred             HHHHHHh--CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccC----CCCCCccCCCcCHHHHH
Confidence            3444554  799999999999 88   5789999999999999999875310    01123699999999776

The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.

>PRK11014 transcriptional repressor NsrR; Provisional

Probab=93.66  E-value=0.11  Score=41.51  Aligned_cols=60  Identities=12%  Similarity=0.320  Sum_probs=45.8

Q ss_pred             HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127           31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN  105 (307)
Q Consensus        31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~  105 (307)
                      ++++.+.++.+   +. |.+.|..+||+..|+   +...++++|..|...|+++..+        +-.|.|.++.
T Consensus        10 Al~~~i~la~~---~~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~--------G~~GG~~l~~   69 (141)
T PRK11014         10 GLRALIYMASL---PE-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVR--------GKNGGIRLGK   69 (141)
T ss_pred             HHHHHHHHhcC---CC-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEec--------CCCCCeeecC
Confidence            44555554433   22 368899999999999   6799999999999999999886        2246788764

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=93.63  E-value=0.095  Score=34.86  Aligned_cols=44  Identities=11%  Similarity=0.299  Sum_probs=38.3

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |++.|... +.+|+++||+.+++   .+.-++|=|..|...|++.+.-
T Consensus         5 Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~   48 (57)
T PF08220_consen    5 ILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH   48 (57)
T ss_pred             HHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence            45566654 79999999999999   6799999999999999999884

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element

Probab=93.55  E-value=0.12  Score=38.02  Aligned_cols=46  Identities=17%  Similarity=0.342  Sum_probs=40.4

Q ss_pred             HHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           53 LNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        53 ~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +.+||+.+++   +...+.+.++.|...|++.+.+          +..|.+|+.+..+.
T Consensus         2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~----------~~~~~lT~~g~~~~   47 (96)
T smart00529        2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP----------YRGITLTEKGRRLA   47 (96)
T ss_pred             HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC----------CCceEechhHHHHH
Confidence            5689999999   6799999999999999999986          46899999888664

iron dependent repressor

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=93.47  E-value=0.063  Score=41.75  Aligned_cols=49  Identities=18%  Similarity=0.428  Sum_probs=39.8

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL   88 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~   88 (307)
                      +..+|.+|-+.++|.|+++||+.++.   +...+.|-|+-|...|++.++..
T Consensus        29 Dv~v~~~LL~~~~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~   77 (126)
T COG3355          29 DVEVYKALLEENGPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV   77 (126)
T ss_pred             HHHHHHHHHhhcCCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence            34445444422389999999999999   68999999999999999999974

>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators

Probab=93.42  E-value=0.26  Score=33.08  Aligned_cols=34  Identities=18%  Similarity=0.290  Sum_probs=30.5

Q ss_pred             CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           51 TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        51 ~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .|..+||+.+++   +...+++.|..|...|+++..+
T Consensus        26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~   59 (66)
T cd07377          26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP   59 (66)
T ss_pred             CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence            459999999999   6799999999999999998764

This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is

>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein

Probab=93.33  E-value=0.09  Score=44.73  Aligned_cols=59  Identities=19%  Similarity=0.334  Sum_probs=46.3

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      ++.++..|..+ ++.+..+||+.+++   +...+.+.|..|...|++++...        -...|.+|+.|
T Consensus       145 ~~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~--------r~~~~~lT~~G  203 (203)
T TIGR01884       145 ELKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGR--------KGKRYSLTKLG  203 (203)
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcC--------CccEEEeCCCC
Confidence            34455556543 57999999999999   57889999999999999999851        13578888764

Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors

Probab=93.24  E-value=0.13  Score=35.41  Aligned_cols=57  Identities=21%  Similarity=0.341  Sum_probs=43.2

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      .|+..+..  ++.+..+||+.+++   +...+.+.|+.|...|++.....       .....|++++ ++
T Consensus        11 ~il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~~-------~~~~~~~~~~-g~   67 (78)
T cd00090          11 RILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRRE-------GRRVYYSLTD-AE   67 (78)
T ss_pred             HHHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEEe-------ccEEEEEeCC-ch
Confidence            34455554  34999999999999   67889999999999999998752       1235677776 54

ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.

>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance

Probab=93.23  E-value=0.035  Score=36.96  Aligned_cols=41  Identities=22%  Similarity=0.370  Sum_probs=35.3

Q ss_pred             ccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           43 IINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        43 ~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .|... ++.|..+||+.+++   +...+.++++.|...|++++..
T Consensus        11 ~l~~~-~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~   51 (59)
T PF01047_consen   11 ILYEN-GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER   51 (59)
T ss_dssp             HHHHH-SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHc-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence            34443 67999999999999   6899999999999999999986

This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=93.14  E-value=0.45  Score=42.90  Aligned_cols=74  Identities=14%  Similarity=0.159  Sum_probs=43.3

Q ss_pred             CCCeEEEecCCch-HHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEec----CCCCCC--C--CccE
Q 037127          196 GLNSLVDVGGATG-TVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGG----DMFEAI--P--PADA  258 (307)
Q Consensus       196 ~~~~vlDvGgG~G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~----d~~~~~--p--~~D~  258 (307)
                      ...++||||+|.. .|..--++.| ++++++.|+ +..++.|++       +.++|+++..    +++...  +  .+|+
T Consensus       102 ~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df  180 (299)
T PF05971_consen  102 EKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF  180 (299)
T ss_dssp             ---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred             cceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence            3578999999966 5555455555 899999999 778888876       5789998754    455532  1  3899


Q ss_pred             EEechhhccCCh
Q 037127          259 VVLKWILHDWND  270 (307)
Q Consensus       259 i~~~~vLh~~~~  270 (307)
                      .+|.=..|.=.+
T Consensus       181 tmCNPPFy~s~~  192 (299)
T PF05971_consen  181 TMCNPPFYSSQE  192 (299)
T ss_dssp             EEE-----SS--
T ss_pred             EecCCccccChh
Confidence            999888886444

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor

Probab=93.11  E-value=0.2  Score=32.94  Aligned_cols=36  Identities=14%  Similarity=0.222  Sum_probs=32.4

Q ss_pred             CCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ..+ |..+||+.+++   +...+++.|..|...|++....
T Consensus        18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~   54 (60)
T smart00345       18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP   54 (60)
T ss_pred             CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence            456 89999999999   6799999999999999998775

>COG4742 Predicted transcriptional regulator [Transcription]

Probab=93.05  E-value=0.11  Score=45.53  Aligned_cols=66  Identities=14%  Similarity=0.348  Sum_probs=56.3

Q ss_pred             HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127           31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL  110 (307)
Q Consensus        31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l  110 (307)
                      .+...-+..|+=.|.+  ||.|.+||-..+++   ++..+..-++-|...|++.++           ++.|++|+.|+.+
T Consensus         9 if~SekRk~lLllL~e--gPkti~EI~~~l~v---s~~ai~pqiKkL~~~~LV~~~-----------~~~Y~LS~~G~ii   72 (260)
T COG4742           9 LFLSEKRKDLLLLLKE--GPKTIEEIKNELNV---SSSAILPQIKKLKDKGLVVQE-----------GDRYSLSSLGKII   72 (260)
T ss_pred             HHccHHHHHHHHHHHh--CCCCHHHHHHHhCC---CcHHHHHHHHHHhhCCCEEec-----------CCEEEecchHHHH
Confidence            4445567778888876  89999999999999   567888889999999999998           4999999999977


Q ss_pred             hc
Q 037127          111 LK  112 (307)
Q Consensus       111 ~~  112 (307)
                      +.
T Consensus        73 v~   74 (260)
T COG4742          73 VE   74 (260)
T ss_pred             HH
Confidence            64

>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family

Probab=92.98  E-value=0.13  Score=39.17  Aligned_cols=53  Identities=11%  Similarity=0.373  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      ++.|..+||+.+++   +...+.++++.|...|++.+...       ..+.   .+.+|+.|+.+.
T Consensus        42 ~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~~-------~~D~R~~~i~lT~~G~~~~   97 (109)
T TIGR01889        42 GKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKERS-------EDDERKVIISINKEQRSKI   97 (109)
T ss_pred             CcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccCC-------cccCCeEEEEECHHHHHHH
Confidence            68999999999999   67999999999999999998763       2233   377888887554

This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.

>COG4190 Predicted transcriptional regulator [Transcription]

Probab=92.92  E-value=0.1  Score=40.58  Aligned_cols=55  Identities=16%  Similarity=0.300  Sum_probs=46.2

Q ss_pred             HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .+.+-+--.+-|++.|+.. +|.|..|+|+..|-   +...+.|-|+.|...|++..+.
T Consensus        58 la~vLsp~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~  112 (144)
T COG4190          58 LARVLSPRNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE  112 (144)
T ss_pred             HHHHhChhHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence            3334444467788888875 89999999999999   7899999999999999999986

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=92.89  E-value=0.2  Score=33.30  Aligned_cols=36  Identities=14%  Similarity=0.231  Sum_probs=33.0

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ++.|..+|++.+++   +...+.+.|+.|...|++....
T Consensus         9 ~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~   44 (66)
T smart00418        9 GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRR   44 (66)
T ss_pred             CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence            78999999999999   5688999999999999999765

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=92.84  E-value=0.99  Score=37.76  Aligned_cols=101  Identities=15%  Similarity=0.151  Sum_probs=68.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C---CCccEEEec
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I---PPADAVVLK  262 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~---p~~D~i~~~  262 (307)
                      ...++||+=+|+|..+.+.+.+.- .+++.+|. ..++..+++      ...++.++..|...-   .   +.||+|++-
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD  121 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD  121 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence            367999999999999999999863 47899998 666666655      358889999888741   1   139999987


Q ss_pred             hhhcc-CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          263 WILHD-WNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       263 ~vLh~-~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      =..+. .-+.+..-++-.-...|+|    +.++++|.-..
T Consensus       122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~  157 (187)
T COG0742         122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD  157 (187)
T ss_pred             CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence            77661 2221212222223456887    56677776544

>PRK06474 hypothetical protein; Provisional

Probab=92.78  E-value=0.13  Score=42.80  Aligned_cols=77  Identities=17%  Similarity=0.286  Sum_probs=54.9

Q ss_pred             HHHHHHHHhCCcccccccCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      ..+|....++.|++.|...+++.|+.+|++.+ ++   +...+.|.|+.|...|++......  +-.++.+..|++++.+
T Consensus         5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~~~--~~~~~~ek~y~~~~~~   79 (178)
T PRK06474          5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVKEK--KVRSVSEKYYAINEED   79 (178)
T ss_pred             HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecc--cccCceeEEEEeccce
Confidence            34566667788888887643459999999999 56   567899999999999999987521  0011223468888766


Q ss_pred             chh
Q 037127          108 KLL  110 (307)
Q Consensus       108 ~~l  110 (307)
                      -.+
T Consensus        80 ~~~   82 (178)
T PRK06474         80 AKI   82 (178)
T ss_pred             eee
Confidence            443

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=92.72  E-value=0.21  Score=41.63  Aligned_cols=46  Identities=13%  Similarity=0.161  Sum_probs=40.1

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ..|+++|..+ |++|.++||..+|+   ....++++|..|...|++....
T Consensus        25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~r   70 (178)
T PRK06266         25 FEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYKR   70 (178)
T ss_pred             hHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEee
Confidence            3378888775 69999999999999   6899999999999999999543

>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor

Probab=92.53  E-value=0.16  Score=32.45  Aligned_cols=42  Identities=12%  Similarity=0.308  Sum_probs=35.5

Q ss_pred             cccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           42 DIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        42 d~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +.|..+ ++.|+.+||+.+++   +...+.+.|..|...|++.+..
T Consensus         7 ~~l~~~-~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~   48 (53)
T smart00420        7 ELLAQQ-GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH   48 (53)
T ss_pred             HHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence            334433 57999999999999   6799999999999999999874

>COG4189 Predicted transcriptional regulator [Transcription]

Probab=92.52  E-value=0.15  Score=43.67  Aligned_cols=57  Identities=18%  Similarity=0.345  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           27 INSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        27 ~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      -..++|.+.++..|+..|+.. +|+.+.|||+++|+   +..-+..-+..|...|+++-+.
T Consensus        15 dv~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgL---pqst~s~~ik~Le~aGlirT~t   71 (308)
T COG4189          15 DVLKALASKVRVAILQLLHRK-GPLNVNEIAEALGL---PQSTMSANIKVLEKAGLIRTET   71 (308)
T ss_pred             hHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCC---chhhhhhhHHHHHhcCceeeee
Confidence            346788888999999999986 79999999999999   6788899999999999998764

>PRK10870 transcriptional repressor MprA; Provisional

Probab=92.49  E-value=0.27  Score=40.86  Aligned_cols=64  Identities=16%  Similarity=0.206  Sum_probs=49.0

Q ss_pred             CcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           39 SIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        39 glfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      -++..|... ++++|..+||+.+++   +...+.+++.-|...|++++...       ..++   .+.+|+.|+.+..
T Consensus        59 ~iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~-------~~DrR~~~v~LT~~G~~~~~  126 (176)
T PRK10870         59 MALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRES-------DNDRRCLHLQLTEKGHEFLR  126 (176)
T ss_pred             HHHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC-------CCCCCeeEEEECHHHHHHHH
Confidence            344455422 367999999999999   67899999999999999999863       1232   5789999987664

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=92.33  E-value=1.1  Score=42.66  Aligned_cols=103  Identities=18%  Similarity=0.270  Sum_probs=73.9

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--CccEEEechhhccC-C
Q 037127          199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PADAVVLKWILHDW-N  269 (307)
Q Consensus       199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~-~  269 (307)
                      +++-+|||.-.+...+-+.. .-.++-+|. +.+++....    ..+...+...|+.. .++  .+|+++....++.+ .
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~  129 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE  129 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence            78999999998888776642 124677788 444544433    34567888899988 455  59999999999874 3


Q ss_pred             hhH-------HHHHHHHHHHhccCCCCCcEEEEEeee--cCCCCC
Q 037127          270 DEE-------CVKILKKCKEAITSNSKIGKVIIIDMM--RENKKG  305 (307)
Q Consensus       270 ~~~-------~~~~L~~~~~~L~p~~~gg~lli~e~~--~~~~~~  305 (307)
                      +++       +...+..+++.+++   ||+.+.+...  .|-.+.
T Consensus       130 de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~~~vp~~r~  171 (482)
T KOG2352|consen  130 DEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLVQVVPQGRK  171 (482)
T ss_pred             CchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEeeeeccCCCC
Confidence            332       23467899999998   8999888874  554443

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=91.95  E-value=3.3  Score=38.76  Aligned_cols=104  Identities=19%  Similarity=0.252  Sum_probs=62.9

Q ss_pred             CCCeEEEecCCchHHHHHH--------HHH-------CCCCeEEEecchH-----HHHhchh--------------cCCC
Q 037127          196 GLNSLVDVGGATGTVAKAI--------AKA-------FPNLECTDFDLPH-----VVNGLES--------------DLAN  241 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l--------~~~-------~p~~~~~~~Dl~~-----~~~~a~~--------------~~~r  241 (307)
                      +..+|+|+|||+|..+..+        .++       -|..++..=|+|.     +......              ...+
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~  142 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR  142 (386)
T ss_pred             cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence            4668999999999665322        232       3567888888862     1111111              0112


Q ss_pred             ---eEEEecCCCC-CCC--CccEEEechhhccCCh---h---------------------------------HHHHHHHH
Q 037127          242 ---LKYVGGDMFE-AIP--PADAVVLKWILHDWND---E---------------------------------ECVKILKK  279 (307)
Q Consensus       242 ---v~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~---~---------------------------------~~~~~L~~  279 (307)
                         +.-++|.|+. -+|  ..++++.+..||-.+.   +                                 +-..+|+.
T Consensus       143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~  222 (386)
T PLN02668        143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA  222 (386)
T ss_pred             ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence               2334578877 366  3899999999883331   0                                 12234554


Q ss_pred             HHHhccCCCCCcEEEEEeeecCC
Q 037127          280 CKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       280 ~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      =++=|.|   ||++++.=.-+++
T Consensus       223 Ra~ELvp---GG~mvl~~~Gr~~  242 (386)
T PLN02668        223 RAQEMKR---GGAMFLVCLGRTS  242 (386)
T ss_pred             HHHHhcc---CcEEEEEEecCCC
Confidence            5566777   9999988766653

>PRK10742 putative methyltransferase; Provisional

Probab=91.85  E-value=0.5  Score=41.35  Aligned_cols=109  Identities=17%  Similarity=0.194  Sum_probs=71.1

Q ss_pred             HHHHHhccccccCCC--eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c----------CCCeEEEe
Q 037127          184 RVVIHKCKNVFEGLN--SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D----------LANLKYVG  246 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~--~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~----------~~rv~~~~  246 (307)
                      +.+++++.  +++..  +|||+=+|.|..+..++.+  +.+++.+|. |.+....+.    .          ..|++++.
T Consensus        76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~  151 (250)
T PRK10742         76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_pred             cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence            34556555  44444  8999999999999999998  778999999 444443332    1          15799999


Q ss_pred             cCCCC---CCC-CccEEEech----------------hhccC--ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          247 GDMFE---AIP-PADAVVLKW----------------ILHDW--NDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       247 ~d~~~---~~p-~~D~i~~~~----------------vLh~~--~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +|..+   ..+ .||+|++-=                ++|.+  .+.+...+|..+.++-+     -+|++=++...
T Consensus       152 ~da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~-----kRVVVKrp~~a  223 (250)
T PRK10742        152 ASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT-----KRVVVKRPDYA  223 (250)
T ss_pred             CcHHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC-----ceEEEecCCCC
Confidence            98766   223 489887531                23221  23334567777766654     47777665543

>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=91.78  E-value=0.22  Score=28.94  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=25.6

Q ss_pred             CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCce
Q 037127           50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFF   83 (307)
Q Consensus        50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l   83 (307)
                      |+|-+|||+.+|+   ..+-+.|+|..|...|++
T Consensus         2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI   32 (32)
T PF00325_consen    2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI   32 (32)
T ss_dssp             E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred             CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence            5788999999999   579999999999998874

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....

>TIGR00122 birA_repr_reg BirA biotin operon repressor domain

Probab=91.72  E-value=0.22  Score=34.31  Aligned_cols=45  Identities=18%  Similarity=0.217  Sum_probs=37.0

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +.++..|..  ++.+..+||+.+|+   ....+++.++.|.+.|+.....
T Consensus         3 ~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~   47 (69)
T TIGR00122         3 LRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV   47 (69)
T ss_pred             HHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence            345566764  68999999999999   6799999999999999966553

This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=91.70  E-value=0.25  Score=32.31  Aligned_cols=42  Identities=21%  Similarity=0.305  Sum_probs=32.4

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCcee
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFA   84 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~   84 (307)
                      |+..|...++++|.++||+.+++   +.+.+++-+..|...|+.-
T Consensus         5 il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~~~I   46 (55)
T PF08279_consen    5 ILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWGIPI   46 (55)
T ss_dssp             HHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT-EE
T ss_pred             HHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeE
Confidence            34445333467999999999999   6899999999999999333

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators

Probab=91.66  E-value=0.25  Score=37.76  Aligned_cols=47  Identities=21%  Similarity=0.388  Sum_probs=38.5

Q ss_pred             CcccccccCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127           39 SIPDIINKHGKPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQTL   88 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~~   88 (307)
                      -|++.|...+++.|++||.+.+     ++   +...+.|.|+.|...|++.+...
T Consensus         5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---~~~TVYR~L~~L~~~Gli~~~~~   56 (116)
T cd07153           5 AILEVLLESDGHLTAEEIYERLRKKGPSI---SLATVYRTLELLEEAGLVREIEL   56 (116)
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhCCCEEEEEe
Confidence            4566666545799999999998     34   57889999999999999998863

Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=91.63  E-value=2.9  Score=36.38  Aligned_cols=93  Identities=14%  Similarity=0.080  Sum_probs=53.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC-----CccEEEechhh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP-----PADAVVLKWIL  265 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p-----~~D~i~~~~vL  265 (307)
                      .+++||=||=.- ..+.+++-.++..+++++|+ +.+++..++    ..-.|+.+..|+.+++|     .||+++.-=  
T Consensus        44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP--  120 (243)
T PF01861_consen   44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP--  120 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred             cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--
Confidence            467899998554 44555555566679999999 666666554    33349999999999877     389877642  


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                       .|+.+-..-++.+..++|+.  +|+..+
T Consensus       121 -PyT~~G~~LFlsRgi~~Lk~--~g~~gy  146 (243)
T PF01861_consen  121 -PYTPEGLKLFLSRGIEALKG--EGCAGY  146 (243)
T ss_dssp             --SSHHHHHHHHHHHHHTB-S--TT-EEE
T ss_pred             -CCCHHHHHHHHHHHHHHhCC--CCceEE
Confidence             25667778899999999997  354443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length

Probab=91.39  E-value=0.24  Score=36.24  Aligned_cols=68  Identities=15%  Similarity=0.192  Sum_probs=47.3

Q ss_pred             HHHhCCcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHH----------HHHhCCce-eeeccCCCCCCCCCCCee
Q 037127           34 CAVELSIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMR----------ILIHSGFF-AQQTLNSSRNNNDEEQGY  101 (307)
Q Consensus        34 ~a~~lglfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~----------~L~~~g~l-~~~~~~~~~~~~~~~~~y  101 (307)
                      +=++..|+..|... ..+.++.|||..++.   ++..+..-|+          .|+.+|++ .+...       ++...|
T Consensus         8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~---~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~-------~g~k~Y   77 (90)
T PF07381_consen    8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGS---DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEK-------GGFKYY   77 (90)
T ss_pred             HHHHHHHHHHHHHcCCCcCCHHHHHHHHCC---CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeec-------CCeeEE
Confidence            33455666666554 478999999999999   5566665554          58999999 44431       223479


Q ss_pred             ecChhcchhh
Q 037127          102 VLTNASKLLL  111 (307)
Q Consensus       102 ~~t~~s~~l~  111 (307)
                      ++|+.|+.++
T Consensus        78 ~lT~~G~~~~   87 (90)
T PF07381_consen   78 RLTEKGKRIA   87 (90)
T ss_pred             EeChhhhhHH
Confidence            9999988654

The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.

>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain

Probab=91.19  E-value=0.44  Score=35.24  Aligned_cols=44  Identities=9%  Similarity=0.012  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT  104 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t  104 (307)
                      .++|..|||+.+|+   +...+.|.|..|...|++.....         .+.|..+
T Consensus        46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~~---------~~~~~~n   89 (95)
T TIGR01610        46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQGM---------MGIVGVN   89 (95)
T ss_pred             CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeecC---------CceeecC
Confidence            68999999999999   57899999999999999998742         4777776

This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.

>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family

Probab=91.17  E-value=0.36  Score=32.47  Aligned_cols=37  Identities=19%  Similarity=0.404  Sum_probs=33.6

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +++++..+||+.+|+   .+..+...+.-|...|+++.++
T Consensus        20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~   56 (60)
T PF01325_consen   20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP   56 (60)
T ss_dssp             TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred             CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence            489999999999999   5788999999999999999985

The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=91.16  E-value=0.19  Score=38.10  Aligned_cols=39  Identities=18%  Similarity=0.496  Sum_probs=30.9

Q ss_pred             ccEEEechhh---c-cCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          256 ADAVVLKWIL---H-DWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       256 ~D~i~~~~vL---h-~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ||+|+|-.|.   | +|.|+-..++++++++.|+|    |.++|+|+
T Consensus         2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEp   44 (110)
T PF06859_consen    2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEP   44 (110)
T ss_dssp             EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE-
T ss_pred             ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeC
Confidence            7999888764   4 48899999999999999999    56666665

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG3432 Predicted transcriptional regulator [Transcription]

Probab=90.60  E-value=0.13  Score=37.93  Aligned_cols=54  Identities=15%  Similarity=0.293  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +++....-|.-.+++   +-...+.+++.|+..|++.....       +....|.+|+.|+.+.
T Consensus        29 ~~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~-------~~~~~y~lT~KG~~fl   82 (95)
T COG3432          29 EGGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDN-------GRRKVYELTEKGKRFL   82 (95)
T ss_pred             CCCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccC-------CccceEEEChhHHHHH
Confidence            378888899999999   78999999999999997776651       1123799999999664

>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional

Probab=90.49  E-value=0.5  Score=40.61  Aligned_cols=67  Identities=15%  Similarity=0.226  Sum_probs=50.3

Q ss_pred             HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127           31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL  110 (307)
Q Consensus        31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l  110 (307)
                      +|+....+|   ++... ..+|..+||+.+++   +...+.|.|+.|...|++++...       .....+++|+.|+.+
T Consensus         6 ~Lk~iallg---~l~~~-~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~-------~r~~~v~LTekG~~l   71 (217)
T PRK14165          6 ALKKLALLG---AVNNT-VKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIV-------PRGQLITITEKGLDV   71 (217)
T ss_pred             HHHHHHHHh---ccCCC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEc-------CCceEEEECHHHHHH
Confidence            344444444   34432 56999999999999   67999999999999999998852       123579999988855


Q ss_pred             h
Q 037127          111 L  111 (307)
Q Consensus       111 ~  111 (307)
                      .
T Consensus        72 l   72 (217)
T PRK14165         72 L   72 (217)
T ss_pred             H
Confidence            4

>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress

Probab=90.48  E-value=0.53  Score=33.35  Aligned_cols=52  Identities=17%  Similarity=0.181  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL  110 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l  110 (307)
                      +.|+...+||+.+++   ++--++..+..|.++|+++..+-        ..+.|..|..+-.+
T Consensus        21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~--------~s~GriPT~~aYr~   72 (78)
T PF03444_consen   21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPH--------PSGGRIPTDKAYRA   72 (78)
T ss_pred             CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCC--------CCCCCCcCHHHHHH
Confidence            589999999999999   56889999999999999986431        14778888776533

Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent

>PF14394 DUF4423: Domain of unknown function (DUF4423)

Probab=90.31  E-value=0.42  Score=39.53  Aligned_cols=48  Identities=19%  Similarity=0.183  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHc--CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127           49 KPTTLNDLVSAL--TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL  109 (307)
Q Consensus        49 ~~~t~~eLA~~~--g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~  109 (307)
                      +..++.+||+++  ++   +.+.++.-|+.|..+|++++.+          +|.|..|..+-.
T Consensus        38 ~~~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~----------~g~y~~t~~~l~   87 (171)
T PF14394_consen   38 FAPDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG----------DGKYVQTDKSLT   87 (171)
T ss_pred             CCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC----------CCcEEEecceee
Confidence            344999999999  88   6899999999999999999996          589999976544

>smart00344 HTH_ASNC helix_turn_helix ASNC type

Probab=90.29  E-value=0.22  Score=37.52  Aligned_cols=46  Identities=15%  Similarity=0.218  Sum_probs=39.3

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      +..|+.+|..+ ++.|..+||+.+|+   ++..+.+.++.|...|++...
T Consensus         5 D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~   50 (108)
T smart00344        5 DRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGY   50 (108)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeece
Confidence            45567777764 68999999999999   679999999999999999954

AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=90.26  E-value=0.4  Score=33.91  Aligned_cols=42  Identities=10%  Similarity=0.129  Sum_probs=37.6

Q ss_pred             cccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           42 DIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        42 d~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |+|..+ |-.++.+||..+++   +++.++.+|+.++.+|-+++.+
T Consensus         9 d~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~   50 (78)
T PRK15431          9 DLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ   50 (78)
T ss_pred             HHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence            556665 78999999999999   6899999999999999999885

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=90.24  E-value=0.34  Score=46.35  Aligned_cols=54  Identities=24%  Similarity=0.442  Sum_probs=45.3

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCC
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDM  249 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~  249 (307)
                      ++..+.++|+=||||.++..+++..  .+++++++ |+.++.|+.     ...+.+|++|-.
T Consensus       381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa  440 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA  440 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecch
Confidence            4556889999999999999999874  57999998 888888876     567899999933

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=90.21  E-value=0.29  Score=39.89  Aligned_cols=46  Identities=15%  Similarity=0.057  Sum_probs=39.1

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ..|+++|..+ +.+|-++||+.+|+   +...++++|..|...|++....
T Consensus        17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r   62 (158)
T TIGR00373        17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR   62 (158)
T ss_pred             HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence            3467777755 68999999999999   6899999999999999996543

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional

Probab=89.46  E-value=0.28  Score=47.63  Aligned_cols=65  Identities=25%  Similarity=0.329  Sum_probs=51.5

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD  113 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~  113 (307)
                      +..++..|... ++.|..+||+.+++   +...+.++++.|.+.|+++....        ....|.+|+.|+.++..
T Consensus         8 e~~vL~~L~~~-~~~s~~eLA~~l~l---~~~tVt~~i~~Le~kGlV~~~~~--------~~~~i~LTeeG~~~~~~   72 (489)
T PRK04172          8 EKKVLKALKEL-KEATLEELAEKLGL---PPEAVMRAAEWLEEKGLVKVEER--------VEEVYVLTEEGKKYAEE   72 (489)
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEEEee--------eEEEEEECHHHHHHHHh
Confidence            34445555543 68999999999999   67999999999999999998752        13579999999966653

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=89.38  E-value=3.9  Score=36.99  Aligned_cols=97  Identities=13%  Similarity=0.186  Sum_probs=64.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecch--------HHHHhch-------------------------h------
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDLP--------HVVNGLE-------------------------S------  237 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~--------~~~~~a~-------------------------~------  237 (307)
                      ..+||-=|||.|.++-.|+...+.+++-  +.+        -++...+                         +      
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGN--EfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~  228 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGN--EFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI  228 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhccccccc--HHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence            5678999999999999999988776652  111        1111110                         0      


Q ss_pred             -------cCCCeEEEecCCCCC--CC----CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          238 -------DLANLKYVGGDMFEA--IP----PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       238 -------~~~rv~~~~~d~~~~--~p----~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                             ..+..+.-.|||.+-  .+    .+|+|+..+.+-  +.......|+.+.+.|+|   ||.++=+-+.+
T Consensus       229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPLl  299 (369)
T KOG2798|consen  229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPLL  299 (369)
T ss_pred             cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEecccee
Confidence                   122345566899872  22    389988776654  344568999999999998   88777655543

>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A

Probab=89.35  E-value=0.62  Score=32.46  Aligned_cols=51  Identities=20%  Similarity=0.255  Sum_probs=40.1

Q ss_pred             HHHHHHhCCcc-----cccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           31 SLKCAVELSIP-----DIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        31 ~L~~a~~lglf-----d~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .+..+-+.|..     ..+.   -+.|-++||+.+|+   ....+.++|+.|...|++....
T Consensus         7 Ll~l~~~~~~~~~~~~~~~~---~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~   62 (76)
T PF13545_consen    7 LLELAERFGRRQDGDGIRIP---LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR   62 (76)
T ss_dssp             HHHHHHHHEEEEETTEEEEE---EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHHCCCCCCCCceEE---ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence            34455555554     2333   58999999999999   5789999999999999999874

...

>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function

Probab=88.66  E-value=0.46  Score=34.94  Aligned_cols=46  Identities=20%  Similarity=0.245  Sum_probs=39.1

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +.|+..|... +|=.+.-||..+++   +...+...|+-|..+|++++..
T Consensus        10 ~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~   55 (92)
T PF10007_consen   10 LKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE   55 (92)
T ss_pred             HHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence            3455556554 68899999999999   6899999999999999999996

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.61  E-value=0.21  Score=40.28  Aligned_cols=41  Identities=24%  Similarity=0.339  Sum_probs=37.2

Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      .+|+|++.||+.+++-++....++.|++.|+|   ||++-|.=+
T Consensus        47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvP   87 (185)
T COG4627          47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVP   87 (185)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcC
Confidence            48999999999999999999999999999999   898887643

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=88.15  E-value=0.57  Score=36.26  Aligned_cols=50  Identities=20%  Similarity=0.310  Sum_probs=43.4

Q ss_pred             HHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           34 CAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ..+...|.+.+.++ |.+|+.+++..+|+   +-..++++++.|++.|-|...+
T Consensus        11 ~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G   60 (127)
T PF06163_consen   11 EELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG   60 (127)
T ss_pred             HHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence            34566677888876 79999999999999   6799999999999999999874

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=88.12  E-value=8.1  Score=35.89  Aligned_cols=102  Identities=18%  Similarity=0.224  Sum_probs=68.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCC--CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CCC---CccEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPN--LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIP---PADAV  259 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p---~~D~i  259 (307)
                      ...+.+|||.-.+.|.=+.++++.-++  ..++.+|. +.=+...++     ...++.....|...   ..+   .||.|
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i  233 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI  233 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence            456789999999999999999988876  55689998 433333332     34446777777643   122   28888


Q ss_pred             Eech-------------hhccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          260 VLKW-------------ILHDWNDEE-------CVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       260 ~~~~-------------vLh~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ++--             +...|..++       -.+||.++.+.+||   ||+|+-..-
T Consensus       234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTC  289 (355)
T COG0144         234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTC  289 (355)
T ss_pred             EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcc
Confidence            6532             223444442       25689999999998   777765443

>PRK13777 transcriptional regulator Hpr; Provisional

Probab=87.97  E-value=0.68  Score=38.78  Aligned_cols=64  Identities=14%  Similarity=0.192  Sum_probs=49.3

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      ..++..|... +++|..+||+.+++   +...+.++++-|...|++.+...       .++.   ...+|+.|+.+..
T Consensus        48 ~~iL~~L~~~-~~itq~eLa~~l~l---~~sTvtr~l~rLE~kGlI~R~~~-------~~DrR~~~I~LTekG~~l~~  114 (185)
T PRK13777         48 HHILWIAYHL-KGASISEIAKFGVM---HVSTAFNFSKKLEERGYLTFSKK-------EDDKRNTYIELTEKGEELLL  114 (185)
T ss_pred             HHHHHHHHhC-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCC-------CCCCCeeEEEECHHHHHHHH
Confidence            3455566554 68999999999999   56789999999999999998752       1233   4889999986653

>PHA02943 hypothetical protein; Provisional

Probab=87.85  E-value=0.69  Score=37.03  Aligned_cols=43  Identities=9%  Similarity=0.122  Sum_probs=37.3

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +++.|.  +|..|..|||+++|+   +...++-.|..|...|.+.+.+
T Consensus        16 ILE~Lk--~G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~   58 (165)
T PHA02943         16 TLRLLA--DGCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVE   58 (165)
T ss_pred             HHHHHh--cCCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEe
Confidence            455563  378999999999999   6799999999999999999986

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=87.68  E-value=1.9  Score=39.71  Aligned_cols=63  Identities=21%  Similarity=0.375  Sum_probs=41.8

Q ss_pred             CcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHH----CC----CCeEEEecchHHH
Q 037127          164 EPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA----FP----NLECTDFDLPHVV  232 (307)
Q Consensus       164 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~p----~~~~~~~Dl~~~~  232 (307)
                      .|+..+.|.+..+.+-   .+.+ ..+.  .+.+-++|++|.|+|.++..+++.    +|    .+++.+++.++-+
T Consensus        51 Apels~lFGella~~~---~~~w-q~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L  121 (370)
T COG1565          51 APELSQLFGELLAEQF---LQLW-QELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL  121 (370)
T ss_pred             chhHHHHHHHHHHHHH---HHHH-HHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence            4678888887765432   2222 2222  345678999999999999888654    44    5688999984433

>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]

Probab=87.52  E-value=1.7  Score=35.16  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHhCCc-------ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCC
Q 037127           22 HIFNFINSMSLKCAVELSI-------PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNN   94 (307)
Q Consensus        22 ~~~g~~~~~~L~~a~~lgl-------fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~   94 (307)
                      .+++-|...|+.+|.+.++       +..+...|.|+++.+|+..++..  |...+..-|+-|...|+++..+.      
T Consensus        63 ~Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e--Dth~itYslrKL~k~gLit~t~~------  134 (199)
T COG5631          63 EAFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE--DTHNITYSLRKLLKGGLITRTGS------  134 (199)
T ss_pred             HHHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc--cchhHHHHHHHHHhccceecCCC------
Confidence            4567778888888866554       23344346899999999999996  78889999999999999998762      


Q ss_pred             CCCCCeeecChhcch
Q 037127           95 NDEEQGYVLTNASKL  109 (307)
Q Consensus        95 ~~~~~~y~~t~~s~~  109 (307)
                       +-+-+|..|+.|..
T Consensus       135 -gkevTy~vTa~G~~  148 (199)
T COG5631         135 -GKEVTYEVTALGHR  148 (199)
T ss_pred             -CceEEEEEecchHH
Confidence             22357999988763

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=87.45  E-value=1.4  Score=41.59  Aligned_cols=90  Identities=16%  Similarity=0.171  Sum_probs=59.5

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CC-CC--ccEEEech
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AI-PP--ADAVVLKW  263 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~-p~--~D~i~~~~  263 (307)
                      .+...|||||.|||.++...+++..+ .++.++. .+|.+.|++      ..++|+++.---.+ .+ |.  +|+++---
T Consensus        65 ~gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~  143 (636)
T KOG1501|consen   65 IGKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED  143 (636)
T ss_pred             CceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence            45567999999999999999998755 5888898 788888877      46677775542222 11 22  66554443


Q ss_pred             hhccCChhHHHHHHHHHHHhcc
Q 037127          264 ILHDWNDEECVKILKKCKEAIT  285 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~  285 (307)
                      +.-..--+-+..-++++.+.|.
T Consensus       144 fdtEligeGalps~qhAh~~L~  165 (636)
T KOG1501|consen  144 FDTELIGEGALPSLQHAHDMLL  165 (636)
T ss_pred             hhhhhhccccchhHHHHHHHhc
Confidence            3333333334566777777764

>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities

Probab=87.35  E-value=1.3  Score=29.85  Aligned_cols=51  Identities=16%  Similarity=0.177  Sum_probs=38.6

Q ss_pred             HHHHHHHhCCcccccccCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           30 MSLKCAVELSIPDIINKHGKPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        30 ~~L~~a~~lglfd~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ..|...+..|-+.    .|..+ |..+||+.+++   +..-+++.|+.|.+.|+++..+
T Consensus         7 ~~l~~~I~~g~~~----~g~~lps~~~la~~~~v---sr~tvr~al~~L~~~g~i~~~~   58 (64)
T PF00392_consen    7 DQLRQAILSGRLP----PGDRLPSERELAERYGV---SRTTVREALRRLEAEGLIERRP   58 (64)
T ss_dssp             HHHHHHHHTTSS-----TTSBE--HHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHHcCCCC----CCCEeCCHHHHHHHhcc---CCcHHHHHHHHHHHCCcEEEEC
Confidence            3445555555553    24678 99999999999   6789999999999999999986

The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....

>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]

Probab=87.19  E-value=0.46  Score=41.95  Aligned_cols=49  Identities=29%  Similarity=0.411  Sum_probs=42.9

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL   88 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~   88 (307)
                      +..+.++|..+||-++-+||.+++|.   +..-++|.|+-|...|++++.+.
T Consensus       197 e~~il~~i~~~GGri~Q~eL~r~lgl---sktTvsR~L~~LEk~GlIe~~K~  245 (258)
T COG2512         197 EKEILDLIRERGGRITQAELRRALGL---SKTTVSRILRRLEKRGLIEKEKK  245 (258)
T ss_pred             HHHHHHHHHHhCCEEeHHHHHHhhCC---ChHHHHHHHHHHHhCCceEEEEe
Confidence            44566677777888999999999999   57899999999999999999985

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=87.15  E-value=1.9  Score=37.82  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=25.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCC--------CeEEEecchH
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPN--------LECTDFDLPH  230 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~Dl~~  230 (307)
                      +-+|+++|+|+|.++..+++....        ++++.++.++
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp   60 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISP   60 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCH
Confidence            468999999999999998875443        4899999843

; PDB: 4F3N_A 1ZKD_B.

>COG1497 Predicted transcriptional regulator [Transcription]

Probab=86.90  E-value=0.47  Score=40.96  Aligned_cols=63  Identities=13%  Similarity=0.228  Sum_probs=49.4

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcCCCCChHHHHHH
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQA  124 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~  124 (307)
                      ..+...|||+.+|+   ..-++...++-|+..|++++..          .++|..|..|.....+.-..++.+...
T Consensus        24 p~v~q~eIA~~lgi---T~QaVsehiK~Lv~eG~i~~~g----------R~~Y~iTkkG~e~l~~~~~dlr~f~~e   86 (260)
T COG1497          24 PRVKQKEIAKKLGI---TLQAVSEHIKELVKEGLIEKEG----------RGEYEITKKGAEWLLEQLSDLRRFSEE   86 (260)
T ss_pred             CCCCHHHHHHHcCC---CHHHHHHHHHHHHhccceeecC----------CeeEEEehhHHHHHHHHHHHHHHHHHH
Confidence            57899999999999   5689999999999999999975          579999999984443322234444443

>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=86.22  E-value=0.66  Score=33.66  Aligned_cols=53  Identities=17%  Similarity=0.227  Sum_probs=33.6

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      +..++..|-+.+|+   +.+-++..+.+|...|+-......+.|++   .|.|+++.=|
T Consensus        20 ~~~nvp~L~~~TGm---PrRT~Qd~i~aL~~~~I~~~Fvq~G~R~~---~GyY~i~~WG   72 (90)
T PF09904_consen   20 GERNVPALMEATGM---PRRTIQDTIKALPELGIECEFVQDGERNN---AGYYRISDWG   72 (90)
T ss_dssp             S-B-HHHHHHHH------HHHHHHHHHGGGGGT-EEEEE--TTS-S-----EEEEEE-T
T ss_pred             CCccHHHHHHHhCC---CHhHHHHHHHHhhcCCeEEEEEecCccCC---CCcEEeeecC
Confidence            44599999999999   68999999999999999887443334444   6789887543

; PDB: 3KE2_B.

>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4

Probab=85.98  E-value=0.49  Score=33.37  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=23.1

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHH
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILI   78 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~   78 (307)
                      ++..|.. |.|+|+++||.++|+   +.+.+...|..+-
T Consensus        29 LLr~LA~-G~PVt~~~LA~a~g~---~~e~v~~~L~~~p   63 (77)
T PF12324_consen   29 LLRLLAK-GQPVTVEQLAAALGW---PVEEVRAALAAMP   63 (77)
T ss_dssp             HHHHHTT-TS-B-HHHHHHHHT-----HHHHHHHHHH-T
T ss_pred             HHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHhCC
Confidence            6677876 699999999999999   5566666665543

99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=85.96  E-value=5.4  Score=38.68  Aligned_cols=123  Identities=15%  Similarity=0.272  Sum_probs=77.4

Q ss_pred             CccccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccc-cCCCeEEEecCCchHHHHHHHHH----CCCCeEEEecc-h
Q 037127          156 SFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVF-EGLNSLVDVGGATGTVAKAIAKA----FPNLECTDFDL-P  229 (307)
Q Consensus       156 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-~  229 (307)
                      ..|+.+++++-....|+++..       ..+++..+... +....|.=+|+|.|=+....++.    .-.++.++++- |
T Consensus       333 ~TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP  405 (649)
T KOG0822|consen  333 QTYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP  405 (649)
T ss_pred             hhhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence            346666777766666655432       33444443211 22567788999999777655433    23467788887 6


Q ss_pred             HHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEechhhccCChhH-HHHHHHHHHHhccC
Q 037127          230 HVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEE-CVKILKKCKEAITS  286 (307)
Q Consensus       230 ~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~-~~~~L~~~~~~L~p  286 (307)
                      ..+-..+.     ...||+++..||.+ .-|  .+|++ .+..|--|.|.| ...-|..+-+.|||
T Consensus       406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~-VSELLGSFGDNELSPECLDG~q~fLkp  470 (649)
T KOG0822|consen  406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADII-VSELLGSFGDNELSPECLDGAQKFLKP  470 (649)
T ss_pred             chhhhhhhhchhhhcCeeEEEeccccccCCchhhccch-HHHhhccccCccCCHHHHHHHHhhcCC
Confidence            65544443     57899999999998 333  47854 455555555432 23447777778998

>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed

Probab=85.74  E-value=1.1  Score=42.40  Aligned_cols=45  Identities=16%  Similarity=0.237  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN  105 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~  105 (307)
                      |.|.|.++|++++++   +++.++++|+.|...|++.+.+          ++.|.+..
T Consensus       308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~----------~g~~~l~r  352 (412)
T PRK04214        308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE----------RGQWVLAR  352 (412)
T ss_pred             CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC----------CCceEecC
Confidence            479999999999999   6899999999999999999654          45676663

>COG1378 Predicted transcriptional regulators [Transcription]

Probab=85.57  E-value=0.98  Score=39.68  Aligned_cols=49  Identities=16%  Similarity=0.240  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      |+.|+.|||+.+|+   +...+..+|+.|...|+++..+        +....|+.-+-..
T Consensus        29 g~~tA~eis~~sgv---P~~kvY~vl~sLe~kG~v~~~~--------g~P~~y~av~p~~   77 (247)
T COG1378          29 GEATAKEISEASGV---PRPKVYDVLRSLEKKGLVEVIE--------GRPKKYRAVPPEE   77 (247)
T ss_pred             CCccHHHHHHHcCC---CchhHHHHHHHHHHCCCEEeeC--------CCCceEEeCCHHH
Confidence            79999999999999   6899999999999999999985        2356787765544

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=85.55  E-value=6.6  Score=38.32  Aligned_cols=97  Identities=14%  Similarity=0.155  Sum_probs=63.3

Q ss_pred             cCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCC-eEEEec---------------CCC------
Q 037127          195 EGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLAN-LKYVGG---------------DMF------  250 (307)
Q Consensus       195 ~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~r-v~~~~~---------------d~~------  250 (307)
                      ..+.+|+=+|+| .|..+...++.... +++++|. ++..+.+++.... +.+-..               ++.      
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            347899999999 67788888888854 8999999 7788888763333 212110               110      


Q ss_pred             -CC-CCCccEEEechhhccCChhHHHHH-HHHHHHhccCCCCCcEEEEEee
Q 037127          251 -EA-IPPADAVVLKWILHDWNDEECVKI-LKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       251 -~~-~p~~D~i~~~~vLh~~~~~~~~~~-L~~~~~~L~p~~~gg~lli~e~  298 (307)
                       .+ ..++|+++-.--...-+.   ..+ .+...+.++|   ||+++.+-.
T Consensus       242 ~~~~~~gaDVVIetag~pg~~a---P~lit~~~v~~mkp---GgvIVdvg~  286 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGKPA---PKLITAEMVASMKP---GSVIVDLAA  286 (509)
T ss_pred             HHhccCCCCEEEECCCCCcccC---cchHHHHHHHhcCC---CCEEEEEcc
Confidence             01 135888876654422222   244 5999999998   898887754

>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain

Probab=85.47  E-value=0.73  Score=44.28  Aligned_cols=70  Identities=14%  Similarity=0.225  Sum_probs=54.9

Q ss_pred             HHhCCcccccccCCCC-CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc-
Q 037127           35 AVELSIPDIINKHGKP-TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK-  112 (307)
Q Consensus        35 a~~lglfd~L~~~~~~-~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~-  112 (307)
                      +.+..|+..|... ++ .+.++||+.+|+   +...+.+.+..|.+.|+++.....        ...|.+|+.|+..+. 
T Consensus         3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kg~v~~~~~~--------~~~~~LT~eG~~~l~~   70 (492)
T PLN02853          3 MAEEALLGALSNN-EEISDSGQFAASHGL---DHNEVVGVIKSLHGFRYVDAQDIK--------RETWVLTEEGKKYAAE   70 (492)
T ss_pred             hHHHHHHHHHHhc-CCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE--------EEEEEECHHHHHHHHc
Confidence            3455666777653 44 799999999999   679999999999999999888642        468999999995554 


Q ss_pred             CCCC
Q 037127          113 DSPL  116 (307)
Q Consensus       113 ~~~~  116 (307)
                      .+|.
T Consensus        71 G~PE   74 (492)
T PLN02853         71 GSPE   74 (492)
T ss_pred             CCHH
Confidence            4543

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.44  E-value=8.5  Score=34.82  Aligned_cols=106  Identities=14%  Similarity=0.284  Sum_probs=76.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC--CCCeEEEecchHHHHh-ch---h-----------------------cCCCeEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF--PNLECTDFDLPHVVNG-LE---S-----------------------DLANLKY  244 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl~~~~~~-a~---~-----------------------~~~rv~~  244 (307)
                      ..+...||-+|||.=.....|...+  +.+.++-+|.|++++. ..   +                       ...|...
T Consensus        85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~  164 (335)
T KOG2918|consen   85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL  164 (335)
T ss_pred             cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence            4567889999999999999999888  7788888888877653 21   0                       1234555


Q ss_pred             EecCCCC--CC----------CC-ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          245 VGGDMFE--AI----------PP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       245 ~~~d~~~--~~----------p~-~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      ...|+.+  ++          +. +-+++.==+|-+++++++..+|+-+....+.    +.+++.|.+.+.+
T Consensus       165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D  232 (335)
T KOG2918|consen  165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPND  232 (335)
T ss_pred             eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCC
Confidence            5666653  10          01 2333444467788999999999999999885    8999999998654

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=85.20  E-value=2.5  Score=39.59  Aligned_cols=62  Identities=13%  Similarity=0.082  Sum_probs=53.0

Q ss_pred             cCCCeEEEecCCCC---CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          238 DLANLKYVGGDMFE---AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       238 ~~~rv~~~~~d~~~---~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ..+||+++.+++.+   ..|  .+|.++++.+.-.+++++...+++++.++++|   ||+|+.-....+.
T Consensus       273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~  339 (380)
T PF11899_consen  273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP  339 (380)
T ss_pred             CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence            45999999999877   343  59999999999888999999999999999999   9999987665543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=85.08  E-value=3  Score=33.17  Aligned_cols=78  Identities=18%  Similarity=0.226  Sum_probs=49.8

Q ss_pred             eEEEecc-hHHHHhchh------cCCCeEEEecCCCC---CCC--CccEEEechh-h----cc-CC-hhHHHHHHHHHHH
Q 037127          222 ECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AIP--PADAVVLKWI-L----HD-WN-DEECVKILKKCKE  282 (307)
Q Consensus       222 ~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~p--~~D~i~~~~v-L----h~-~~-~~~~~~~L~~~~~  282 (307)
                      +++++|+ +..++..++      ..+||+++..+-.+   -.+  ..|+++++-- |    |. .+ .+....-|+++.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~   80 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE   80 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence            5789999 788887776      45689999876554   234  3788777642 1    11 11 2345678888889


Q ss_pred             hccCCCCCcEEEEEeeecCC
Q 037127          283 AITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       283 ~L~p~~~gg~lli~e~~~~~  302 (307)
                      .|+|   ||.+.|+-+.-.+
T Consensus        81 lL~~---gG~i~iv~Y~GH~   97 (140)
T PF06962_consen   81 LLKP---GGIITIVVYPGHP   97 (140)
T ss_dssp             HEEE---EEEEEEEE--STC
T ss_pred             hhcc---CCEEEEEEeCCCC
Confidence            9998   8999988765444

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=85.06  E-value=4  Score=37.53  Aligned_cols=94  Identities=19%  Similarity=0.152  Sum_probs=62.2

Q ss_pred             ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEe--cCCCCCCCC-ccEEEechhhccC
Q 037127          194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVG--GDMFEAIPP-ADAVVLKWILHDW  268 (307)
Q Consensus       194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~--~d~~~~~p~-~D~i~~~~vLh~~  268 (307)
                      ..+..+|+=+|.| -|.++.++++..- .+++++|. ++-.+.|+++....-.-.  .|..+...+ +|+++-.-. .  
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~--  239 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P--  239 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence            4567778777766 6788889999775 89999999 666777776322222211  233333332 787766544 2  


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                            ..+....++|++   +|+++++-...
T Consensus       240 ------~~~~~~l~~l~~---~G~~v~vG~~~  262 (339)
T COG1064         240 ------ATLEPSLKALRR---GGTLVLVGLPG  262 (339)
T ss_pred             ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence                  335666777888   89999987663

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=85.06  E-value=5.8  Score=37.01  Aligned_cols=100  Identities=20%  Similarity=0.199  Sum_probs=62.0

Q ss_pred             ccCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEecc-hHHHHhchhc-CCC-eEEEecC-CCC---CC-C--CccEEEec
Q 037127          194 FEGLNSLVDVGGAT-GTVAKAIAKAFPNLECTDFDL-PHVVNGLESD-LAN-LKYVGGD-MFE---AI-P--PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~~r-v~~~~~d-~~~---~~-p--~~D~i~~~  262 (307)
                      .....+||.+|||. |..+..+++.....++++++. ++..+.+++. ... +.+...+ +.+   .. +  .+|+++-.
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~  261 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA  261 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence            44567899999997 899999999986546888887 6666666642 111 1221221 111   11 1  36766543


Q ss_pred             h---------------hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          263 W---------------ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       263 ~---------------vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      -               +|+..++.  ...++.+.+.+++   +|+++++..
T Consensus       262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~  307 (386)
T cd08283         262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV  307 (386)
T ss_pred             CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence            1               22222333  3568888999998   899998853

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species

Probab=84.72  E-value=1.9  Score=34.29  Aligned_cols=46  Identities=15%  Similarity=0.265  Sum_probs=39.0

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT  104 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t  104 (307)
                      |+.|.+|||-+.|+   ..+.+-..|.++++-|-|.+...       ++.=+|+++
T Consensus         5 Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~q-------~gkfRy~iP   50 (155)
T PF07789_consen    5 GAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVNQ-------NGKFRYCIP   50 (155)
T ss_pred             CcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEecC-------CCceEEeCC
Confidence            89999999999999   68999999999999999999853       122357776

The region in question is approximately 150 amino acid residues long.

>TIGR00498 lexA SOS regulatory protein LexA

Probab=84.65  E-value=1.1  Score=37.93  Aligned_cols=38  Identities=13%  Similarity=0.411  Sum_probs=33.4

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +-+.|+.|||+.+|++  ....+.+.|+.|...|++++..
T Consensus        23 ~~~~~~~ela~~~~~~--s~~tv~~~l~~L~~~g~i~~~~   60 (199)
T TIGR00498        23 GYPPSIREIARAVGLR--SPSAAEEHLKALERKGYIERDP   60 (199)
T ss_pred             CCCCcHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEecCC
Confidence            4578999999999993  1688999999999999999984

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>TIGR02147 Fsuc_second hypothetical protein, TIGR02147

Probab=84.56  E-value=1.3  Score=39.40  Aligned_cols=49  Identities=12%  Similarity=0.088  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      +..++++||++++- +.+...++.-|+.|..+|++++.+          +|.|..|..+-
T Consensus       136 ~~~~~~~ia~~l~p-~is~~ev~~sL~~L~~~glikk~~----------~g~y~~t~~~l  184 (271)
T TIGR02147       136 FADDPEELAKRCFP-KISAEQVKESLDLLERLGLIKKNE----------DGFYKQTDKAV  184 (271)
T ss_pred             CCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHCCCeeECC----------CCcEEeeccee
Confidence            45589999999992 115788999999999999999986          68999997643

This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=84.56  E-value=4.1  Score=38.11  Aligned_cols=110  Identities=19%  Similarity=0.254  Sum_probs=66.0

Q ss_pred             HHHHHhccccccCCCeEEEecCCchH----HHHHHHHHC---CCCeEEEecchH-----HHHhchh--------cCCCeE
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGT----VAKAIAKAF---PNLECTDFDLPH-----VVNGLES--------DLANLK  243 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~----~~~~l~~~~---p~~~~~~~Dl~~-----~~~~a~~--------~~~rv~  243 (307)
                      +.|++.+.  -.+..+|+|+|.|.|.    +...|+++.   |.+++|+++.|.     .++.+.+        ..=..+
T Consensus       100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe  177 (374)
T PF03514_consen  100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE  177 (374)
T ss_pred             HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence            55667666  4567899999999984    445566553   678999999832     2222222        223355


Q ss_pred             EEec--CCCCCC--------C-CccEEEechhhccCChh------HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          244 YVGG--DMFEAI--------P-PADAVVLKWILHDWNDE------ECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       244 ~~~~--d~~~~~--------p-~~D~i~~~~vLh~~~~~------~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      |...  +-.++.        + ++=+|-+..-||+..++      ....+|+.++ .|+|    -.++++|.-.
T Consensus       178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea  246 (374)
T PF03514_consen  178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEA  246 (374)
T ss_pred             EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecC
Confidence            5552  222211        1 35556677788887632      2345776554 7788    5777777653

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK11169 leucine-responsive transcriptional regulator; Provisional

Probab=84.51  E-value=0.94  Score=37.07  Aligned_cols=49  Identities=14%  Similarity=0.167  Sum_probs=42.4

Q ss_pred             HHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           34 CAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      ...+..|+.+|..+ +..|..+||+++|+   ++..+.+=++-|...|++..-
T Consensus        13 D~~D~~IL~~Lq~d-~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~~   61 (164)
T PRK11169         13 DRIDRNILNELQKD-GRISNVELSKRVGL---SPTPCLERVRRLERQGFIQGY   61 (164)
T ss_pred             HHHHHHHHHHhccC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence            34577888899875 89999999999999   578899999999999999854

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=84.39  E-value=6.4  Score=32.30  Aligned_cols=91  Identities=16%  Similarity=0.223  Sum_probs=57.1

Q ss_pred             ecCCchHHHHHHHHHCC---CCeEEEecc-hHHHHhchh--------cCCCeEE-EecCCCC---CC--C--CccEEEec
Q 037127          203 VGGATGTVAKAIAKAFP---NLECTDFDL-PHVVNGLES--------DLANLKY-VGGDMFE---AI--P--PADAVVLK  262 (307)
Q Consensus       203 vGgG~G~~~~~l~~~~p---~~~~~~~Dl-~~~~~~a~~--------~~~rv~~-~~~d~~~---~~--p--~~D~i~~~  262 (307)
                      ||=|.-.|+..|++.++   ++.++.+|- ..+.+.-..        ....++. +..|..+   ..  .  .||.|++.
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            68888899999999988   445677776 333333321        1222333 3336554   12  1  49999988


Q ss_pred             hhhccCC-----------hhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          263 WILHDWN-----------DEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       263 ~vLh~~~-----------~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +.-.-..           .+-...+++.+.+.|++   +|.|.|.
T Consensus        83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVT  124 (166)
T PF10354_consen   83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVT  124 (166)
T ss_pred             CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence            7654311           12235678889999998   8888875

>COG3413 Predicted DNA binding protein [General function prediction only]

Probab=84.22  E-value=2.2  Score=36.58  Aligned_cols=44  Identities=20%  Similarity=0.198  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHH
Q 037127           26 FINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRI   76 (307)
Q Consensus        26 ~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~   76 (307)
                      ..+..+|+.|.++|-||. +   ..++..|||+.+|++   ...+...||-
T Consensus       158 drQ~~vL~~A~~~GYFd~-P---R~~~l~dLA~~lGIS---kst~~ehLRr  201 (215)
T COG3413         158 DRQLEVLRLAYKMGYFDY-P---RRVSLKDLAKELGIS---KSTLSEHLRR  201 (215)
T ss_pred             HHHHHHHHHHHHcCCCCC-C---ccCCHHHHHHHhCCC---HHHHHHHHHH
Confidence            346779999999999997 4   579999999999995   4555555554

>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional

Probab=83.96  E-value=0.92  Score=36.66  Aligned_cols=47  Identities=9%  Similarity=0.197  Sum_probs=40.9

Q ss_pred             HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      .+..|+++|..+ +..|..+||+.+|+   ++..+.+=++-|...|++...
T Consensus        10 ~D~~Il~~Lq~d-~R~s~~eiA~~lgl---S~~tV~~Ri~rL~~~GvI~~~   56 (153)
T PRK11179         10 LDRGILEALMEN-ARTPYAELAKQFGV---SPGTIHVRVEKMKQAGIITGT   56 (153)
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence            466778888875 79999999999999   578899999999999999854

>COG1846 MarR Transcriptional regulators [Transcription]

Probab=83.96  E-value=1.1  Score=33.87  Aligned_cols=70  Identities=17%  Similarity=0.201  Sum_probs=49.6

Q ss_pred             HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127           36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD  113 (307)
Q Consensus        36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~  113 (307)
                      .++.++..|... ++.+..+||+.+++   +...+.++++.|...|++.+.....    +.=.-.+.+|+.|+.+...
T Consensus        23 ~q~~~L~~l~~~-~~~~~~~la~~l~i---~~~~vt~~l~~Le~~glv~r~~~~~----DrR~~~l~lT~~G~~~~~~   92 (126)
T COG1846          23 PQYQVLLALYEA-GGITVKELAERLGL---DRSTVTRLLKRLEDKGLIERLRDPE----DRRAVLVRLTEKGRELLEQ   92 (126)
T ss_pred             HHHHHHHHHHHh-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCcc----ccceeeEEECccHHHHHHH
Confidence            345555555653 34444999999999   6799999999999999999987311    0001258999999866543

>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional

Probab=83.92  E-value=1  Score=43.39  Aligned_cols=69  Identities=17%  Similarity=0.227  Sum_probs=53.3

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh-cCCC
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL-KDSP  115 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~-~~~~  115 (307)
                      +..|+..|...++..+..+||+.+|+   +...+.+.+..|.+.|+++.....        ...|.+|+.|+..+ ..+|
T Consensus         8 e~~iL~~l~~~~~~~~~~~la~~~~~---~~~~v~~~~~~L~~kg~v~~~~~~--------~~~~~LT~eG~~~~~~G~P   76 (494)
T PTZ00326          8 ENTILSKLESENEIVNSLALAESLNI---DHQKVVGAIKSLESANYITTEMKK--------SNTWTLTEEGEDYLKNGSP   76 (494)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE--------EEEEEECHHHHHHHHcCCH
Confidence            34455556542257999999999999   679999999999999999988642        46899999999555 4454


Q ss_pred             C
Q 037127          116 L  116 (307)
Q Consensus       116 ~  116 (307)
                      .
T Consensus        77 E   77 (494)
T PTZ00326         77 E   77 (494)
T ss_pred             H
Confidence            3

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=83.67  E-value=5.9  Score=36.60  Aligned_cols=94  Identities=21%  Similarity=0.175  Sum_probs=66.5

Q ss_pred             CeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-CCCeEEEecC-CC----C-CCC-CccEEEechhhc
Q 037127          198 NSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-LANLKYVGGD-MF----E-AIP-PADAVVLKWILH  266 (307)
Q Consensus       198 ~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-~~rv~~~~~d-~~----~-~~p-~~D~i~~~~vLh  266 (307)
                      .+|+=+||| .|.++..+++.+...++++.|. +.-++.|++ . .+.+.....+ .-    + .-+ ++|+++=..-  
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G--  247 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG--  247 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence            389999999 6788889999999899999999 777888876 3 3333333332 11    1 112 4888765544  


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                            ....++.+.+++++   +|++.++-....+
T Consensus       248 ------~~~~~~~ai~~~r~---gG~v~~vGv~~~~  274 (350)
T COG1063         248 ------SPPALDQALEALRP---GGTVVVVGVYGGE  274 (350)
T ss_pred             ------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence                  13468888899998   9999998776554

>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Probab=83.47  E-value=1.2  Score=37.95  Aligned_cols=37  Identities=22%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +.+.|.+|+|+++|+   ..-..+|.|..|++.|+++.+-
T Consensus       171 ~~~~Taeela~~~gi---SRvTaRRYLeyl~~~~~l~a~i  207 (224)
T COG4565         171 DQELTAEELAQALGI---SRVTARRYLEYLVSNGILEAEI  207 (224)
T ss_pred             CCccCHHHHHHHhCc---cHHHHHHHHHHHHhcCeeeEEe
Confidence            379999999999999   5678899999999999999774

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=83.39  E-value=4.7  Score=36.17  Aligned_cols=101  Identities=16%  Similarity=0.205  Sum_probs=67.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC----CC-CccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA----IP-PADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~----~p-~~D~i~~  261 (307)
                      .....+|||+-++.|.=+..+++..+ ..+++..|+ +.-+...++     ....+.....|..+.    .+ .||.|++
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence            34567899999999999999999887 568999998 544444433     456777777776652    22 3888876


Q ss_pred             ch------hhc-------cCChhH-------HHHHHHHHHHhc----cCCCCCcEEEEEe
Q 037127          262 KW------ILH-------DWNDEE-------CVKILKKCKEAI----TSNSKIGKVIIID  297 (307)
Q Consensus       262 ~~------vLh-------~~~~~~-------~~~~L~~~~~~L----~p~~~gg~lli~e  297 (307)
                      --      ++.       .+..++       -.++|+++.+.+    +|   ||+++-..
T Consensus       163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsT  219 (283)
T PF01189_consen  163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYST  219 (283)
T ss_dssp             ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEE
T ss_pred             CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEe
Confidence            22      221       112111       256899999999    98   77766443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=83.13  E-value=1.7  Score=38.50  Aligned_cols=195  Identities=15%  Similarity=0.166  Sum_probs=105.2

Q ss_pred             CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcCCCCChHHHHHHhcC----
Q 037127           52 TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLD----  127 (307)
Q Consensus        52 t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~----  127 (307)
                      ++-.|+.....   +.+.+..+++.|...|++..+.           |...+|..|+.++..-  .+...-...+.    
T Consensus        36 d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~~-----------g~v~~TekG~E~~e~~--gi~~~~~~~C~~CeG   99 (354)
T COG1568          36 DFWKIVDYSDL---PLPLVASILEILEDEGIVKIEE-----------GGVELTEKGEELAEEL--GIKKKYDYTCECCEG   99 (354)
T ss_pred             chHhhhhhccC---CchHHHHHHHHHHhcCcEEEec-----------CcEeehhhhHHHHHHh--CCCccccccccCcCC
Confidence            88999999988   6789999999999999999984           6699999999777532  11111111110    


Q ss_pred             -cchhhhhhhHHHhhhc---CCCChhhhhcCCCccccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEe
Q 037127          128 -PILLSPWLKLSTWFQS---DDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDV  203 (307)
Q Consensus       128 -~~~~~~~~~l~~~l~~---~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDv  203 (307)
                       ......+..|-+-++.   ..|-+-+. +.+.+     -.|+         ...++.   .++  +.-+.-.++.|+=+
T Consensus       100 rgi~l~~f~dll~kf~eiaK~RP~p~~~-yDQgf-----vTpE---------ttv~Rv---~lm--~~RGDL~gK~I~vv  159 (354)
T COG1568         100 RGISLQAFKDLLEKFREIAKDRPEPLHQ-YDQGF-----VTPE---------TTVSRV---ALM--YSRGDLEGKEIFVV  159 (354)
T ss_pred             ccccchhHHHHHHHHHHHHhcCCCcchh-ccccc-----cccc---------ceeeee---eee--ccccCcCCCeEEEE
Confidence             0001112222221111   11111000 00000     0000         000000   011  01011235678888


Q ss_pred             cCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-----CccEEEechhhccCChhH
Q 037127          204 GGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-----PADAVVLKWILHDWNDEE  272 (307)
Q Consensus       204 GgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-----~~D~i~~~~vLh~~~~~~  272 (307)
                      | ---.++.+++-..---++.++|+ ...+....+     ..++++....|..+|+|     .||+++--=+   .+-+.
T Consensus       160 G-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp---eTi~a  235 (354)
T COG1568         160 G-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP---ETIKA  235 (354)
T ss_pred             c-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch---hhHHH
Confidence            8 44455555544332348899999 445554433     56779999999999998     3897754211   01123


Q ss_pred             HHHHHHHHHHhccC
Q 037127          273 CVKILKKCKEAITS  286 (307)
Q Consensus       273 ~~~~L~~~~~~L~p  286 (307)
                      ...+|.+=..+|+.
T Consensus       236 lk~FlgRGI~tLkg  249 (354)
T COG1568         236 LKLFLGRGIATLKG  249 (354)
T ss_pred             HHHHHhccHHHhcC
Confidence            45567777788875

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=82.91  E-value=6.3  Score=35.11  Aligned_cols=98  Identities=13%  Similarity=0.226  Sum_probs=61.6

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCe-EEEecc-hHHHHhchhcCCCeEEEecCCCC----C-CCCccEEEechhhccCCh-
Q 037127          199 SLVDVGGATGTVAKAIAKAFPNLE-CTDFDL-PHVVNGLESDLANLKYVGGDMFE----A-IPPADAVVLKWILHDWND-  270 (307)
Q Consensus       199 ~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~----~-~p~~D~i~~~~vLh~~~~-  270 (307)
                      +++|+=||.|.+...+.+..  .+ +..+|. +..++..+..-+.. .+.+|+.+    . .+.+|+++.+-..-.|+. 
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a   78 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA   78 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence            68999999999999998873  44 677898 56565555421111 56677766    1 346899988775543321 


Q ss_pred             -------hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          271 -------EECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       271 -------~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                             +....++..+.+.++..  .-+++++|.+..
T Consensus        79 g~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g  114 (275)
T cd00315          79 GKRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKG  114 (275)
T ss_pred             hhcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcc
Confidence                   11233555555555321  237999998864

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication

Probab=82.86  E-value=1.8  Score=35.55  Aligned_cols=72  Identities=15%  Similarity=0.160  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCC
Q 037127           16 QAHVWNHIFNFINSMSLKCAV-ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNN   94 (307)
Q Consensus        16 ~~~l~~~~~g~~~~~~L~~a~-~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~   94 (307)
                      ...+++++ |-..+.+|...+ .++ .+-.-    -.|..+||+.+|+   +...+.|.+..|...+|+.+..       
T Consensus        46 i~~~l~l~-g~k~~~Vl~~il~~~d-~~N~v----~~t~~~ia~~l~i---S~~Tv~r~ik~L~e~~iI~k~~-------  109 (165)
T PF05732_consen   46 IIKVLDLI-GNKAFRVLMYILENMD-KDNAV----VATQKEIAEKLGI---SKPTVSRAIKELEEKNIIKKIR-------  109 (165)
T ss_pred             HHHHhhhh-chhHHHHHHHHHHhcC-CCCeE----EeeHHHHHHHhCC---CHHHHHHHHHHHHhCCcEEEcc-------
Confidence            33444443 223445555554 344 43222    3588999999999   5788999999999999999885       


Q ss_pred             CCCCCeeecChh
Q 037127           95 NDEEQGYVLTNA  106 (307)
Q Consensus        95 ~~~~~~y~~t~~  106 (307)
                         .|.|.++|.
T Consensus       110 ---~G~Y~iNP~  118 (165)
T PF05732_consen  110 ---NGAYMINPN  118 (165)
T ss_pred             ---CCeEEECcH
Confidence               589999986

; GO: 0006260 DNA replication, 0006276 plasmid maintenance

>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors

Probab=82.32  E-value=0.66  Score=34.88  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=32.8

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |++.|..+ +.++-++||+.+|+   +..-++++|..|...|++....
T Consensus        18 Il~~L~~~-~~l~de~la~~~~l---~~~~vRkiL~~L~~~~lv~~~~   61 (105)
T PF02002_consen   18 ILDALLRK-GELTDEDLAKKLGL---KPKEVRKILYKLYEDGLVSYRR   61 (105)
T ss_dssp             HHHHHHHH---B-HHHHHHTT-S----HHHHHHHHHHHHHHSS-EEEE
T ss_pred             HHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEEEE
Confidence            56667654 68999999999999   6899999999999999997664

Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.

>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term

Probab=82.22  E-value=2.1  Score=32.95  Aligned_cols=36  Identities=22%  Similarity=0.323  Sum_probs=34.0

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .++|++|||+.+.+   .++.++.+|+.|...|.++-.+
T Consensus        18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p   53 (115)
T PF12793_consen   18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP   53 (115)
T ss_pred             cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence            57899999999999   6899999999999999999986

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=82.11  E-value=2.5  Score=37.80  Aligned_cols=65  Identities=14%  Similarity=0.121  Sum_probs=51.6

Q ss_pred             hHHHHhchhcCCCeEEEecCCCC-----CCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          229 PHVVNGLESDLANLKYVGGDMFE-----AIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       229 ~~~~~~a~~~~~rv~~~~~d~~~-----~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +.+-+.+++...||.++.+|+.+     |...+|.|++..+-.-+++.+...++.++.+-+.+   |.++++-
T Consensus       296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~---gA~VifR  365 (414)
T COG5379         296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA---GARVIFR  365 (414)
T ss_pred             hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC---CcEEEEe
Confidence            34444444467899999999976     33369999999999888999999999999999998   7777653

>PF13730 HTH_36: Helix-turn-helix domain

Probab=81.94  E-value=1.6  Score=28.31  Aligned_cols=29  Identities=24%  Similarity=0.391  Sum_probs=27.0

Q ss_pred             CHHHHHHHcCCCCCCcccHHHHHHHHHhCCce
Q 037127           52 TLNDLVSALTINPSKTRCVYRLMRILIHSGFF   83 (307)
Q Consensus        52 t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l   83 (307)
                      |.+.||+.+|+   ..+.+.+.+..|...|++
T Consensus        27 S~~~la~~~g~---s~~Tv~~~i~~L~~~G~I   55 (55)
T PF13730_consen   27 SQETLAKDLGV---SRRTVQRAIKELEEKGLI   55 (55)
T ss_pred             CHHHHHHHHCc---CHHHHHHHHHHHHHCcCC
Confidence            89999999999   679999999999999985

>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.88  E-value=2.4  Score=29.96  Aligned_cols=54  Identities=20%  Similarity=0.295  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      +...++.+|-+++|+   +.+.++.++.+|-.+|+...-...+.|+|   .|.|.+..-|
T Consensus        20 ~e~~nVP~lm~~TGw---PRRT~QDvikAlpglgi~l~FvQ~G~Rnn---~GyYql~dWG   73 (95)
T COG4519          20 GETANVPELMAATGW---PRRTAQDVIKALPGLGIVLEFVQEGARNN---QGYYQLRDWG   73 (95)
T ss_pred             cccCChHHHHHHcCC---chhHHHHHHHhCcCCCeEEEeeecccccC---CCceEeeecc
Confidence            357899999999999   67899999999999999876654444444   6777776543

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=81.74  E-value=2.7  Score=36.57  Aligned_cols=75  Identities=19%  Similarity=0.288  Sum_probs=44.6

Q ss_pred             HHHHHhccccccCC--CeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhc-hh--------------cCCCeEEEe
Q 037127          184 RVVIHKCKNVFEGL--NSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGL-ES--------------DLANLKYVG  246 (307)
Q Consensus       184 ~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a-~~--------------~~~rv~~~~  246 (307)
                      +.+++++.  +.+.  .+|||.-+|-|.-+.-++..  +.++++++..+++... +.              ...|++++.
T Consensus        63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~  138 (234)
T PF04445_consen   63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH  138 (234)
T ss_dssp             SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred             cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence            34556554  3333  48999999999999988865  6789999995554432 21              135899999


Q ss_pred             cCCCC--CCC--CccEEEec
Q 037127          247 GDMFE--AIP--PADAVVLK  262 (307)
Q Consensus       247 ~d~~~--~~p--~~D~i~~~  262 (307)
                      +|..+  ..+  .+|+|.+-
T Consensus       139 ~d~~~~L~~~~~s~DVVY~D  158 (234)
T PF04445_consen  139 GDALEYLRQPDNSFDVVYFD  158 (234)
T ss_dssp             S-CCCHCCCHSS--SEEEE-
T ss_pred             CCHHHHHhhcCCCCCEEEEC
Confidence            99887  232  58998764

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG1733 Predicted transcriptional regulators [Transcription]

Probab=81.62  E-value=2.4  Score=32.79  Aligned_cols=78  Identities=18%  Similarity=0.214  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceeeeccCCCCCC
Q 037127           16 QAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALT-INPSKTRCVYRLMRILIHSGFFAQQTLNSSRNN   94 (307)
Q Consensus        16 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g-~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~   94 (307)
                      ....++++.+-|..-+|+..         ..  |+.-+.||-+.++ +   .+.-|.+-|+.|...|++.+..-.    .
T Consensus        13 ~~~~l~~ig~kW~~lIl~~L---------~~--g~~RF~eL~r~i~~I---s~k~Ls~~Lk~Le~~Glv~R~~~~----~   74 (120)
T COG1733          13 VEEALEVIGGKWTLLILRDL---------FD--GPKRFNELRRSIGGI---SPKMLSRRLKELEEDGLVERVVYP----E   74 (120)
T ss_pred             HHHHHHHHcCccHHHHHHHH---------hc--CCCcHHHHHHHcccc---CHHHHHHHHHHHHHCCCEEeeecC----C
Confidence            44556666666666665554         22  6899999999998 8   679999999999999999998631    0


Q ss_pred             CCCCCeeecChhcchhh
Q 037127           95 NDEEQGYVLTNASKLLL  111 (307)
Q Consensus        95 ~~~~~~y~~t~~s~~l~  111 (307)
                      ..-.-.|++|+.|+.|.
T Consensus        75 ~PprveY~LT~~G~~L~   91 (120)
T COG1733          75 EPPRVEYRLTEKGRDLL   91 (120)
T ss_pred             CCceeEEEEhhhHHHHH
Confidence            11123699999988665

>COG1510 Predicted transcriptional regulators [Transcription]

Probab=81.51  E-value=1.4  Score=36.10  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=33.9

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .+|+|++||++++|+   ....++.-++-|...+++.+.-
T Consensus        39 ~~Pmtl~Ei~E~lg~---Sks~vS~~lkkL~~~~lV~~~~   75 (177)
T COG1510          39 RKPLTLDEIAEALGM---SKSNVSMGLKKLQDWNLVKKVF   75 (177)
T ss_pred             CCCccHHHHHHHHCC---CcchHHHHHHHHHhcchHHhhh
Confidence            489999999999999   5789999999999999999874

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=81.51  E-value=11  Score=34.60  Aligned_cols=106  Identities=20%  Similarity=0.299  Sum_probs=59.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHH--------HHC--------CCCeEEEecchH-----HHHhchh------cCCC--eEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIA--------KAF--------PNLECTDFDLPH-----VVNGLES------DLAN--LKY  244 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~--------~~~--------p~~~~~~~Dl~~-----~~~~a~~------~~~r--v~~  244 (307)
                      ..+.-+|+|+||.+|.-+..+.        +++        |.++++.=|+|.     +......      ....  +.-
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g   93 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG   93 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence            4567899999999998775442        222        346788889852     2222221      1123  355


Q ss_pred             EecCCCCC-CC--CccEEEechhhccCC-------h------------------------------hHHHHHHHHHHHhc
Q 037127          245 VGGDMFEA-IP--PADAVVLKWILHDWN-------D------------------------------EECVKILKKCKEAI  284 (307)
Q Consensus       245 ~~~d~~~~-~p--~~D~i~~~~vLh~~~-------~------------------------------~~~~~~L~~~~~~L  284 (307)
                      ++|.|+.. +|  ..|+++.+..||-.+       +                              ++-..+|+.=++=|
T Consensus        94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL  173 (334)
T PF03492_consen   94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL  173 (334)
T ss_dssp             EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            67899883 56  489999999988332       1                              12233555445567


Q ss_pred             cCCCCCcEEEEEeeecCC
Q 037127          285 TSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       285 ~p~~~gg~lli~e~~~~~  302 (307)
                      +|   ||++++.=..+++
T Consensus       174 v~---GG~mvl~~~gr~~  188 (334)
T PF03492_consen  174 VP---GGRMVLTFLGRDE  188 (334)
T ss_dssp             EE---EEEEEEEEEE-ST
T ss_pred             cc---CcEEEEEEeeccc
Confidence            77   8999988777776

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=81.43  E-value=1.7  Score=41.37  Aligned_cols=102  Identities=16%  Similarity=0.021  Sum_probs=60.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCC--eEEEecc-hHHHHhchh-cCC-----CeEEEe---cCCCCCCC---CccEEE
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNL--ECTDFDL-PHVVNGLES-DLA-----NLKYVG---GDMFEAIP---PADAVV  260 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~--~~~~~Dl-~~~~~~a~~-~~~-----rv~~~~---~d~~~~~p---~~D~i~  260 (307)
                      .+..+.|+|.|.|.-.-.+....++.  .+..+|. -.+...... ..+     ++....   .+-+-|.+   +||+++
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi  279 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI  279 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence            35678889988775555555555553  4677887 445444433 111     111111   12222333   499999


Q ss_pred             echhhccCChhH-HHHHHHHHHHh-ccCCCCCcEEEEEeeec
Q 037127          261 LKWILHDWNDEE-CVKILKKCKEA-ITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       261 ~~~vLh~~~~~~-~~~~L~~~~~~-L~p~~~gg~lli~e~~~  300 (307)
                      ++++||.+.... .....++..+. ..+   |+.++|+|.--
T Consensus       280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g~  318 (491)
T KOG2539|consen  280 CAHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKGT  318 (491)
T ss_pred             eeeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecCC
Confidence            999999987653 23344555444 455   88999998643

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=81.31  E-value=3.8  Score=36.23  Aligned_cols=36  Identities=19%  Similarity=0.328  Sum_probs=31.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEecch
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-----PNLECTDFDLP  229 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~Dl~  229 (307)
                      +.+...++++|||.|.++..+++..     +...++.+|..
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~   56 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA   56 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence            4566799999999999999999988     56789999983

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation

Probab=81.15  E-value=3.3  Score=32.07  Aligned_cols=75  Identities=11%  Similarity=0.072  Sum_probs=52.2

Q ss_pred             HHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcCCCCChHHHHHHhcCcchhhhh
Q 037127           55 DLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPW  134 (307)
Q Consensus        55 eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~  134 (307)
                      .||+.+++   +-+-|-.+++++.-+||++..           +|-..+|+.|+.++..+......++.-... ...+..
T Consensus         2 ~La~~l~~---eiDdL~p~~eAaelLgf~~~~-----------~Gdi~LT~~G~~f~~a~~~~rK~if~~~l~-~~~Pl~   66 (120)
T PF09821_consen    2 QLADELHL---EIDDLLPIVEAAELLGFAEVE-----------EGDIRLTPLGRRFAEADIDERKEIFREQLL-RHVPLA   66 (120)
T ss_pred             chHHHhCC---cHHHHHHHHHHHHHcCCeeec-----------CCcEEeccchHHHHHCChHHHHHHHHHHHH-hcCCHH
Confidence            57888998   678899999999999999998           589999999998886553333333222111 112334


Q ss_pred             hhHHHhhhcC
Q 037127          135 LKLSTWFQSD  144 (307)
Q Consensus       135 ~~l~~~l~~~  144 (307)
                      ..+...+++.
T Consensus        67 ~~I~~~L~~~   76 (120)
T PF09821_consen   67 AHIRRVLRER   76 (120)
T ss_pred             HHHHHHHHhC
Confidence            5566677654

>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks

Probab=81.15  E-value=1.2  Score=31.33  Aligned_cols=46  Identities=22%  Similarity=0.366  Sum_probs=37.5

Q ss_pred             CcccccccCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           39 SIPDIINKHG-KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        39 glfd~L~~~~-~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .+++.|.... .+++..+|+..+|.   |++.+...++.|...|++.+..
T Consensus         6 ~~Le~I~rsR~~Gi~q~~L~~~~~~---D~r~i~~~~k~L~~~gLI~k~~   52 (75)
T PF04182_consen    6 CLLERIARSRYNGITQSDLSKLLGI---DPRSIFYRLKKLEKKGLIVKQS   52 (75)
T ss_pred             HHHHHHHhcCCCCEehhHHHHHhCC---CchHHHHHHHHHHHCCCEEEEE
Confidence            3444444321 57899999999999   7899999999999999999986

This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.63  E-value=13  Score=33.83  Aligned_cols=96  Identities=15%  Similarity=0.086  Sum_probs=66.0

Q ss_pred             ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC--C--------CC--CccEE
Q 037127          194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE--A--------IP--PADAV  259 (307)
Q Consensus       194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~--~--------~p--~~D~i  259 (307)
                      .....+||=+|+| .|..+...++.+...++++.|+ +.-++.|++....+.........  .        ..  .+|+.
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~  246 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT  246 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence            5567899999999 6888888899999999999999 78888888733222222211111  0        11  16666


Q ss_pred             EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      +-...++        .-++.+..++++   ||.++++...-
T Consensus       247 ~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~  276 (354)
T KOG0024|consen  247 FDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGA  276 (354)
T ss_pred             EEccCch--------HHHHHHHHHhcc---CCEEEEeccCC
Confidence            6555554        556777888998   89988887543

>COG1522 Lrp Transcriptional regulators [Transcription]

Probab=80.28  E-value=1.5  Score=35.15  Aligned_cols=48  Identities=15%  Similarity=0.252  Sum_probs=41.0

Q ss_pred             HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .+..++..|..+ ++.|..+||+++|+   ++..+.+-++-|...|++....
T Consensus         9 ~D~~IL~~L~~d-~r~~~~eia~~lgl---S~~~v~~Ri~~L~~~GiI~~~~   56 (154)
T COG1522           9 IDRRILRLLQED-ARISNAELAERVGL---SPSTVLRRIKRLEEEGVIKGYT   56 (154)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCceeeEE
Confidence            455677778775 78999999999999   5788999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	307
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		1e-77
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		2e-73
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		5e-73
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		1e-68
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		6e-68
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		1e-67
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		3e-39
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		6e-39
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		3e-35
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		4e-30
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		1e-25
3gwz_A	369	Structure Of The Mitomycin 7-O-Methyltransferase Mm		1e-19
3lst_A	348	Crystal Structure Of Calo1, Methyltransferase In Ca		2e-13
2ip2_A	334	Structure Of The Pyocyanin Biosynthetic Protein Phz		1e-12
1x19_A	359	Crystal Structure Of Bchu Involved In Bacteriochlor		3e-12
1tw2_A	360	Crystal Structure Of Carminomycin-4-O-Methyltransfe		4e-10
1qzz_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		9e-10
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		3e-09
1xds_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		6e-06
3i53_A	332	Crystal Structure Of An O-Methyltransferase (Ncsb1)		1e-05

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  286 bits (732), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 148/304 (48%), Positives = 203/304 (66%), Gaps = 10/304 (3%)
Query: 4   IDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTIN 63
           I+G   +E+ +AQA ++ HI+ FI+SMSLK AVE++IP+II  HGKP +L++LVS L + 
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 64  PSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQ 123
            SK   V RLMR L H+GFF   T         EE+ Y LT AS+LL++ S L + P+++
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIIT--------KEEESYALTVASELLVRGSDLCLAPMVE 116
Query: 124 AVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLAT 183
            VLDP L   + +L  W   +D   F +  G  FW++    P+ N  FN+AMASD++L  
Sbjct: 117 CVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-I 175
Query: 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLK 243
            + +  C  VF+GL S+VDVGG TGT AK I + FP L+C  FD P VV  L S   NL 
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLT 234
Query: 244 YVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303
           YVGGDMF +IP ADAV+LK+ILH+W D++C++ILKKCKEA+T++ K GKV IIDM+ + K
Sbjct: 235 YVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKK 294
Query: 304 KGDD 307
           K ++
Sbjct: 295 KDEN 298

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score =  271 bits (694), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 140/304 (46%), Positives = 198/304 (65%), Gaps = 5/304 (1%)
Query: 4   IDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTIN 63
           I+    +E+ +AQA ++ +++ F++SMSLK ++E++IP+II+ HGKP TL++LVS L I 
Sbjct: 5   INNRKPSEIFKAQALLYKNMYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIP 64
Query: 64  PSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQ 123
            +K   V RLMR L H+GFF   T     N   EE+ Y LT AS+LL+K + L + P+++
Sbjct: 65  STKVDNVQRLMRYLAHNGFFEIITNQELEN---EEEAYALTVASELLVKGTELCLAPMVE 121
Query: 124 AVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLAT 183
            VLDP L + +  L  W   +D   F +  G   WE+    P+ N  +N+A+ASD+++  
Sbjct: 122 CVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKM-I 180
Query: 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLK 243
            + +  C  VFEGL S+VDVGG  GT  K I + FP L C  FD P VV  L     NL 
Sbjct: 181 NLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGS-NNLT 239
Query: 244 YVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303
           YVGGDMF ++P ADAV+LK +LHDW D++C+KILKKCKEA+TS+ K GKVI+IDM+   K
Sbjct: 240 YVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEK 299
Query: 304 KGDD 307
           K ++
Sbjct: 300 KDEN 303

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  271 bits (692), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 143/304 (47%), Positives = 196/304 (64%), Gaps = 10/304 (3%)
Query: 4   IDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTIN 63
           I+G   +E+ +AQA ++ HI+ FI+S SLK AVE +IP+II  HGKP +L++LVS L + 
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 64  PSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQ 123
            SK   V RL R L H+GFF   T         EE+ Y LT AS+LL++ S L + P ++
Sbjct: 65  SSKIGNVRRLXRYLAHNGFFEIIT--------KEEESYALTVASELLVRGSDLCLAPXVE 116
Query: 124 AVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLAT 183
            VLDP L   + +L  W   +D   F +  G  FW++    P+ N  FN+A ASD++L  
Sbjct: 117 CVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKL-I 175
Query: 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLK 243
            + +  C  VF+GL S+VDVGG TGT AK I + FP L+C  FD P VV  L S   NL 
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLT 234
Query: 244 YVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303
           YVGGD F +IP ADAV+LK+ILH+W D++C++ILKKCKEA+T++ K GKV IID + + K
Sbjct: 235 YVGGDXFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKK 294
Query: 304 KGDD 307
           K ++
Sbjct: 295 KDEN 298

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score =  256 bits (653), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/296 (46%), Positives = 196/296 (66%), Gaps = 5/296 (1%)
Query: 6   GDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPS 65
           G  ++EL  AQ H++ H++NF++SM+LK A+EL I D I+ HGKP TL++L S+L ++PS
Sbjct: 1   GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPS 60
Query: 66  KTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAV 125
           K   ++R +R+L H+GFFA+  +     + +EE  Y LT  SKLL+   P  ++ +++  
Sbjct: 61  KVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGA 120
Query: 126 LDPILLSPWLKLSTWFQSD-DPAPFDMVHGKSFWEYAG--DEPKINNFFNEAMASDARLA 182
           L P  L  W     WF  D +   F+   G+SFW++     E    + F +AMASD+R+ 
Sbjct: 121 LHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 180
Query: 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANL 242
            ++V+ + K VFEGL SLVDVGG TG V K I + FP+L+CT FD P VV  L  +  NL
Sbjct: 181 -KLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENL 238
Query: 243 KYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298
            +VGGDMF++IP ADAV+LKW+LHDWNDE+ +KILK  KEAI+   K GKVIIID+
Sbjct: 239 NFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI 294

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score =  254 bits (648), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 138/293 (47%), Positives = 195/293 (66%), Gaps = 5/293 (1%)
Query: 9   DTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTR 68
           ++EL  AQ H++ H++NF++SM+LK A+EL I D I+ HGKP TL++L S+L ++PSK  
Sbjct: 3   ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVN 62
Query: 69  CVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDP 128
            ++R +R+L H+GFFA+  +     + +EE  Y LT  SKLL+   P  ++ +++  L P
Sbjct: 63  ILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHP 122
Query: 129 ILLSPWLKLSTWFQSD-DPAPFDMVHGKSFWEYAG--DEPKINNFFNEAMASDARLATRV 185
             L  W     WF  D +   F+   G+SFW++     E    + F +AMASD+R+  ++
Sbjct: 123 SSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-KL 181
Query: 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYV 245
           V+ + K VFEGL SLVDVGG TG V K I + FP+L+CT FD P VV  L  +  NL +V
Sbjct: 182 VLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNFV 240
Query: 246 GGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298
           GGDMF++IP ADAV+LKW+LHDWNDE+ +KILK  KEAI+   K GKVIIID+
Sbjct: 241 GGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI 293

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score =  253 bits (646), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 138/292 (47%), Positives = 194/292 (66%), Gaps = 5/292 (1%)
Query: 10  TELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRC 69
           +EL  AQ H++ H++NF++SM+LK A+EL I D I+ HGKP TL++L S+L ++PSK   
Sbjct: 1   SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNI 60
Query: 70  VYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPI 129
           ++R +R+L H+GFFA+  +     + +EE  Y LT  SKLL+   P  ++ +++  L P 
Sbjct: 61  LHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPS 120
Query: 130 LLSPWLKLSTWFQSD-DPAPFDMVHGKSFWEYAG--DEPKINNFFNEAMASDARLATRVV 186
            L  W     WF  D +   F+   G+SFW++     E    + F +AMASD+R+  ++V
Sbjct: 121 SLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-KLV 179
Query: 187 IHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVG 246
           + + K VFEGL SLVDVGG TG V K I + FP+L+CT FD P VV  L  +  NL +VG
Sbjct: 180 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNFVG 238
Query: 247 GDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298
           GDMF++IP ADAV+LKW+LHDWNDE+ +KILK  KEAI+   K GKVIIID+
Sbjct: 239 GDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI 290

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 150/272 (55%), Gaps = 12/272 (4%)
Query: 30  MSLKCAVELSIPDIINKHGKPTTLN--DLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQ 86
           M LK A+EL + +II K G    ++  ++ S L T NP     + R++R+L  + +    
Sbjct: 34  MILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLL--ACYIILT 91
Query: 87  TLNSSRNNNDEEQGYVLTNASKLLLK-DSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDD 145
               ++ +   ++ Y L   +K L+K +  +S++ L     D +L+  W  L      D 
Sbjct: 92  CSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVL-DG 150
Query: 146 PAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGG 205
             PF+  +G + +EY G +P+ N  FN+ M+  + +  + ++      FEGL SLVDVGG
Sbjct: 151 GIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-FEGLKSLVDVGG 209
Query: 206 ATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWIL 265
            TG V   I   +P ++  +FDLPHV+    S    +++VGGDMF +IP ADAV +KWI 
Sbjct: 210 GTGAVINTIVSKYPTIKGINFDLPHVIEDAPS-YPGVEHVGGDMFVSIPKADAVFMKWIC 268
Query: 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIID 297
           HDW+DE C+K LK C EA+  N   GKVI+ +
Sbjct: 269 HDWSDEHCLKFLKNCYEALPDN---GKVIVAE 297

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  157 bits (398), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 156/277 (56%), Gaps = 17/277 (6%)
Query: 30  MSLKCAVELSIPDIINKHGKPT---TLNDLVSAL-TINPSKTRCVYRLMRILIHSGF--F 83
           M+LK A+EL + +I+ K   P+   +  ++ + L T NP     + R++R+L       +
Sbjct: 36  MALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTY 95
Query: 84  AQQTLNSSRNNNDEEQGYVLTNASKLLLK-DSPLSVTPLLQAVLDPILLSPWLKLSTWFQ 142
             + L S +     E+ Y L    K L K +  +S+ P L    D +LL PW  L     
Sbjct: 96  TLRELPSGK----VERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAIL 151
Query: 143 SDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVD 202
            +   PF+  +G + ++Y G + +IN  FN+ M+S++ +  + ++ +  N FEGL ++VD
Sbjct: 152 -EGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKIL-EMYNGFEGLTTIVD 209
Query: 203 VGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLK 262
           VGG TG VA  I   +P++   +FDLPHV+    +  + ++++GGDMF+ +P  DA+ +K
Sbjct: 210 VGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA-FSGVEHLGGDMFDGVPKGDAIFIK 268
Query: 263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299
           WI HDW+DE C+K+LK C  A+  +   GKVI+ + +
Sbjct: 269 WICHDWSDEHCLKLLKNCYAALPDH---GKVIVAEYI 302

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 144/272 (52%), Gaps = 12/272 (4%)
Query: 30  MSLKCAVELSIPDI-INKHGKPTTLNDLVSAL--TINPSKTRCVYRLMRILIHSGFFAQQ 86
           M+LK A+EL + +I +   GK  T  ++ + L    NP     V R++R+L  + +    
Sbjct: 35  MTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLL--ASYNVVT 92
Query: 87  TLNSSRNNNDEEQGYVLTNASKLLL-KDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDD 145
            L     +    + Y      K L   +  +S+  L     D +L+  W  L      D 
Sbjct: 93  CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVL-DG 151
Query: 146 PAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGG 205
             PF+  +G S +EY G +P+ N  FNE M + + + T+ ++ +  + FEGL +LVDVGG
Sbjct: 152 GIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL-ELYHGFEGLGTLVDVGG 210
Query: 206 ATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWIL 265
             G    AIA  +P ++  +FDLPHV++        + +VGGDMF+ +P  D +++KWIL
Sbjct: 211 GVGATVAAIAAHYPTIKGVNFDLPHVIS-EAPQFPGVTHVGGDMFKEVPSGDTILMKWIL 269
Query: 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIID 297
           HDW+D+ C  +LK C +A+ ++   GKV+++ 
Sbjct: 270 HDWSDQHCATLLKNCYDALPAH---GKVVLVQ 298

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 144/280 (51%), Gaps = 10/280 (3%)
Query: 25  NFINSMSLKCAVELSIPDIINKHGKPTTL---NDLVSALTINPSKTRCVYRLMRIL-IHS 80
           N +    L  A++L++ +II K   P      +++ S L  +   +    RL R+L + +
Sbjct: 34  NLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLA 93
Query: 81  GFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVL-DPILLSPWLKLST 139
            +    +   +  +   E+ Y L+   K L+ D            L  P LL  W+    
Sbjct: 94  SYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKE 153
Query: 140 WFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNS 199
               +D   F  VHG + +E+ G + K+N  FN++M        + ++ +    FEG+++
Sbjct: 154 AVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRML-EIYTGFEGIST 212
Query: 200 LVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAV 259
           LVDVGG +G   + I   +P ++  +FDLP V+      L+ +++VGGDMF ++P  DA+
Sbjct: 213 LVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN-APPLSGIEHVGGDMFASVPQGDAM 271
Query: 260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299
           +LK + H+W+DE+C++ L  C +A++ N   GKVII++ +
Sbjct: 272 ILKAVCHNWSDEKCIEFLSNCHKALSPN---GKVIIVEFI 308

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 6/203 (2%)
Query: 98  EQGYVLTNASKLLLKDSPLSVTPLLQAVL-DPILLSPWLKLSTWFQSDDPAPFDMVHGKS 156
           E+ Y L+   K L+ D            L  P LL  W         +D   F  VHG +
Sbjct: 111 ERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHGVT 170
Query: 157 FWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAK 216
            +E+ G + K N  FN++         +  + +    FEG+++LVDVGG +G   + I  
Sbjct: 171 KYEFXGKDKKXNQIFNKSXVDVCATEXKRXL-EIYTGFEGISTLVDVGGGSGRNLELIIS 229
Query: 217 AFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKI 276
            +P ++  +FDLP V+      L+ +++VGGD F ++P  DA +LK + H+W+DE+C++ 
Sbjct: 230 KYPLIKGINFDLPQVIEN-APPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKCIEF 288
Query: 277 LKKCKEAITSNSKIGKVIIIDMM 299
           L  C +A++ N   GKVII++ +
Sbjct: 289 LSNCHKALSPN---GKVIIVEFI 308

>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 129/296 (43%), Gaps = 53/296 (17%)
Query: 28  NSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTR------CVYRLMRILIHSG 81
            + ++  AVEL +P+++ +   P T   L  A   +    R          +   L H  
Sbjct: 51  KARAIHVAVELGVPELLQE--GPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDD 108
Query: 82  FFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD--SPLSVTPLLQAVLDPILLSPWLKLST 139
            FAQ  L                  S +LL D  SP++     QA   P     W +L+ 
Sbjct: 109 LFAQNAL------------------SAVLLPDPASPVATDARFQAA--PWHWRAWEQLTH 148
Query: 140 WFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNV-----F 194
             ++ + A FD+ +G SFW+   ++PK    FN A  S       V + +   V     F
Sbjct: 149 SVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAXGS-------VSLTEAGQVAAAYDF 200
Query: 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLAN------LKYVGGD 248
            G  + VD+GG  G++  A+  AFP L  T  + P V       L         + + GD
Sbjct: 201 SGAATAVDIGGGRGSLXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGD 260
Query: 249 MFEAIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303
            FE IP  AD  ++K +LHDW+D++ V+IL++   A   +S++   ++ID + + +
Sbjct: 261 FFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAXKPDSRL---LVIDNLIDER 313

>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 10/203 (4%)
Query: 101 YVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEY 160
           + LT+    L  DSP+     +    D    +   ++++    + PA F  + G S   Y
Sbjct: 92  FALTDKGAALRSDSPVPARAGILXFTDTXFWTXSHRVASALGPERPA-FADIFGSSLDAY 150
Query: 161 AGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN 220
              + ++   + E   +    A  +++ +  + F    ++ DVGG  G     + +  P 
Sbjct: 151 FDGDAEVEALYYEGXET-VSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPG 208
Query: 221 LECTDFDLPHVVNGLESDLANL----KYVGGDMFEAIPPADAVVLKWILHDWNDEECVKI 276
           L+    D   VV     D  ++    K V GD    +P AD  VLK ILH+W DE+ V+I
Sbjct: 209 LQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRI 268
Query: 277 LKKCKEAITSNSKIGKVIIIDMM 299
           L  C+    ++   G+V++ID +
Sbjct: 269 LTNCRRVXPAH---GRVLVIDAV 288

>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 113/264 (42%), Gaps = 44/264 (16%)
Query: 66  KTRCVYRLMRI----LIHSGFFAQQTLNSSRNNN-------------------DEEQGYV 102
           K+RCVY   R+    LI SG  + +TL ++  ++                   D   GY 
Sbjct: 21  KSRCVYVATRLGLADLIESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYA 80
Query: 103 LTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAG 162
            T  S LL +D   S   ++    +    + W        S  P  F++  G+ F+ Y  
Sbjct: 81  NTPTSHLL-RDVEGSFRDMVLFYGEE-FHAAWTPACEALLSGTPG-FELAFGEDFYSYLK 137
Query: 163 DEPKINNFFNEAMASDARLATRVVIHKCKNV--FEGLNSLVDVGGATGTVAKAIAKAFPN 220
             P     F  AM      A+ +  H+   +  F G  S VDVGG +G + KAI +A P+
Sbjct: 138 RCPDAGRRFLLAMK-----ASNLAFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPS 191
Query: 221 LECTDFDLPHVVNGLESDLANL------KYVGGDMFEAIPP-ADAVVLKWILHDWNDEEC 273
                 D    +     +L++L        VGGDM + +P   D  +L  I+ D ++   
Sbjct: 192 ARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAAS 251
Query: 274 VKILKKCKEAITSNSKIGKVIIID 297
           +++L  C+EA+  +   G+V++I+
Sbjct: 252 LRLLGNCREAMAGD---GRVVVIE 272

>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 80/139 (57%), Gaps = 12/139 (8%)
Query: 168 NNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFD 227
           N +F E   S+A+ A ++++ + K   +G+  ++DVGG  G ++ A+ K FP L+ T  +
Sbjct: 164 NLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILN 221
Query: 228 LPHVV-----NGLESDLAN-LKYVGGDMF-EAIPPADAVVLKWILHDWNDEECVKILKKC 280
           LP  +     N  E  +A+ ++ +  D++ E+ P ADAV+   IL+  N++    + KK 
Sbjct: 222 LPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKA 281
Query: 281 KEAITSNSKIGKVIIIDMM 299
            +A+ S    G+++I+DM+
Sbjct: 282 FDAMRSG---GRLLILDMV 297

>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 29/238 (12%)
Query: 65  SKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTP---L 121
           ++   + RL+R L+  G              D    +V T   +LL  D P +      L
Sbjct: 64  TRPEALLRLIRHLVAIGLL----------EEDAPGEFVPTEVGELLADDHPAAQRAWHDL 113
Query: 122 LQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARL 181
            QAV    +   + +L    ++  P  ++ ++GK F+E     P +   F+  +A D  +
Sbjct: 114 TQAVARADI--SFTRLPDAIRTGRPT-YESIYGKPFYEDLAGRPDLRASFDSLLACDQDV 170
Query: 182 A--TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDL 239
           A       +   NV      ++DVGG  G  A AIA+  P++  T  ++   V+   S L
Sbjct: 171 AFDAPAAAYDWTNV----RHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYL 226
Query: 240 AN------LKYVGGDMFEAIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKI 290
            +      +  V GD FE +P  ADA++L ++L +W D + V+IL +C EA+    +I
Sbjct: 227 KDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRI 284

>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 14/161 (8%)
Query: 153 HGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAK 212
           +G+ FWE    +  + + F+  M+ D  LA           +  +  ++DVGG  G +  
Sbjct: 141 YGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLA 198
Query: 213 AIAKAFPNLECTDFDLPHVVNGLESDLAN------LKYVGGDMFEAIP-PADAVVLKWIL 265
           AIA   P+L  T  +L           A+      +    GD F+ +P  AD V+L ++L
Sbjct: 199 AIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVL 258
Query: 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKGD 306
            +W+DE+ + IL+ C  A+      G+++++D  R + +GD
Sbjct: 259 LNWSDEDALTILRGCVRALEPG---GRLLVLD--RADVEGD 294

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 200 LVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA-----NLKYVGGDMF-EAI 253
           + D+GG  G +AK     +P  + T FD+P VV   +   +      + +  GD F + +
Sbjct: 183 MCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242
Query: 254 PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG 305
           P AD  +L  +LHDW D +C  +L++     T     G ++I  ++ E+++G
Sbjct: 243 PEADLYILARVLHDWADGKCSHLLERIYH--TCKPGGGILVIESLLDEDRRG 292

>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 153 HGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAK 212
           +G+ FWE    +  + + F+   + D  LA           +  +  ++DVGG  G    
Sbjct: 141 YGRPFWEDLSADVALADSFDALXSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGXLA 198
Query: 213 AIAKAFPNLECTDFDLPHVVNGLESDLAN------LKYVGGDMFEAIP-PADAVVLKWIL 265
           AIA   P+L  T  +L           A+      +    GD F+ +P  AD V+L ++L
Sbjct: 199 AIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVL 258
Query: 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKGD 306
            +W+DE+ + IL+ C  A+      G+++++D  R + +GD
Sbjct: 259 LNWSDEDALTILRGCVRALEPG---GRLLVLD--RADVEGD 294

>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 134 WLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNV 193
           +++L+   ++  PA + + +G SFWE  G +P ++  F+  M+    L    +    K  
Sbjct: 110 FVELAHSIRTGQPA-YPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGI--AAKYD 166
Query: 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNG-----LESDLAN-LKYVGG 247
           +  L  +VDVGG +G +  A+  A  +L  T  DL    +      L++ L+   + V G
Sbjct: 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVG 226
Query: 248 DMFEAIPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297
             F+ +P  A   VL  +LHDW+D   V IL++C EA  S    G V++I+
Sbjct: 227 SFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSG---GVVLVIE 274

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	1e-131
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	1e-129
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	1e-126
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	1e-119
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	1e-119
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	1e-119
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	1e-115
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	1e-115
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	1e-115
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	1e-112
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	1e-111
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	1e-104
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	5e-88
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	7e-86
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	7e-85
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	1e-07
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	8e-06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	8e-05

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  375 bits (965), Expect = e-131
 Identities = 146/304 (48%), Positives = 200/304 (65%), Gaps = 10/304 (3%)

Query: 4   IDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTIN 63
           I+G   +E+ +AQA ++ HI+ FI+SMSLK AVE++IP+II  HGKP +L++LVS L + 
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64

Query: 64  PSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQ 123
            SK   V RLMR L H+GFF             EE+ Y LT AS+LL++ S L + P+++
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEII--------TKEEESYALTVASELLVRGSDLCLAPMVE 116

Query: 124 AVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLAT 183
            VLDP L   + +L  W   +D   F +  G  FW++    P+ N  FN+AMASD++L  
Sbjct: 117 CVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN 176

Query: 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLK 243
             +   C  VF+GL S+VDVGG TGT AK I + FP L+C  FD P VV  L     NL 
Sbjct: 177 LALRD-CDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGS-NNLT 234

Query: 244 YVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303
           YVGGDMF +IP ADAV+LK+ILH+W D++C++ILKKCKEA+T++ K GKV IIDM+ + K
Sbjct: 235 YVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKK 294

Query: 304 KGDD 307
           K ++
Sbjct: 295 KDEN 298

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  372 bits (956), Expect = e-129
 Identities = 139/305 (45%), Positives = 197/305 (64%), Gaps = 5/305 (1%)

Query: 6   GDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPS 65
           G  ++EL  AQ H++ H++NF++SM+LK A+EL I D I+ HGKP TL++L S+L ++PS
Sbjct: 1   GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPS 60

Query: 66  KTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAV 125
           K   ++R +R+L H+GFFA+  +     + +EE  Y LT  SKLL+   P  ++ +++  
Sbjct: 61  KVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGA 120

Query: 126 LDPILLSPWLKLSTWFQSD-DPAPFDMVHGKSFWEYAGDEPKINNF--FNEAMASDARLA 182
           L P  L  W     WF  D +   F+   G+SFW++   + + +    F +AMASD+R+ 
Sbjct: 121 LHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 180

Query: 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANL 242
             V+  + K VFEGL SLVDVGG TG V K I + FP+L+CT FD P VV  L  +  NL
Sbjct: 181 KLVLQ-ENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENL 238

Query: 243 KYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302
            +VGGDMF++IP ADAV+LKW+LHDWNDE+ +KILK  KEAI+   K GKVIIID+  + 
Sbjct: 239 NFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE 298

Query: 303 KKGDD 307
              D 
Sbjct: 299 TSDDR 303

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  362 bits (932), Expect = e-126
 Identities = 62/306 (20%), Positives = 120/306 (39%), Gaps = 26/306 (8%)

Query: 6   GDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPS 65
              D + L++   ++     +  + +L+ A  + + D +     P T  +L +A   +  
Sbjct: 13  AGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHL--VDGPRTPAELAAATGTDA- 69

Query: 66  KTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAV 125
               + R++R+L       +            +  + LT+    L  DSP+     +   
Sbjct: 70  --DALRRVLRLLAVRDVVRE-----------SDGRFALTDKGAALRSDSPVPARAGILMF 116

Query: 126 LDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRV 185
            D +  +   ++++    + P  F  + G S   Y   + ++   + E M + +     +
Sbjct: 117 TDTMFWTMSHRVASALGPERP-AFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLI 175

Query: 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA----N 241
           +       F    ++ DVGG  G     + +  P L+    D   VV     D       
Sbjct: 176 LARAG--DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGR 233

Query: 242 LKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301
            K V GD    +P AD  VLK ILH+W DE+ V+IL  C+  + ++   G+V++ID +  
Sbjct: 234 WKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAH---GRVLVIDAVVP 290

Query: 302 NKKGDD 307
                 
Sbjct: 291 EGNDAH 296

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  347 bits (892), Expect = e-119
 Identities = 75/300 (25%), Positives = 128/300 (42%), Gaps = 27/300 (9%)

Query: 7   DHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSK 66
                   A+  V + +     + ++  AVEL +P+++     P T   L  A   +   
Sbjct: 30  PGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELL--QEGPRTATALAEATGAHEQT 87

Query: 67  TRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVL 126
              + RL+R+L   G F              +  +     S +LL D    V    +   
Sbjct: 88  ---LRRLLRLLATVGVFDD---------LGHDDLFAQNALSAVLLPDPASPVATDARFQA 135

Query: 127 DPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVV 186
            P     W +L+   ++ +   FD+ +G SFW+   ++PK    FN AM S +      V
Sbjct: 136 APWHWRAWEQLTHSVRTGEA-SFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQV 194

Query: 187 IHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA------ 240
                  F G  + VD+GG  G++  A+  AFP L  T  + P V       L       
Sbjct: 195 AAAY--DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLAD 252

Query: 241 NLKYVGGDMFEAIPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299
             + + GD FE IP  AD  ++K +LHDW+D++ V+IL++   A+  +    ++++ID +
Sbjct: 253 RCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPD---SRLLVIDNL 309

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  347 bits (891), Expect = e-119
 Identities = 91/304 (29%), Positives = 153/304 (50%), Gaps = 13/304 (4%)

Query: 9   DTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPT---TLNDLVSAL-TINP 64
            +   EA           +  M+LK A+EL + +I+ K   P+   +  ++ + L T NP
Sbjct: 15  HSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNP 74

Query: 65  SKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSP-LSVTPLLQ 123
                + R++R+L                +   E+ Y L    K L K+   +S+ P L 
Sbjct: 75  EAPVMLDRVLRLLASYSVVTYTLREL--PSGKVERLYGLAPVCKFLTKNEDGVSLAPFLL 132

Query: 124 AVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLAT 183
              D +LL PW  L          PF+  +G + ++Y G + +IN  FN+ M+S++ +  
Sbjct: 133 LATDKVLLEPWFYLKDAILEGGI-PFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITM 191

Query: 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLK 243
           + ++      FEGL ++VDVGG TG VA  I   +P++   +FDLPHV+    +  + ++
Sbjct: 192 KKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF-SGVE 249

Query: 244 YVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303
           ++GGDMF+ +P  DA+ +KWI HDW+DE C+K+LK C  A+  +   GKVI+ + +    
Sbjct: 250 HLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDH---GKVIVAEYILPPS 306

Query: 304 KGDD 307
               
Sbjct: 307 PDPS 310

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  345 bits (886), Expect = e-119
 Identities = 79/306 (25%), Positives = 146/306 (47%), Gaps = 14/306 (4%)

Query: 9   DTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKP---TTLNDLVSALTINPS 65
           +     A         N +    L  A++L++ +II K   P    + +++ S L  +  
Sbjct: 18  EQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQ 77

Query: 66  KTRC---VYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPL-SVTPL 121
            +     + R++R+L         T   +  +   E+ Y L+   K L+ D     +   
Sbjct: 78  HSDLPNRLDRMLRLLASYSVLTSTT--RTIEDGGAERVYGLSMVGKYLVPDESRGYLASF 135

Query: 122 LQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARL 181
              +  P LL  W+        +D   F  VHG + +E+ G + K+N  FN++M      
Sbjct: 136 TTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCAT 195

Query: 182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLAN 241
             + ++      FEG+++LVDVGG +G   + I   +P ++  +FDLP V+       + 
Sbjct: 196 EMKRMLE-IYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL-SG 253

Query: 242 LKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301
           +++VGGDMF ++P  DA++LK + H+W+DE+C++ L  C +A++ N   GKVII++ +  
Sbjct: 254 IEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPN---GKVIIVEFILP 310

Query: 302 NKKGDD 307
            +    
Sbjct: 311 EEPNTS 316

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  337 bits (865), Expect = e-115
 Identities = 65/310 (20%), Positives = 116/310 (37%), Gaps = 27/310 (8%)

Query: 6   GDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPS 65
           G+      +    +  ++ N +  M+L+ A  L + D +       TL  L      +P 
Sbjct: 7   GEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHL--LAGADTLAGLADRTDTHP- 63

Query: 66  KTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAV 125
             + + RL+R L   G               + +    T    LL    P      L   
Sbjct: 64  --QALSRLVRHLTVVGVLEGGE--------KQGRPLRPTRLGMLLADGHPAQQRAWLDLN 113

Query: 126 LDPI-LLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATR 184
                    +  L    ++  P  +   +G+ FWE    +  + + F+  M+ D  LA  
Sbjct: 114 GAVSHADLAFTGLLDVVRTGRP-AYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYE 172

Query: 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA---- 240
                    +  +  ++DVGG  G +  AIA   P+L  T  +L           A    
Sbjct: 173 APADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL 230

Query: 241 --NLKYVGGDMFEAIPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297
              +    GD F+ +P  AD V+L ++L +W+DE+ + IL+ C  A+      G+++++D
Sbjct: 231 ADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG---GRLLVLD 287

Query: 298 MMRENKKGDD 307
                  G D
Sbjct: 288 RADVEGDGAD 297

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  335 bits (861), Expect = e-115
 Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 29/294 (9%)

Query: 14  EAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRL 73
            A       + +    M+++ A  L + D I       T  ++ SA   +      + RL
Sbjct: 4   RAAHIGLRALADLATPMAVRVAATLRVADHI--AAGHRTAAEIASAAGAHA---DSLDRL 58

Query: 74  MRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSP 133
           +R L+  G F +          D +  Y LT   + L  D        L           
Sbjct: 59  LRHLVAVGLFTR----------DGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDL 108

Query: 134 -WLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKN 192
            +++L+   ++  P  + + +G SFWE  G +P ++  F+  M+    L    +  K   
Sbjct: 109 GFVELAHSIRTGQP-AYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD- 166

Query: 193 VFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA------NLKYVG 246
            +  L  +VDVGG +G +  A+  A  +L  T  DL    +               + V 
Sbjct: 167 -WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVV 225

Query: 247 GDMFEAIPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299
           G  F+ +P  A   VL  +LHDW+D   V IL++C EA  S    G V++I+ +
Sbjct: 226 GSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSG---GVVLVIEAV 276

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  334 bits (859), Expect = e-115
 Identities = 89/312 (28%), Positives = 150/312 (48%), Gaps = 13/312 (4%)

Query: 1   MNLIDGDH-DTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINK-HGKPTTLNDLVS 58
           M     D   +   +A         + +  M+LK A+EL + +I+    GK  T  ++ +
Sbjct: 5   MGSTAADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAA 64

Query: 59  AL--TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSP- 115
            L    NP     V R++R+L                +    + Y      K L  +   
Sbjct: 65  KLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGK--DGRLSRSYGAAPVCKFLTPNEDG 122

Query: 116 LSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAM 175
           +S+  L     D +L+  W  L      D   PF+  +G S +EY G +P+ N  FNE M
Sbjct: 123 VSMAALALMNQDKVLMESWYYLKDAVL-DGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGM 181

Query: 176 ASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGL 235
            + + + T+ ++ +  + FEGL +LVDVGG  G    AIA  +P ++  +FDLPHV++  
Sbjct: 182 KNHSIIITKKLL-ELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEA 240

Query: 236 ESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII 295
                 + +VGGDMF+ +P  D +++KWILHDW+D+ C  +LK C +A+ ++   GKV++
Sbjct: 241 PQF-PGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAH---GKVVL 296

Query: 296 IDMMRENKKGDD 307
           +  +       +
Sbjct: 297 VQCILPVNPEAN 308

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  328 bits (844), Expect = e-112
 Identities = 67/297 (22%), Positives = 123/297 (41%), Gaps = 30/297 (10%)

Query: 11  ELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCV 70
           + ++A   +   + +    M ++ A  L + D I       T+  L +     P     +
Sbjct: 16  QQIDALRTLI-RLGSLHTPMVVRTAATLRLVDHI--LAGARTVKALAARTDTRP---EAL 69

Query: 71  YRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQ-AVLDPI 129
            RL+R L+  G   +          D    +V T   +LL  D P +             
Sbjct: 70  LRLIRHLVAIGLLEE----------DAPGEFVPTEVGELLADDHPAAQRAWHDLTQAVAR 119

Query: 130 LLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHK 189
               + +L    ++  P  ++ ++GK F+E     P +   F+  +A D  +A       
Sbjct: 120 ADISFTRLPDAIRTGRP-TYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAA 178

Query: 190 CKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA------NLK 243
               +  +  ++DVGG  G  A AIA+  P++  T  ++   V+   S L        + 
Sbjct: 179 Y--DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVD 236

Query: 244 YVGGDMFEAIPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299
            V GD FE +P  ADA++L ++L +W D + V+IL +C EA+      G+++I +  
Sbjct: 237 VVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG---GRILIHERD 290

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  324 bits (832), Expect = e-111
 Identities = 68/298 (22%), Positives = 118/298 (39%), Gaps = 32/298 (10%)

Query: 9   DTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTR 68
           +   L A  ++   +     S  +  A  L + D+I       +   L +A+  +     
Sbjct: 2   NNSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLI--ESGIDSDETLAAAVGSDA---E 56

Query: 69  CVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDP 128
            ++RLMR+L+    F            D   GY  T  S LL +D   S   ++    + 
Sbjct: 57  RIHRLMRLLVAFEIFQG----------DTRDGYANTPTSHLL-RDVEGSFRDMVLFYGEE 105

Query: 129 ILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIH 188
              + W        S  P  F++  G+ F+ Y    P     F  AM +       +   
Sbjct: 106 -FHAAWTPACEALLSGTP-GFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRL 163

Query: 189 KCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA------NL 242
                F G  S VDVGG +G + KAI +A P+      D    +     +L+       +
Sbjct: 164 L---DFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERV 219

Query: 243 KYVGGDMFEAIPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299
             VGGDM + +P   D  +L  I+ D ++   +++L  C+EA+  +   G+V++I+  
Sbjct: 220 SLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGD---GRVVVIERT 274

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  307 bits (788), Expect = e-104
 Identities = 62/308 (20%), Positives = 125/308 (40%), Gaps = 33/308 (10%)

Query: 8   HDTELLEAQAHVWNHIFN-FINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSK 66
            + +LL         +F   I    +K A+EL +   +     P  L  L +     P +
Sbjct: 23  SNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHM--AEGPKDLATLAADTGSVPPR 80

Query: 67  TRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVL 126
                 L+  L                   E+  + LT  +  +   +P         V 
Sbjct: 81  LE---MLLETLRQMRVINL-----------EDGKWSLTEFADYMFSPTPKEPNLHQTPVA 126

Query: 127 DPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVV 186
             +          ++     A     + K    Y     + N +F E   S+A+ A +++
Sbjct: 127 KAMAFLAD----DFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLL 182

Query: 187 IHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA------ 240
           + + K   +G+  ++DVGG  G ++ A+ K FP L+ T  +LP  ++ +  + A      
Sbjct: 183 LEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVAD 240

Query: 241 NLKYVGGDMF-EAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299
            ++ +  D++ E+ P ADAV+   IL+  N++    + KK  +A+ S    G+++I+DM+
Sbjct: 241 RMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSG---GRLLILDMV 297

Query: 300 RENKKGDD 307
            ++ +  +
Sbjct: 298 IDDPENPN 305

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  265 bits (679), Expect = 5e-88
 Identities = 58/299 (19%), Positives = 110/299 (36%), Gaps = 35/299 (11%)

Query: 15  AQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLM 74
           + A  +N +  +  S ++K AVEL++   I       +   L      +    R    L 
Sbjct: 6   SPALFFNTVNAYQRSAAIKAAVELNVFTAI--SQGIESSQSLAQKCQTSERGMR---MLC 60

Query: 75  RILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL-KDSPLSVTPLLQAVLDPILLSP 133
             L+  GF  +           + +GY LT+ S + L + S   V   ++ +L P++ + 
Sbjct: 61  DYLVIIGFMTK-----------QAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNG 109

Query: 134 WLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNV 193
           +  L+        A                E  +   F +AM+       +++       
Sbjct: 110 FNDLTAAVLKGGTAISS-------EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNEN 162

Query: 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA------NLKYVGG 247
                 ++D+  + G    A+A+  PN E    D   V+   + +            + G
Sbjct: 163 KIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAG 222

Query: 248 DMFEAIPP--ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304
             FE       D V+L   LH ++   C ++L+K K A+      GKVI+ D +  + +
Sbjct: 223 SAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVE---GKVIVFDFIPNSDR 278

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  261 bits (668), Expect = 7e-86
 Identities = 51/307 (16%), Positives = 103/307 (33%), Gaps = 36/307 (11%)

Query: 13  LEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYR 72
            EAQ       F  +     +  ++  I  +++   +  TL ++     +     +    
Sbjct: 13  AEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQ---V 69

Query: 73  LMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLS 132
           L+   +  G               EE  YVL  A   LL D       +       +   
Sbjct: 70  LLEASLTIGTILL-----------EEDRYVLAKAGWFLLNDKM---ARVNMEFNHDVNYQ 115

Query: 133 PWLKLSTWFQSDDPAPFDMVHGK--SFWEYAGDEP-KINNFFNEAMASDARLATRVVIHK 189
               L     +  P     V G+  + +E     P ++   +       +  +    +  
Sbjct: 116 GLFHLEEALLNGRPE-GLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEI 174

Query: 190 CKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA------NLK 243
                     L+D+GG TG  A    +    +E T  DLP  +  +    A       + 
Sbjct: 175 VF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIH 232

Query: 244 YVGGDMFEAIPP----ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299
             G ++ +   P     DAV +   L  +++EE + IL +  ++I  +    KV I++ +
Sbjct: 233 GHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKD---SKVYIMETL 289

Query: 300 RENKKGD 306
            + ++ +
Sbjct: 290 WDRQRYE 296

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  258 bits (660), Expect = 7e-85
 Identities = 50/308 (16%), Positives = 105/308 (34%), Gaps = 41/308 (13%)

Query: 8   HDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKT 67
            D   L +   +      +  S  L  AV   + D+        T  ++ ++  +   K 
Sbjct: 17  EDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLT---QTGRTPAEVAASFGMVEGKA 73

Query: 68  RCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN-ASKLLLKDSPLSVTPLLQAVL 126
                L+  L   G   +           E   +  T    + L   S   + P+++   
Sbjct: 74  A---ILLHALAALGLLTK-----------EGDAFRNTALTERYLTTTSADYIGPIVE--H 117

Query: 127 DPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVV 186
             +    W +L    +S+ P  F              + +  + FN+AM   ++    VV
Sbjct: 118 QYLQWDNWPRLGEILRSEKPLAFQ------QESRFAHDTRARDAFNDAMVRLSQPMVDVV 171

Query: 187 IHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA------ 240
                 VF    +++D+ G  GT    + +  P L    +DLP   +     +       
Sbjct: 172 SELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGG 229

Query: 241 NLKYVGGDMFEAIPP----ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296
            +++   ++ +A       AD V+L   LH ++  E  +++      +      G ++I+
Sbjct: 230 RVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPG---GALLIL 286

Query: 297 DMMRENKK 304
            M   + +
Sbjct: 287 TMTMNDDR 294

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 62/395 (15%), Positives = 105/395 (26%), Gaps = 149/395 (37%)

Query: 9   DTELLEAQAHVWNHIF-----NFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTIN 63
           D E  E Q + +  I       F+++   K      + D+     K     + +  + ++
Sbjct: 8   DFETGEHQ-YQYKDILSVFEDAFVDNFDCK-----DVQDMP----KSILSKEEIDHIIMS 57

Query: 64  PSKTRCVYRLMRILIHSG-----------------FFAQQTLNSSRNNNDEEQGYV---- 102
                   RL   L+                    F         R  +   + Y+    
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 103 -LTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVH-----GKS 156
            L N +++    +  +V+           L P+LKL        PA   ++      GK+
Sbjct: 118 RLYNDNQVF---AKYNVS----------RLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 157 --------------------FWEYAG--DEPK-----INNFF-----NEAMASDARLATR 184
                               FW      + P+     +         N    SD     +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 185 VVIHKCKNVFEGL-------NSLV---DVGGATGTVAKAIAKAFPNLEC----------- 223
           + IH  +     L       N L+   +V  A          AF NL C           
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK------AWNAF-NLSCKILLTTRFKQV 277

Query: 224 TDF---------DLPHVVNGLESD-----LANLKYVGGDMFEAIPP-ADAV---VLKWI- 264
           TDF          L H    L  D     L   KY+     + +P          L  I 
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLL--KYLDCRPQD-LPREVLTTNPRRLSIIA 334

Query: 265 --LHD----W------NDEECVKILKKCKEAITSN 287
             + D    W      N ++   I++     +   
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 12/145 (8%)

Query: 154 GKSFWE-YAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAK 212
              +W         +    +     D    +R  I             +D G   G + K
Sbjct: 53  ALEYWRTVPATVSGVLGGMDHVHDVDIE-GSRNFIASLPGHGTS--RALDCGAGIGRITK 109

Query: 213 AIA-KAFPNLECTDFDLPHVVNGLESDLANLK---YVGGDMFEAIPPA---DAVVLKWIL 265
            +  K +   +  +    H++   + +LA +    ++   M  A  P    D +V++W  
Sbjct: 110 NLLTKLYATTDLLEPV-KHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTA 168

Query: 266 HDWNDEECVKILKKCKEAITSNSKI 290
               D + VK  K C++A+T N  I
Sbjct: 169 IYLTDADFVKFFKHCQQALTPNGYI 193

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 11/111 (9%)

Query: 199 SLVDVGGATGTVAKAIAKAFPNLECT--DFDLP--HVVNGLESDLANLKYVGGDMFEAIP 254
            ++D+G  TG ++  + + +P    T  D       +          +KY+  D      
Sbjct: 47  DILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY-SKYD 105

Query: 255 ---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302
                D VV    +H   DE+  ++ K+    +  +   G  I  D++   
Sbjct: 106 FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKES---GIFINADLVHGE 153

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 13/122 (10%)

Query: 195 EGLNSLVDVGGATGTVAKAIA-KAFPNLECTDFDLPHVVNGLESDLA-----NLKYVGGD 248
            G +  +D G   G + K +    F  ++  D      +   ++ L         Y    
Sbjct: 78  TGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT-EDFLVQAKTYLGEEGKRVRNYFCCG 136

Query: 249 MFEAIPPA---DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG 305
           + +  P     D + ++W++    D+   + L++CK ++  N   G ++I D M +    
Sbjct: 137 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN---GIIVIKDNMAQEGVI 193

Query: 306 DD 307
            D
Sbjct: 194 LD 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	100.0
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	100.0
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	100.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	100.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	100.0
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	100.0
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	100.0
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	100.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	100.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	100.0
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	100.0
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	100.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.73
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.67
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.66
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.58
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.58
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.58
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.57
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.57
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.55
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.55
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.54
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.54
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.54
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.54
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.53
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.53
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.53
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.52
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.51
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.51
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.51
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.51
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.51
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.5
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.5
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.5
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.5
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.5
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.49
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.49
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.49
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.49
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.48
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.48
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.48
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.47
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.46
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.46
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.46
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.46
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.46
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.45
3ocj_A	305	Putative exported protein; structural genomics, PS	99.45
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.45
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.45
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.45
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.44
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.43
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.43
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.43
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.43
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.41
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.41
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.41
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.41
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.4
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.4
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.4
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.39
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.39
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.39
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.38
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.38
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.37
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.37
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.36
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.36
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.35
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.34
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.33
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.32
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.31
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.3
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.3
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.3
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.3
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.3
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.3
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.28
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.28
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.28
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.28
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.28
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.27
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.27
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.27
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.26
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.25
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.25
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.24
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.24
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.24
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.24
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.24
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.23
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.23
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.23
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.23
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.23
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.22
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.22
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.22
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.21
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.21
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.21
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.2
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.2
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.2
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.19
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.19
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.19
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.19
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.18
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.17
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.17
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.17
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.17
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.16
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.16
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.16
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.16
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.15
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.15
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.15
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.15
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.15
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.14
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.14
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.14
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.13
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.13
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.13
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.13
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.13
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.12
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.12
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.12
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.12
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.11
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.11
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.11
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.1
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.1
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.1
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.1
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.09
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.09
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.09
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.09
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.09
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.08
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.08
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.08
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.08
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.08
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.07
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.07
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.07
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.06
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.04
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.04
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.04
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.04
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.03
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.02
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.02
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.02
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.01
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.0
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.0
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.0
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.0
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.99
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.99
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.98
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.98
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.98
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.98
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.98
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.98
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.97
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.96
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.96
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.96
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.95
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.95
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.95
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.95
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.94
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.94
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.94
2o07_A	304	Spermidine synthase; structural genomics, structur	98.93
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.93
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.93
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.92
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.91
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.91
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.91
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.91
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.9
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.9
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.9
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.88
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.87
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.86
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.86
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.85
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.84
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.83
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.82
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.79
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.79
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.78
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.75
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.72
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.7
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.7
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.69
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.67
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.66
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.63
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.6
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.58
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.58
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.57
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.53
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.53
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.5
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.49
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.48
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.47
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.46
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.45
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.42
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.42
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.41
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.41
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.41
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.39
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.39
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.38
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.37
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.37
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.32
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.32
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.27
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.25
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.22
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.14
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.13
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.12
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.07
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.04
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.04
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	98.01
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.99
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.96
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.95
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.87
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.87
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.81
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.78
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.71
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.67
3khk_A	544	Type I restriction-modification system methylation	97.62
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.57
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.57
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.55
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.53
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.51
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.4
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.38
3lkd_A	542	Type I restriction-modification system methyltrans	97.35
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.34
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.27
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.25
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	97.14
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	97.11
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.0
1y0u_A	96	Arsenical resistance operon repressor, putative; s	96.97
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.93
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	96.87
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.84
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.76
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	96.72
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	96.71
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	96.61
3jth_A	98	Transcription activator HLYU; transcription factor	96.58
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	96.53
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	96.48
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	96.4
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	96.38
3df8_A	111	Possible HXLR family transcriptional factor; APC89	96.3
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.29
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	96.27
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	96.27
2xrn_A	241	HTH-type transcriptional regulator TTGV; DNA-bindi	96.17
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	96.15
1mkm_A	249	ICLR transcriptional regulator; structural genomic	96.09
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	96.08
2g7u_A	257	Transcriptional regulator; ICLR family, structural	96.08
3bdd_A	142	Regulatory protein MARR; putative multiple antibio	96.07
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.06
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	96.05
1ub9_A	100	Hypothetical protein PH1061; helix-turn-helix moti	96.03
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	96.02
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	96.02
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	96.01
2kko_A	108	Possible transcriptional regulatory protein (possi	95.95
3ufb_A	530	Type I restriction-modification system methyltran	95.94
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	95.94
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	95.94
1on2_A	142	Transcriptional regulator MNTR; helix-turn-helix,	95.92
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	95.91
2ia2_A	265	Putative transcriptional regulator; SAD, PSI-2, st	95.84
3fm5_A	150	Transcriptional regulator; MCSG, PF04017, PSI, MAR	95.84
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	95.81
2y75_A	129	HTH-type transcriptional regulator CYMR; DNA bindi	95.81
1yyv_A	131	Putative transcriptional regulator; reductive meth	95.78
2wte_A	244	CSA3; antiviral protein, viral resistance, winged	95.75
2obp_A	96	Putative DNA-binding protein; structural genomics,	95.74
2qww_A	154	Transcriptional regulator, MARR family; YP_013417.	95.74
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.69
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	95.67
3k0l_A	162	Repressor protein; helix-turn-helix, structural ge	95.67
2gxg_A	146	146AA long hypothetical transcriptional regulator;	95.66
1tbx_A	99	ORF F-93, hypothetical 11.0 kDa protein; sulfolobu	95.55
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	95.53
4a5n_A	131	Uncharacterized HTH-type transcriptional regulato;	95.53
1s3j_A	155	YUSO protein; structural genomics, MARR transcript	95.51
3lwf_A	159	LIN1550 protein, putative transcriptional regulato	95.49
3kp7_A	151	Transcriptional regulator TCAR; multiple drug resi	95.4
2nyx_A	168	Probable transcriptional regulatory protein, RV14;	95.37
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	95.35
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	95.29
2f2e_A	146	PA1607; transcription factor, helix-TRUN-helix, AP	95.26
1z7u_A	112	Hypothetical protein EF0647; winged-helix-turn-hel	95.16
1ylf_A	149	RRF2 family protein; structural genomics, transcri	95.16
3t8r_A	143	Staphylococcus aureus CYMR; transcriptional regula	95.15
3k69_A	162	Putative transcription regulator; putative transcr	95.14
2qvo_A	95	Uncharacterized protein AF_1382; PSI, structural g	95.11
3oop_A	143	LIN2960 protein; protein structure initiative, PSI	95.1
3boq_A	160	Transcriptional regulator, MARR family; MARR famil	95.07
3bja_A	139	Transcriptional regulator, MARR family, putative;	95.06
2nnn_A	140	Probable transcriptional regulator; structural gen	95.05
4aik_A	151	Transcriptional regulator SLYA; transcription, tra	95.04
3bro_A	141	Transcriptional regulator; helix_TURN_helix, multi	95.03
3eco_A	139	MEPR; mutlidrug efflux pump regulator winged helix	95.03
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	95.01
3hsr_A	140	HTH-type transcriptional regulator SARZ; helix-tur	95.0
2x4h_A	139	Hypothetical protein SSO2273; transcription; 2.30A	95.0
3nrv_A	148	Putative transcriptional regulator (MARR/EMRR FAM;	94.97
2fsw_A	107	PG_0823 protein; alpha-beta structure, helix-turn-	94.97
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.95
3deu_A	166	Transcriptional regulator SLYA; MARR, WING-helix,	94.92
2fa5_A	162	Transcriptional regulator MARR/EMRR family; multip	94.9
3bpv_A	138	Transcriptional regulator; MARR, DNA binding, tran	94.87
3bj6_A	152	Transcriptional regulator, MARR family; helix-turn	94.87
2fbh_A	146	Transcriptional regulator PA3341; MARR, transcript	94.85
2pg4_A	95	Uncharacterized protein; structural genomics, join	94.81
3u1d_A	151	Uncharacterized protein; GNTR-superfamily, structu	94.78
3f3x_A	144	Transcriptional regulator, MARR family, putative;	94.77
3hrs_A	214	Metalloregulator SCAR; DTXR/MNTR family member, tr	94.75
1bja_A	95	Transcription regulatory protein MOTA; activation	94.71
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	94.7
1jgs_A	138	Multiple antibiotic resistance protein MARR; trans	94.7
1lj9_A	144	Transcriptional regulator SLYA; HTH DNA binding pr	94.66
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	94.65
3e6m_A	161	MARR family transcriptional regulator; APC88769, s	94.59
2a61_A	145	Transcriptional regulator TM0710; APC4350, MCSG, m	94.57
2hr3_A	147	Probable transcriptional regulator; MCSG, structur	94.57
1xd7_A	145	YWNA; structural genomics, protein structure initi	94.52
4hbl_A	149	Transcriptional regulator, MARR family; HTH, trans	94.5
3cdh_A	155	Transcriptional regulator, MARR family; helix-turn	94.5
4g6q_A	182	Putative uncharacterized protein; structural genom	94.46
3u2r_A	168	Regulatory protein MARR; structural genomics, PSI-	94.43
2eth_A	154	Transcriptional regulator, putative, MAR family; M	94.42
3s2w_A	159	Transcriptional regulator, MARR family; structural	94.38
2rdp_A	150	Putative transcriptional regulator MARR; PFAM PF01	94.37
3cjn_A	162	Transcriptional regulator, MARR family; silicibact	94.36
1z91_A	147	Organic hydroperoxide resistance transcriptional;	94.31
2h09_A	155	Transcriptional regulator MNTR; transcription regu	94.29
3r0a_A	123	Putative transcriptional regulator; structural gen	94.28
2lnb_A	80	Z-DNA-binding protein 1; structural genomics, nort	94.23
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.2
2bv6_A	142	MGRA, HTH-type transcriptional regulator MGRA; mul	94.15
2pex_A	153	Transcriptional regulator OHRR; transcription regu	94.12
2lkp_A	119	Transcriptional regulator, ARSR family; symmetric	93.92
3tgn_A	146	ADC operon repressor ADCR; helix-turn-helix, trans	93.74
2p4w_A	202	Transcriptional regulatory protein ARSR family; ar	93.66
2zkz_A	99	Transcriptional repressor PAGR; protein-DNA, HTH m	93.62
3nqo_A	189	MARR-family transcriptional regulator; structural	93.52
3jw4_A	148	Transcriptional regulator, MARR/EMRR family; DNA-b	93.5
4b8x_A	147	SCO5413, possible MARR-transcriptional regulator;	93.48
2frh_A	127	SARA, staphylococcal accessory regulator A; winged	93.43
2fbi_A	142	Probable transcriptional regulator; MARR, APC5816,	93.43
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	93.26
2fbk_A	181	Transcriptional regulator, MARR family; winged-hel	93.05
2qlz_A	232	Transcription factor PF0095; 2.50A {Pyrococcus fur	93.0
1sfx_A	109	Conserved hypothetical protein AF2008; structural	92.82
4fx0_A	148	Probable transcriptional repressor protein; helix-	92.35
2oo3_A	283	Protein involved in catabolism of external DNA; st	92.31
1q1h_A	110	TFE, transcription factor E, TFE; TFIIE, transcrip	92.26
2fxa_A	207	Protease production regulatory protein HPR; protea	92.23
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	92.11
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	91.89
1okr_A	123	MECI, methicillin resistance regulatory protein ME	91.82
1sfu_A	75	34L protein; protein/Z-DNA complex, DNA binding pr	91.78
2o03_A	131	Probable zinc uptake regulation protein FURB; DNA-	91.64
1p6r_A	82	Penicillinase repressor; transcription regulation,	91.57
1uly_A	192	Hypothetical protein PH1932; helix-turn-helix, str	91.24
2k4b_A	99	Transcriptional regulator; DNA binding protein, wi	91.15
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	91.14
2vn2_A	128	DNAD, chromosome replication initiation protein; D	91.06
2d1h_A	109	ST1889, 109AA long hypothetical transcriptional re	91.01
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	90.97
2w25_A	150	Probable transcriptional regulatory protein; trans	90.81
2cfx_A	144	HTH-type transcriptional regulator LRPC; transcrip	90.81
2pn6_A	150	ST1022, 150AA long hypothetical transcriptional re	90.8
1p4x_A	250	Staphylococcal accessory regulator A homologue; wi	90.76
1v4r_A	102	Transcriptional repressor; helix-turn-helix, winge	90.73
1ku9_A	152	Hypothetical protein MJ223; putative transcription	90.42
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	90.26
2p5v_A	162	Transcriptional regulator, LRP/ASNC family; NMB057	90.25
1mzb_A	136	Ferric uptake regulation protein; ferric uptake re	90.11
3i71_A	68	Ethanolamine utilization protein EUTK; helix-turn-	89.95
2qq9_A	226	Diphtheria toxin repressor; regulator, DTXR, helix	89.67
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	89.65
2xvc_A	59	ESCRT-III, SSO0910; cell cycle, cell division, cyt	89.63
3cta_A	230	Riboflavin kinase; structural genomics, transferas	89.53
3mwm_A	139	ZUR, putative metal uptake regulation protein; FUR	89.44
2cg4_A	152	Regulatory protein ASNC; DNA binding, FFRP, LRP fa	89.44
2esh_A	118	Conserved hypothetical protein TM0937; APC5794, st	89.41
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	89.4
1fx7_A	230	Iron-dependent repressor IDER; DTXR, iron-dependen	89.34
2dbb_A	151	Putative HTH-type transcriptional regulator PH006;	89.2
2ia0_A	171	Putative HTH-type transcriptional regulator PF086;	88.83
2cyy_A	151	Putative HTH-type transcriptional regulator PH151;	88.82
3i4p_A	162	Transcriptional regulator, ASNC family; PSI, struc	88.69
1j5y_A	187	Transcriptional regulator, biotin repressor famil;	88.65
2p8t_A	200	Hypothetical protein PH0730; pyrococcus horikoshii	88.64
2xig_A	150	Ferric uptake regulation protein; hpfur, transcrip	88.36
2e1c_A	171	Putative HTH-type transcriptional regulator PH151;	87.87
1i1g_A	141	Transcriptional regulator LRPA; helix-turn-helix,	87.77
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	87.33
2g9w_A	138	Conserved hypothetical protein; DNA-binding domain	87.17
2v79_A	135	DNA replication protein DNAD; primosome, DNA-bindi	87.0
3ke2_A	117	Uncharacterized protein YP_928783.1; structural ge	86.64
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	86.46
3elk_A	117	Putative transcriptional regulator TA0346; structu	85.72
1p4x_A	250	Staphylococcal accessory regulator A homologue; wi	85.51
2o0m_A	345	Transcriptional regulator, SORC family; structural	85.24
4esf_A	117	PADR-like transcriptional regulator; PADR family,	85.15
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	84.46
2pjp_A	121	Selenocysteine-specific elongation factor; SELB, p	84.32
1sd4_A	126	Penicillinase repressor; BLAI, MECI, methicillin,	84.27
2b0l_A	102	GTP-sensing transcriptional pleiotropic repressor;	83.89
2qlz_A	232	Transcription factor PF0095; 2.50A {Pyrococcus fur	83.85
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	83.8
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	83.57
1hsj_A	487	Fusion protein consisting of staphylococcus access	82.74
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	82.7
1yg2_A	179	Gene activator APHA; virulence factor, winged heli	82.3
2w57_A	150	Ferric uptake regulation protein; gene regulation,	82.08
3f8b_A	116	Transcriptional regulator, PADR-like family; winge	82.01
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	81.7
3l7w_A	108	Putative uncharacterized protein SMU.1704; PADR, t	81.66
3tqn_A	113	Transcriptional regulator, GNTR family; regulatory	81.36
2dk5_A	91	DNA-directed RNA polymerase III 39 kDa polypeptide	81.3
1xma_A	145	Predicted transcriptional regulator; southea colla	81.27
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	81.17
1bia_A	321	BIRA bifunctional protein; transcription regulatio	80.45
3maj_A	382	DNA processing chain A; MCSG, PSI-2, structural ge	80.38

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=3.3e-48  Score=357.14  Aligned_cols=275  Identities=20%  Similarity=0.322  Sum_probs=246.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCC
Q 037127           14 EAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRN   93 (307)
Q Consensus        14 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~   93 (307)
                      ++...|++++.||+.+++|++|++|||||.|.+.++|+|++|||+++|+   +++.++|+|++|++.|+|++...     
T Consensus         7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~~-----   78 (353)
T 4a6d_A            7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKVETR-----   78 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEEecc-----
Confidence            5566789999999999999999999999999875579999999999999   78999999999999999987643     


Q ss_pred             CCCCCCeeecChhcc-hhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcC---CCccccccCCcHHHH
Q 037127           94 NNDEEQGYVLTNASK-LLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHG---KSFWEYAGDEPKINN  169 (307)
Q Consensus        94 ~~~~~~~y~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g---~~~~~~~~~~~~~~~  169 (307)
                        ++.++|++|+.++ ++.++++.++..++.+.. +..+..|..|++++++++ ++|...+|   .++|+++.++++...
T Consensus        79 --~~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~  154 (353)
T 4a6d_A           79 --GGKAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERL  154 (353)
T ss_dssp             --TTEEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHH
T ss_pred             --CccceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHH
Confidence              2246899999998 566777888998887763 456889999999999998 57888877   467899999999999


Q ss_pred             HHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh-----cCCCeEE
Q 037127          170 FFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES-----DLANLKY  244 (307)
Q Consensus       170 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-----~~~rv~~  244 (307)
                      .|.++|...+....+.+++.++  +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++     ..+||+|
T Consensus       155 ~f~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~  232 (353)
T 4a6d_A          155 QFMQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDF  232 (353)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceee
Confidence            9999999988888888999998  78888999999999999999999999999999999999999886     4689999


Q ss_pred             EecCCCCC-CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127          245 VGGDMFEA-IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG  305 (307)
Q Consensus       245 ~~~d~~~~-~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~  305 (307)
                      +.+|++++ .|++|+|+++++||+|+|+++.++|++++++|+|   ||+++|+|.++++++.
T Consensus       233 ~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~  291 (353)
T 4a6d_A          233 QEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRR  291 (353)
T ss_dssp             EESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSC
T ss_pred             ecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCC
Confidence            99999984 6679999999999999999999999999999999   9999999999988754

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=6.3e-46  Score=343.30  Aligned_cols=289  Identities=30%  Similarity=0.558  Sum_probs=252.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCC-CCCCHHHHHHHcCC--CCCCcccHHHHHHHHHhCCceee
Q 037127            9 DTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHG-KPTTLNDLVSALTI--NPSKTRCVYRLMRILIHSGFFAQ   85 (307)
Q Consensus         9 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~-~~~t~~eLA~~~g~--~~~~~~~l~r~L~~L~~~g~l~~   85 (307)
                      ..+..++...+++++++++.+++|++|+++|||++|...| +|+|++|||+++|+  +|.++..|+||||+|++.|+|++
T Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~   93 (364)
T 3p9c_A           14 ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTC   93 (364)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEE
Confidence            5667888999999999999999999999999999999754 69999999999997  53223399999999999999998


Q ss_pred             eccCCCCCCCCCCCeeecChhcchhhcCC-CCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCC
Q 037127           86 QTLNSSRNNNDEEQGYVLTNASKLLLKDS-PLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDE  164 (307)
Q Consensus        86 ~~~~~~~~~~~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~  164 (307)
                      .....  ..+..+++|++|+.++.|+++. +.++.+++.+..++.++..|.+|+++++++. ++|+..+|.++|+|+..+
T Consensus        94 ~~~~~--~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~  170 (364)
T 3p9c_A           94 LVEEG--KDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTD  170 (364)
T ss_dssp             EEEEC--SSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTC
T ss_pred             ecccc--CCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhC
Confidence            73100  0000136899999999887654 5689998887767778899999999999987 799999999999999999


Q ss_pred             cHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEE
Q 037127          165 PKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKY  244 (307)
Q Consensus       165 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~  244 (307)
                      ++..+.|.++|...+....+.+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.++ ..+||+|
T Consensus       171 ~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~~  248 (364)
T 3p9c_A          171 PRFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAP-QFPGVTH  248 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEE
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhh-hcCCeEE
Confidence            999999999999888777777888776 25677899999999999999999999999999999999999888 5589999


Q ss_pred             EecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127          245 VGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG  305 (307)
Q Consensus       245 ~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~  305 (307)
                      +.+|+++++|..|+|+++++||+|+++++.++|++++++|+|   ||+++|+|.+.++..+
T Consensus       249 ~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~  306 (364)
T 3p9c_A          249 VGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPE  306 (364)
T ss_dssp             EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCC
T ss_pred             EeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCC
Confidence            999999988867999999999999999999999999999999   9999999999987654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=100.00  E-value=5.4e-45  Score=335.19  Aligned_cols=274  Identities=22%  Similarity=0.415  Sum_probs=248.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccC
Q 037127           10 TELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLN   89 (307)
Q Consensus        10 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~   89 (307)
                      -...++...+++++.|++.+++|++|+++|||++|.+  +|+|++|||+++|+   +++.++|||++|++.|+|++ .  
T Consensus        17 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l~~-~--   88 (348)
T 3lst_A           17 MDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVVRE-S--   88 (348)
T ss_dssp             CCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE-E--
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEe-c--
Confidence            3456788999999999999999999999999999985  79999999999999   68999999999999999999 4  


Q ss_pred             CCCCCCCCCCeeecChhcchhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHH
Q 037127           90 SSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINN  169 (307)
Q Consensus        90 ~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~  169 (307)
                              +++|++|+.++.++++++.++.+++.+..++.++..|.+|+++++++. ++|+..+|.++|+|+.++++..+
T Consensus        89 --------~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~  159 (348)
T 3lst_A           89 --------DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEA  159 (348)
T ss_dssp             --------TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHH
T ss_pred             --------CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHH
Confidence                    589999999998888877789988877666657899999999999987 67988999999999999999999


Q ss_pred             HHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh----cCCCeEEE
Q 037127          170 FFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES----DLANLKYV  245 (307)
Q Consensus       170 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~~~rv~~~  245 (307)
                      .|.++|...+....+.+++.++  +++..+|||||||+|.++..+++++|+++++++|+|.++...+.    ..+||+|+
T Consensus       160 ~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~  237 (348)
T 3lst_A          160 LYYEGMETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVV  237 (348)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEE
T ss_pred             HHHHHHHHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEE
Confidence            9999999988887888888888  77889999999999999999999999999999999888773221    46789999


Q ss_pred             ecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127          246 GGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG  305 (307)
Q Consensus       246 ~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~  305 (307)
                      .+|+++++|.||+|+++++||+|+++++.++|++++++|+|   ||+++|+|.+.++...
T Consensus       238 ~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~  294 (348)
T 3lst_A          238 EGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGND  294 (348)
T ss_dssp             ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSS
T ss_pred             ecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCC
Confidence            99999877899999999999999999999999999999999   9999999999887643

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=100.00  E-value=2.6e-45  Score=337.80  Aligned_cols=292  Identities=50%  Similarity=0.885  Sum_probs=254.7

Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 037127            2 NLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSG   81 (307)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g   81 (307)
                      |+|+....+++.++...+++++.+++.+++|++++++|||+.|...++|.|++|||+++|++|.+++.++|||++|++.|
T Consensus         3 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~g   82 (352)
T 1fp2_A            3 SSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNG   82 (352)
T ss_dssp             -----CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTT
T ss_pred             ccccCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCC
Confidence            89999999999999999999999999999999999999999998744599999999999996545789999999999999


Q ss_pred             ceeeeccCCCCCCCCCCCeeecChhcchhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhh-cCCCChhhhhcCCCcccc
Q 037127           82 FFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQ-SDDPAPFDMVHGKSFWEY  160 (307)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~f~~~~g~~~~~~  160 (307)
                      +|++.+        +++++|++|+.++.|+++++.++.+++.+..++.++..|.+|+++++ ++. ++|+..+|.++|++
T Consensus        83 ll~~~~--------~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~  153 (352)
T 1fp2_A           83 FFEIIT--------KEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDF  153 (352)
T ss_dssp             SEEEEE--------SSSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHH
T ss_pred             eEEEec--------CCCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHH
Confidence            999872        01489999999999988887789999888766667889999999999 665 78998899999999


Q ss_pred             ccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCC
Q 037127          161 AGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA  240 (307)
Q Consensus       161 ~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~  240 (307)
                      +.++++..+.|..+|...+....+. +..+++.+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+
T Consensus       154 ~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~  231 (352)
T 1fp2_A          154 LDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG-SN  231 (352)
T ss_dssp             HHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-BT
T ss_pred             HHhChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc-CC
Confidence            9999999999999999887766566 777722267788999999999999999999999999999999999998884 35


Q ss_pred             CeEEEecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127          241 NLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       241 rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~  304 (307)
                      +|+|+.+|+++++|.||+|+++++||+|+++++.++|++++++|+|.++||+++|+|.+.++..
T Consensus       232 ~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~  295 (352)
T 1fp2_A          232 NLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKK  295 (352)
T ss_dssp             TEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTT
T ss_pred             CcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCC
Confidence            6999999999888889999999999999999999999999999996222799999999988754

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=100.00  E-value=9.2e-45  Score=336.03  Aligned_cols=287  Identities=31%  Similarity=0.598  Sum_probs=249.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccC---CCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceee
Q 037127           10 TELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKH---GKPTTLNDLVSALT-INPSKTRCVYRLMRILIHSGFFAQ   85 (307)
Q Consensus        10 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~---~~~~t~~eLA~~~g-~~~~~~~~l~r~L~~L~~~g~l~~   85 (307)
                      .+..++...+++++.|++.+++|++|+++|||+.|...   ++|+|++|||+++| .+|.+++.|+||||+|++.|+|++
T Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~   95 (368)
T 3reo_A           16 SSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTY   95 (368)
T ss_dssp             -CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEE
Confidence            35677889999999999999999999999999999873   35799999999998 443234599999999999999998


Q ss_pred             eccCCCCCCCCC-CCeeecChhcchhhcC-CCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccC
Q 037127           86 QTLNSSRNNNDE-EQGYVLTNASKLLLKD-SPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGD  163 (307)
Q Consensus        86 ~~~~~~~~~~~~-~~~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~  163 (307)
                      .....   .++. +++|++|+.++.|+.+ ++.++.+++.+..++.++..|.+|+++++++. ++|+..+|.++|+|+..
T Consensus        96 ~~~~~---~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~  171 (368)
T 3reo_A           96 TLREL---PSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGT  171 (368)
T ss_dssp             EEEEC---TTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTT
T ss_pred             ecccC---CCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhh
Confidence            62100   0000 2689999999988765 46789999887767778899999999999987 79999999999999999


Q ss_pred             CcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeE
Q 037127          164 EPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLK  243 (307)
Q Consensus       164 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~  243 (307)
                      +++..+.|.++|...+....+.+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.++ ..++|+
T Consensus       172 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~  249 (368)
T 3reo_A          172 DHRINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAP-AFSGVE  249 (368)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEE
T ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhh-hcCCCE
Confidence            9999999999999888777777888776 25677899999999999999999999999999999999998888 557999


Q ss_pred             EEecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127          244 YVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG  305 (307)
Q Consensus       244 ~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~  305 (307)
                      |+.+|+++++|..|+|+++++||+|+++++.++|++++++|+|   ||+++|+|.+.++...
T Consensus       250 ~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~  308 (368)
T 3reo_A          250 HLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPD  308 (368)
T ss_dssp             EEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCC
T ss_pred             EEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCC
Confidence            9999999988867999999999999999999999999999999   9999999999987654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=100.00  E-value=4.5e-44  Score=331.57  Aligned_cols=274  Identities=27%  Similarity=0.501  Sum_probs=249.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccC
Q 037127           10 TELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLN   89 (307)
Q Consensus        10 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~   89 (307)
                      ..-.+...++++++.+++.+++|++|+++|||+.|..  +|+|++|||+++|+   +++.++|||++|++.|+|++.+  
T Consensus        33 ~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~--  105 (369)
T 3gwz_A           33 AARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG--  105 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS--
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC--
Confidence            3344667889999999999999999999999999985  79999999999999   6899999999999999999975  


Q ss_pred             CCCCCCCCCCe-eecChhcchhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHH
Q 037127           90 SSRNNNDEEQG-YVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKIN  168 (307)
Q Consensus        90 ~~~~~~~~~~~-y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~  168 (307)
                              +++ |++|+.++.|.++++.++..++.+..++..+..|.+|+++++++. ++|...+|.++|+|+.++++..
T Consensus       106 --------~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~  176 (369)
T 3gwz_A          106 --------HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKAR  176 (369)
T ss_dssp             --------STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHH
T ss_pred             --------CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHH
Confidence                    578 999999999888777788888887766556789999999999997 6788889989999999999999


Q ss_pred             HHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCe
Q 037127          169 NFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANL  242 (307)
Q Consensus       169 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv  242 (307)
                      +.|.++|...+....+.+++.++  +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++      ..+||
T Consensus       177 ~~f~~~m~~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v  254 (369)
T 3gwz_A          177 ELFNRAMGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRC  254 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTE
T ss_pred             HHHHHHHHHHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCce
Confidence            99999999888777788888887  67789999999999999999999999999999999999998886      36899


Q ss_pred             EEEecCCCCCCC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127          243 KYVGGDMFEAIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       243 ~~~~~d~~~~~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~  304 (307)
                      +|+.+|+++++| .||+|+++++||+|+++++.++|++++++|+|   ||+++|+|.+.++..
T Consensus       255 ~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~  314 (369)
T 3gwz_A          255 EILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERP  314 (369)
T ss_dssp             EEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSC
T ss_pred             EEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCC
Confidence            999999998888 69999999999999999999999999999999   999999999998764

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=100.00  E-value=4.9e-44  Score=329.98  Aligned_cols=295  Identities=46%  Similarity=0.856  Sum_probs=252.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127            8 HDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus         8 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +.+++.++...+++++.+++.+++|++|+++|||++|+..|+|.|++|||+++|++|.+++.++|||++|++.|+|++..
T Consensus         3 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~   82 (358)
T 1zg3_A            3 EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTI   82 (358)
T ss_dssp             TTSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEE
T ss_pred             chHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEec
Confidence            34678889999999999999999999999999999998744599999999999997656889999999999999999871


Q ss_pred             cCCCCCCCCCCCeeecChhcchhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCC-CChhhhhcCCCccccccCCcH
Q 037127           88 LNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDD-PAPFDMVHGKSFWEYAGDEPK  166 (307)
Q Consensus        88 ~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~f~~~~g~~~~~~~~~~~~  166 (307)
                      .......+..+++|++|+.++.|+++++.++.+++.+..++.++..|..|+++++++. .++|+..+|.++|+++.++|+
T Consensus        83 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~  162 (358)
T 1zg3_A           83 VKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSE  162 (358)
T ss_dssp             ECCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGG
T ss_pred             ccccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChh
Confidence            0000000000379999999999988887789999888766677899999999999984 378998899999999999999


Q ss_pred             HHH--HHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEE
Q 037127          167 INN--FFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKY  244 (307)
Q Consensus       167 ~~~--~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~  244 (307)
                      ..+  .|..+|...+.... .+++.+++.+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .++|++
T Consensus       163 ~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~  240 (358)
T 1zg3_A          163 SSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-NENLNF  240 (358)
T ss_dssp             HHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC-CSSEEE
T ss_pred             hhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc-CCCcEE
Confidence            999  99999998776655 67777732266778999999999999999999999999999999999988874 456999


Q ss_pred             EecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127          245 VGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       245 ~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~  304 (307)
                      +.+|+++++|.+|+|+++++||+|+++++.++|++++++|+|.++||+++|+|.+.+++.
T Consensus       241 ~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~  300 (358)
T 1zg3_A          241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS  300 (358)
T ss_dssp             EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTC
T ss_pred             EeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCC
Confidence            999999988889999999999999999999999999999996111799999999988754

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=100.00  E-value=4.9e-44  Score=326.65  Aligned_cols=266  Identities=25%  Similarity=0.394  Sum_probs=237.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCC
Q 037127           17 AHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNND   96 (307)
Q Consensus        17 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~   96 (307)
                      ..+++++.|++.+++|++|+++|||++|..  +|.|++|||+++|+   +++.++|||++|++.|+|++.+         
T Consensus         7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~---------   72 (332)
T 3i53_A            7 HIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG---------   72 (332)
T ss_dssp             SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT---------
T ss_pred             HHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC---------
Confidence            457889999999999999999999999985  79999999999999   6899999999999999999875         


Q ss_pred             CCCeeecChhcchhhcCCCCChHHHHHHhcCcchh-hhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHH
Q 037127           97 EEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILL-SPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAM  175 (307)
Q Consensus        97 ~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m  175 (307)
                       +++|++|+.++.+.++++.++..++.+......+ ..|.+|+++++++. ++|+..+|.++|+++.++++..+.|..+|
T Consensus        73 -~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m  150 (332)
T 3i53_A           73 -QGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLM  150 (332)
T ss_dssp             -TSBEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred             -CCeEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHH
Confidence             5899999999988877777888887665433345 78999999999997 67988899899999999999999999999


Q ss_pred             HhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCC
Q 037127          176 ASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDM  249 (307)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~  249 (307)
                      ...+....+.+++.++  +.+..+|||||||+|.++..+++.+|+++++++|+|.+++.+++      ..+||+|+.+|+
T Consensus       151 ~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~  228 (332)
T 3i53_A          151 SHHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSF  228 (332)
T ss_dssp             HHHHHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             HHhHHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCC
Confidence            9887666666777776  56678999999999999999999999999999999999998876      358999999999


Q ss_pred             CCCCC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          250 FEAIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       250 ~~~~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      ++++| .||+|+++++||+|+++++.++|++++++|+|   ||+++|+|.+.++.
T Consensus       229 ~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~  280 (332)
T 3i53_A          229 FDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE  280 (332)
T ss_dssp             TSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC--
T ss_pred             CCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC
Confidence            98888 79999999999999999999999999999999   99999999988765

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=100.00  E-value=3.8e-43  Score=325.65  Aligned_cols=287  Identities=29%  Similarity=0.532  Sum_probs=236.8

Q ss_pred             chhhHHHHHHHH--HHHHHHHHHHHHHHHHhCCcccccccCCCC---CCHHHHHHHcCC---CCCCcccHHHHHHHHHhC
Q 037127            9 DTELLEAQAHVW--NHIFNFINSMSLKCAVELSIPDIINKHGKP---TTLNDLVSALTI---NPSKTRCVYRLMRILIHS   80 (307)
Q Consensus         9 ~~~~~~~~~~l~--~~~~g~~~~~~L~~a~~lglfd~L~~~~~~---~t~~eLA~~~g~---~~~~~~~l~r~L~~L~~~   80 (307)
                      .++..+++..++  +++.+++.+++|++|+++|||+.|+..|+|   +|++|||+++|+   +|.+++.++|||++|++.
T Consensus        16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~   95 (372)
T 1fp1_D           16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY   95 (372)
T ss_dssp             ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHT
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhC
Confidence            556778888999  999999999999999999999999964226   999999999999   655679999999999999


Q ss_pred             CceeeeccCCCCCCCCC--CCeeecChhcchhhcCCC-CChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCc
Q 037127           81 GFFAQQTLNSSRNNNDE--EQGYVLTNASKLLLKDSP-LSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSF  157 (307)
Q Consensus        81 g~l~~~~~~~~~~~~~~--~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~  157 (307)
                      |+|++....    +.++  +++|++|+.++.|+++++ .++.+++.+..++.++..|.+|+++++++..++|+..+|.++
T Consensus        96 gll~~~~~~----~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~  171 (372)
T 1fp1_D           96 SVLTSTTRT----IEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTK  171 (372)
T ss_dssp             TSEEEEEEE----CTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC------------
T ss_pred             CceEecccc----cCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCH
Confidence            999987100    0001  269999999998888876 688888888766667889999999999983378988889999


Q ss_pred             cccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh
Q 037127          158 WEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES  237 (307)
Q Consensus       158 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~  237 (307)
                      |+++.++++..+.|.++|...+....+.+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus       172 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~  250 (372)
T 1fp1_D          172 YEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP  250 (372)
T ss_dssp             --CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC
T ss_pred             HHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh
Confidence            9999999999999999999887777777888775 256778999999999999999999999999999999999988884


Q ss_pred             cCCCeEEEecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127          238 DLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       238 ~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~  304 (307)
                       .++|+++.+|+++++|.+|+|+++++||+|+++++.++|++++++|+|   ||+++|.|.+.++..
T Consensus       251 -~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~  313 (372)
T 1fp1_D          251 -LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEP  313 (372)
T ss_dssp             -CTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSC
T ss_pred             -cCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCC
Confidence             467999999999988889999999999999999999999999999999   999999999988764

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.6e-42  Score=316.74  Aligned_cols=266  Identities=25%  Similarity=0.394  Sum_probs=241.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCC
Q 037127           14 EAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRN   93 (307)
Q Consensus        14 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~   93 (307)
                      ++...+++++.|++.+++|++++++|||+.|..  +|.|++|||+++|+   +++.++|+|++|++.|+|++.+      
T Consensus         7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~------   75 (334)
T 2ip2_A            7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT------   75 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC------
Confidence            567889999999999999999999999999975  79999999999999   7899999999999999999875      


Q ss_pred             CCCCCCeeecChhcchhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHH
Q 037127           94 NNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNE  173 (307)
Q Consensus        94 ~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~  173 (307)
                          +++|++|+.++.|. +++.++.+++.+..++.+ ..|.+|+++++++. ++|+..+|.++|+++.++++..+.|.+
T Consensus        76 ----~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~  148 (334)
T 2ip2_A           76 ----RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLL  148 (334)
T ss_dssp             ----TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred             ----CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHH
Confidence                58999999999888 777788998887765444 88999999999987 689888899999999999999999999


Q ss_pred             HHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEec
Q 037127          174 AMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGG  247 (307)
Q Consensus       174 ~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~  247 (307)
                      +| ..+....+.+++.++  +.+ .+|||||||+|.++..+++.+|+.+++++|+|.+++.+++      ..+||+++.+
T Consensus       149 ~m-~~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~  224 (334)
T 2ip2_A          149 AM-KASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGG  224 (334)
T ss_dssp             HH-GGGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEES
T ss_pred             HH-HHHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecC
Confidence            99 877777788888887  566 8999999999999999999999999999999888888775      3579999999


Q ss_pred             CCCCCCCC-ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127          248 DMFEAIPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       248 d~~~~~p~-~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~  304 (307)
                      |+++++|. ||+|++++++|+|+++++.++|++++++|+|   ||+++|.|.+.+++.
T Consensus       225 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~  279 (334)
T 2ip2_A          225 DMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASE  279 (334)
T ss_dssp             CTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSS
T ss_pred             CCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCC
Confidence            99997774 9999999999999999999999999999999   999999999987654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=100.00  E-value=3.8e-42  Score=317.92  Aligned_cols=271  Identities=18%  Similarity=0.234  Sum_probs=230.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127            8 HDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus         8 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .+.++.++...+++++.|++.+++|++++++|||+.|+..++|+|++|||+++|+   +++.++|||++|++.|+|+++ 
T Consensus         8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~g~l~~~-   83 (363)
T 3dp7_A            8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTIGTILLE-   83 (363)
T ss_dssp             SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEE-
T ss_pred             CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCeEec-
Confidence            4567889999999999999999999999999999999974579999999999999   789999999999999999886 


Q ss_pred             cCCCCCCCCCCCeeecChhcchhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcC--CCccccccCCc
Q 037127           88 LNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHG--KSFWEYAGDEP  165 (307)
Q Consensus        88 ~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g--~~~~~~~~~~~  165 (307)
                                +++|++|+.++.|+++++  ...++.+. .+..++.|.+|+++++++. .++...+|  .++|+++.+++
T Consensus        84 ----------~~~y~~t~~s~~L~~~~~--~~~~~~~~-~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~  149 (363)
T 3dp7_A           84 ----------EDRYVLAKAGWFLLNDKM--ARVNMEFN-HDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLP  149 (363)
T ss_dssp             ----------TTEEEECHHHHHHHHCHH--HHHHHHHH-HHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSC
T ss_pred             ----------CCEEecccchHHhhCCCc--ccchheee-cHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCH
Confidence                      489999999998887653  22233332 3457899999999999997 56777777  68999999999


Q ss_pred             HHHHH----HHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh----
Q 037127          166 KINNF----FNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES----  237 (307)
Q Consensus       166 ~~~~~----f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----  237 (307)
                      +..+.    |+.+|....   ...++..+.  ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++    
T Consensus       150 ~~~~~~~~~f~~~~~~~~---~~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~  224 (363)
T 3dp7_A          150 EQVQKSWFGFDHFYSDQS---FGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAG  224 (363)
T ss_dssp             HHHHHHHHHHHHHTTCCC---CHHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhhhh---HHHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHh
Confidence            87763    566655432   123444443  35678999999999999999999999999999999999998886    


Q ss_pred             --cCCCeEEEecCCCCC---CC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127          238 --DLANLKYVGGDMFEA---IP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       238 --~~~rv~~~~~d~~~~---~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~  304 (307)
                        ..+||+|+.+|++++   +| .||+|+++++||+|+++++.++|++++++|+|   ||+++|+|.+.+++.
T Consensus       225 ~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~  294 (363)
T 3dp7_A          225 LSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQR  294 (363)
T ss_dssp             CTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCS
T ss_pred             cCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCcc
Confidence              236899999999984   66 59999999999999999999999999999999   999999999988754

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=100.00  E-value=3e-40  Score=306.06  Aligned_cols=271  Identities=22%  Similarity=0.355  Sum_probs=237.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCC
Q 037127           12 LLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSS   91 (307)
Q Consensus        12 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~   91 (307)
                      ..+....+++++.+++.+++|++++++|||+.|..  +|.|++|||+++|+   +++.++|+|++|++.|+|++..    
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~----   83 (374)
T 1qzz_A           13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE----   83 (374)
T ss_dssp             CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC----
T ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC----
Confidence            35567789999999999999999999999999964  79999999999999   7899999999999999999864    


Q ss_pred             CCCCCCCC--eeecChhcchhhcCCCCChHHHHHHhcCcchh-hhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHH
Q 037127           92 RNNNDEEQ--GYVLTNASKLLLKDSPLSVTPLLQAVLDPILL-SPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKIN  168 (307)
Q Consensus        92 ~~~~~~~~--~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~  168 (307)
                            ++  +|++|+.++.+.++++.++..++.+..++..+ ..|..|+++++++. ++|...+|.++|+++..+++..
T Consensus        84 ------~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~  156 (374)
T 1qzz_A           84 ------KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALA  156 (374)
T ss_dssp             ------C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHH
T ss_pred             ------CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHH
Confidence                  45  99999999999888877888887765433456 88999999999987 5788888999999999999999


Q ss_pred             HHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCe
Q 037127          169 NFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANL  242 (307)
Q Consensus       169 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv  242 (307)
                      +.|..+|........+.+++.++  +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++      ..++|
T Consensus       157 ~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v  234 (374)
T 1qzz_A          157 DSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRV  234 (374)
T ss_dssp             HHHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTE
T ss_pred             HHHHHHHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCce
Confidence            99999998877666677888877  67788999999999999999999999999999999889988876      34589


Q ss_pred             EEEecCCCCCCCC-ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee--ecCCC
Q 037127          243 KYVGGDMFEAIPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM--MRENK  303 (307)
Q Consensus       243 ~~~~~d~~~~~p~-~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~--~~~~~  303 (307)
                      +|+.+|+++++|. ||+|++++++|+|+++++.++|++++++|+|   ||+++|+|.  +.+++
T Consensus       235 ~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~  295 (374)
T 1qzz_A          235 TVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDG  295 (374)
T ss_dssp             EEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-----
T ss_pred             EEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCC
Confidence            9999999987774 9999999999999999889999999999999   999999999  77654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=100.00  E-value=3.6e-39  Score=297.45  Aligned_cols=262  Identities=22%  Similarity=0.367  Sum_probs=232.6

Q ss_pred             chhhHHHHHHHHHHHH-HHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127            9 DTELLEAQAHVWNHIF-NFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus         9 ~~~~~~~~~~l~~~~~-g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ++++.++..++++++. |++.+++|++++++|||+.|..  +|.|++|||+++|+   +++.++|||++|++.|+|++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~   98 (359)
T 1x19_A           24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLED   98 (359)
T ss_dssp             CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEeeC
Confidence            5677888899999996 8999999999999999999986  79999999999999   6899999999999999999973


Q ss_pred             cCCCCCCCCCCCeeecChhcc-hhhcCCC---CChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccC
Q 037127           88 LNSSRNNNDEEQGYVLTNASK-LLLKDSP---LSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGD  163 (307)
Q Consensus        88 ~~~~~~~~~~~~~y~~t~~s~-~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~  163 (307)
                                 ++|++|+.+. ++.++++   .++.+++.+. ....+..|..|+++++++.+           |+++.+
T Consensus        99 -----------~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~-----------~~~~~~  155 (359)
T 1x19_A           99 -----------GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN-----------FKGQVP  155 (359)
T ss_dssp             -----------TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC-----------CCCSSC
T ss_pred             -----------CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-----------Cccccc
Confidence                       6999999754 7777777   6888887765 34578899999999998762           677778


Q ss_pred             CcH---HHHHHHHHHHhchh-hhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh--
Q 037127          164 EPK---INNFFNEAMASDAR-LATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES--  237 (307)
Q Consensus       164 ~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~--  237 (307)
                      +++   ..+.|...|...+. ...+.+++.++  +.+..+|||||||+|.++..+++.+|+++++++|+|.+++.+++  
T Consensus       156 ~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~  233 (359)
T 1x19_A          156 YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENA  233 (359)
T ss_dssp             SSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHH
Confidence            888   99999999998887 77788888887  67788999999999999999999999999999999889888875  


Q ss_pred             ----cCCCeEEEecCCCC-CCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          238 ----DLANLKYVGGDMFE-AIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       238 ----~~~rv~~~~~d~~~-~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                          ..+||+++.+|+++ +.+++|+|++++++|+|+++++.++|++++++|+|   ||+++|+|.+.++.
T Consensus       234 ~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~  301 (359)
T 1x19_A          234 AEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDP  301 (359)
T ss_dssp             HHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCT
T ss_pred             HhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCC
Confidence                35689999999998 56668999999999999999899999999999999   99999999988765

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=100.00  E-value=1.4e-39  Score=300.13  Aligned_cols=268  Identities=23%  Similarity=0.417  Sum_probs=239.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCC
Q 037127           15 AQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNN   94 (307)
Q Consensus        15 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~   94 (307)
                      ...++++++.+++.+++|.+++++|||+.|..  +|.|++|||+++|+   +++.++|+|++|++.|+|++..       
T Consensus        19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~-------   86 (360)
T 1tw3_A           19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA-------   86 (360)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE-------
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC-------
Confidence            35788999999999999999999999999964  79999999999999   6899999999999999999865       


Q ss_pred             CCCCCeeecChhcchhhcCCCCChHHHHHHhcCcc-hhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHH
Q 037127           95 NDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPI-LLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNE  173 (307)
Q Consensus        95 ~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~  173 (307)
                         +++|++|+.++.|+++++.++..++.+...+. .+..|..|.+.++++. ++|+..+|.++|+++..+++....|..
T Consensus        87 ---~g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~  162 (360)
T 1tw3_A           87 ---PGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDS  162 (360)
T ss_dssp             ---TTEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHH
T ss_pred             ---CCeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHH
Confidence               58999999999999888778888876654333 5678899999999987 578888899999999999999999999


Q ss_pred             HHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEec
Q 037127          174 AMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGG  247 (307)
Q Consensus       174 ~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~  247 (307)
                      .|...+....+.+++.++  +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++      ..++|+|+.+
T Consensus       163 ~~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~  240 (360)
T 1tw3_A          163 LLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG  240 (360)
T ss_dssp             HHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             HHHHHHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeC
Confidence            999877776777888887  67788999999999999999999999999999999888888876      3458999999


Q ss_pred             CCCCCCCC-ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee-cCCC
Q 037127          248 DMFEAIPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM-RENK  303 (307)
Q Consensus       248 d~~~~~p~-~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~-~~~~  303 (307)
                      |+++++|. ||+|++.+++|+|+++++.++|++++++|+|   ||+++|.|.+ .++.
T Consensus       241 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~  295 (360)
T 1tw3_A          241 DFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHEN  295 (360)
T ss_dssp             CTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGG
T ss_pred             CCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCC
Confidence            99987774 9999999999999999989999999999999   9999999998 6654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=6.1e-39  Score=295.01  Aligned_cols=266  Identities=17%  Similarity=0.272  Sum_probs=227.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127            9 DTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL   88 (307)
Q Consensus         9 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~   88 (307)
                      ++..++....+++++.+++.+++|++|+++|||++|.   +|.|++|||+++|+   +++.++|||++|++.|+|++.  
T Consensus        18 ~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~--   89 (352)
T 3mcz_A           18 DKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGM---VEGKAAILLHALAALGLLTKE--   89 (352)
T ss_dssp             SCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE--
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEec--
Confidence            4445555666999999999999999999999999996   49999999999999   689999999999999999997  


Q ss_pred             CCCCCCCCCCCeeecChhcc-hhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHH
Q 037127           89 NSSRNNNDEEQGYVLTNASK-LLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKI  167 (307)
Q Consensus        89 ~~~~~~~~~~~~y~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~  167 (307)
                               +++|++|+.++ ++.++++.++..++.+.  ...+..|.+|+++++++.+.+|+...      ++..+++.
T Consensus        90 ---------~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~~------~~~~~~~~  152 (352)
T 3mcz_A           90 ---------GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQES------RFAHDTRA  152 (352)
T ss_dssp             ---------TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHHH------HTTTCHHH
T ss_pred             ---------CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccccc------ccccCHHH
Confidence                     37899999998 56667777888887654  34678999999999999865554321      23568889


Q ss_pred             HHHHHHHHHhchhhhHHHHHHhccccccC-CCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCC
Q 037127          168 NNFFNEAMASDARLATRVVIHKCKNVFEG-LNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLA  240 (307)
Q Consensus       168 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~-~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~  240 (307)
                      .+.|..+|...... ...+++.++  +.+ ..+|||||||+|.++..+++.+|+++++++|+|.+++.+++      ..+
T Consensus       153 ~~~f~~~m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~  229 (352)
T 3mcz_A          153 RDAFNDAMVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGG  229 (352)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCC
Confidence            99999999874333 246788887  555 88999999999999999999999999999999988888875      346


Q ss_pred             CeEEEecCCCCC---CC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127          241 NLKYVGGDMFEA---IP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG  305 (307)
Q Consensus       241 rv~~~~~d~~~~---~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~  305 (307)
                      ||+++.+|++++   .| +||+|++++++|+|+++++.++|++++++|+|   ||+++|+|.+.++++.
T Consensus       230 ~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~  295 (352)
T 3mcz_A          230 RVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRV  295 (352)
T ss_dssp             GEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSS
T ss_pred             ceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCC
Confidence            899999999984   45 49999999999999999999999999999999   9999999999887643

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-38  Score=290.54  Aligned_cols=261  Identities=23%  Similarity=0.312  Sum_probs=230.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCC
Q 037127           17 AHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNND   96 (307)
Q Consensus        17 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~   96 (307)
                      ..+++++.|++.+++|++++++|||+.|..  +|.|++|||+++|+   +++.++|||++|++.|+|++.          
T Consensus         8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~----------   72 (335)
T 2r3s_A            8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ----------   72 (335)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec----------
Confidence            578999999999999999999999999986  79999999999999   689999999999999999875          


Q ss_pred             CCCeeecChhc-chhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHH
Q 037127           97 EEQGYVLTNAS-KLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAM  175 (307)
Q Consensus        97 ~~~~y~~t~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m  175 (307)
                       +++|++|+.+ +.+.++++.++..++.+..++..+..|.+|+++++++. ++|+     + |+++.++++..+.|...|
T Consensus        73 -~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~  144 (335)
T 2r3s_A           73 -AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAM  144 (335)
T ss_dssp             -TTEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHS
T ss_pred             -CCEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHH
Confidence             5899999999 57888777788888888755467889999999999987 3443     3 888888999999999999


Q ss_pred             HhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCC
Q 037127          176 ASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDM  249 (307)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~  249 (307)
                      ..........+++.+++.+.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++      ..+||+|+.+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~  224 (335)
T 2r3s_A          145 SPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSA  224 (335)
T ss_dssp             GGGGHHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCT
T ss_pred             HHHHhhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccc
Confidence            88877767778887772116778999999999999999999999999999999988888876      256899999999


Q ss_pred             CC-CCC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          250 FE-AIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       250 ~~-~~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      ++ +.| +||+|++++++|+|+++++.++|++++++|+|   ||+++|+|...++.
T Consensus       225 ~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~  277 (335)
T 2r3s_A          225 FEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAV---EGKVIVFDFIPNSD  277 (335)
T ss_dssp             TTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTT
T ss_pred             ccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCC
Confidence            98 566 49999999999999999999999999999999   99999999998764

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.73  E-value=4.8e-17  Score=143.08  Aligned_cols=107  Identities=18%  Similarity=0.285  Sum_probs=95.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC--CCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCCCccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF--PNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~i~~~~  263 (307)
                      ..+..+|||||||+|.++..+++.+  |+++++++|+ +.+++.|++      ...+|+|+++|+.+ +.+.+|+|++..
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~  147 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  147 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence            3567899999999999999999986  5789999999 899999876      35689999999988 666899999999


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      +||++++++...+|++++++|+|   ||+++|.|...+++
T Consensus       148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~  184 (261)
T 4gek_A          148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFED  184 (261)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSS
T ss_pred             eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCC
Confidence            99999988888999999999999   99999999887654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.67  E-value=1.2e-15  Score=140.93  Aligned_cols=216  Identities=7%  Similarity=-0.006  Sum_probs=141.3

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch-hhcCCCCC
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL-LLKDSPLS  117 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~-l~~~~~~~  117 (307)
                      |+|..| .  +|.|+.|||+++|+   +++.+++||+.|.+.|+++..           ++ |++|+.++. +....+..
T Consensus        47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~-----------~~-~~lt~~~~~~l~~~~~~~  108 (373)
T 2qm3_A           47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFE-----------DG-VKLTEKGEELVAEYGIGK  108 (373)
T ss_dssp             HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECS-----------SS-SEECHHHHHHHHHHTCCC
T ss_pred             HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEEC-----------CC-EEECHHHHHHHHhcCccc
Confidence            788888 4  68999999999999   789999999999999999875           34 999998774 43322111


Q ss_pred             hHHHHHH--hcCc----chhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHHHhchhhhHHHHHHhcc
Q 037127          118 VTPLLQA--VLDP----ILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCK  191 (307)
Q Consensus       118 ~~~~~~~--~~~~----~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~  191 (307)
                      ....+..  ....    .+...|..+.+.++......       ..|+-....++..  ....       .  .... ..
T Consensus       109 ~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~-------l--~~~~-~~  169 (373)
T 2qm3_A          109 RYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL-------HEFDQAYVTPETT--VARV-------I--LMHT-RG  169 (373)
T ss_dssp             CCC------------CGGGHHHHHHHHHHHTTCCCCC-------GGGTCCCBCHHHH--HHHH-------H--HHHH-TT
T ss_pred             cccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc-------hhcCCeecCHHHH--HHHH-------H--HHhh-cC
Confidence            1111100  0001    11123445555555432110       1111100011110  0000       0  0011 11


Q ss_pred             ccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-----CccEEE
Q 037127          192 NVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-----PADAVV  260 (307)
Q Consensus       192 ~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-----~~D~i~  260 (307)
                        .....+||||| |+|.++..+++..|+.+++++|+ +.+++.+++     ..++|+++.+|+.+++|     .||+|+
T Consensus       170 --~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi  246 (373)
T 2qm3_A          170 --DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFI  246 (373)
T ss_dssp             --CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred             --CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEE
Confidence              22467999999 99999999999988889999999 899998876     23389999999988433     499999


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      +..+++...   ...+|++++++|+|   ||++++++...
T Consensus       247 ~~~p~~~~~---~~~~l~~~~~~Lkp---gG~~~~~~~~~  280 (373)
T 2qm3_A          247 TDPPETLEA---IRAFVGRGIATLKG---PRCAGYFGITR  280 (373)
T ss_dssp             ECCCSSHHH---HHHHHHHHHHTBCS---TTCEEEEEECT
T ss_pred             ECCCCchHH---HHHHHHHHHHHccc---CCeEEEEEEec
Confidence            987765442   47899999999999   89777776654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.66  E-value=1.7e-15  Score=130.24  Aligned_cols=105  Identities=19%  Similarity=0.323  Sum_probs=93.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC-CccEEEechhhccC
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP-PADAVVLKWILHDW  268 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~  268 (307)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++   ...+++++++|+.+ +.+ .+|+|++..++|++
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~  122 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL  122 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence            4568999999999999999999999999999999 888888887   23389999999988 444 59999999999999


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ++++...+|++++++|+|   ||+++|.+...++
T Consensus       123 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~  153 (234)
T 3dtn_A          123 EDEDKKELYKRSYSILKE---SGIFINADLVHGE  153 (234)
T ss_dssp             CHHHHHHHHHHHHHHEEE---EEEEEEEEECBCS
T ss_pred             CHHHHHHHHHHHHHhcCC---CcEEEEEEecCCC
Confidence            998877899999999999   9999999987654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.58  E-value=2.8e-14  Score=120.96  Aligned_cols=103  Identities=17%  Similarity=0.247  Sum_probs=90.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCCCCC--CccEEEechhhccCC
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFEAIP--PADAVVLKWILHDWN  269 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~~~  269 (307)
                      .....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++ ...+++++.+|+.+..+  .||+|++..++|+++
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~  121 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP  121 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCC
Confidence            345679999999999999999998  679999999 888988887 44789999999988543  599999999999999


Q ss_pred             hhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          270 DEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       270 ~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +++...+|++++++|+|   ||++++.+...+
T Consensus       122 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~  150 (218)
T 3ou2_A          122 DDRFEAFWESVRSAVAP---GGVVEFVDVTDH  150 (218)
T ss_dssp             HHHHHHHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCC---CeEEEEEeCCCC
Confidence            98788999999999999   999999987653

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.58  E-value=3.5e-14  Score=125.63  Aligned_cols=102  Identities=15%  Similarity=0.277  Sum_probs=90.6

Q ss_pred             CCCeEEEecCCc---hHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC------------C--C
Q 037127          196 GLNSLVDVGGAT---GTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA------------I--P  254 (307)
Q Consensus       196 ~~~~vlDvGgG~---G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~------------~--p  254 (307)
                      +..+|||||||+   |.++..+.+.+|+.+++++|+ |.|++.+++   ..++++|+++|+.++            +  .
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~  156 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS  156 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence            457999999999   999888889999999999999 899999887   347899999999862            2  2


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      .+|+|++..+||++++++...+|++++++|+|   ||+++|.+...
T Consensus       157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~  199 (274)
T 2qe6_A          157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVD  199 (274)
T ss_dssp             SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBC
T ss_pred             CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecC
Confidence            58999999999999998788999999999999   99999998765

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.58  E-value=1.3e-14  Score=126.91  Aligned_cols=112  Identities=17%  Similarity=0.309  Sum_probs=93.5

Q ss_pred             hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC
Q 037127          182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP  254 (307)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p  254 (307)
                      ....+++.+.  .....+|||||||+|.++..+++..+  +++++|+ +.+++.+++     ..++++++.+|+.+ +++
T Consensus        25 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~  100 (260)
T 1vl5_A           25 DLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT  100 (260)
T ss_dssp             CHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred             HHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence            3455666555  55678999999999999999999875  8999999 888888876     23689999999987 555


Q ss_pred             --CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          255 --PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       255 --~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                        .||+|++..++|++++.  ..+|++++++|+|   ||++++.+...++
T Consensus       101 ~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~  145 (260)
T 1vl5_A          101 DERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPE  145 (260)
T ss_dssp             TTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCS
T ss_pred             CCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC---CCEEEEEEcCCCC
Confidence              49999999999999886  4899999999999   9999999887654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.57  E-value=2.7e-14  Score=121.45  Aligned_cols=111  Identities=14%  Similarity=0.273  Sum_probs=93.9

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CCC-CccEEE
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIP-PADAVV  260 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p-~~D~i~  260 (307)
                      .+++.+.  ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|+
T Consensus        36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~  111 (220)
T 3hnr_A           36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIV  111 (220)
T ss_dssp             HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEE
T ss_pred             HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEE
Confidence            3444444  346779999999999999999997  679999999 888888887 34699999999988 444 599999


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +..++|++++.+...+|++++++|+|   ||+++|.++..+.
T Consensus       112 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~  150 (220)
T 3hnr_A          112 STYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFAD  150 (220)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSS
T ss_pred             ECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccC
Confidence            99999999998877799999999999   9999999876543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.57  E-value=2.1e-14  Score=125.48  Aligned_cols=113  Identities=15%  Similarity=0.307  Sum_probs=96.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC--Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP--PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p--~~  256 (307)
                      ..+++.+.  ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++   ..++++++.+|+.+ +++  .|
T Consensus        45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  121 (266)
T 3ujc_A           45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF  121 (266)
T ss_dssp             HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred             HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence            44555554  5667899999999999999999987 679999999 888888887   12799999999988 554  49


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      |+|++..++|+++.++...+|++++++|+|   ||+++|.++..+.
T Consensus       122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~  164 (266)
T 3ujc_A          122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATE  164 (266)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESC
T ss_pred             EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCC
Confidence            999999999999877788999999999999   9999999987664

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.55  E-value=1.4e-14  Score=123.66  Aligned_cols=100  Identities=14%  Similarity=0.195  Sum_probs=87.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--CccEEEechhhcc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PADAVVLKWILHD  267 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~  267 (307)
                      ...+|||||||+|.++..+++..+  +++++|+ +.+++.+++    ...+++++.+|+.+ +.+  .+|+|++..++|.
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~  115 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  115 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence            467999999999999999999877  8999999 888888876    34789999999988 444  4999999999888


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      +..++...+|++++++|+|   ||++++.++..
T Consensus       116 ~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~  145 (227)
T 1ve3_A          116 FEPLELNQVFKEVRRVLKP---SGKFIMYFTDL  145 (227)
T ss_dssp             CCHHHHHHHHHHHHHHEEE---EEEEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHcCC---CcEEEEEecCh
Confidence            8877778999999999999   99999988753

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.55  E-value=4.1e-14  Score=123.20  Aligned_cols=112  Identities=9%  Similarity=0.060  Sum_probs=93.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-  254 (307)
                      ..++..+.  ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+|+.+ +.+ 
T Consensus        26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  102 (256)
T 1nkv_A           26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE  102 (256)
T ss_dssp             HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence            44555555  5667899999999999999999988 678999999 888888876      23689999999987 333 


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      .||+|++..++|++++.  ..+|++++++|+|   ||++++.++.+...
T Consensus       103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~  146 (256)
T 1nkv_A          103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQL  146 (256)
T ss_dssp             CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTC
T ss_pred             CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCC
Confidence            49999999999999865  5889999999999   99999999876543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.54  E-value=3e-14  Score=120.63  Aligned_cols=96  Identities=22%  Similarity=0.314  Sum_probs=84.7

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechhhccC
Q 037127          199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWILHDW  268 (307)
Q Consensus       199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~  268 (307)
                      +|||||||+|.++..+++. |+.+++++|+ +.+++.+++      ..++++++.+|+.+ +++  .||+|++..++|++
T Consensus        46 ~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~  124 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW  124 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGC
T ss_pred             EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhc
Confidence            9999999999999999998 8889999999 888888876      35689999999988 555  49999999999999


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ++.  ..+|++++++|+|   ||+++|.+...
T Consensus       125 ~~~--~~~l~~~~~~L~p---gG~l~~~~~~~  151 (219)
T 3dlc_A          125 EDV--ATAFREIYRILKS---GGKTYIGGGFG  151 (219)
T ss_dssp             SCH--HHHHHHHHHHEEE---EEEEEEEECCS
T ss_pred             cCH--HHHHHHHHHhCCC---CCEEEEEeccC
Confidence            765  5899999999999   99999987543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.54  E-value=2.3e-14  Score=124.58  Aligned_cols=112  Identities=20%  Similarity=0.345  Sum_probs=93.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--CCCeEEEecCCCC-CCC--Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--LANLKYVGGDMFE-AIP--PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--~~rv~~~~~d~~~-~~p--~~  256 (307)
                      ..++..+.  ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ .  ..+++++.+|+.+ +++  .|
T Consensus        83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T 1xtp_A           83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence            34555554  4567899999999999999999886 457999999 888888887 2  2689999999987 444  49


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      |+|++.+++|++++++...+|++++++|+|   ||+++|.+....
T Consensus       160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~  201 (254)
T 1xtp_A          160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCST  201 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC-
T ss_pred             EEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCC
Confidence            999999999999988889999999999999   999999987543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.54  E-value=6.6e-14  Score=124.78  Aligned_cols=104  Identities=18%  Similarity=0.294  Sum_probs=90.3

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~  263 (307)
                      +.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+|+.+ +++  .||+|++..
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  158 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  158 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence            5667899999999999999999987 469999999 788888765      34789999999988 554  499999999


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      ++|++++.  ..+|++++++|+|   ||++++.++..+..
T Consensus       159 ~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~  193 (297)
T 2o57_A          159 AFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDG  193 (297)
T ss_dssp             CGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTT
T ss_pred             hhhhcCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCC
Confidence            99999884  6999999999999   99999999876653

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.54  E-value=4.4e-14  Score=119.37  Aligned_cols=102  Identities=7%  Similarity=0.008  Sum_probs=86.0

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--c---------------CCCeEEEecCCCC-CC-
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--D---------------LANLKYVGGDMFE-AI-  253 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~---------------~~rv~~~~~d~~~-~~-  253 (307)
                      ..+..+|||+|||+|..+..|++.  +.+++++|+ +.+++.|++  .               ..+++|+++|+.+ +. 
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            456789999999999999999998  569999999 889998876  1               3589999999998 33 


Q ss_pred             --CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          254 --PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       254 --p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                        ..||+|++..++|++++++..+++++++++|+|   ||+++++....
T Consensus        98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~  143 (203)
T 1pjz_A           98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEY  143 (203)
T ss_dssp             HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESS
T ss_pred             cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEec
Confidence              259999999999999987778899999999999   89855554433

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.53  E-value=8.3e-14  Score=122.46  Aligned_cols=111  Identities=21%  Similarity=0.225  Sum_probs=94.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-  254 (307)
                      +.+++.+.  ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+|+.+ +++ 
T Consensus        51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  127 (273)
T 3bus_A           51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED  127 (273)
T ss_dssp             HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence            45566665  5667899999999999999999987 679999999 788887765      34689999999988 554 


Q ss_pred             -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                       .||+|++..++|++++.  ..+|++++++|+|   ||+++|.+.....
T Consensus       128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~  171 (273)
T 3bus_A          128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLA  171 (273)
T ss_dssp             TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESS
T ss_pred             CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccC
Confidence             49999999999999876  5899999999999   9999999987654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.53  E-value=7.1e-14  Score=118.85  Aligned_cols=102  Identities=12%  Similarity=0.037  Sum_probs=86.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-----C----CCeEEEecCCCC-CCC--CccEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-----L----ANLKYVGGDMFE-AIP--PADAV  259 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-----~----~rv~~~~~d~~~-~~p--~~D~i  259 (307)
                      ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .     .    .+++++.+|+.. +.+  .||+|
T Consensus        27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  106 (217)
T 3jwh_A           27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA  106 (217)
T ss_dssp             HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence            34567999999999999999999998899999999 888888876 1     1    289999999865 332  59999


Q ss_pred             EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ++..++|++++++...+|++++++|+|   ||.+++...
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~  142 (217)
T 3jwh_A          107 TVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPN  142 (217)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEB
T ss_pred             eeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccC
Confidence            999999999988888999999999999   886665543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.53  E-value=5.6e-14  Score=119.62  Aligned_cols=100  Identities=11%  Similarity=0.083  Sum_probs=85.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-----C----CCeEEEecCCCC-CCC--CccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-----L----ANLKYVGGDMFE-AIP--PADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-----~----~rv~~~~~d~~~-~~p--~~D~i~  260 (307)
                      .+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .     .    .+++++.+|+.. +.+  .||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            4567999999999999999999999899999999 888888876 1     1    289999999965 332  599999


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      +..++|++++++..++|++++++|+|   ||.+++..
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~~  141 (219)
T 3jwg_A          108 VIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVSTP  141 (219)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEE
T ss_pred             EHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEcc
Confidence            99999999988888999999999999   88555443

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.52  E-value=1.1e-13  Score=122.77  Aligned_cols=113  Identities=12%  Similarity=0.181  Sum_probs=93.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~  256 (307)
                      ..+++.+.  ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++      ..++++++.+|+.+....|
T Consensus        54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f  130 (287)
T 1kpg_A           54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV  130 (287)
T ss_dssp             HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence            44555555  56678999999999999999997775 49999999 888888876      2468999999996522469


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      |+|++..++|++++++...+|++++++|+|   ||+++|.+...+.
T Consensus       131 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~  173 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLH  173 (287)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECC
T ss_pred             eEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCC
Confidence            999999999999876678999999999999   9999999887653

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.51  E-value=2.4e-13  Score=122.24  Aligned_cols=121  Identities=9%  Similarity=0.024  Sum_probs=96.6

Q ss_pred             HHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEec
Q 037127          175 MASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGG  247 (307)
Q Consensus       175 m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~  247 (307)
                      +........+.+++.+. .+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+
T Consensus        97 ~~~~~~~~~~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  174 (312)
T 3vc1_A           97 LHRLESAQAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC  174 (312)
T ss_dssp             HHHHHHHHHHHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             hhhHHHHHHHHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            33333333344555544 14567899999999999999999986 579999999 888888876      3468999999


Q ss_pred             CCCC-CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          248 DMFE-AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       248 d~~~-~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      |+.+ +++  .||+|++..++|+++   ...+|++++++|+|   ||++++.+....+.
T Consensus       175 d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~  227 (312)
T 3vc1_A          175 NMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPR  227 (312)
T ss_dssp             CTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTT
T ss_pred             ChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEcccccc
Confidence            9988 554  499999999999995   46999999999999   99999999877653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.51  E-value=7.9e-14  Score=118.48  Aligned_cols=112  Identities=19%  Similarity=0.313  Sum_probs=94.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC-
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP-  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p-  254 (307)
                      ..++..+.  ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++     ..+++++..+|+.+ +.+ 
T Consensus        27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred             HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence            44555555  5667899999999999999999997 7889999999 888888876     33589999999987 444 


Q ss_pred             -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                       .||+|++..++|++++.  ..+|++++++|+|   ||+++|.+....+
T Consensus       105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~  148 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEE  148 (219)
T ss_dssp             SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSC
T ss_pred             CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccc
Confidence             49999999999999865  5899999999999   9999999876554

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.51  E-value=1.6e-13  Score=122.74  Aligned_cols=113  Identities=14%  Similarity=0.177  Sum_probs=95.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~  256 (307)
                      ..+++.+.  ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++      ..++++++.+|+.+....|
T Consensus        62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f  138 (302)
T 3hem_A           62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV  138 (302)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred             HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence            44566555  56778999999999999999999987 79999999 888888876      3458999999997652359


Q ss_pred             cEEEechhhccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          257 DAVVLKWILHDWND-------EECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       257 D~i~~~~vLh~~~~-------~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      |+|++..++|++++       +....+|++++++|+|   ||+++|.+...++
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~  188 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPD  188 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCC
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccC
Confidence            99999999999954       5567999999999999   9999999887654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.51  E-value=1.2e-13  Score=119.42  Aligned_cols=110  Identities=18%  Similarity=0.393  Sum_probs=92.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--  254 (307)
                      ..++..+.  ..+..+|||||||+|.++..+++..+  +++++|+ +.+++.+++     ..++++++.+|+.+ +++  
T Consensus        11 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~   86 (239)
T 1xxl_A           11 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   86 (239)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             chHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence            44455555  56778999999999999999999865  8999999 888888775     23689999999987 444  


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      .||+|++..++|+|++.  ..+|++++++|+|   ||++++.+...++
T Consensus        87 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~  129 (239)
T 1xxl_A           87 SFDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPE  129 (239)
T ss_dssp             CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCS
T ss_pred             cEEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEEEcCCCC
Confidence            49999999999999875  5899999999999   9999999887654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.51  E-value=1.7e-13  Score=119.99  Aligned_cols=102  Identities=18%  Similarity=0.186  Sum_probs=86.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC-CccEEEech-hhccCCh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP-PADAVVLKW-ILHDWND  270 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p-~~D~i~~~~-vLh~~~~  270 (307)
                      .+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++.. ++|++++
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~  126 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG  126 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence            456899999999999999999984  47999999 88999888745589999999988 444 599999998 9999865


Q ss_pred             -hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          271 -EECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       271 -~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                       ++...+|++++++|+|   ||+++|.+...+
T Consensus       127 ~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~  155 (263)
T 3pfg_A          127 QAELDAALERFAAHVLP---DGVVVVEPWWFP  155 (263)
T ss_dssp             HHHHHHHHHHHHHTEEE---EEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHhcCC---CcEEEEEeccCh
Confidence             5677999999999999   888888654433

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.50  E-value=1.6e-13  Score=114.52  Aligned_cols=111  Identities=15%  Similarity=0.190  Sum_probs=92.3

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC-Cc
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP-PA  256 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p-~~  256 (307)
                      .+++.+.  ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++     ..++++++.+|+.+ +.+ .+
T Consensus        23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~   98 (199)
T 2xvm_A           23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY   98 (199)
T ss_dssp             HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred             HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence            3444444  345679999999999999999987  679999999 888888776     23479999999987 334 59


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      |+|++..++|++++++...+|++++++|+|   ||+++|++...++
T Consensus        99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~  141 (199)
T 2xvm_A           99 DFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTA  141 (199)
T ss_dssp             EEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCS
T ss_pred             eEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccC
Confidence            999999999999977788999999999999   9999998876654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=9.1e-14  Score=120.34  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=89.7

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC-------CccEEEec
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP-------PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p-------~~D~i~~~  262 (307)
                      ..+..+|||||||+|.++..+++.++  +++++|+ +.+++.+++  ...+++++++|+.+ +.+       .+|+|++.
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence            34567899999999999999999987  7999999 888988887  45589999999998 222       28999999


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      .++|++++++...+|++++++|+|   ||+++|++...+
T Consensus       132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~  167 (245)
T 3ggd_A          132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTG  167 (245)
T ss_dssp             SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTT
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCcc
Confidence            999999988788999999999999   999999997654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.50  E-value=1e-13  Score=122.98  Aligned_cols=101  Identities=17%  Similarity=0.224  Sum_probs=89.0

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-CccEEEechhh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PADAVVLKWIL  265 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D~i~~~~vL  265 (307)
                      ..+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .||+|++..++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l   99 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL   99 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence            456789999999999999999999995 89999999 788888776    33489999999998 444 49999999999


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      |++++.  ..+|++++++|+|   ||++++.++.
T Consensus       100 ~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~  128 (284)
T 3gu3_A          100 LHMTTP--ETMLQKMIHSVKK---GGKIICFEPH  128 (284)
T ss_dssp             GGCSSH--HHHHHHHHHTEEE---EEEEEEEECC
T ss_pred             hcCCCH--HHHHHHHHHHcCC---CCEEEEEecc
Confidence            999886  4899999999999   9999999876

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.50  E-value=2.5e-13  Score=122.34  Aligned_cols=113  Identities=14%  Similarity=0.220  Sum_probs=95.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~  256 (307)
                      ..+++.+.  ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+|+.+....|
T Consensus        80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f  156 (318)
T 2fk8_A           80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV  156 (318)
T ss_dssp             HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred             HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence            44555555  5667899999999999999999987 569999999 888888876      2367999999987632469


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      |+|++..++|++++++...+|++++++|+|   ||+++|.++..+.
T Consensus       157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~  199 (318)
T 2fk8_A          157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYH  199 (318)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCC
T ss_pred             CEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCC
Confidence            999999999999877778999999999999   9999999887654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.50  E-value=9.4e-14  Score=121.69  Aligned_cols=98  Identities=10%  Similarity=0.148  Sum_probs=83.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND  270 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~  270 (307)
                      ....+|||||||+|.++..|++.+  .+++++|+ +.+++.|+ ..++|+++.+|+.+ +++  .+|+|++..++|.++.
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~-~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~  114 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQAL-RHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL  114 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCC-CCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhh-hcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH
Confidence            345689999999999999999885  57999999 88998888 56789999999987 566  4999999999987754


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          271 EECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +   +++++++++|||   ||+++++....+
T Consensus       115 ~---~~~~e~~rvLkp---gG~l~~~~~~~~  139 (257)
T 4hg2_A          115 D---RFWAELRRVARP---GAVFAAVTYGLT  139 (257)
T ss_dssp             H---HHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred             H---HHHHHHHHHcCC---CCEEEEEECCCC
Confidence            3   789999999999   999999886544

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.49  E-value=2e-13  Score=117.96  Aligned_cols=98  Identities=18%  Similarity=0.367  Sum_probs=85.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC---CCC--CccEEEechhhcc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIP--PADAVVLKWILHD  267 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p--~~D~i~~~~vLh~  267 (307)
                      +.+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++   +++++.+|+.+   +++  .||+|++..++|+
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~---~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~  113 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEG---KFNVVKSDAIEYLKSLPDKYLDGVMISHFVEH  113 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHT---TSEEECSCHHHHHHTSCTTCBSEEEEESCGGG
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHh---hcceeeccHHHHhhhcCCCCeeEEEECCchhh
Confidence            456689999999999999999998  567999999 788888873   39999999876   444  4999999999999


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +++++...+|++++++|+|   ||++++..+.
T Consensus       114 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~  142 (240)
T 3dli_A          114 LDPERLFELLSLCYSKMKY---SSYIVIESPN  142 (240)
T ss_dssp             SCGGGHHHHHHHHHHHBCT---TCCEEEEEEC
T ss_pred             CCcHHHHHHHHHHHHHcCC---CcEEEEEeCC
Confidence            9988788999999999999   9999987764

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.49  E-value=2.6e-13  Score=118.09  Aligned_cols=103  Identities=14%  Similarity=0.158  Sum_probs=88.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~  263 (307)
                      +.+..+|||||||+|.++..+++.+|. +++++|+ +.+++.+++      ..++++++.+|+.+ +++  .||+|++..
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  122 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG  122 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence            455679999999999999999999986 9999999 888888776      35679999999977 444  499999999


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      ++|+++   ...+|++++++|+|   ||++++.++.+...
T Consensus       123 ~l~~~~---~~~~l~~~~~~L~p---gG~l~~~~~~~~~~  156 (257)
T 3f4k_A          123 AIYNIG---FERGMNEWSKYLKK---GGFIAVSEASWFTS  156 (257)
T ss_dssp             CSCCCC---HHHHHHHHHTTEEE---EEEEEEEEEEESSS
T ss_pred             hHhhcC---HHHHHHHHHHHcCC---CcEEEEEEeeccCC
Confidence            999984   25899999999999   99999999875443

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.49  E-value=1.7e-13  Score=120.79  Aligned_cols=101  Identities=20%  Similarity=0.399  Sum_probs=89.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~v  264 (307)
                      +.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++     ..+++++..+|+.+ +.+  .||+|++..+
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            45678999999999999999999999999999999 888888876     24689999999987 444  4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +|++++.+  .+|++++++|+|   ||++++.+..
T Consensus       115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~  144 (276)
T 3mgg_A          115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGD  144 (276)
T ss_dssp             GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEC
T ss_pred             hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcC
Confidence            99998874  899999999999   9999998854

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.49  E-value=7.7e-14  Score=117.25  Aligned_cols=100  Identities=13%  Similarity=0.144  Sum_probs=87.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChhH
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEE  272 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~  272 (307)
                      ..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++...+++++.+|+.+ +.+  .||+|++..++|+++.++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~  119 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE  119 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence            678999999999999999998  568999999 88898888756689999999987 444  499999999999998777


Q ss_pred             HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          273 CVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       273 ~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      ...+|++++++|+|   ||+++|.+...+
T Consensus       120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~  145 (203)
T 3h2b_A          120 LPDALVALRMAVED---GGGLLMSFFSGP  145 (203)
T ss_dssp             HHHHHHHHHHTEEE---EEEEEEEEECCS
T ss_pred             HHHHHHHHHHHcCC---CcEEEEEEccCC
Confidence            78999999999999   899998876543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.48  E-value=2.7e-13  Score=121.09  Aligned_cols=99  Identities=19%  Similarity=0.215  Sum_probs=85.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh----c---CCCeEEEecCCCC-CC--------CCc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES----D---LANLKYVGGDMFE-AI--------PPA  256 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~----~---~~rv~~~~~d~~~-~~--------p~~  256 (307)
                      .+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++    .   ..+++|+++|+.+ +.        ..|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            467899999999999999999987 8899999999 888888876    2   6799999999987 32        249


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      |+|++..++|++ +  ...+|++++++|+|   ||+++|++..
T Consensus       115 D~V~~~~~l~~~-~--~~~~l~~~~~~Lkp---gG~l~i~~~~  151 (299)
T 3g5t_A          115 DMITAVECAHWF-D--FEKFQRSAYANLRK---DGTIAIWGYA  151 (299)
T ss_dssp             EEEEEESCGGGS-C--HHHHHHHHHHHEEE---EEEEEEEEEE
T ss_pred             eEEeHhhHHHHh-C--HHHHHHHHHHhcCC---CcEEEEEecC
Confidence            999999999999 4  46899999999999   9999985544

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.48  E-value=1.9e-13  Score=119.07  Aligned_cols=109  Identities=16%  Similarity=0.184  Sum_probs=92.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccEEE
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADAVV  260 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~i~  260 (307)
                      ..++..+.  .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++..++++++.+|+.+..+  .||+|+
T Consensus        23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~  100 (259)
T 2p35_A           23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY  100 (259)
T ss_dssp             HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred             HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence            34555555  45678999999999999999999999999999999 88888887656789999999987223  499999


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +..++|++++.  ..+|++++++|+|   ||++++..+.
T Consensus       101 ~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~  134 (259)
T 2p35_A          101 ANAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPD  134 (259)
T ss_dssp             EESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEEC
T ss_pred             EeCchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCC
Confidence            99999999765  5899999999999   8999988753

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.48  E-value=2.1e-13  Score=119.71  Aligned_cols=103  Identities=12%  Similarity=0.109  Sum_probs=88.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~  263 (307)
                      +.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++      ..++++++.+|+.+ +++  .||+|++..
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~  122 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG  122 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence            456789999999999999999998 7889999999 888888876      34789999999987 444  499999999


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      ++|+++ .  ..+|++++++|+|   ||++++.+..+...
T Consensus       123 ~~~~~~-~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~  156 (267)
T 3kkz_A          123 AIYNIG-F--ERGLNEWRKYLKK---GGYLAVSECSWFTD  156 (267)
T ss_dssp             CGGGTC-H--HHHHHHHGGGEEE---EEEEEEEEEEESSS
T ss_pred             CceecC-H--HHHHHHHHHHcCC---CCEEEEEEeeecCC
Confidence            999993 2  5889999999999   99999999876543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.47  E-value=9.9e-14  Score=123.77  Aligned_cols=100  Identities=15%  Similarity=0.211  Sum_probs=84.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-----C----------------------------
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-----L----------------------------  239 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-----~----------------------------  239 (307)
                      ....+|||||||+|.++..+++.+|..+++++|+ +.+++.|++ .     .                            
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            3578999999999999999999999999999999 888888876 1     1                            


Q ss_pred             -----------------------------CCeEEEecCCCCCC--------CCccEEEechhhccC----ChhHHHHHHH
Q 037127          240 -----------------------------ANLKYVGGDMFEAI--------PPADAVVLKWILHDW----NDEECVKILK  278 (307)
Q Consensus       240 -----------------------------~rv~~~~~d~~~~~--------p~~D~i~~~~vLh~~----~~~~~~~~L~  278 (307)
                                                   .+|+|..+|+....        ..||+|++..+++++    +++...++|+
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                         58999999998632        259999999999554    7778889999


Q ss_pred             HHHHhccCCCCCcEEEEEe
Q 037127          279 KCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       279 ~~~~~L~p~~~gg~lli~e  297 (307)
                      +++++|+|   ||+++|..
T Consensus       205 ~~~~~Lkp---GG~lil~~  220 (292)
T 3g07_A          205 RIYRHLRP---GGILVLEP  220 (292)
T ss_dssp             HHHHHEEE---EEEEEEEC
T ss_pred             HHHHHhCC---CcEEEEec
Confidence            99999999   88877753

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.46  E-value=4e-13  Score=116.85  Aligned_cols=105  Identities=17%  Similarity=0.097  Sum_probs=87.8

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC--CccE
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADA  258 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~  258 (307)
                      .+...++  ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++  ...+++++.+|+.+ +.+  .||+
T Consensus        35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence            3444444  346789999999999999999998664 8999999 888988887  45789999999987 444  5999


Q ss_pred             EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      |++..++|++++.  ..+|++++++|+|   ||++++..
T Consensus       112 v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~  145 (253)
T 3g5l_A          112 VLSSLALHYIASF--DDICKKVYINLKS---SGSFIFSV  145 (253)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEE
T ss_pred             EEEchhhhhhhhH--HHHHHHHHHHcCC---CcEEEEEe
Confidence            9999999999764  5899999999999   89988864

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.46  E-value=2.1e-13  Score=117.42  Aligned_cols=100  Identities=17%  Similarity=0.148  Sum_probs=86.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLKWILHD  267 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~  267 (307)
                      ..+|||||||+|.++..+++  ++.+++++|+ +.+++.+++      ...+++|+.+|+.+..+  .||+|++..++|+
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence            35999999999999999987  4778999999 888888876      23569999999998433  5999999999999


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +++++...+|++++++|+|   ||++++++....
T Consensus       145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~  175 (235)
T 3lcc_A          145 IEPEMRPAWAKSMYELLKP---DGELITLMYPIT  175 (235)
T ss_dssp             SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCS
T ss_pred             CCHHHHHHHHHHHHHHCCC---CcEEEEEEeccc
Confidence            9987788999999999999   999999877554

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.46  E-value=2.4e-13  Score=117.29  Aligned_cols=98  Identities=16%  Similarity=0.297  Sum_probs=84.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCCCCC--CccEEEechhhccCChh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFEAIP--PADAVVLKWILHDWNDE  271 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~~~~~  271 (307)
                      +..+|||||||+|.++..+++..+  +++++|+ +.+++.+++ ...+++++.+|+.+..+  .||+|++.++||++++.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~  119 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP  119 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH
Confidence            456899999999999999999876  7899999 888888887 33389999999987433  49999999999999876


Q ss_pred             HHHHHHHHHH-HhccCCCCCcEEEEEeeec
Q 037127          272 ECVKILKKCK-EAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       272 ~~~~~L~~~~-~~L~p~~~gg~lli~e~~~  300 (307)
                        ..+|++++ ++|+|   ||+++|.++..
T Consensus       120 --~~~l~~~~~~~Lkp---gG~l~i~~~~~  144 (250)
T 2p7i_A          120 --VALLKRINDDWLAE---GGRLFLVCPNA  144 (250)
T ss_dssp             --HHHHHHHHHTTEEE---EEEEEEEEECT
T ss_pred             --HHHHHHHHHHhcCC---CCEEEEEcCCh
Confidence              48999999 99999   99999987643

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.46  E-value=2.2e-13  Score=120.45  Aligned_cols=107  Identities=18%  Similarity=0.202  Sum_probs=89.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC-CccEEE
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP-PADAVV  260 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p-~~D~i~  260 (307)
                      ..+++.+.  ..+..+|||||||+|.++..+++  ++.+++++|+ +.+++.+++..+++++..+|+.+ +.+ .||+|+
T Consensus        47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~  122 (279)
T 3ccf_A           47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVF  122 (279)
T ss_dssp             CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEE
T ss_pred             HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEE
Confidence            44555544  45677999999999999999999  6889999999 88898888644789999999987 444 499999


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +..++|++++.  ..+|++++++|+|   ||++++..+.
T Consensus       123 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~  156 (279)
T 3ccf_A          123 SNAMLHWVKEP--EAAIASIHQALKS---GGRFVAEFGG  156 (279)
T ss_dssp             EESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred             EcchhhhCcCH--HHHHHHHHHhcCC---CcEEEEEecC
Confidence            99999999876  4899999999999   8999887654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.46  E-value=1.8e-13  Score=118.29  Aligned_cols=102  Identities=18%  Similarity=0.360  Sum_probs=88.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c----CCCeEEEecCCCC-CCC--CccEEEechhhc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D----LANLKYVGGDMFE-AIP--PADAVVLKWILH  266 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~----~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh  266 (307)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ .    ..+++++.+|+.+ +.+  .||+|++..++|
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            47899999999999999999887 568999999 888888876 2    3469999999876 333  499999999999


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      ++++++...+|++++++|+|   ||+++|.+...+
T Consensus       158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~  189 (241)
T 2ex4_A          158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQ  189 (241)
T ss_dssp             GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBS
T ss_pred             hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCC
Confidence            99998888999999999999   999999987654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.45  E-value=4.6e-13  Score=115.36  Aligned_cols=106  Identities=15%  Similarity=0.174  Sum_probs=86.9

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC--CccE
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADA  258 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~  258 (307)
                      .+...++  ..+..+|||||||+|.++..+++... .+++++|+ +.+++.+++  ...+++++.+|+.+ +.+  .+|+
T Consensus        34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  110 (243)
T 3bkw_A           34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL  110 (243)
T ss_dssp             HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence            3444444  34577999999999999999998732 38999999 888888887  34579999999987 444  4999


Q ss_pred             EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      |++..++|++++.  ..+|++++++|+|   ||++++...
T Consensus       111 v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~  145 (243)
T 3bkw_A          111 AYSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFSTE  145 (243)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             EEEeccccccchH--HHHHHHHHHhcCc---CcEEEEEeC
Confidence            9999999999864  5899999999999   899988764

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.45  E-value=1.2e-13  Score=123.79  Aligned_cols=106  Identities=11%  Similarity=0.104  Sum_probs=89.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHH-HHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIA-KAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~  263 (307)
                      +.+..+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++      ..++++++++|+.+ +.+ .||+|++..
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            4567899999999999999996 6789999999999 888888876      24569999999988 444 599999999


Q ss_pred             hhccCChhH-HHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          264 ILHDWNDEE-CVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       264 vLh~~~~~~-~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ++|++++.+ ...+|++++++|+|   ||+++|.+...++
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~  232 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPP  232 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCT
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCC
Confidence            999997654 45699999999999   9999998866543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.45  E-value=4.5e-13  Score=117.03  Aligned_cols=101  Identities=6%  Similarity=-0.064  Sum_probs=86.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c---------------------CCCeEEEecCCCC
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D---------------------LANLKYVGGDMFE  251 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~---------------------~~rv~~~~~d~~~  251 (307)
                      .+..+|||+|||+|..+..|++.  +.+++++|+ +.+++.|++ .                     ..+|+|+++|+++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            35679999999999999999987  679999999 888888864 2                     2689999999998


Q ss_pred             -CC---CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          252 -AI---PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       252 -~~---p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                       +.   ..||+|++..++|.+++++...++++++++|+|   ||+++++....
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~  194 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSY  194 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEEC
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEec
Confidence             33   359999999999999888778999999999999   89987665543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.45  E-value=7.2e-13  Score=113.86  Aligned_cols=103  Identities=21%  Similarity=0.218  Sum_probs=86.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC-CccEEEe-chhhccCCh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP-PADAVVL-KWILHDWND  270 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p-~~D~i~~-~~vLh~~~~  270 (307)
                      .+..+|||||||+|.++..+++.++  +++++|+ +.+++.+++..++++++.+|+.+ +.+ .+|+|++ ..++|++++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~  116 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT  116 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence            4567999999999999999999976  8999999 88998888755679999999987 344 5999995 559988754


Q ss_pred             -hHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          271 -EECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       271 -~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                       ++...+|++++++|+|   ||++++.+...++
T Consensus       117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~  146 (239)
T 3bxo_A          117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPE  146 (239)
T ss_dssp             HHHHHHHHHHHHHTEEE---EEEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHHhcCC---CeEEEEEeccCcc
Confidence             5678999999999999   8999887766554

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.45  E-value=5.7e-13  Score=118.10  Aligned_cols=112  Identities=20%  Similarity=0.206  Sum_probs=92.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~  256 (307)
                      ..+++.+.  ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ..-+++++.+|+.+ +.+ .|
T Consensus       110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f  185 (286)
T 3m70_A          110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY  185 (286)
T ss_dssp             HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred             HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence            34444444  346779999999999999999998  569999999 788888876    23389999999988 334 59


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      |+|++..++|++++++...+|++++++|+|   ||+++|+.....+
T Consensus       186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~  228 (286)
T 3m70_A          186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTD  228 (286)
T ss_dssp             EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCS
T ss_pred             cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCC
Confidence            999999999999988888999999999999   8998887765544

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.44  E-value=6e-13  Score=112.86  Aligned_cols=100  Identities=13%  Similarity=0.220  Sum_probs=85.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEAIP--PADAVVLKWILHD  267 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~  267 (307)
                      ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++   ...+++++.+|+.+..+  .||+|++..++|+
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  126 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY  126 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence            3456799999999999999999985  58999999 888888887   34589999999988333  5999999999999


Q ss_pred             CCh-hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          268 WND-EECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       268 ~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +++ ++..++|++++++|+|   ||++++..+
T Consensus       127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~  155 (216)
T 3ofk_A          127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSA  155 (216)
T ss_dssp             SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence            997 4556899999999999   899888654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.43  E-value=6.9e-13  Score=114.28  Aligned_cols=99  Identities=15%  Similarity=0.224  Sum_probs=86.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC--CccEEEechhhccC
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADAVVLKWILHDW  268 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~  268 (307)
                      .+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++  ...+++++.+|+.+ +.+  .||+|++.+++|++
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  129 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT  129 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence            45679999999999999999998  668999999 888888886  46789999999988 554  49999999999999


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ++.  ..+|++++++|+|   ||+++|.+...
T Consensus       130 ~~~--~~~l~~~~~~L~p---gG~l~i~~~~~  156 (242)
T 3l8d_A          130 EEP--LRALNEIKRVLKS---DGYACIAILGP  156 (242)
T ss_dssp             SCH--HHHHHHHHHHEEE---EEEEEEEEECT
T ss_pred             cCH--HHHHHHHHHHhCC---CeEEEEEEcCC
Confidence            776  4889999999999   89999887543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.43  E-value=2.1e-13  Score=111.29  Aligned_cols=100  Identities=21%  Similarity=0.331  Sum_probs=86.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccEEEechhhccCCh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADAVVLKWILHDWND  270 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~~~~  270 (307)
                      ..+..+|||||||+|.++..+++.+.  +++++|+ +.+++.+++..+++++..+|  .+++  .||+|++..++|++++
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~l~~~~~   90 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANSFHDMDD   90 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESCSTTCSC
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccchhcccC
Confidence            45677999999999999999999873  8999999 88888887656789999999  4343  5999999999999976


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          271 EECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      .  ..+|++++++|+|   ||++++.+....+
T Consensus        91 ~--~~~l~~~~~~L~p---gG~l~~~~~~~~~  117 (170)
T 3i9f_A           91 K--QHVISEVKRILKD---DGRVIIIDWRKEN  117 (170)
T ss_dssp             H--HHHHHHHHHHEEE---EEEEEEEEECSSC
T ss_pred             H--HHHHHHHHHhcCC---CCEEEEEEcCccc
Confidence            5  5899999999999   9999999877654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.43  E-value=6.7e-13  Score=118.50  Aligned_cols=110  Identities=15%  Similarity=0.242  Sum_probs=88.4

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cC----CCeEEEecCCCC-C
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DL----ANLKYVGGDMFE-A  252 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~----~rv~~~~~d~~~-~  252 (307)
                      ...++..+.   ....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ..    .+++++++|+.+ +
T Consensus        72 ~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (299)
T 3g2m_A           72 AREFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA  146 (299)
T ss_dssp             HHHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred             HHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence            344454444   33458999999999999999998  578999999 888888876    22    789999999998 4


Q ss_pred             CC-CccEEEec-hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          253 IP-PADAVVLK-WILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       253 ~p-~~D~i~~~-~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      .+ .||+|++. .++|++++++...+|++++++|+|   ||+++|.....
T Consensus       147 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~  193 (299)
T 3g2m_A          147 LDKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMS  193 (299)
T ss_dssp             CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECC
T ss_pred             cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecC
Confidence            44 49988865 678878877788999999999999   88888876554

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=1.2e-12  Score=114.63  Aligned_cols=107  Identities=16%  Similarity=0.249  Sum_probs=88.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEE
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAV  259 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i  259 (307)
                      +.+.+.++  ..+..+|||||||+|.++..+++  |+.+++++|+ +.+++.+++ ..+++|+.+|+.+ +++  .||+|
T Consensus        24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~d~~~~~~~~~~fD~v   98 (261)
T 3ege_A           24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVV-HPQVEWFTGYAENLALPDKSVDGV   98 (261)
T ss_dssp             HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCC-CTTEEEECCCTTSCCSCTTCBSEE
T ss_pred             HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHh-ccCCEEEECchhhCCCCCCCEeEE
Confidence            34444444  45678999999999999999998  6789999999 888888874 2399999999987 554  49999


Q ss_pred             EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      ++.+++|++++.  ..+|++++++|+    ||+++|++...+
T Consensus        99 ~~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~  134 (261)
T 3ege_A           99 ISILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIR  134 (261)
T ss_dssp             EEESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGG
T ss_pred             EEcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCc
Confidence            999999999775  589999999999    489999887543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.41  E-value=9.2e-13  Score=110.94  Aligned_cols=104  Identities=11%  Similarity=0.105  Sum_probs=86.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--CccEEEechhhc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PADAVVLKWILH  266 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh  266 (307)
                      .+..+|||||||+|.++..++.. ++.+++++|. +.+++.+++    ...+++++.+|+.+ +.+  .+|+|++..++|
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  100 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF  100 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence            45679999999999985555443 4679999999 888888876    34689999999987 444  499999999999


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +++.++..++|++++++|+|   ||++++.+...++
T Consensus       101 ~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~  133 (209)
T 2p8j_A          101 HMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKD  133 (209)
T ss_dssp             GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTS
T ss_pred             hCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccc
Confidence            99877788999999999999   9999998877654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.41  E-value=2e-12  Score=112.64  Aligned_cols=96  Identities=15%  Similarity=0.185  Sum_probs=83.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--CccEEEechhh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PADAVVLKWIL  265 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vL  265 (307)
                      ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ +++  .||+|++..++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW  114 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence            456789999999999999999987  578999999 888888876    25789999999977 444  49999999999


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      |++++.  ..+|++++++|+|   ||++++.
T Consensus       115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~  140 (263)
T 2yqz_A          115 HLVPDW--PKVLAEAIRVLKP---GGALLEG  140 (263)
T ss_dssp             GGCTTH--HHHHHHHHHHEEE---EEEEEEE
T ss_pred             hhcCCH--HHHHHHHHHHCCC---CcEEEEE
Confidence            999865  5899999999999   8998887

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.41  E-value=8e-13  Score=111.73  Aligned_cols=101  Identities=17%  Similarity=0.098  Sum_probs=85.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC-CccEEEechhhccCCh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP-PADAVVLKWILHDWND  270 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~~~  270 (307)
                      +.+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.. ++++..+|+.+ +.+ .||+|++..++|++++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  117 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL-GRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR  117 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-TSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc-CCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence            345679999999999999999987  568999999 88888887521 67888899877 322 4999999999999998


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          271 EECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ++...+|++++++|+|   ||++++.....
T Consensus       118 ~~~~~~l~~~~~~Lkp---gG~l~~~~~~~  144 (211)
T 3e23_A          118 DELADVLKLIWRALKP---GGLFYASYKSG  144 (211)
T ss_dssp             HHHHHHHHHHHHHEEE---EEEEEEEEECC
T ss_pred             HHHHHHHHHHHHhcCC---CcEEEEEEcCC
Confidence            8888999999999999   89988875543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.41  E-value=8e-13  Score=117.07  Aligned_cols=97  Identities=15%  Similarity=0.221  Sum_probs=84.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC--CC--CccEEEechh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA--IP--PADAVVLKWI  264 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~--~p--~~D~i~~~~v  264 (307)
                      +..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++      ..++++++.+|+.+.  .+  .||+|++..+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  145 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV  145 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred             CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence            4679999999999999999998  679999999 888888876      227899999999873  33  4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +|++++.  ..+|++++++|+|   ||+++|.++.
T Consensus       146 l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~  175 (285)
T 4htf_A          146 LEWVADP--RSVLQTLWSVLRP---GGVLSLMFYN  175 (285)
T ss_dssp             GGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEB
T ss_pred             hhcccCH--HHHHHHHHHHcCC---CeEEEEEEeC
Confidence            9999876  5899999999999   8999988764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.40  E-value=2e-12  Score=110.61  Aligned_cols=101  Identities=14%  Similarity=0.239  Sum_probs=86.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c---------CCCeEEEecCCCC-CCC--CccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D---------LANLKYVGGDMFE-AIP--PADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~---------~~rv~~~~~d~~~-~~p--~~D~i~  260 (307)
                      .+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++ .         ..++++..+|+.+ +.+  .||+|+
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  106 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV  106 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence            45679999999999999999998  679999999 888888876 1         2368999999987 444  499999


Q ss_pred             echhhccCChh-HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          261 LKWILHDWNDE-ECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       261 ~~~vLh~~~~~-~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      +..++|++++. +...+|++++++|+|   ||++++.+...
T Consensus       107 ~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~  144 (235)
T 3sm3_A          107 MQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQ  144 (235)
T ss_dssp             EESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC
T ss_pred             EcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCc
Confidence            99999999764 466899999999999   99999998754

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.40  E-value=1.2e-12  Score=120.38  Aligned_cols=113  Identities=15%  Similarity=0.126  Sum_probs=91.0

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------------c-CCCeEEEecC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------------D-LANLKYVGGD  248 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------------~-~~rv~~~~~d  248 (307)
                      ..++..+.  .....+|||||||+|..+..++..++..+++++|+ +.+++.|++             . .++|+|+++|
T Consensus       163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            44555555  66778999999999999999999887767999999 667666653             1 3789999999


Q ss_pred             CCC-CC----CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127          249 MFE-AI----PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       249 ~~~-~~----p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~  304 (307)
                      +++ ++    +.+|+|++..+++ ++  +....|+++++.|+|   ||+|++.|.+.+++.
T Consensus       241 ~~~lp~~d~~~~aDVVf~Nn~~F-~p--dl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~  295 (438)
T 3uwp_A          241 FLSEEWRERIANTSVIFVNNFAF-GP--EVDHQLKERFANMKE---GGRIVSSKPFAPLNF  295 (438)
T ss_dssp             TTSHHHHHHHHTCSEEEECCTTC-CH--HHHHHHHHHHTTSCT---TCEEEESSCSSCTTC
T ss_pred             ccCCccccccCCccEEEEccccc-Cc--hHHHHHHHHHHcCCC---CcEEEEeecccCCCC
Confidence            998 43    3699999887764 33  346778899999999   999999999998765

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.40  E-value=1.5e-12  Score=120.43  Aligned_cols=103  Identities=14%  Similarity=0.230  Sum_probs=89.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchhc---------C----CCeEEEecCCCC-------C
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLESD---------L----ANLKYVGGDMFE-------A  252 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~---------~----~rv~~~~~d~~~-------~  252 (307)
                      .+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++.         .    ++++|+.+|+.+       +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            456799999999999999999987 7889999999 8888888761         2    699999999987       4


Q ss_pred             CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          253 IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       253 ~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ++  .||+|++..++|++++.  ..+|++++++|+|   ||++++.+.....
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~  208 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFSDVYADR  208 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEESS
T ss_pred             CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEEEecccc
Confidence            44  49999999999999875  5899999999999   9999999876653

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.39  E-value=5.1e-12  Score=106.30  Aligned_cols=105  Identities=16%  Similarity=0.218  Sum_probs=87.5

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC---CC
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI---PP  255 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~---p~  255 (307)
                      .++..+.  ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++     ..++++++.+|+.+..   +.
T Consensus        31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  108 (204)
T 3e05_A           31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD  108 (204)
T ss_dssp             HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred             HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence            3445555  56678999999999999999999999999999999 888888876     3478999999997743   45


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +|+|++...++     +...+++++.+.|+|   ||++++....
T Consensus       109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~  144 (204)
T 3e05_A          109 PDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVT  144 (204)
T ss_dssp             CSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECB
T ss_pred             CCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEecc
Confidence            99999998886     235899999999999   9999987654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.39  E-value=2.3e-12  Score=106.84  Aligned_cols=99  Identities=18%  Similarity=0.248  Sum_probs=85.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEec-hhhccCC
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLK-WILHDWN  269 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~-~vLh~~~  269 (307)
                      .+..+|||||||+|.++..+++.  +.+++++|. +.+++.+++...+++++.+|+.+ +.+  .+|+|++. .++|+++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~  122 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA  122 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence            46779999999999999999987  568999999 88888888755679999999988 454  49999998 8999998


Q ss_pred             hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          270 DEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       270 ~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +++...+|++++++|+|   ||++++...
T Consensus       123 ~~~~~~~l~~~~~~l~~---~G~l~~~~~  148 (195)
T 3cgg_A          123 EDGREPALANIHRALGA---DGRAVIGFG  148 (195)
T ss_dssp             HHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHhCC---CCEEEEEeC
Confidence            88788999999999999   888888654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.39  E-value=2.5e-12  Score=113.08  Aligned_cols=113  Identities=12%  Similarity=0.119  Sum_probs=89.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hH------HHHhchh------cCCCeEEEecC-
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PH------VVNGLES------DLANLKYVGGD-  248 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~------~~~~a~~------~~~rv~~~~~d-  248 (307)
                      ..+++.+.  ..+..+|||||||+|.++..+++.+ |+.+++++|+ +.      +++.+++      ..++++++.+| 
T Consensus        33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  110 (275)
T 3bkx_A           33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN  110 (275)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred             HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence            34555555  5667899999999999999999996 7789999999 43      7777765      23689999998 


Q ss_pred             CCC---CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          249 MFE---AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       249 ~~~---~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      +..   +++  .||+|++..++|++++.+  .+++.++..++|   ||++++.+...+..
T Consensus       111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~  165 (275)
T 3bkx_A          111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPT  165 (275)
T ss_dssp             TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCS
T ss_pred             hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCC
Confidence            543   233  499999999999999875  477777777777   99999999877643

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.38  E-value=5.4e-12  Score=109.48  Aligned_cols=97  Identities=22%  Similarity=0.334  Sum_probs=81.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-CccEEEec-hhhc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PADAVVLK-WILH  266 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D~i~~~-~vLh  266 (307)
                      .+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .+|+|++. ..+|
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  117 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM  117 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchh
Confidence            45679999999999999999987  679999999 888888876    34579999999987 444 59999986 4667


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +++.++...+|++++++|+|   ||.+++-
T Consensus       118 ~~~~~~~~~~l~~~~~~L~p---gG~li~~  144 (252)
T 1wzn_A          118 YFDEEDLRKLFSKVAEALKP---GGVFITD  144 (252)
T ss_dssp             GSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence            77777788999999999999   8887653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.38  E-value=2.1e-12  Score=105.86  Aligned_cols=103  Identities=15%  Similarity=0.172  Sum_probs=83.6

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC----C
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI----P  254 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~----p  254 (307)
                      ++..+.  .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++      ..+++ ++.+|..+.+    .
T Consensus        17 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~   93 (178)
T 3hm2_A           17 AISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD   93 (178)
T ss_dssp             HHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred             HHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence            344444  45677999999999999999999999999999999 778888876      23488 8889987633    3


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      .||+|++..++|+      ..+++++++.|+|   ||++++.+...
T Consensus        94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~~~  130 (178)
T 3hm2_A           94 NPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAVTV  130 (178)
T ss_dssp             CCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEECSH
T ss_pred             CCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEeecc
Confidence            5999999999986      3789999999999   99999877543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.37  E-value=9.3e-13  Score=116.98  Aligned_cols=101  Identities=16%  Similarity=0.134  Sum_probs=84.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC-C---CC--Ccc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE-A---IP--PAD  257 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~-~---~p--~~D  257 (307)
                      ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++         ...++.+..+|+.+ +   ++  .||
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD  132 (293)
T 3thr_A           55 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD  132 (293)
T ss_dssp             HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence            345679999999999999999998  448999999 788888864         13578899999877 3   34  599


Q ss_pred             EEEec-hhhccCCh-----hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          258 AVVLK-WILHDWND-----EECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       258 ~i~~~-~vLh~~~~-----~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +|++. +++|++++     ++...+|++++++|+|   ||++++..+.
T Consensus       133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~  177 (293)
T 3thr_A          133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHRN  177 (293)
T ss_dssp             EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred             EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeCC
Confidence            99998 89999988     6678999999999999   8998887643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.37  E-value=2.6e-12  Score=108.40  Aligned_cols=102  Identities=15%  Similarity=0.189  Sum_probs=85.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC--CccEEEechhhcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP--PADAVVLKWILHD  267 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~  267 (307)
                      .+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++   ..+++++..+|+.+ +++  .+|+|++..++|.
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~  119 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA  119 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence            45678999999999999999998665 8999999 888888876   23689999999987 544  4999999999876


Q ss_pred             CC-------------hhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          268 WN-------------DEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       268 ~~-------------~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      +.             .++...+|++++++|+|   ||++++.++..
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~  162 (215)
T 2pxx_A          120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA  162 (215)
T ss_dssp             HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred             hccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence            54             34567999999999999   99999988654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.36  E-value=3.6e-12  Score=109.76  Aligned_cols=95  Identities=15%  Similarity=0.161  Sum_probs=81.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-CccEEEech-hhcc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PADAVVLKW-ILHD  267 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D~i~~~~-vLh~  267 (307)
                      +..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .+|+|++.. ++|+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence            5679999999999999999998  568999999 888888876    23389999999987 444 599999998 9999


Q ss_pred             CCh-hHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          268 WND-EECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       268 ~~~-~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      +++ ++...+|++++++|+|   ||++++
T Consensus       115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~  140 (246)
T 1y8c_A          115 IIDSDDLKKYFKAVSNHLKE---GGVFIF  140 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCC---CcEEEE
Confidence            854 5678999999999999   888876

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.36  E-value=1.9e-12  Score=114.28  Aligned_cols=97  Identities=16%  Similarity=0.254  Sum_probs=81.5

Q ss_pred             CCCeEEEecCCchH----HHHHHHHHCC----CCeEEEecc-hHHHHhchh-c---------------------C-----
Q 037127          196 GLNSLVDVGGATGT----VAKAIAKAFP----NLECTDFDL-PHVVNGLES-D---------------------L-----  239 (307)
Q Consensus       196 ~~~~vlDvGgG~G~----~~~~l~~~~p----~~~~~~~Dl-~~~~~~a~~-~---------------------~-----  239 (307)
                      +..+|+|+|||+|.    .+..|++..|    +.++++.|+ +.+++.|++ .                     .     
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35689999999998    5666777655    468999999 889998876 1                     0     


Q ss_pred             ---------CCeEEEecCCCC-CCC---CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          240 ---------ANLKYVGGDMFE-AIP---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       240 ---------~rv~~~~~d~~~-~~p---~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                               .+|+|..+|+.+ ++|   .+|+|+|+++|++++++...+++++++++|+|   ||.+++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence                     369999999998 454   59999999999999998888999999999999   787776

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.35  E-value=7.3e-12  Score=111.12  Aligned_cols=101  Identities=14%  Similarity=0.107  Sum_probs=85.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CC-C--CccEEEech
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AI-P--PADAVVLKW  263 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~-p--~~D~i~~~~  263 (307)
                      .+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++      ...+++++.+|+.+ +. +  .||+|++..
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            55679999999999999998886 4568999999 888888876      12579999999987 44 2  499999999


Q ss_pred             hhcc--CChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          264 ILHD--WNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       264 vLh~--~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      ++|+  .+.++...+|++++++|+|   ||++++..+.
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~  176 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPS  176 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence            9998  5667778999999999999   8999987754

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.34  E-value=6.7e-12  Score=109.87  Aligned_cols=107  Identities=13%  Similarity=0.071  Sum_probs=82.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCC-CeEEEecCCCC----CC-CC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLA-NLKYVGGDMFE----AI-PP  255 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~-rv~~~~~d~~~----~~-p~  255 (307)
                      ..++..+.  ..+..+|||||||+|.++..++++  +.+++++|+ +.+++.+++ ... .+.....++..    .. ..
T Consensus        35 ~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~  110 (261)
T 3iv6_A           35 ENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH  110 (261)
T ss_dssp             HHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred             HHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence            44555555  566789999999999999999987  568999999 889999887 222 23333333322    11 25


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ||+|++..++|+|+.++....|++++++| |   ||++++.-.
T Consensus       111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~  149 (261)
T 3iv6_A          111 FDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK  149 (261)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred             ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence            99999999999999888889999999999 9   899987643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.33  E-value=5.5e-12  Score=106.47  Aligned_cols=95  Identities=16%  Similarity=0.148  Sum_probs=81.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND  270 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~  270 (307)
                      +..+|||||||+|.++..+     +. +++++|+ +.+++.+++...+++++.+|+.+ +.+  .+|+|++..++|++++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  110 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED  110 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence            6779999999999999887     44 8999999 88888888644789999999987 444  4999999999999986


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          271 EECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      .  .++|++++++|+|   ||+++|.++..
T Consensus       111 ~--~~~l~~~~~~L~p---gG~l~i~~~~~  135 (211)
T 2gs9_A          111 V--ERVLLEARRVLRP---GGALVVGVLEA  135 (211)
T ss_dssp             H--HHHHHHHHHHEEE---EEEEEEEEECT
T ss_pred             H--HHHHHHHHHHcCC---CCEEEEEecCC
Confidence            5  5899999999999   89999987643

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.32  E-value=7e-12  Score=107.91  Aligned_cols=95  Identities=23%  Similarity=0.361  Sum_probs=80.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-CccEEEech-hhc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PADAVVLKW-ILH  266 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D~i~~~~-vLh  266 (307)
                      ....+|||||||+|.++..+++.   .+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .+|+|++.. ++|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN  108 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence            34579999999999999999887   68999999 888888876    34689999999987 444 599999986 998


Q ss_pred             cC-ChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          267 DW-NDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       267 ~~-~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      ++ +.++...+|++++++|+|   ||++++
T Consensus       109 ~~~~~~~~~~~l~~~~~~L~p---gG~l~~  135 (243)
T 3d2l_A          109 YLQTEADVKQTFDSAARLLTD---GGKLLF  135 (243)
T ss_dssp             GCCSHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHhcCC---CeEEEE
Confidence            87 456678999999999999   888876

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.31  E-value=2.3e-11  Score=100.60  Aligned_cols=108  Identities=15%  Similarity=0.298  Sum_probs=87.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCC--CeEEEecCCCCCCC-
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLA--NLKYVGGDMFEAIP-  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~--rv~~~~~d~~~~~p-  254 (307)
                      ..+++.+.  ..+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++     ...  |++++.+|+.+..+ 
T Consensus        42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  117 (194)
T 1dus_A           42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD  117 (194)
T ss_dssp             HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred             HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence            44555555  456779999999999999999998  779999999 888888876     223  59999999988544 


Q ss_pred             -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                       .+|+|++..++| +..+....+++++++.|+|   ||++++....
T Consensus       118 ~~~D~v~~~~~~~-~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~  159 (194)
T 1dus_A          118 RKYNKIITNPPIR-AGKEVLHRIIEEGKELLKD---NGEIWVVIQT  159 (194)
T ss_dssp             SCEEEEEECCCST-TCHHHHHHHHHHHHHHEEE---EEEEEEEEES
T ss_pred             CCceEEEECCCcc-cchhHHHHHHHHHHHHcCC---CCEEEEEECC
Confidence             599999988877 3445567999999999999   8999988765

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.30  E-value=1.2e-11  Score=122.04  Aligned_cols=101  Identities=12%  Similarity=0.175  Sum_probs=86.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----------cCCCeEEEecCCCC-CCC--CccE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----------DLANLKYVGGDMFE-AIP--PADA  258 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----------~~~rv~~~~~d~~~-~~p--~~D~  258 (307)
                      .+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++           ...+++|+.+|+.+ +.+  .||+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            467899999999999999999998 5679999999 888888865           23579999999988 443  5999


Q ss_pred             EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      |++..++|++++++...++++++++|+|   | .++|..+.
T Consensus       800 VV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTPN  836 (950)
T 3htx_A          800 GTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTPN  836 (950)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEECB
T ss_pred             EEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEecC
Confidence            9999999999998888899999999999   6 66666543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.30  E-value=9.3e-12  Score=111.83  Aligned_cols=100  Identities=15%  Similarity=0.104  Sum_probs=81.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-----------CCCeEEEecCCCCC-----C--C
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-----------LANLKYVGGDMFEA-----I--P  254 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-----------~~rv~~~~~d~~~~-----~--p  254 (307)
                      .+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ .           ..+++++++|+.+.     +  +
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            3567999999999999999988 45779999999 788888875 1           13799999999873     3  2


Q ss_pred             --CccEEEechhhccC--ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          255 --PADAVVLKWILHDW--NDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       255 --~~D~i~~~~vLh~~--~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                        .+|+|++..++|+.  +.++...+|++++++|+|   ||.+++..+
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~  156 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTP  156 (313)
T ss_dssp             TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred             CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecC
Confidence              59999999999976  335567999999999999   898888765

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.30  E-value=1.8e-11  Score=108.91  Aligned_cols=99  Identities=16%  Similarity=0.211  Sum_probs=75.3

Q ss_pred             CCCeEEEecCCchHHHH----HHHHHCCCCeE--EEecc-hHHHHhchh---c---CCCeEE--EecCCCC-C------C
Q 037127          196 GLNSLVDVGGATGTVAK----AIAKAFPNLEC--TDFDL-PHVVNGLES---D---LANLKY--VGGDMFE-A------I  253 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~----~l~~~~p~~~~--~~~Dl-~~~~~~a~~---~---~~rv~~--~~~d~~~-~------~  253 (307)
                      +..+|||||||+|.++.    .++.++|+.++  +++|. +.+++.+++   .   .+++++  ..++..+ +      +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            45689999999997554    45566788854  99999 888888776   1   235554  4555432 1      2


Q ss_pred             C--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          254 P--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       254 p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +  .||+|+++++||+++|.+  +.|++++++|||   ||+++|.+..
T Consensus       132 ~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~  174 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLIIVVS  174 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEEEEC
T ss_pred             CCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCC---CcEEEEEEec
Confidence            2  499999999999999864  789999999999   9999998643

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.30  E-value=9.5e-12  Score=105.87  Aligned_cols=105  Identities=18%  Similarity=0.258  Sum_probs=85.0

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC---CCC--Cc
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIP--PA  256 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p--~~  256 (307)
                      ...+++.++   .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++..  .++..+|+.+   +.+  .|
T Consensus        22 ~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~f   94 (230)
T 3cc8_A           22 NPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL--DHVVLGDIETMDMPYEEEQF   94 (230)
T ss_dssp             CHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS--SEEEESCTTTCCCCSCTTCE
T ss_pred             HHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC--CcEEEcchhhcCCCCCCCcc
Confidence            344555443   45679999999999999999998 4 89999999 78888887422  3788899875   333  49


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      |+|++..++|++++.  ..+|++++++|+|   ||++++..+.
T Consensus        95 D~v~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~  132 (230)
T 3cc8_A           95 DCVIFGDVLEHLFDP--WAVIEKVKPYIKQ---NGVILASIPN  132 (230)
T ss_dssp             EEEEEESCGGGSSCH--HHHHHHTGGGEEE---EEEEEEEEEC
T ss_pred             CEEEECChhhhcCCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence            999999999999876  4899999999999   8999988754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.30  E-value=1.2e-11  Score=113.94  Aligned_cols=109  Identities=13%  Similarity=0.208  Sum_probs=87.1

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cC--CCeEEEecCCCCCCC-
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DL--ANLKYVGGDMFEAIP-  254 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~--~rv~~~~~d~~~~~p-  254 (307)
                      .+++.++  .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++      ..  .+++|..+|++++.+ 
T Consensus       213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~  290 (375)
T 4dcm_A          213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  290 (375)
T ss_dssp             HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred             HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence            4555555  34457999999999999999999999999999999 788888876      11  268999999999766 


Q ss_pred             -CccEEEechhhcc---CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          255 -PADAVVLKWILHD---WNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       255 -~~D~i~~~~vLh~---~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                       .||+|++.-.+|.   .++....++|++++++|+|   ||+++|+..
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~n  335 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVAN  335 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEEE
Confidence             4999999988884   3445556899999999999   899998653

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.30  E-value=5.3e-12  Score=115.12  Aligned_cols=111  Identities=15%  Similarity=0.245  Sum_probs=89.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC-Ccc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP-PAD  257 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p-~~D  257 (307)
                      +.+++.+.  .....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++    ..-.++++.+|+++..+ .||
T Consensus       186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD  263 (343)
T 2pjd_A          186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD  263 (343)
T ss_dssp             HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred             HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence            44555554  23456899999999999999999999999999999 778888876    33457889999987444 599


Q ss_pred             EEEechhhcc---CChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          258 AVVLKWILHD---WNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       258 ~i~~~~vLh~---~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +|++..++|+   ++.+...++|++++++|+|   ||+++|+...
T Consensus       264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~  305 (343)
T 2pjd_A          264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVANA  305 (343)
T ss_dssp             EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEET
T ss_pred             EEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEcC
Confidence            9999999986   3455668999999999999   9999998654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.28  E-value=1.5e-11  Score=101.64  Aligned_cols=103  Identities=13%  Similarity=0.167  Sum_probs=77.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC--CC-C-CccEEEec-
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE--AI-P-PADAVVLK-  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~--~~-p-~~D~i~~~-  262 (307)
                      +.+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++     ..++++++..++..  +. + .||+|++. 
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~   97 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL   97 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence            355679999999999999999998  789999999 888888876     23789999977655  12 3 49999877 


Q ss_pred             hhhccC------ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          263 WILHDW------NDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       263 ~vLh~~------~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      ..++.-      ..+....+|+++++.|+|   ||+++++.....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~  139 (185)
T 3mti_A           98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGH  139 (185)
T ss_dssp             C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC---
T ss_pred             CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCC
Confidence            333320      224456889999999999   999998876443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.28  E-value=2e-11  Score=108.23  Aligned_cols=97  Identities=9%  Similarity=0.160  Sum_probs=80.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCCCccEEEechhhc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIPPADAVVLKWILH  266 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p~~D~i~~~~vLh  266 (307)
                      +.++.+|||||||+|.++..++.+.++.+++++|+ |.+++.|++     ..++|+|+++|+.+ +...||+|++...  
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~--  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL--  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence            56788999999999988776666778999999999 899999887     23899999999987 3235999998654  


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                       .++.  .+++++++++|+|   ||++++.+.
T Consensus       198 -~~d~--~~~l~el~r~LkP---GG~Lvv~~~  223 (298)
T 3fpf_A          198 -AEPK--RRVFRNIHRYVDT---ETRIIYRTY  223 (298)
T ss_dssp             -CSCH--HHHHHHHHHHCCT---TCEEEEEEC
T ss_pred             -ccCH--HHHHHHHHHHcCC---CcEEEEEcC
Confidence             2443  5899999999999   999998763

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.28  E-value=2.1e-11  Score=106.09  Aligned_cols=100  Identities=10%  Similarity=0.137  Sum_probs=81.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC---CCC---CccEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AIP---PADAV  259 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~p---~~D~i  259 (307)
                      ..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++      ..++|+++.+|+.+   ..+   .||+|
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            45678999999999999999999998 789999999 888888876      34689999999865   221   59999


Q ss_pred             EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      ++..     +......+|+++.+.|+|   ||.+++-+..+.
T Consensus       141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~  174 (248)
T 3tfw_A          141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVRD  174 (248)
T ss_dssp             EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred             EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence            8854     333456899999999999   898887776654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.28  E-value=2.3e-11  Score=108.96  Aligned_cols=99  Identities=11%  Similarity=0.117  Sum_probs=77.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCC-------CeEEEecCCCC---------CCC
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLA-------NLKYVGGDMFE---------AIP  254 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~-------rv~~~~~d~~~---------~~p  254 (307)
                      ...+|||||||+|..+..+++.. ..+++++|+ +.+++.|++    ...       +++|.+.|+..         +.+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            46799999999998777766643 468999999 889999886    121       26788888832         233


Q ss_pred             --CccEEEechhhcc-CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          255 --PADAVVLKWILHD-WNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       255 --~~D~i~~~~vLh~-~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                        .||+|++..++|+ |+.++...+|++++++|+|   ||++++..+
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~  170 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTM  170 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeC
Confidence              5999999999997 5555567999999999999   899887665

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.28  E-value=2.8e-11  Score=101.37  Aligned_cols=96  Identities=14%  Similarity=0.130  Sum_probs=80.1

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127          199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND  270 (307)
Q Consensus       199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~  270 (307)
                      +|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ +.+  .||+|++.  +++++.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~  107 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPS  107 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCH
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCH
Confidence            9999999999999999987  569999999 788888876    23489999999987 444  49999985  344676


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          271 EECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      ++...+|++++++|+|   ||++++.++...
T Consensus       108 ~~~~~~l~~~~~~L~p---gG~l~~~~~~~~  135 (202)
T 2kw5_A          108 SLRQQLYPKVYQGLKP---GGVFILEGFAPE  135 (202)
T ss_dssp             HHHHHHHHHHHTTCCS---SEEEEEEEECTT
T ss_pred             HHHHHHHHHHHHhcCC---CcEEEEEEeccc
Confidence            7778999999999999   899999876543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.27  E-value=1.8e-11  Score=103.90  Aligned_cols=105  Identities=13%  Similarity=0.176  Sum_probs=84.2

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC-----CC-C-c
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA-----IP-P-A  256 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~-----~p-~-~  256 (307)
                      .++..+.  .....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++. .++.+..+|+.+.     .+ . |
T Consensus        43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~f  117 (227)
T 3e8s_A           43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDY  117 (227)
T ss_dssp             HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCE
T ss_pred             HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCc
Confidence            3444444  345689999999999999999998  668999999 8888888843 6788888887551     22 3 9


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      |+|++..++| +++.  ..+|++++++|+|   ||+++|.++..
T Consensus       118 D~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~  155 (227)
T 3e8s_A          118 DLICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHP  155 (227)
T ss_dssp             EEEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCT
T ss_pred             cEEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCc
Confidence            9999999999 6554  5899999999999   89999987644

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.27  E-value=3.8e-12  Score=109.97  Aligned_cols=98  Identities=12%  Similarity=0.060  Sum_probs=78.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC---CCC--CccEEEe---
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE---AIP--PADAVVL---  261 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~---~~p--~~D~i~~---  261 (307)
                      .++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++    ...+++++.+|...   +.+  .||.|++   
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            45779999999999999999988775 7999999 899999887    45678888888654   344  3888764   


Q ss_pred             --chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          262 --KWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       262 --~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                        ...++++++.  ..++++++++|||   ||++++++.
T Consensus       138 ~~~~~~~~~~~~--~~~~~e~~rvLkP---GG~l~f~~~  171 (236)
T 3orh_A          138 PLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYCNL  171 (236)
T ss_dssp             CCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEECCH
T ss_pred             ecccchhhhcch--hhhhhhhhheeCC---CCEEEEEec
Confidence              4555555554  5899999999999   899887753

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.27  E-value=1.7e-11  Score=108.27  Aligned_cols=104  Identities=16%  Similarity=0.148  Sum_probs=82.5

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh---cC---CCeEEEecCCCCCCC--
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES---DL---ANLKYVGGDMFEAIP--  254 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~---~~---~rv~~~~~d~~~~~p--  254 (307)
                      .++..++  ..+..+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++   ..   ++++++.+|+.++.+  
T Consensus       101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  178 (275)
T 1yb2_A          101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ  178 (275)
T ss_dssp             -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred             HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence            3444444  566789999999999999999998 78899999999 888888876   22   589999999998655  


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      .||+|++     ++++.  ..+|+++.++|+|   ||++++..+..
T Consensus       179 ~fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~  214 (275)
T 1yb2_A          179 MYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPNF  214 (275)
T ss_dssp             CEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESSH
T ss_pred             CccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEEeCCH
Confidence            4999998     45554  3789999999999   89999887643

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.26  E-value=1e-11  Score=108.00  Aligned_cols=105  Identities=13%  Similarity=0.189  Sum_probs=85.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC-
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP-  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p-  254 (307)
                      ..++..++  ..+..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.|++      ..+++++..+|+.+.++ 
T Consensus        83 ~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  160 (255)
T 3mb5_A           83 ALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE  160 (255)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred             HHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence            34455555  566789999999999999999999 88999999999 788888876      35679999999998665 


Q ss_pred             -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                       .+|+|++     ++++.  ..+|+++.++|+|   ||++++..+..
T Consensus       161 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~  197 (255)
T 3mb5_A          161 ENVDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAYTPCS  197 (255)
T ss_dssp             CSEEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEEESSH
T ss_pred             CCcCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEEECCH
Confidence             4999987     34544  3789999999999   99999887543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.25  E-value=9.5e-11  Score=102.70  Aligned_cols=103  Identities=22%  Similarity=0.284  Sum_probs=82.6

Q ss_pred             CCCeEEEecCCc---hHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c----CCCeEEEecCCCCCC-----C----Ccc
Q 037127          196 GLNSLVDVGGAT---GTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D----LANLKYVGGDMFEAI-----P----PAD  257 (307)
Q Consensus       196 ~~~~vlDvGgG~---G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~----~~rv~~~~~d~~~~~-----p----~~D  257 (307)
                      +..+|||||||+   |.....+.+..|+.+++++|. |.|++.+++ .    ..+++|+++|+.++.     |    .+|
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D  157 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD  157 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence            567999999996   344444455789999999999 899999987 2    247999999998730     1    134


Q ss_pred             -----EEEechhhccCChhH-HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          258 -----AVVLKWILHDWNDEE-CVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       258 -----~i~~~~vLh~~~~~~-~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                           .+++..+||+.++++ ...+|++++++|+|   ||+++|.+...+
T Consensus       158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d  204 (277)
T 3giw_A          158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAE  204 (277)
T ss_dssp             TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCT
T ss_pred             cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCC
Confidence                 688999999999875 47899999999999   999999887654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.25  E-value=9.2e-12  Score=107.26  Aligned_cols=101  Identities=13%  Similarity=0.134  Sum_probs=80.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC---CCC--CccEEEe-ch
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE---AIP--PADAVVL-KW  263 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~---~~p--~~D~i~~-~~  263 (307)
                      .+..+|||||||+|.++..+++..+ .+++++|+ +.+++.|++    ...+++++.+|+.+   +++  .||+|++ .+
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            4567999999999999999977544 38999999 888888876    34689999999865   344  4999998 55


Q ss_pred             h--hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          264 I--LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       264 v--Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .  .+++.......+|++++++|||   ||++++++..
T Consensus       138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~  172 (236)
T 1zx0_A          138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT  172 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence            4  4445555556889999999999   9999988653

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.24  E-value=4.6e-11  Score=111.54  Aligned_cols=112  Identities=16%  Similarity=0.272  Sum_probs=86.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhc-------hh-----c--CCCeEEEecC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGL-------ES-----D--LANLKYVGGD  248 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a-------~~-----~--~~rv~~~~~d  248 (307)
                      ..++..+.  .....+|||||||+|.++..+++.++..+++++|+ +.+++.|       ++     .  ..+|+++.+|
T Consensus       232 ~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD  309 (433)
T 1u2z_A          232 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  309 (433)
T ss_dssp             HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence            33445444  56678999999999999999999988789999999 6666666       43     1  3789999985


Q ss_pred             CC-CC--C----CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          249 MF-EA--I----PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       249 ~~-~~--~----p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      .+ .+  +    ..||+|++.++++  . ++....|+++.+.|+|   ||++++.+.+.+++
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~  365 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISLKSLRSLT  365 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred             ccccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence            54 31  1    2599999887773  2 3446788999999999   99999998877764

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.24  E-value=5.6e-11  Score=100.74  Aligned_cols=98  Identities=18%  Similarity=0.285  Sum_probs=79.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC--CccEEEechh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP--PADAVVLKWI  264 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p--~~D~i~~~~v  264 (307)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++     ..++++++.+|+.+ +  ++  .+|+|++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            456899999999999999999999999999999 888888876     24789999999987 3  43  4999998865


Q ss_pred             hccCChh-------HHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          265 LHDWNDE-------ECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       265 Lh~~~~~-------~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      .+ |...       ....+|++++++|+|   ||.+++..
T Consensus       121 ~~-~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~  156 (214)
T 1yzh_A          121 DP-WPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT  156 (214)
T ss_dssp             CC-CCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred             CC-ccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence            43 3221       124799999999999   89887754

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.24  E-value=3.1e-11  Score=102.69  Aligned_cols=90  Identities=13%  Similarity=0.098  Sum_probs=77.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChhH
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEE  272 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~  272 (307)
                      ..+|||||||+|.++..+++.      +++|. +.+++.+++.  +++++.+|+.+ +.+  .+|+|++..++|++++. 
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-  118 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-  118 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence            679999999999999988765      89999 8888888744  79999999877 444  49999999999999775 


Q ss_pred             HHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          273 CVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       273 ~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                       ..+|++++++|+|   ||++++.+..
T Consensus       119 -~~~l~~~~~~L~p---gG~l~i~~~~  141 (219)
T 1vlm_A          119 -ERALKEAYRILKK---GGYLIVGIVD  141 (219)
T ss_dssp             -HHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred             -HHHHHHHHHHcCC---CcEEEEEEeC
Confidence             5899999999999   8999988764

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.24  E-value=2.2e-11  Score=115.68  Aligned_cols=107  Identities=13%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC-
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP-  254 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p-  254 (307)
                      .+.+++.+.  ..+..+|||||||+|.++..+++ .+..+++++|++++++.|++      ..++|+++.+|+.+ +.| 
T Consensus       147 ~~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~  223 (480)
T 3b3j_A          147 QRAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE  223 (480)
T ss_dssp             HHHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred             HHHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence            345555554  44567999999999999998887 57789999999668777765      34799999999998 555 


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      .+|+|++..++|++.+++....+.++++.|+|   ||++++
T Consensus       224 ~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~  261 (480)
T 3b3j_A          224 QVDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP  261 (480)
T ss_dssp             CEEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred             CeEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence            59999998888888877778888899999999   888774

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.24  E-value=8.3e-11  Score=99.23  Aligned_cols=100  Identities=14%  Similarity=0.146  Sum_probs=79.8

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---CCC
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---IPP  255 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~p~  255 (307)
                      ++..+.  .....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++      ..++++++.+|+.+.   .+.
T Consensus        47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  122 (204)
T 3njr_A           47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL  122 (204)
T ss_dssp             HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred             HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence            334444  456789999999999999999998  779999999 888888876      234899999999883   346


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      ||+|++...+    +  .. +++++.++|+|   ||++++....
T Consensus       123 ~D~v~~~~~~----~--~~-~l~~~~~~Lkp---gG~lv~~~~~  156 (204)
T 3njr_A          123 PEAVFIGGGG----S--QA-LYDRLWEWLAP---GTRIVANAVT  156 (204)
T ss_dssp             CSEEEECSCC----C--HH-HHHHHHHHSCT---TCEEEEEECS
T ss_pred             CCEEEECCcc----c--HH-HHHHHHHhcCC---CcEEEEEecC
Confidence            9999987644    2  23 89999999999   8998886543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.23  E-value=2.5e-11  Score=110.91  Aligned_cols=107  Identities=14%  Similarity=0.149  Sum_probs=86.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC-C
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP-P  255 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~  255 (307)
                      +.+++.+.  ..+..+|||||||+|.++..+++. +..+++++|.+++++.+++      ..++++++.+|+.+ +.| .
T Consensus        40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~  116 (348)
T 2y1w_A           40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  116 (348)
T ss_dssp             HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence            44555554  456779999999999999999885 5679999999667777765      34789999999988 455 5


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +|+|++..++|++..+.....+.++++.|+|   ||++++.
T Consensus       117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~  154 (348)
T 2y1w_A          117 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT  154 (348)
T ss_dssp             EEEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred             eeEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence            9999999999888877777888999999999   8888743

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.23  E-value=2.3e-11  Score=102.25  Aligned_cols=97  Identities=14%  Similarity=0.203  Sum_probs=80.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-CccEEEechhhcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-PADAVVLKWILHD  267 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh~  267 (307)
                      .+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++     ...++++..+|+.+..+ .||+|++..++|+
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~  137 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI  137 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence            4567999999999999999887 56779999999 888888876     22349999999988544 5999999887764


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                           ...++++++++|+|   ||++++.+...
T Consensus       138 -----~~~~l~~~~~~L~~---gG~l~~~~~~~  162 (205)
T 3grz_A          138 -----LLDLIPQLDSHLNE---DGQVIFSGIDY  162 (205)
T ss_dssp             -----HHHHGGGSGGGEEE---EEEEEEEEEEG
T ss_pred             -----HHHHHHHHHHhcCC---CCEEEEEecCc
Confidence                 35889999999999   89999876554

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.23  E-value=7.3e-11  Score=104.11  Aligned_cols=99  Identities=23%  Similarity=0.312  Sum_probs=80.8

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEec----
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLK----  262 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~----  262 (307)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++     ..++++++.+|++++.+  .||+|++.    
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~  187 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  187 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence            3456899999999999999999999999999999 888888876     23589999999998653  59999997    


Q ss_pred             ---------hhhccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          263 ---------WILHDWND----------EECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       263 ---------~vLh~~~~----------~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                               .++++.|.          +....+++++++.|+|   ||++++.
T Consensus       188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~  237 (276)
T 2b3t_A          188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLE  237 (276)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEE
T ss_pred             CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence                     34444442          3447899999999999   7887774

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.23  E-value=6.8e-11  Score=100.26  Aligned_cols=96  Identities=16%  Similarity=0.172  Sum_probs=73.7

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC-----CC-CccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA-----IP-PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~-----~p-~~D~i~~~~  263 (307)
                      ..+..+|||||||+|.++..+++..++.+++++|+ +.+++.+.+   ...++.++.+|+..+     .+ .+|+|++. 
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~-  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD-  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence            45667999999999999999999988779999999 655433222   346799999998763     22 49999886 


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +.+  + ++...+|++++++|||   ||++++.
T Consensus       134 ~~~--~-~~~~~~l~~~~r~Lkp---gG~l~i~  160 (210)
T 1nt2_A          134 IAQ--K-NQIEILKANAEFFLKE---KGEVVIM  160 (210)
T ss_dssp             CCS--T-THHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             ccC--h-hHHHHHHHHHHHHhCC---CCEEEEE
Confidence            322  2 3344669999999999   9999987

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.23  E-value=3.7e-11  Score=98.34  Aligned_cols=95  Identities=17%  Similarity=0.270  Sum_probs=78.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccEEEechhhccCChh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADAVVLKWILHDWNDE  271 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~~~~~  271 (307)
                      .+..+|||||||+|.++..+++..   +++++|+ +.+++.    ..+++++.+|+.++.+  .||+|+++..+|..++.
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~----~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~   94 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES----HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD   94 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT----CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc----ccCCeEEECChhhhcccCCCCEEEECCCCccCCcc
Confidence            345699999999999999999986   9999999 777776    4689999999998655  49999998888865443


Q ss_pred             -------HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          272 -------ECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       272 -------~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                             +...+++++.+.+ |   ||++++++...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~  126 (170)
T 3q87_B           95 PIIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA  126 (170)
T ss_dssp             TTTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG
T ss_pred             ccccCCcchHHHHHHHHhhC-C---CCEEEEEEecC
Confidence                   3467889999999 7   89999987544

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.22  E-value=6.7e-11  Score=101.49  Aligned_cols=95  Identities=17%  Similarity=0.219  Sum_probs=77.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC-----CC-CccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA-----IP-PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~-----~p-~~D~i~~~~  263 (307)
                      +.+..+|||||||+|.++..+++.+|..+++++|. +.+++.+++   ..+++.++.+|+.++     .+ .+|+|+   
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~---  148 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY---  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence            45677999999999999999999988789999999 788877765   337899999999862     22 489988   


Q ss_pred             hhccCChh-HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          264 ILHDWNDE-ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       264 vLh~~~~~-~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                        |++++. ....+|+++++.|+|   ||+++|.
T Consensus       149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~  177 (230)
T 1fbn_A          149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA  177 (230)
T ss_dssp             --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             --EecCChhHHHHHHHHHHHhCCC---CcEEEEE
Confidence              555544 345679999999999   8998886

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.22  E-value=2.2e-11  Score=103.42  Aligned_cols=98  Identities=13%  Similarity=0.106  Sum_probs=73.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHh----chh-----cCCCeEEEecCCCC-CCC-CccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNG----LES-----DLANLKYVGGDMFE-AIP-PADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~----a~~-----~~~rv~~~~~d~~~-~~p-~~D~i~~  261 (307)
                      ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.    +++     ..++++++.+|+.+ +.+ ..|.+.+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~  104 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV  104 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence            45677999999999999999999999999999999 665553    222     34589999999988 443 2255542


Q ss_pred             c---hhhc--cCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          262 K---WILH--DWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       262 ~---~vLh--~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .   ..+|  +.++.  ..+|++++++|+|   ||++++.
T Consensus       105 ~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~  139 (218)
T 3mq2_A          105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVA  139 (218)
T ss_dssp             ESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEE
T ss_pred             EccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEE
Confidence            2   2222  34443  4889999999999   8888874

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.22  E-value=5.9e-11  Score=100.78  Aligned_cols=98  Identities=19%  Similarity=0.288  Sum_probs=77.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC--CccEEEechh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP--PADAVVLKWI  264 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p--~~D~i~~~~v  264 (307)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++     ..++++++.+|+.+ +  ++  .+|.|++...
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            356899999999999999999999999999999 888888775     24689999999876 2  44  4898876543


Q ss_pred             hccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          265 LHDWNDEE-------CVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       265 Lh~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      .+ |+...       ...+|+.++++|+|   ||.+++..
T Consensus       118 ~p-~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t  153 (213)
T 2fca_A          118 DP-WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT  153 (213)
T ss_dssp             CC-CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred             CC-CcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence            32 33210       24789999999999   89988764

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.21  E-value=2.2e-11  Score=103.94  Aligned_cols=98  Identities=20%  Similarity=0.252  Sum_probs=77.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC----CC--CccEEEech
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA----IP--PADAVVLKW  263 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~----~p--~~D~i~~~~  263 (307)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++     ..++++++.+|+.+.    ++  .+|.|++..
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            456899999999999999999999999999999 788887765     346799999998662    44  489998775


Q ss_pred             hhccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEe
Q 037127          264 ILHDWNDEEC-------VKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       264 vLh~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ... |+....       ..+++.++++|+|   ||++++..
T Consensus       114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t  150 (218)
T 3dxy_A          114 PDP-WHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT  150 (218)
T ss_dssp             CCC-CCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCC-ccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence            443 333211       2499999999999   88887764

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.21  E-value=4.4e-11  Score=99.84  Aligned_cols=104  Identities=14%  Similarity=0.180  Sum_probs=82.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC--C-C-CccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA--I-P-PADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~--~-p-~~D~i~~  261 (307)
                      ..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++      ..++++++.+|+.+.  . + .||+|++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            3556799999999999999999986 6779999999 888888876      147899999998662  2 2 4999998


Q ss_pred             chhhcc-------CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          262 KWILHD-------WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       262 ~~vLh~-------~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ...+..       ...++...+++++.++|+|   ||+++++....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~  142 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYG  142 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCB
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccC
Confidence            865511       1223446799999999999   89999887544

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.21  E-value=4.7e-11  Score=103.71  Aligned_cols=102  Identities=16%  Similarity=0.197  Sum_probs=82.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHH--CCCCeEEEecc-hHHHHhchh--cCC-------C----------------------
Q 037127          196 GLNSLVDVGGATGTVAKAIAKA--FPNLECTDFDL-PHVVNGLES--DLA-------N----------------------  241 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~Dl-~~~~~~a~~--~~~-------r----------------------  241 (307)
                      ...+|||+|||+|.++..+++.  +|..+++++|+ +.+++.|++  ...       +                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999999999998  78889999999 888888875  111       2                      


Q ss_pred             ---eE-------------EEecCCCCCC------C--CccEEEechhhccCCh-------hHHHHHHHHHHHhccCCCCC
Q 037127          242 ---LK-------------YVGGDMFEAI------P--PADAVVLKWILHDWND-------EECVKILKKCKEAITSNSKI  290 (307)
Q Consensus       242 ---v~-------------~~~~d~~~~~------p--~~D~i~~~~vLh~~~~-------~~~~~~L~~~~~~L~p~~~g  290 (307)
                         ++             |+.+|++++.      +  .||+|++...++...+       +....++++++++|+|   |
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g  207 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H  207 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence               77             9999999854      3  5999999877665432       5567899999999999   9


Q ss_pred             cEEEEEeeec
Q 037127          291 GKVIIIDMMR  300 (307)
Q Consensus       291 g~lli~e~~~  300 (307)
                      |+++++....
T Consensus       208 G~l~~~~~~~  217 (250)
T 1o9g_A          208 AVIAVTDRSR  217 (250)
T ss_dssp             CEEEEEESSS
T ss_pred             cEEEEeCcch
Confidence            9999865443

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.20  E-value=4.4e-12  Score=106.85  Aligned_cols=101  Identities=18%  Similarity=0.188  Sum_probs=66.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c---CCCeEEEecCCCCCC-------CCccEEEec
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D---LANLKYVGGDMFEAI-------PPADAVVLK  262 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~---~~rv~~~~~d~~~~~-------p~~D~i~~~  262 (307)
                      .+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .   ..+++++.+|+.++.       ..||+|++.
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n  108 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN  108 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence            5678999999999999999999999999999999 888888876 1   117899999988732       359999995


Q ss_pred             hhh------ccCChhHH------------------HHHHHHHHHhccCCCCCcEEEEEee
Q 037127          263 WIL------HDWNDEEC------------------VKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       263 ~vL------h~~~~~~~------------------~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      -..      +.++.+..                  ..++++++++|+|   ||++++++.
T Consensus       109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  165 (215)
T 4dzr_A          109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEV  165 (215)
T ss_dssp             CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEEC
T ss_pred             CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEE
Confidence            433      33333222                  6889999999999   999666654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.20  E-value=3e-11  Score=103.93  Aligned_cols=99  Identities=12%  Similarity=0.233  Sum_probs=80.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC-----CCccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI-----PPADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~-----p~~D~i~~  261 (307)
                      ..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++      ..++|+++.+|+.+..     ..||+|++
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            34577999999999999999999889999999999 888888876      3469999999998732     25999986


Q ss_pred             chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ...     ......+++++.+.|+|   ||.+++-+..+
T Consensus       149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~  179 (232)
T 3ntv_A          149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLY  179 (232)
T ss_dssp             ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTG
T ss_pred             cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCc
Confidence            643     22346799999999999   88887755544

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.20  E-value=6.5e-11  Score=103.41  Aligned_cols=96  Identities=15%  Similarity=0.170  Sum_probs=78.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND  270 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~  270 (307)
                      +..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++ ...  .++.+|+.+ +++  .||+|++..+++++.+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~--~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~  129 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK--NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE  129 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS--CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC--CEEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence            5679999999999999999987  568999999 888888886 332  288899987 444  4999999886666633


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          271 EECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      + ...+|++++++|+|   ||++++..+.
T Consensus       130 ~-~~~~l~~~~~~Lkp---gG~l~~~~~~  154 (260)
T 2avn_A          130 N-KDKAFSEIRRVLVP---DGLLIATVDN  154 (260)
T ss_dssp             C-HHHHHHHHHHHEEE---EEEEEEEEEB
T ss_pred             c-HHHHHHHHHHHcCC---CeEEEEEeCC
Confidence            3 46899999999999   8998887654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.19  E-value=9.5e-11  Score=98.78  Aligned_cols=98  Identities=12%  Similarity=0.149  Sum_probs=80.4

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---Cc
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP---PA  256 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p---~~  256 (307)
                      ++..+.  ..+..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++     ..++++++.+|+.+..+   .|
T Consensus        69 ~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  144 (210)
T 3lbf_A           69 MTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF  144 (210)
T ss_dssp             HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence            444444  566789999999999999999998  678999999 888888876     24589999999988432   59


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      |+|++..++|++++        ++++.|+|   ||++++.-.
T Consensus       145 D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~  175 (210)
T 3lbf_A          145 DAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVG  175 (210)
T ss_dssp             EEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEEC
T ss_pred             cEEEEccchhhhhH--------HHHHhccc---CcEEEEEEc
Confidence            99999999998886        46788999   898888654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.19  E-value=3.9e-11  Score=102.90  Aligned_cols=99  Identities=15%  Similarity=0.088  Sum_probs=72.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc--hHHHHhc---hh-----cCCCeEEEecCCCCCCCC--ccEEEec
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL--PHVVNGL---ES-----DLANLKYVGGDMFEAIPP--ADAVVLK  262 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a---~~-----~~~rv~~~~~d~~~~~p~--~D~i~~~  262 (307)
                      .+..+|||||||+|.++..+++.+|+.+++++|+  +.+++.|   ++     ...+++|..+|+.+- |.  +|.+.+.
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i  101 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSI  101 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEE
Confidence            4567899999999999999999999999999999  3455554   43     345799999999773 31  3555444


Q ss_pred             hhhccCChhH------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          263 WILHDWNDEE------CVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       263 ~vLh~~~~~~------~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      .+.+.|+...      ...+|++++++|||   ||+++|..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~  139 (225)
T 3p2e_A          102 SILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVT  139 (225)
T ss_dssp             EEESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEE
T ss_pred             EEeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEE
Confidence            4444444321      13689999999999   99998843

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.19  E-value=6.3e-11  Score=99.59  Aligned_cols=92  Identities=20%  Similarity=0.236  Sum_probs=76.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEechhhccC
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLKWILHDW  268 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~~  268 (307)
                      ..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++     ...+++++.+|+.+..+  .||+|++..+ +  
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~--  142 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A--  142 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S--
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C--
Confidence            57999999999999999999999999999999 788888776     23459999999988433  5999987542 2  


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                       +  ...+++++++.|+|   ||++++..
T Consensus       143 -~--~~~~l~~~~~~L~~---gG~l~~~~  165 (207)
T 1jsx_A          143 -S--LNDMVSWCHHLPGE---QGRFYALK  165 (207)
T ss_dssp             -S--HHHHHHHHTTSEEE---EEEEEEEE
T ss_pred             -C--HHHHHHHHHHhcCC---CcEEEEEe
Confidence             2  35899999999999   88888874

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.19  E-value=1.2e-11  Score=102.27  Aligned_cols=97  Identities=13%  Similarity=0.062  Sum_probs=77.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c--CCCeEEEecCCCCC-CC-CccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D--LANLKYVGGDMFEA-IP-PADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~--~~rv~~~~~d~~~~-~p-~~D~i~~~~v  264 (307)
                      +..+.+|||||||+|-++..++...|+++++++|+ +.+++.+++    .  ..++++  .|.... .+ .||++++..+
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~  124 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM  124 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence            35578999999999999999999999999999999 889998887    2  235666  666653 33 3999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ||+. ++ ....+.+++++|+|   ||.++-++
T Consensus       125 LHlL-~~-~~~al~~v~~~L~p---ggvfISfp  152 (200)
T 3fzg_A          125 LPVL-KQ-QDVNILDFLQLFHT---QNFVISFP  152 (200)
T ss_dssp             HHHH-HH-TTCCHHHHHHTCEE---EEEEEEEE
T ss_pred             HHhh-hh-hHHHHHHHHHHhCC---CCEEEEeC
Confidence            9999 43 24556699999999   66666655

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.18  E-value=1e-10  Score=99.00  Aligned_cols=101  Identities=13%  Similarity=0.110  Sum_probs=81.7

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP---  254 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p---  254 (307)
                      .++..+.  ..+..+|||||||+|.++..+++.. |+.+++++|. +.+++.+++     ..+++++..+|+..+.+   
T Consensus        68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  145 (215)
T 2yxe_A           68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA  145 (215)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred             HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence            3444444  4567799999999999999999987 6689999999 888888876     23679999999876543   


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      .||+|++..++|++++        ++++.|+|   ||++++...
T Consensus       146 ~fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~  178 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG  178 (215)
T ss_dssp             CEEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred             CeeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence            5999999999998873        67889999   899888753

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.17  E-value=1.5e-11  Score=107.23  Aligned_cols=100  Identities=16%  Similarity=0.151  Sum_probs=80.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCC-------------------------------
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLA-------------------------------  240 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~-------------------------------  240 (307)
                      .+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++  ...                               
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            4467899999999999999988765 58999999 788888866  221                               


Q ss_pred             -Ce-EEEecCCCCC-C------CCccEEEechhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          241 -NL-KYVGGDMFEA-I------PPADAVVLKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       241 -rv-~~~~~d~~~~-~------p~~D~i~~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                       ++ +++.+|+.+. .      ..||+|++..++|+.+..  +...+|++++++|+|   ||++++.+.
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~  199 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDA  199 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEec
Confidence             28 9999999873 1      249999999999954332  557899999999999   899998874

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.17  E-value=3.4e-11  Score=102.63  Aligned_cols=101  Identities=12%  Similarity=0.196  Sum_probs=81.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC---CC------CCcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AI------PPAD  257 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~------p~~D  257 (307)
                      .+..+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++      ..++|+++.+|+.+   ..      ..||
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            4578999999999999999999875 789999999 888888876      34689999999744   22      2599


Q ss_pred             EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +|++....+.+.+.  ..+++.+ +.|+|   ||.+++-+..++
T Consensus       137 ~V~~d~~~~~~~~~--~~~~~~~-~~Lkp---gG~lv~~~~~~~  174 (221)
T 3u81_A          137 MVFLDHWKDRYLPD--TLLLEKC-GLLRK---GTVLLADNVIVP  174 (221)
T ss_dssp             EEEECSCGGGHHHH--HHHHHHT-TCCCT---TCEEEESCCCCC
T ss_pred             EEEEcCCcccchHH--HHHHHhc-cccCC---CeEEEEeCCCCc
Confidence            99998877766443  4678877 99998   888887766654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.17  E-value=3.3e-11  Score=106.92  Aligned_cols=99  Identities=16%  Similarity=0.176  Sum_probs=74.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCC---------------------------------
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLA---------------------------------  240 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~---------------------------------  240 (307)
                      +..+|||||||+|.+. .++...+..+++++|+ +.+++.+++ ...                                 
T Consensus        71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            5679999999999944 3444444569999999 888887764 110                                 


Q ss_pred             -CeEEEecCCCCC-------CCC--ccEEEechhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          241 -NLKYVGGDMFEA-------IPP--ADAVVLKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       241 -rv~~~~~d~~~~-------~p~--~D~i~~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                       .++++.+|+.+.       ++.  ||+|++..+||+.+.+  +..++|++++++|+|   ||++++.+.
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~  216 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGA  216 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEe
Confidence             145677798762       222  9999999999985433  567999999999999   999998754

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.17  E-value=2.1e-10  Score=95.21  Aligned_cols=101  Identities=9%  Similarity=0.003  Sum_probs=80.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---C--CCccEEEech
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---I--PPADAVVLKW  263 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~--p~~D~i~~~~  263 (307)
                      .+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++     ..++++++++|+.+.   .  ..||+|++..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence            35678999999999999988874 5568999999 888888876     236899999998772   3  2599999988


Q ss_pred             hhccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeeec
Q 037127          264 ILHDWNDEECVKILKKCKE--AITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~--~L~p~~~gg~lli~e~~~  300 (307)
                      ..|. ..++..++++.+.+  .|+|   ||++++.....
T Consensus       122 p~~~-~~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~~  156 (189)
T 3p9n_A          122 PYNV-DSADVDAILAALGTNGWTRE---GTVAVVERATT  156 (189)
T ss_dssp             CTTS-CHHHHHHHHHHHHHSSSCCT---TCEEEEEEETT
T ss_pred             CCCc-chhhHHHHHHHHHhcCccCC---CeEEEEEecCC
Confidence            7663 34556789999999  9999   89888866543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.16  E-value=5.4e-11  Score=101.29  Aligned_cols=100  Identities=12%  Similarity=0.133  Sum_probs=81.3

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C-----CCcc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I-----PPAD  257 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~-----p~~D  257 (307)
                      ..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++      ..++++++.+|+.+.   .     ..||
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            34678999999999999999999998 789999999 888888775      356899999998762   1     3499


Q ss_pred             EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +|++...     ......+++++.+.|+|   ||.+++-+..+.
T Consensus       136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~  171 (223)
T 3duw_A          136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVRE  171 (223)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSGG
T ss_pred             EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence            9987654     23346899999999999   898887766654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.16  E-value=1.5e-10  Score=102.78  Aligned_cols=95  Identities=16%  Similarity=0.194  Sum_probs=76.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC-Cc---cEEEec--
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP-PA---DAVVLK--  262 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p-~~---D~i~~~--  262 (307)
                      ...+|||+|||+|.++..+++. |+.+++++|+ +.+++.+++      ..+|++|+.+|++++.+ .|   |+|++.  
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP  201 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence            4568999999999999999999 9999999999 888888876      34579999999998654 47   999986  


Q ss_pred             ----------hhhccCCh------hHHHHHHHHHH-HhccCCCCCcEEEE
Q 037127          263 ----------WILHDWND------EECVKILKKCK-EAITSNSKIGKVII  295 (307)
Q Consensus       263 ----------~vLh~~~~------~~~~~~L~~~~-~~L~p~~~gg~lli  295 (307)
                                .+. +.|.      .+...+++++. +.++|   ||++++
T Consensus       202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~  247 (284)
T 1nv8_A          202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM  247 (284)
T ss_dssp             CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred             CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence                      233 2222      11237899999 99998   888776

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.16  E-value=1.2e-10  Score=104.29  Aligned_cols=99  Identities=14%  Similarity=0.198  Sum_probs=79.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CCC--CccEEEechhh
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIP--PADAVVLKWIL  265 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p--~~D~i~~~~vL  265 (307)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++     ..+|++++.+|..+   ..+  .||+|++....
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            34899999999999999999999999999999 889999987     24799999999876   333  59999987655


Q ss_pred             ccCChhH--HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          266 HDWNDEE--CVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       266 h~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +......  ...+++.++++|+|   ||.+++.-.
T Consensus       170 ~~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~  201 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAP---GGLYVANCG  201 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             ccccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence            5332221  15899999999999   787776543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.16  E-value=1e-10  Score=106.91  Aligned_cols=97  Identities=15%  Similarity=0.195  Sum_probs=78.3

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~v  264 (307)
                      ..+..+|||||||+|.++..+++. +..+++++|++++++.|++      ..++|+++.+|+.+ +.|  .+|+|++..+
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM  142 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence            345679999999999999999997 6679999999768887776      45679999999998 555  5999998776


Q ss_pred             hccC-ChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127          265 LHDW-NDEECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       265 Lh~~-~~~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      .|.+ ..+....+|+.+.+.|+|   ||+++
T Consensus       143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li  170 (349)
T 3q7e_A          143 GYCLFYESMLNTVLHARDKWLAP---DGLIF  170 (349)
T ss_dssp             BBTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             cccccCchhHHHHHHHHHHhCCC---CCEEc
Confidence            5543 223346889999999999   88875

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.15  E-value=1.4e-10  Score=99.60  Aligned_cols=99  Identities=11%  Similarity=0.172  Sum_probs=81.5

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C--C-CccEEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I--P-PADAVV  260 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~--p-~~D~i~  260 (307)
                      ..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++      ..++++++.+|+.+.   .  + .||+|+
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence            34567999999999999999999999999999999 888888876      236899999999872   2  2 599999


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      +....+     ....+|+++.+.|+|   ||++++.+..+
T Consensus       132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~~  163 (233)
T 2gpy_A          132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVLF  163 (233)
T ss_dssp             EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTTC
T ss_pred             ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCCc
Confidence            987765     235889999999999   88888865443

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.15  E-value=3.5e-11  Score=105.46  Aligned_cols=101  Identities=17%  Similarity=0.103  Sum_probs=76.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c---------------------------------C
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D---------------------------------L  239 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~---------------------------------~  239 (307)
                      .+..+|||||||+|.++..++...- .+++++|+ +.+++.+++ .                                 .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            4567899999999988776665431 26999999 888887764 1                                 0


Q ss_pred             CCeE-EEecCCCCC-------CCCccEEEechhhccC-Ch-hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          240 ANLK-YVGGDMFEA-------IPPADAVVLKWILHDW-ND-EECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       240 ~rv~-~~~~d~~~~-------~p~~D~i~~~~vLh~~-~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .++. ++.+|+.+.       .+.||+|+++.+||+. ++ ++...+|++++++|||   ||++++.+..
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~  199 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTL  199 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEES
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEee
Confidence            1243 889999873       2259999999999974 32 4567899999999999   9999998653

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.15  E-value=1.7e-10  Score=101.02  Aligned_cols=101  Identities=15%  Similarity=0.206  Sum_probs=78.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cC--------CCeEEEecCCCCC--------CC-
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DL--------ANLKYVGGDMFEA--------IP-  254 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~--------~rv~~~~~d~~~~--------~p-  254 (307)
                      ..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ ..        +|++++.+|+.+.        ++ 
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            34567999999999999999999999999999999 888888876 22        3699999999874        23 


Q ss_pred             -CccEEEechhhcc----------------CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          255 -PADAVVLKWILHD----------------WNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       255 -~~D~i~~~~vLh~----------------~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                       .||+|++.-..+.                ........+++.+.+.|+|   ||+++++-
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~  170 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLIS  170 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEEE
Confidence             4999999732221                1222356889999999999   89988753

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.15  E-value=6.2e-11  Score=102.37  Aligned_cols=94  Identities=20%  Similarity=0.283  Sum_probs=78.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CC----C-CccEEEec
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AI----P-PADAVVLK  262 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~----p-~~D~i~~~  262 (307)
                      .+..+|||||||+|.++..+++..|+.+++++|+ +.+++.+++     ..++|+++.+|+.+ +.    + .||+|++.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            4567999999999999999999999999999999 778888876     23469999999866 32    2 49999987


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      .+    .+  ...+++.++++|+|   ||++++..
T Consensus       149 ~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~  174 (240)
T 1xdz_A          149 AV----AR--LSVLSELCLPLVKK---NGLFVALK  174 (240)
T ss_dssp             CC----SC--HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred             cc----CC--HHHHHHHHHHhcCC---CCEEEEEe
Confidence            63    32  35899999999999   89998875

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.15  E-value=1.3e-10  Score=95.12  Aligned_cols=99  Identities=16%  Similarity=0.219  Sum_probs=79.3

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--Ccc
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PAD  257 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D  257 (307)
                      ++..+.  ..+..+|||+|||+|.++..+++  +..+++++|. +.+++.+++     ..++++++.+|+.++.+  .+|
T Consensus        27 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  102 (183)
T 2yxd_A           27 SIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN  102 (183)
T ss_dssp             HHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred             HHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence            344444  45667999999999999999999  7889999999 888888876     23689999999987544  599


Q ss_pred             EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +|++..+      .....+++++++.  |   ||++++....
T Consensus       103 ~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~~  133 (183)
T 2yxd_A          103 KAFIGGT------KNIEKIIEILDKK--K---INHIVANTIV  133 (183)
T ss_dssp             EEEECSC------SCHHHHHHHHHHT--T---CCEEEEEESC
T ss_pred             EEEECCc------ccHHHHHHHHhhC--C---CCEEEEEecc
Confidence            9999988      2235789999888  6   8999988743

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.14  E-value=1.3e-10  Score=100.30  Aligned_cols=95  Identities=17%  Similarity=0.155  Sum_probs=77.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHH----CCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC--C---C--CccEEEech
Q 037127          196 GLNSLVDVGGATGTVAKAIAKA----FPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA--I---P--PADAVVLKW  263 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~--~---p--~~D~i~~~~  263 (307)
                      +..+|||||||+|..+..+++.    +|+.+++++|+ +.+++.++...++|+++.+|+.+.  +   .  .||+|++..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            3569999999999999999998    78899999999 778877765567999999999873  1   2  489998766


Q ss_pred             hhccCChhHHHHHHHHHHH-hccCCCCCcEEEEEee
Q 037127          264 ILHDWNDEECVKILKKCKE-AITSNSKIGKVIIIDM  298 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~-~L~p~~~gg~lli~e~  298 (307)
                      . |.    +...+|+++++ .|+|   ||++++.+.
T Consensus       161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~  188 (236)
T 2bm8_A          161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM  188 (236)
T ss_dssp             S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred             c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence            5 52    34578999997 9999   899998663

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.14  E-value=1.5e-10  Score=99.60  Aligned_cols=101  Identities=18%  Similarity=0.241  Sum_probs=80.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP---  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p---  254 (307)
                      ..++..+.  ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++     ..+++++..+|+..+++   
T Consensus        81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (235)
T 1jg1_A           81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA  157 (235)
T ss_dssp             HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence            34444444  55677999999999999999999988 89999998 888888876     23569999999855544   


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      .||+|++..+++++++        ++.+.|+|   ||++++.-.
T Consensus       158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~  190 (235)
T 1jg1_A          158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG  190 (235)
T ss_dssp             CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred             CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence            3899999999998874        57788999   888887644

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.14  E-value=1.5e-10  Score=95.54  Aligned_cols=96  Identities=25%  Similarity=0.301  Sum_probs=79.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC---CCccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI---PPADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~---p~~D~i~~~~  263 (307)
                      ..+..+|||+|||+|.++..+++..  .+++++|. +.+++.+++      ..+++++..+|+.++.   +.+|+|++..
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  108 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG  108 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECC
Confidence            4567799999999999999999987  78999999 888888776      2268999999987632   4699999998


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      ++|++     ..+|++++++|+|   ||++++....
T Consensus       109 ~~~~~-----~~~l~~~~~~l~~---gG~l~~~~~~  136 (192)
T 1l3i_A          109 SGGEL-----QEILRIIKDKLKP---GGRIIVTAIL  136 (192)
T ss_dssp             CTTCH-----HHHHHHHHHTEEE---EEEEEEEECB
T ss_pred             chHHH-----HHHHHHHHHhcCC---CcEEEEEecC
Confidence            87643     5889999999999   8998887653

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.13  E-value=1.7e-10  Score=99.55  Aligned_cols=99  Identities=11%  Similarity=0.187  Sum_probs=74.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------cCCCeEEEecCCCC--C--CC--Cc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------DLANLKYVGGDMFE--A--IP--PA  256 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~~rv~~~~~d~~~--~--~p--~~  256 (307)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++           ...+|+++.+|+.+  +  ++  .+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            4566899999999999999999999999999999 778876653           24689999999986  2  33  48


Q ss_pred             cEEEechhhccCChh-H------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          257 DAVVLKWILHDWNDE-E------CVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       257 D~i~~~~vLh~~~~~-~------~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      |.|++...-. |... .      ...+|++++++|+|   ||++++..
T Consensus       125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t  168 (235)
T 3ckk_A          125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT  168 (235)
T ss_dssp             EEEEEESCC------------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence            9887643322 2211 0      13699999999999   89888763

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.13  E-value=1e-10  Score=99.67  Aligned_cols=99  Identities=12%  Similarity=0.095  Sum_probs=80.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C------CCcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I------PPAD  257 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~------p~~D  257 (307)
                      .+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++      ..++++++.+|+.+.   .      ..||
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            4567999999999999999999988 789999999 888888876      346899999998652   1      4599


Q ss_pred             EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +|++...     ......+++++.+.|+|   ||.+++-+..++
T Consensus       143 ~v~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~  178 (225)
T 3tr6_A          143 LIYIDAD-----KANTDLYYEESLKLLRE---GGLIAVDNVLRR  178 (225)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred             EEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence            9986443     33456899999999999   888888777654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.13  E-value=2.8e-10  Score=97.26  Aligned_cols=100  Identities=17%  Similarity=0.133  Sum_probs=80.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCCCC---Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEAIP---PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~~p---~~  256 (307)
                      ..++..+.  ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++   ...+++++.+|+.+..+   .|
T Consensus        60 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f  135 (231)
T 1vbf_A           60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY  135 (231)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence            34444444  4567799999999999999999986  68999999 888888876   12289999999987433   49


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      |+|++..++|++++        ++.+.|+|   ||++++...
T Consensus       136 D~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~  166 (231)
T 1vbf_A          136 DRVVVWATAPTLLC--------KPYEQLKE---GGIMILPIG  166 (231)
T ss_dssp             EEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred             cEEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEc
Confidence            99999999998874        47789999   899988764

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.13  E-value=1.2e-10  Score=98.43  Aligned_cols=86  Identities=16%  Similarity=0.202  Sum_probs=70.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDE  271 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~  271 (307)
                      .+..+|||||||+|.++..++     .+++++|+.+.         ++++..+|+.+ +.+  .||+|++..++| +++ 
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~-  129 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------DPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTN-  129 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------STTEEESCTTSCSCCTTCEEEEEEESCCC-SSC-
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------CceEEEeccccCCCCCCCEeEEEEehhcc-ccC-
Confidence            456789999999999998873     58999998432         57789999987 444  499999999998 444 


Q ss_pred             HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          272 ECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       272 ~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                       ...+|++++++|+|   ||+++|.+...
T Consensus       130 -~~~~l~~~~~~L~~---gG~l~i~~~~~  154 (215)
T 2zfu_A          130 -IRDFLEEANRVLKP---GGLLKVAEVSS  154 (215)
T ss_dssp             -HHHHHHHHHHHEEE---EEEEEEEECGG
T ss_pred             -HHHHHHHHHHhCCC---CeEEEEEEcCC
Confidence             46899999999999   99999988654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.13  E-value=2.2e-11  Score=113.72  Aligned_cols=106  Identities=13%  Similarity=0.123  Sum_probs=80.9

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC------CC--
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE------AI--  253 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~------~~--  253 (307)
                      ...+++.+.  ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.  .+......+..      ++  
T Consensus        96 ~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~  169 (416)
T 4e2x_A           96 ARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK--GIRVRTDFFEKATADDVRRTE  169 (416)
T ss_dssp             HHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT--TCCEECSCCSHHHHHHHHHHH
T ss_pred             HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc--CCCcceeeechhhHhhcccCC
Confidence            355666665  566789999999999999999987  458999999 7888888842  23333222221      12  


Q ss_pred             CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          254 PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       254 p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      ..||+|++.+++|++++.  ..+|++++++|+|   ||++++..+.
T Consensus       170 ~~fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~  210 (416)
T 4e2x_A          170 GPANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPY  210 (416)
T ss_dssp             CCEEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred             CCEEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCC
Confidence            259999999999999865  5899999999999   8998887553

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.12  E-value=2.1e-10  Score=98.09  Aligned_cols=101  Identities=18%  Similarity=0.171  Sum_probs=78.2

Q ss_pred             ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCC--CCCC--CccEEEech
Q 037127          194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMF--EAIP--PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~--~~~p--~~D~i~~~~  263 (307)
                      ..+..+|||+||| +|.++..+++.. +.+++++|+ +.+++.+++    ..-+++++.+|+.  .+.+  .||+|++.-
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence            4567899999999 999999999987 679999999 888888876    2338999999963  3444  599999886


Q ss_pred             hhccCChhH-----------------HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          264 ILHDWNDEE-----------------CVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       264 vLh~~~~~~-----------------~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ..+..++.+                 ...+|+++.+.|+|   ||+++++-+
T Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  180 (230)
T 3evz_A          132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLP  180 (230)
T ss_dssp             CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred             CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEec
Confidence            665443321                 26899999999999   899988643

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.12  E-value=2.5e-10  Score=97.94  Aligned_cols=95  Identities=13%  Similarity=0.128  Sum_probs=73.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC--C---C-CccEEEec
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA--I---P-PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~--~---p-~~D~i~~~  262 (307)
                      +.+..+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+.+   ...+++++.+|+.++  .   + .+|+|++.
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            4567799999999999999999986 7789999999 655444433   337899999999873  2   2 48999985


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      ..    ..+....++++++++|+|   ||+++|
T Consensus       155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i  180 (233)
T 2ipx_A          155 VA----QPDQTRIVALNAHTFLRN---GGHFVI  180 (233)
T ss_dssp             CC----CTTHHHHHHHHHHHHEEE---EEEEEE
T ss_pred             CC----CccHHHHHHHHHHHHcCC---CeEEEE
Confidence            43    223345779999999999   888887

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.12  E-value=5.2e-10  Score=101.80  Aligned_cols=105  Identities=16%  Similarity=0.193  Sum_probs=80.0

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC--
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP--  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p--  254 (307)
                      +.+.+...  ..+..+|||||||+|.++..+++. +..+++++|..++++.+++      ..++++++.+|+.+ +.|  
T Consensus        54 ~~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  130 (340)
T 2fyt_A           54 DFIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE  130 (340)
T ss_dssp             HHHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred             HHHHhhhh--hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCC
Confidence            33444333  456779999999999999999987 4568999999668888776      24799999999987 555  


Q ss_pred             CccEEEechhhccC-ChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127          255 PADAVVLKWILHDW-NDEECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       255 ~~D~i~~~~vLh~~-~~~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      .+|+|++..+.+.+ .......+|+++++.|+|   ||+++
T Consensus       131 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~li  168 (340)
T 2fyt_A          131 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAK---GGSVY  168 (340)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred             cEEEEEEcCchhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence            49999987743332 223346799999999999   88876

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.12  E-value=3.5e-10  Score=104.40  Aligned_cols=97  Identities=14%  Similarity=0.149  Sum_probs=81.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC-CC--CccEEEechhhcc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA-IP--PADAVVLKWILHD  267 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~-~p--~~D~i~~~~vLh~  267 (307)
                      +..+|||+|||+|.++..+++.  +.+++++|. +.+++.+++    ..-+++++.+|+.+. .+  .||+|++.-++|.
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence            5679999999999999999998  569999999 888888876    333599999999983 33  5999999999886


Q ss_pred             ---CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          268 ---WNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       268 ---~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                         ...+....+++++++.|+|   ||+++|+.
T Consensus       311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~  340 (381)
T 3dmg_A          311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS  340 (381)
T ss_dssp             TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence               3345667999999999999   89998864

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.11  E-value=1.7e-10  Score=106.48  Aligned_cols=102  Identities=12%  Similarity=0.126  Sum_probs=81.0

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWIL  265 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vL  265 (307)
                      ..+..+|||||||+|.++..++++. ..+++++|...+++.+++      ..++|+++.+|+.+ +.| .+|+|++..+.
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~  139 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG  139 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence            4567899999999999999999973 348999999877777765      45789999999987 454 59999997766


Q ss_pred             ccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          266 HDWND-EECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       266 h~~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      |.... .....+++++.+.|+|   ||.+++.+..
T Consensus       140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~  171 (376)
T 3r0q_C          140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR  171 (376)
T ss_dssp             TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred             hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence            65543 3356789999999999   8888765543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.11  E-value=1.2e-10  Score=101.42  Aligned_cols=95  Identities=16%  Similarity=0.104  Sum_probs=78.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CC-----CCccEEEec
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AI-----PPADAVVLK  262 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~-----p~~D~i~~~  262 (307)
                      ....+|||||||+|..+..++..+|+.+++++|. +.+++.+++     ...+|+++++|+.+ +.     ..||+|+++
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            4567999999999999999999999999999999 888888876     34569999999876 22     259999987


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      .+-    +  ...+++.+.+.|+|   ||+++++..
T Consensus       159 a~~----~--~~~ll~~~~~~Lkp---gG~l~~~~g  185 (249)
T 3g89_A          159 AVA----P--LCVLSELLLPFLEV---GGAAVAMKG  185 (249)
T ss_dssp             SSC----C--HHHHHHHHGGGEEE---EEEEEEEEC
T ss_pred             CcC----C--HHHHHHHHHHHcCC---CeEEEEEeC
Confidence            542    2  24789999999999   999988764

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.11  E-value=2.6e-10  Score=97.35  Aligned_cols=94  Identities=9%  Similarity=0.057  Sum_probs=78.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC---CccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP---PADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p---~~D~i~~~~v  264 (307)
                      .+..+|+|||||+|..+..+++..|..+++++|+ +..++.|++      ..++|++..+|.+++++   .||+|++..+
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~   93 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM   93 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence            4567999999999999999999999999999999 788888876      45789999999998665   4999987765


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      .    .+-...+|..+.+.|++   +|++++
T Consensus        94 G----g~~i~~Il~~~~~~L~~---~~~lVl  117 (225)
T 3kr9_A           94 G----GRLIARILEEGLGKLAN---VERLIL  117 (225)
T ss_dssp             C----HHHHHHHHHHTGGGCTT---CCEEEE
T ss_pred             C----hHHHHHHHHHHHHHhCC---CCEEEE
Confidence            3    23356899999999998   777665

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.10  E-value=3.1e-10  Score=98.56  Aligned_cols=105  Identities=18%  Similarity=0.207  Sum_probs=85.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh----c--CCCeEEEecCCCCC-CC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES----D--LANLKYVGGDMFEA-IP  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~----~--~~rv~~~~~d~~~~-~p  254 (307)
                      ..++..++  ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++    .  .+++++..+|+.+. ++
T Consensus        86 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~  163 (258)
T 2pwy_A           86 SAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE  163 (258)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred             HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence            34555555  566789999999999999999998 67889999999 888888876    2  26899999999874 55


Q ss_pred             --CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          255 --PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       255 --~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                        .+|+|++     ++++.  ..+|+++.++|+|   ||+++++.+..
T Consensus       164 ~~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~  201 (258)
T 2pwy_A          164 EAAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAYLPNI  201 (258)
T ss_dssp             TTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESCH
T ss_pred             CCCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCCH
Confidence              4999997     34544  3789999999999   99999988653

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.10  E-value=2.9e-10  Score=97.17  Aligned_cols=95  Identities=11%  Similarity=0.108  Sum_probs=76.6

Q ss_pred             CeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cC-CCeEEEecCCCC---CC-C-CccEEEech
Q 037127          198 NSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DL-ANLKYVGGDMFE---AI-P-PADAVVLKW  263 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~-~rv~~~~~d~~~---~~-p-~~D~i~~~~  263 (307)
                      .+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++      .. ++|+++.+|..+   .. + .||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            3999999999999999999875 789999999 888888876      23 689999999866   23 2 599998764


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ..     .....+++.+.+.|+|   ||.+++-+..+
T Consensus       138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn~~~  166 (221)
T 3dr5_A          138 SP-----MDLKALVDAAWPLLRR---GGALVLADALL  166 (221)
T ss_dssp             CT-----TTHHHHHHHHHHHEEE---EEEEEETTTTG
T ss_pred             cH-----HHHHHHHHHHHHHcCC---CcEEEEeCCCC
Confidence            32     2335789999999999   78877766655

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.10  E-value=4.8e-10  Score=95.72  Aligned_cols=96  Identities=16%  Similarity=0.190  Sum_probs=75.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC-----CC-CccEEEec
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA-----IP-PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~-----~p-~~D~i~~~  262 (307)
                      ..+..+|||+|||+|.++..+++.. |+.+++++|. +.+++.+.+   ..++++++.+|+.+.     .+ .+|+|++.
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            4566799999999999999999885 6679999999 767766654   337899999999872     23 49999965


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ..    .......++++++++|+|   ||++++.
T Consensus       151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~  177 (227)
T 1g8a_A          151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA  177 (227)
T ss_dssp             CC----STTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             CC----CHhHHHHHHHHHHHhcCC---CCEEEEE
Confidence            43    222334569999999999   8998887

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.09  E-value=1.8e-10  Score=103.20  Aligned_cols=100  Identities=13%  Similarity=0.071  Sum_probs=77.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCCC----CC-CccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFEA----IP-PADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~~----~p-~~D~i  259 (307)
                      .++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .        .+|++++.+|+.+.    .+ .||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            4567999999999999999999878889999999 888888876 2        47899999998761    12 49999


Q ss_pred             EechhhccCChhHH--HHHHHHHHHhccCCCCCcEEEEEe
Q 037127          260 VLKWILHDWNDEEC--VKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       260 ~~~~vLh~~~~~~~--~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ++....+.++....  ..++++++++|+|   ||++++..
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~  210 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQG  210 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEec
Confidence            99877776654432  5889999999999   88888764

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.09  E-value=1e-10  Score=101.41  Aligned_cols=100  Identities=14%  Similarity=0.198  Sum_probs=80.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC--C-C------CCcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--A-I------PPAD  257 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~-~------p~~D  257 (307)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      ..++|+++.+|+.+  + .      ..||
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            4567999999999999999999986 789999999 777777765      34699999999876  2 2      3599


Q ss_pred             EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +|++...     ......+|+++.+.|+|   ||.+++-+..+..
T Consensus       139 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~g  175 (242)
T 3r3h_A          139 FIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWDG  175 (242)
T ss_dssp             EEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSSS
T ss_pred             EEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccCC
Confidence            9988653     33346789999999999   8888887766543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.09  E-value=1.6e-10  Score=100.16  Aligned_cols=94  Identities=17%  Similarity=0.263  Sum_probs=73.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c---------CCCeEEEecCCCCC----CC--
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D---------LANLKYVGGDMFEA----IP--  254 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~---------~~rv~~~~~d~~~~----~p--  254 (307)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++    .         .++++++.+|+.+.    ++  
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence            4567899999999999999999999999999999 778877754    1         25899999999873    32  


Q ss_pred             CccEEEechhhccCChhHH-----------HHHHHHHHHhccCCCCCcEEEEE
Q 037127          255 PADAVVLKWILHDWNDEEC-----------VKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~-----------~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .+|.|++.     +++...           ..+++++.++|+|   ||.+++.
T Consensus       128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~  172 (246)
T 2vdv_E          128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI  172 (246)
T ss_dssp             CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred             ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence            36766632     233211           3799999999999   8988885

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.09  E-value=1.5e-10  Score=97.82  Aligned_cols=98  Identities=14%  Similarity=0.136  Sum_probs=78.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC--CC-CCccEEEech
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--AI-PPADAVVLKW  263 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~~-p~~D~i~~~~  263 (307)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      ..++++++.+|..+  +. ++||+|++..
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  134 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC  134 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence            3567999999999999999999988 789999999 888888875      34689999999865  22 2399998863


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      .     ......+++++++.|+|   ||.+++.+..+
T Consensus       135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~  163 (210)
T 3c3p_A          135 D-----VFNGADVLERMNRCLAK---NALLIAVNALR  163 (210)
T ss_dssp             T-----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred             C-----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence            2     22346899999999999   88887766544

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.09  E-value=4.4e-10  Score=101.20  Aligned_cols=101  Identities=14%  Similarity=0.237  Sum_probs=81.4

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC---C
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI---P  254 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~---p  254 (307)
                      .++..+.  ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++     ..++++++.+|+.+..   .
T Consensus        66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~  143 (317)
T 1dl5_A           66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (317)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence            3444444  55678999999999999999999887 478999999 888888876     2356999999998732   2


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      .||+|++..++|+++        +++.+.|+|   ||++++...
T Consensus       144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~  176 (317)
T 1dl5_A          144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN  176 (317)
T ss_dssp             CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred             CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence            599999999999887        457789999   899888753

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.08  E-value=4.1e-10  Score=101.97  Aligned_cols=97  Identities=14%  Similarity=0.208  Sum_probs=76.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~v  264 (307)
                      ..+..+|||||||+|.++..+++. +..+++++|.+++++.+++      ..++|+++.+|+.+ +.|  .+|+|++..+
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  114 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence            345679999999999999999886 4568999999768877765      35789999999987 455  4999998866


Q ss_pred             hccCC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 037127          265 LHDWN-DEECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       265 Lh~~~-~~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      .|.+. ......+|+++.+.|+|   ||+++
T Consensus       115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li  142 (328)
T 1g6q_1          115 GYFLLYESMMDTVLYARDHYLVE---GGLIF  142 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             hhhcccHHHHHHHHHHHHhhcCC---CeEEE
Confidence            55432 22345789999999999   88876

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.08  E-value=4.5e-10  Score=98.30  Aligned_cols=94  Identities=14%  Similarity=0.228  Sum_probs=79.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND  270 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~  270 (307)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++...++.+..+|+.+ +++  .+|+|++..+.     
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-----  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-----  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence            4567999999999999999999988899999999 88888888755789999999976 444  49999986552     


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          271 EECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                          ..+++++++|+|   ||+++++.+..
T Consensus       159 ----~~l~~~~~~L~p---gG~l~~~~~~~  181 (269)
T 1p91_A          159 ----CKAEELARVVKP---GGWVITATPGP  181 (269)
T ss_dssp             ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred             ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence                348999999999   99999987653

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.08  E-value=4.9e-10  Score=97.86  Aligned_cols=99  Identities=10%  Similarity=0.111  Sum_probs=77.8

Q ss_pred             cc-CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---CC--CccEEE
Q 037127          194 FE-GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---IP--PADAVV  260 (307)
Q Consensus       194 ~~-~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~p--~~D~i~  260 (307)
                      .. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.+++      ..+|++++.+|+.+.   ++  .||+|+
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            44 6789999999999999999999776 9999999 888888876      356899999999872   32  499999


Q ss_pred             echhhccC------------------ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          261 LKWILHDW------------------NDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       261 ~~~vLh~~------------------~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +.-..+..                  .......+++.+.+.|+|   ||+++++
T Consensus       125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~  175 (259)
T 3lpm_A          125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFV  175 (259)
T ss_dssp             ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEE
Confidence            96443221                  112345799999999999   8999885

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.08  E-value=4.4e-10  Score=99.11  Aligned_cols=104  Identities=18%  Similarity=0.231  Sum_probs=84.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC-
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP-  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p-  254 (307)
                      ..++..++  ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++      ..+++++..+|+.+.++ 
T Consensus       102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  179 (277)
T 1o54_A          102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE  179 (277)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred             HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence            34455555  566789999999999999999999 67899999999 888888876      12689999999988654 


Q ss_pred             -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                       .+|+|++     +.++.  ..+|+++.++|+|   ||++++..+.
T Consensus       180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~  215 (277)
T 1o54_A          180 KDVDALFL-----DVPDP--WNYIDKCWEALKG---GGRFATVCPT  215 (277)
T ss_dssp             CSEEEEEE-----CCSCG--GGTHHHHHHHEEE---EEEEEEEESS
T ss_pred             CccCEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence             4999987     34444  3789999999999   8999988764

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.08  E-value=4.1e-10  Score=97.06  Aligned_cols=100  Identities=16%  Similarity=0.175  Sum_probs=80.0

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C---------
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I---------  253 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~---------  253 (307)
                      ..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++      ..++++++.+|+.+.   .         
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            34577999999999999999999987 689999999 888888876      235799999998651   1         


Q ss_pred             --------CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          254 --------PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       254 --------p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                              ..||+|++...     .+....+++++.+.|+|   ||++++.+..++
T Consensus       138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~  185 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKP---GGLLIADNVLWD  185 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred             cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCC---CeEEEEEccccC
Confidence                    35999988743     33445889999999999   888888775554

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.07  E-value=1.2e-09  Score=93.86  Aligned_cols=97  Identities=15%  Similarity=0.209  Sum_probs=77.3

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC--CC----CccEEEec
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA--IP----PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~--~p----~~D~i~~~  262 (307)
                      ++++.+|||+|||+|.++..+++.. |+-+++++|. +.+++.+++   ...++..+.+|...+  .+    .+|++++.
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d  154 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD  154 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence            6778999999999999999999874 8889999999 888888876   346799999998773  12    37887653


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                        +++..  +...++++++++|||   ||+++|..
T Consensus       155 --~~~~~--~~~~~l~~~~r~LKp---GG~lvI~i  182 (233)
T 4df3_A          155 --VAQPE--QAAIVVRNARFFLRD---GGYMLMAI  182 (233)
T ss_dssp             --CCCTT--HHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             --ccCCh--hHHHHHHHHHHhccC---CCEEEEEE
Confidence              22222  235789999999999   99999864

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.07  E-value=5.9e-10  Score=90.44  Aligned_cols=99  Identities=14%  Similarity=0.230  Sum_probs=79.3

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEecCCCC-C--------CC--CccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGGDMFE-A--------IP--PADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~-~--------~p--~~D~i~~  261 (307)
                      ..+..+|||+|||+|.++..+++.+ |+.+++++|+.+++   .  ..++++..+|+.+ +        .+  .+|+|++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~---~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~   94 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD---P--IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS   94 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC---C--CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccc---c--cCcEEEEEcccccchhhhhhhccCCCCceeEEEE
Confidence            3456799999999999999999995 77899999995532   1  2689999999987 3        44  4999999


Q ss_pred             chhhccCChhH---------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          262 KWILHDWNDEE---------CVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       262 ~~vLh~~~~~~---------~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ..++|......         ...+++++.+.|+|   ||++++.....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~  139 (180)
T 1ej0_A           95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVFQG  139 (180)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEESS
T ss_pred             CCCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEecC
Confidence            99888665431         15889999999999   89998876543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.07  E-value=1.9e-10  Score=93.25  Aligned_cols=95  Identities=11%  Similarity=0.006  Sum_probs=72.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC-------CccEEEech
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP-------PADAVVLKW  263 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p-------~~D~i~~~~  263 (307)
                      ...+|||+|||+|.++..+++..+.  ++++|+ +.+++.+++    ..-+++++.+|+.+..+       .+|+|++..
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            5678999999999999999998765  999999 888888876    11289999999876211       599999998


Q ss_pred             hhccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeee
Q 037127          264 ILHDWNDEECVKILKKCK--EAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~--~~L~p~~~gg~lli~e~~  299 (307)
                      ++| -..+   .+++.+.  ++|+|   ||++++....
T Consensus       119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~~  149 (171)
T 1ws6_A          119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHPK  149 (171)
T ss_dssp             CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEET
T ss_pred             CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeCC
Confidence            876 2222   3455555  99999   8887775543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.06  E-value=1.3e-09  Score=90.95  Aligned_cols=103  Identities=14%  Similarity=0.154  Sum_probs=77.0

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCC--CCeEEEecchHHHHhchhcCCCeEEEecCCCCC-----------
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP--NLECTDFDLPHVVNGLESDLANLKYVGGDMFEA-----------  252 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p--~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~-----------  252 (307)
                      +.+.+. .+.+..+|||||||+|.++..+++.+|  +.+++++|+.++   +  ..++++++.+|+.+.           
T Consensus        13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~---~--~~~~v~~~~~d~~~~~~~~~~~~~~i   86 (201)
T 2plw_A           13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM---D--PIPNVYFIQGEIGKDNMNNIKNINYI   86 (201)
T ss_dssp             HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC---C--CCTTCEEEECCTTTTSSCCC------
T ss_pred             HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc---C--CCCCceEEEccccchhhhhhcccccc
Confidence            344443 135567999999999999999999998  689999999552   1  245799999999873           


Q ss_pred             ---------------CC--CccEEEechhhccCC----hhH-----HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          253 ---------------IP--PADAVVLKWILHDWN----DEE-----CVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       253 ---------------~p--~~D~i~~~~vLh~~~----~~~-----~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                                     ++  .||+|++...+|...    +..     ...+|+.++++|+|   ||++++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~  154 (201)
T 2plw_A           87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM  154 (201)
T ss_dssp             -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence                           24  489999988776431    211     12489999999999   88887743

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.04  E-value=2.1e-10  Score=98.02  Aligned_cols=87  Identities=9%  Similarity=0.138  Sum_probs=73.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC--CCC---CccEEEechhhccC
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE--AIP---PADAVVLKWILHDW  268 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~--~~p---~~D~i~~~~vLh~~  268 (307)
                      .+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++..++++++++|+.+  +++   .||+|++.      
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------  118 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------  118 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence            45679999999999999999998  679999999 88899888766789999999976  333   49999987      


Q ss_pred             ChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127          269 NDEECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      .+  ...+|++++++|+|   ||+++
T Consensus       119 ~~--~~~~l~~~~~~Lkp---gG~l~  139 (226)
T 3m33_A          119 RG--PTSVILRLPELAAP---DAHFL  139 (226)
T ss_dssp             SC--CSGGGGGHHHHEEE---EEEEE
T ss_pred             CC--HHHHHHHHHHHcCC---CcEEE
Confidence            12  24789999999999   88887

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.04  E-value=3.2e-10  Score=92.91  Aligned_cols=98  Identities=10%  Similarity=-0.008  Sum_probs=75.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C-CCccEEEech
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I-PPADAVVLKW  263 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~-p~~D~i~~~~  263 (307)
                      ....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++      ..++++++.+|+.+.   . ..||+|++..
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~  108 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP  108 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence            35679999999999999999987 6679999999 888888876      235799999998772   2 2599999886


Q ss_pred             hhccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeee
Q 037127          264 ILHDWNDEECVKILKKCK--EAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~--~~L~p~~~gg~lli~e~~  299 (307)
                      ..|.   .....+++.+.  ++|+|   ||.+++....
T Consensus       109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~  140 (177)
T 2esr_A          109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETDK  140 (177)
T ss_dssp             SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEET
T ss_pred             CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECC
Confidence            6542   22345666666  88998   8888776544

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.04  E-value=4.8e-10  Score=97.40  Aligned_cols=98  Identities=12%  Similarity=0.086  Sum_probs=79.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC--C-C-------CCc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--A-I-------PPA  256 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~-~-------p~~  256 (307)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      ..++|+++.+|..+  + .       ..|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            4567999999999999999999988 789999999 888888876      34689999999865  2 2       359


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      |+|++...     ......+++.+.+.|+|   ||.+++-+..+
T Consensus       158 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~  193 (247)
T 1sui_A          158 DFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLW  193 (247)
T ss_dssp             SEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred             EEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence            99988643     22346889999999999   88888766544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.04  E-value=5.2e-10  Score=92.13  Aligned_cols=98  Identities=11%  Similarity=-0.028  Sum_probs=75.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-------CCCccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-------IPPADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-------~p~~D~i~  260 (307)
                      ....+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++      ..++++++.+|+.+.       ...||+|+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~  121 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  121 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence            3567999999999999999888 45679999999 888888876      236899999999772       22599999


Q ss_pred             echhhccCChhHHHHHHHHH--HHhccCCCCCcEEEEEeee
Q 037127          261 LKWILHDWNDEECVKILKKC--KEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~--~~~L~p~~~gg~lli~e~~  299 (307)
                      +..+.|....+   ..++.+  .+.|+|   ||.+++....
T Consensus       122 ~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~~~~  156 (187)
T 2fhp_A          122 LDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCETDK  156 (187)
T ss_dssp             ECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEEEET
T ss_pred             ECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEEeCC
Confidence            98876533333   445555  788998   8888776543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.03  E-value=4.1e-10  Score=98.22  Aligned_cols=96  Identities=20%  Similarity=0.364  Sum_probs=76.5

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVVLKWILHD  267 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~  267 (307)
                      .+..+|||+|||+|.++..+++..+  +++++|+ |.+++.+++    ..-.+++..+|+.+.++  .||+|++....| 
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~-  195 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE-  195 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence            4567999999999999999998765  9999999 888888776    11128999999877443  599999865544 


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                          ....+++++++.|+|   ||++++.+...
T Consensus       196 ----~~~~~l~~~~~~Lkp---gG~lils~~~~  221 (254)
T 2nxc_A          196 ----LHAALAPRYREALVP---GGRALLTGILK  221 (254)
T ss_dssp             ----HHHHHHHHHHHHEEE---EEEEEEEEEEG
T ss_pred             ----HHHHHHHHHHHHcCC---CCEEEEEeecc
Confidence                246899999999999   89998876554

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.02  E-value=5.9e-10  Score=95.15  Aligned_cols=100  Identities=16%  Similarity=0.221  Sum_probs=80.2

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C------CCc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I------PPA  256 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~------p~~  256 (307)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      ..++++++.+|+.+.   .      ..|
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            34567999999999999999999987 789999999 888888876      347899999998652   1      459


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      |+|++...     ......+++++.+.|+|   ||.+++.+..+.
T Consensus       147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~  183 (229)
T 2avd_A          147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLWR  183 (229)
T ss_dssp             EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSGG
T ss_pred             cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCcC
Confidence            99988543     33346889999999999   888888776543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.02  E-value=7.4e-10  Score=97.89  Aligned_cols=96  Identities=11%  Similarity=0.036  Sum_probs=78.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC-C-CccEEEechhh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI-P-PADAVVLKWIL  265 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~-p-~~D~i~~~~vL  265 (307)
                      .+..+|||+|||+|.++..+++..+. +++++|+ |.+++.+++      ..++++++++|+.+.. + .||+|++... 
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p-  201 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV-  201 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc-
Confidence            45679999999999999999999876 8999999 888888876      3567999999999843 3 5999988533 


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                          . ....+++++.++|+|   ||++++.+...
T Consensus       202 ----~-~~~~~l~~~~~~Lkp---gG~l~~~~~~~  228 (278)
T 2frn_A          202 ----V-RTHEFIPKALSIAKD---GAIIHYHNTVP  228 (278)
T ss_dssp             ----S-SGGGGHHHHHHHEEE---EEEEEEEEEEE
T ss_pred             ----h-hHHHHHHHHHHHCCC---CeEEEEEEeec
Confidence                1 124789999999999   89999887764

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.02  E-value=1.3e-09  Score=95.91  Aligned_cols=104  Identities=14%  Similarity=0.248  Sum_probs=82.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh----c----CCCeEEEecCCCC-C
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES----D----LANLKYVGGDMFE-A  252 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~----~----~~rv~~~~~d~~~-~  252 (307)
                      ..++..++  .....+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++    .    .++++++.+|+.+ +
T Consensus        89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE  166 (280)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence            34555555  566779999999999999999986 57889999999 888888876    2    3689999999987 3


Q ss_pred             CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          253 IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       253 ~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .+  .+|+|++     +.++.  ..+|+++.++|+|   ||++++..+.
T Consensus       167 ~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~  205 (280)
T 1i9g_A          167 LPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVA---GGVLMVYVAT  205 (280)
T ss_dssp             CCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESS
T ss_pred             CCCCceeEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCC
Confidence            43  4999988     23333  2789999999999   8999998764

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.01  E-value=1.2e-09  Score=93.49  Aligned_cols=95  Identities=8%  Similarity=-0.013  Sum_probs=77.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC---CccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP---PADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p---~~D~i~~~~v  264 (307)
                      .+..+|+|||||+|..+..+++..|..+++++|+ +..++.|++      ..++|++..+|.++..+   .+|+|++.++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM   99 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence            4567999999999999999999998889999999 888888876      46789999999998543   4999987765


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .-    +-...+|....+.|++   +|++++.
T Consensus       100 Gg----~lI~~IL~~~~~~l~~---~~~lIlq  124 (230)
T 3lec_A          100 GG----RLIADILNNDIDKLQH---VKTLVLQ  124 (230)
T ss_dssp             CH----HHHHHHHHHTGGGGTT---CCEEEEE
T ss_pred             ch----HHHHHHHHHHHHHhCc---CCEEEEE
Confidence            43    3356888888888887   6766654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.00  E-value=4e-09  Score=90.87  Aligned_cols=101  Identities=15%  Similarity=0.177  Sum_probs=80.9

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC-C--
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI-P--  254 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~-p--  254 (307)
                      .++..++  .....+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++      ..+++++..+|+.+.. +  
T Consensus        82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  157 (248)
T 2yvl_A           82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG  157 (248)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred             HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence            3444444  556789999999999999999998  679999999 888888876      2378999999999865 4  


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .+|+|++     +.++.  ..+|+++.++|+|   ||++++..+.
T Consensus       158 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~  192 (248)
T 2yvl_A          158 IFHAAFV-----DVREP--WHYLEKVHKSLME---GAPVGFLLPT  192 (248)
T ss_dssp             CBSEEEE-----CSSCG--GGGHHHHHHHBCT---TCEEEEEESS
T ss_pred             cccEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence            4999987     23333  3779999999999   9999988764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.00  E-value=1.9e-09  Score=91.95  Aligned_cols=94  Identities=17%  Similarity=0.189  Sum_probs=77.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEecc-hHHHHhchh-----c-----CCCeEEEecCCCCCC----
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-----PNLECTDFDL-PHVVNGLES-----D-----LANLKYVGGDMFEAI----  253 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~Dl-~~~~~~a~~-----~-----~~rv~~~~~d~~~~~----  253 (307)
                      ..+..+|||||||+|.++..+++..     |..+++++|. +.+++.+++     .     .++++++.+|+.+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            4456799999999999999999987     5679999999 888888876     2     478999999998743    


Q ss_pred             C---CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          254 P---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       254 p---~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +   .||+|++...+|++        ++++.+.|+|   ||++++.-.
T Consensus       158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~  194 (227)
T 2pbf_A          158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIE  194 (227)
T ss_dssp             HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEc
Confidence            2   49999999998864        4677889999   898887654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.00  E-value=5.3e-11  Score=103.55  Aligned_cols=99  Identities=10%  Similarity=-0.000  Sum_probs=69.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCC----CCCC-----CccEE
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMF----EAIP-----PADAV  259 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~----~~~p-----~~D~i  259 (307)
                      +..+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++      ..++++++.+|+.    ++++     .||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            467999999999999999999988899999999 888888876      3457999999953    3333     49999


Q ss_pred             EechhhccCCh-------------hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          260 VLKWILHDWND-------------EECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       260 ~~~~vLh~~~~-------------~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ++.-..|....             +....++.+++++|+|   ||++.+++
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~  192 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVK  192 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHH---HTHHHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEH
Confidence            99866554331             0112456677777777   67665544

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.00  E-value=5.1e-10  Score=94.07  Aligned_cols=97  Identities=13%  Similarity=0.125  Sum_probs=74.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cC--CCeEEEecCCCC--C-C--CC-ccEEEe
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DL--ANLKYVGGDMFE--A-I--PP-ADAVVL  261 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~--~rv~~~~~d~~~--~-~--p~-~D~i~~  261 (307)
                      +..+|||+|||+|.++..+++... .+++++|+ +.+++.+++     ..  ++++++.+|+.+  + .  .. ||+|++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            456899999999999999887643 58999999 888888876     22  689999999876  2 1  25 999999


Q ss_pred             chhhccCChhHHHHHHHHH--HHhccCCCCCcEEEEEeee
Q 037127          262 KWILHDWNDEECVKILKKC--KEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       262 ~~vLh~~~~~~~~~~L~~~--~~~L~p~~~gg~lli~e~~  299 (307)
                      ...+| ..  ....+++.+  .+.|+|   ||.+++....
T Consensus       132 ~~~~~-~~--~~~~~l~~~~~~~~Lkp---gG~l~i~~~~  165 (201)
T 2ift_A          132 DPPFH-FN--LAEQAISLLCENNWLKP---NALIYVETEK  165 (201)
T ss_dssp             CCCSS-SC--HHHHHHHHHHHTTCEEE---EEEEEEEEES
T ss_pred             CCCCC-Cc--cHHHHHHHHHhcCccCC---CcEEEEEECC
Confidence            87755 33  345778888  557999   8888776554

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.99  E-value=1.4e-09  Score=93.86  Aligned_cols=95  Identities=12%  Similarity=0.103  Sum_probs=78.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC---CccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP---PADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p---~~D~i~~~~v  264 (307)
                      .+..+|+|||||+|.++..+++..|..+++++|+ +..++.|++      ..++|++..+|.++..+   .||+|++.++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence            4567999999999999999999998889999999 888888876      46789999999998544   3999987655


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .-    +-...+|....+.|++   ++++++.
T Consensus       100 Gg----~lI~~IL~~~~~~L~~---~~~lIlq  124 (244)
T 3gnl_A          100 GG----TLIRTILEEGAAKLAG---VTKLILQ  124 (244)
T ss_dssp             CH----HHHHHHHHHTGGGGTT---CCEEEEE
T ss_pred             ch----HHHHHHHHHHHHHhCC---CCEEEEE
Confidence            42    3356889999999987   6776665

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.99  E-value=9.7e-10  Score=94.80  Aligned_cols=97  Identities=13%  Similarity=0.111  Sum_probs=77.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC--C-C-------CCc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--A-I-------PPA  256 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~-~-------p~~  256 (307)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      ..++|+++.+|..+  + .       ..|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            4567999999999999999999988 789999999 888888876      34589999999875  1 2       259


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      |+|++..     +......+++.+.+.|+|   ||.+++-+..
T Consensus       149 D~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d~~~  183 (237)
T 3c3y_A          149 DFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYDNTL  183 (237)
T ss_dssp             EEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECTT
T ss_pred             CEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEecCC
Confidence            9998753     233457899999999999   7777665543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.98  E-value=6.9e-10  Score=98.00  Aligned_cols=98  Identities=15%  Similarity=0.076  Sum_probs=77.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCCC---CC-CccEEEe
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFEA---IP-PADAVVL  261 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~~---~p-~~D~i~~  261 (307)
                      .+.+|||||||+|..+..+++..|..+++++|+ |.+++.+++ .        .+|++++.+|..+.   .+ .||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            467999999999999999999877789999999 889988876 2        47999999998762   22 5999998


Q ss_pred             chhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 037127          262 KWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       262 ~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ....+..+...  ...+++.++++|+|   ||.+++.
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~  188 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ  188 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            65544332211  24789999999999   7877765

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.98  E-value=6.1e-10  Score=96.23  Aligned_cols=100  Identities=15%  Similarity=0.070  Sum_probs=85.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVVLKWILHD  267 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~  267 (307)
                      ..+.+|||||||.|-++..+...+|+.+++++|+ +.+++.++.    ...+.++...|+..+.|  .+|++++.-++|+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~  210 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC  210 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence            4578999999999999999999999999999999 888888877    46668999999998544  5999999999999


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +.+++-...+ ++.++|++   +|.++-++.
T Consensus       211 Le~q~kg~g~-~ll~aL~~---~~vvVSfp~  237 (281)
T 3lcv_B          211 LETQQRGSGW-EVIDIVNS---PNIVVTFPT  237 (281)
T ss_dssp             HHHHSTTHHH-HHHHHSSC---SEEEEEEEC
T ss_pred             hhhhhhHHHH-HHHHHhCC---CCEEEeccc
Confidence            9887655666 89999998   666666655

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.98  E-value=8.7e-10  Score=97.72  Aligned_cols=100  Identities=12%  Similarity=0.062  Sum_probs=79.8

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCCC---CC-CccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFEA---IP-PADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~~---~p-~~D~i~  260 (307)
                      ..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .        .+|++++.+|+.+.   .+ .||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            4567999999999999999999888889999999 888888876 1        47999999998762   23 599999


Q ss_pred             echhhccCChhHH--HHHHHHHHHhccCCCCCcEEEEEe
Q 037127          261 LKWILHDWNDEEC--VKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       261 ~~~vLh~~~~~~~--~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      +....+..+....  ..++++++++|+|   ||.+++..
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~~  192 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQC  192 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEEC
Confidence            8655443233222  5899999999999   88887763

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.98  E-value=9.5e-10  Score=93.94  Aligned_cols=93  Identities=18%  Similarity=0.257  Sum_probs=76.5

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC------CCeEEEecc-hHHHHhchh-----c-----CCCeEEEecCCCCCCC--
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP------NLECTDFDL-PHVVNGLES-----D-----LANLKYVGGDMFEAIP--  254 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p------~~~~~~~Dl-~~~~~~a~~-----~-----~~rv~~~~~d~~~~~p--  254 (307)
                      ..+..+|||||||+|.++..+++..+      ..+++++|+ +.+++.+++     .     .++++++.+|..++.+  
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  161 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence            44567999999999999999998765      368999999 888888876     1     5689999999987543  


Q ss_pred             -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                       .||+|++...+|+++        +++.+.|+|   ||++++.-
T Consensus       162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~  194 (227)
T 1r18_A          162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV  194 (227)
T ss_dssp             CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred             CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence             499999999998765        567889999   88888753

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.98  E-value=2.7e-09  Score=97.53  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=83.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CC--
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AI--  253 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~--  253 (307)
                      ..++....  +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.|++     ..++++|..+|+.+ +.  
T Consensus       193 ~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~  270 (354)
T 3tma_A          193 QALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF  270 (354)
T ss_dssp             HHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred             HHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence            44444444  4567799999999999999999988 8899999999 888988876     22389999999988 32  


Q ss_pred             CCccEEEechhhccC-Ch-hH----HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          254 PPADAVVLKWILHDW-ND-EE----CVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       254 p~~D~i~~~~vLh~~-~~-~~----~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +.+|+|++.-..+.. .+ .+    -..+++.+++.|+|   ||+++++..
T Consensus       271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t~  318 (354)
T 3tma_A          271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLTL  318 (354)
T ss_dssp             CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEES
T ss_pred             CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence            348999986544321 11 11    25789999999998   899998764

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.98  E-value=3.9e-09  Score=93.34  Aligned_cols=98  Identities=18%  Similarity=0.160  Sum_probs=74.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc--hHHHHhchh-c-----C---------CCeEEEecCCCCC---C-
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL--PHVVNGLES-D-----L---------ANLKYVGGDMFEA---I-  253 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~-~-----~---------~rv~~~~~d~~~~---~-  253 (307)
                      ....+|||||||+|.++..+++.. ..+++++|+  +.+++.+++ .     .         +++++...|..+.   . 
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  156 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ  156 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence            456799999999999999888863 348999999  577777765 1     1         4788887665542   1 


Q ss_pred             -----CCccEEEechhhccCChhHHHHHHHHHHHhcc---CCCCCcEEEEE
Q 037127          254 -----PPADAVVLKWILHDWNDEECVKILKKCKEAIT---SNSKIGKVIII  296 (307)
Q Consensus       254 -----p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~---p~~~gg~lli~  296 (307)
                           ..||+|++..++|+.++  ...+++.++++|+   | ++||+++|+
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p-~~gG~l~v~  204 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPAN-DPTAVALVT  204 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred             hhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence                 25999999999987554  4689999999999   6 237876654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.97  E-value=8.1e-10  Score=99.33  Aligned_cols=100  Identities=15%  Similarity=0.120  Sum_probs=74.8

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCCC---CC-CccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFEA---IP-PADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~~---~p-~~D~i~  260 (307)
                      ..+.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .        .+|++++.+|+.+.   .+ .||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            3467999999999999999999888889999999 888988876 1        46899999998762   22 599999


Q ss_pred             echhhccCChhHH--HHHHHHHHHhccCCCCCcEEEEEe
Q 037127          261 LKWILHDWNDEEC--VKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       261 ~~~vLh~~~~~~~--~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      +...-|.-+....  ..++++++++|+|   ||.+++..
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~  222 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQG  222 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEE---EEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence            8654332222221  5899999999999   78777653

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.96  E-value=7.3e-10  Score=95.23  Aligned_cols=99  Identities=14%  Similarity=0.199  Sum_probs=79.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC---CC------CCcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AI------PPAD  257 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~------p~~D  257 (307)
                      .+..+|||||||+|..+..+++..| +.+++++|. +.+++.+++      ..++|+++.+|+.+   ..      ..||
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            3567999999999999999999987 689999999 788888775      34689999999754   11      4599


Q ss_pred             EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      +|++...     ......+++++.+.|+|   ||.+++.+..+.
T Consensus       151 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~  186 (232)
T 3cbg_A          151 LIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLWH  186 (232)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTGG
T ss_pred             EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCcC
Confidence            9987644     23446889999999999   888888766654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.96  E-value=5.6e-09  Score=89.66  Aligned_cols=97  Identities=15%  Similarity=0.144  Sum_probs=71.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC-----CC-CccEEEec
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA-----IP-PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~-----~p-~~D~i~~~  262 (307)
                      +.+..+|||+|||+|.++..+++. .|+-+++++|+ +.+++.+.+   ...++.++.+|+..+     .+ .+|+|++.
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d  153 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD  153 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence            566789999999999999999986 46789999999 655433221   346899999999863     12 49999876


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ...   ++ ....+++.+++.|+|   ||++++.-
T Consensus       154 ~a~---~~-~~~il~~~~~~~Lkp---GG~lvisi  181 (232)
T 3id6_C          154 IAQ---PD-QTDIAIYNAKFFLKV---NGDMLLVI  181 (232)
T ss_dssp             CCC---TT-HHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCC---hh-HHHHHHHHHHHhCCC---CeEEEEEE
Confidence            443   33 223445666679999   99999873

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.96  E-value=5.5e-10  Score=102.56  Aligned_cols=95  Identities=18%  Similarity=0.176  Sum_probs=74.5

Q ss_pred             cCCCeEEEecCC------chHHHHHHHHH-CCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CC--------CCcc
Q 037127          195 EGLNSLVDVGGA------TGTVAKAIAKA-FPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AI--------PPAD  257 (307)
Q Consensus       195 ~~~~~vlDvGgG------~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~--------p~~D  257 (307)
                      .+..+|||||||      +|..+..+++. +|+.+++++|+ +.+.   . ..++|+|+++|+.+ ++        ..||
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~-~~~rI~fv~GDa~dlpf~~~l~~~d~sFD  290 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---V-DELRIRTIQGDQNDAEFLDRIARRYGPFD  290 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---G-CBTTEEEEECCTTCHHHHHHHHHHHCCEE
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---h-cCCCcEEEEecccccchhhhhhcccCCcc
Confidence            456899999999      67677777665 69999999999 5542   2 45799999999987 32        3599


Q ss_pred             EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +|++. ..|++.+  ..+.|++++++|||   ||+++|.|..
T Consensus       291 lVisd-gsH~~~d--~~~aL~el~rvLKP---GGvlVi~Dl~  326 (419)
T 3sso_A          291 IVIDD-GSHINAH--VRTSFAALFPHVRP---GGLYVIEDMW  326 (419)
T ss_dssp             EEEEC-SCCCHHH--HHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred             EEEEC-Ccccchh--HHHHHHHHHHhcCC---CeEEEEEecc
Confidence            99876 4565543  46899999999999   8988888776

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.95  E-value=1e-09  Score=98.76  Aligned_cols=100  Identities=14%  Similarity=0.062  Sum_probs=79.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c---------CCCeEEEecCCCCC---CC-CccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D---------LANLKYVGGDMFEA---IP-PADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~---------~~rv~~~~~d~~~~---~p-~~D~i  259 (307)
                      ..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .         .+|++++.+|+.+.   .+ .||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            3567999999999999999999888889999999 888888876 1         47999999998762   22 59999


Q ss_pred             Eechhhcc---CChhH--HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          260 VLKWILHD---WNDEE--CVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       260 ~~~~vLh~---~~~~~--~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ++....|.   -+...  ...++++++++|+|   ||.+++..
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~  195 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT  195 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence            99876654   11111  25889999999999   88888764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.95  E-value=3.6e-09  Score=90.12  Aligned_cols=94  Identities=16%  Similarity=0.160  Sum_probs=76.3

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh---c-------CCCeEEEecCCCCCC---CCccE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES---D-------LANLKYVGGDMFEAI---PPADA  258 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~---~-------~~rv~~~~~d~~~~~---p~~D~  258 (307)
                      ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++   .       .++++++.+|+....   ..||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            3456799999999999999999885 6679999999 888888775   1       468999999987632   25999


Q ss_pred             EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      |++...++.+.        +++++.|+|   ||++++...
T Consensus       155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~  183 (226)
T 1i1n_A          155 IHVGAAAPVVP--------QALIDQLKP---GGRLILPVG  183 (226)
T ss_dssp             EEECSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred             EEECCchHHHH--------HHHHHhcCC---CcEEEEEEe
Confidence            99998887654        577899999   898888653

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.95  E-value=1.1e-09  Score=98.92  Aligned_cols=99  Identities=12%  Similarity=0.095  Sum_probs=77.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---c------CCCeEEEecCCCCC---CC-CccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---D------LANLKYVGGDMFEA---IP-PADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~------~~rv~~~~~d~~~~---~p-~~D~i~  260 (307)
                      ..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++   .      .+|++++.+|+.+.   .+ .||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            3467999999999999999999878889999999 888988876   1      46899999998762   23 599999


Q ss_pred             echhhccCChhHH--HHHHHHHHHhccCCCCCcEEEEE
Q 037127          261 LKWILHDWNDEEC--VKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       261 ~~~vLh~~~~~~~--~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +...-+.-+....  ..++++++++|+|   ||.+++.
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~  229 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ  229 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            8653221122211  5899999999999   7877775

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.95  E-value=9.8e-10  Score=97.28  Aligned_cols=98  Identities=13%  Similarity=0.096  Sum_probs=75.8

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------------CCCeEEEecCCCCC---CCC
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------------LANLKYVGGDMFEA---IPP  255 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------------~~rv~~~~~d~~~~---~p~  255 (307)
                      ..+.+|||||||+|..+..+++. |..+++++|+ +.+++.+++ .              .+|++++.+|..+.   ...
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            34679999999999999999998 8889999999 888888775 2              36899999998652   225


Q ss_pred             ccEEEechhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 037127          256 ADAVVLKWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ||+|++....+..+.+.  ...++++++++|+|   ||.+++.
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~  192 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ  192 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            99999876544222222  25789999999999   7877775

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.94  E-value=1.2e-09  Score=99.07  Aligned_cols=99  Identities=17%  Similarity=0.127  Sum_probs=77.8

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCC---CCC--CccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFE---AIP--PADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~---~~p--~~D~i  259 (307)
                      ..+.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .        .+|++++.+|+.+   ..+  .||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            4568999999999999999999888889999999 888888876 1        4699999999865   233  59999


Q ss_pred             EechhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 037127          260 VLKWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       260 ~~~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ++....+..+.+.  ...+++.++++|+|   ||.+++.
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~  234 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ  234 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence            9854422111111  36899999999999   8888775

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.94  E-value=1.5e-09  Score=95.57  Aligned_cols=100  Identities=19%  Similarity=0.173  Sum_probs=81.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC-CC-CccEEEechhh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA-IP-PADAVVLKWIL  265 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~-~p-~~D~i~~~~vL  265 (307)
                      +.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.+++     ..++++++.+|+.+. .+ .+|+|++....
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~  196 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH  196 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence            45667999999999999999999988889999999 888888876     235789999999874 22 49999887543


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                            ....+++.+.+.|+|   ||.+++......+
T Consensus       197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~~  224 (272)
T 3a27_A          197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAEK  224 (272)
T ss_dssp             ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGG
T ss_pred             ------cHHHHHHHHHHHcCC---CCEEEEEEcCccc
Confidence                  234789999999999   8999888776543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.94  E-value=7.2e-10  Score=107.63  Aligned_cols=104  Identities=13%  Similarity=0.194  Sum_probs=82.7

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CC-C-CccEEEec
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AI-P-PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~-p-~~D~i~~~  262 (307)
                      +.++.+|||||||.|.++..+++.  +.+++|+|+ +.+++.|+.     ..-.|+|.++++.+   +. + .||+|++.
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence            345679999999999999999998  789999999 888888876     22469999999865   23 2 59999999


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      .+|||.++++...-+.++.+.+++   +++.+++..+..+
T Consensus       142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e  178 (569)
T 4azs_A          142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKE  178 (569)
T ss_dssp             SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTT
T ss_pred             cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEecccc
Confidence            999999987756666677777877   6777776655443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.93  E-value=9.9e-10  Score=98.37  Aligned_cols=100  Identities=16%  Similarity=0.118  Sum_probs=76.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---c------CCCeEEEecCCCC--C-CC-CccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---D------LANLKYVGGDMFE--A-IP-PADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~------~~rv~~~~~d~~~--~-~p-~~D~i~  260 (307)
                      ..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++   .      .+|++++.+|..+  + .+ .||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            4568999999999999999999888889999999 888888876   1      5799999999865  2 22 599999


Q ss_pred             echhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          261 LKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       261 ~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      +....+..+..  ....++++++++|+|   ||.+++..
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~  209 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG  209 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence            86554422221  124789999999999   78777654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.93  E-value=2.4e-09  Score=89.26  Aligned_cols=104  Identities=13%  Similarity=0.309  Sum_probs=75.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCC----------
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAI----------  253 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~----------  253 (307)
                      .++.+.+. .+.+..+|||+|||+|.++..++++  ..+++++|+.++    . ..++++++.+|+.+..          
T Consensus        14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~-~~~~v~~~~~D~~~~~~~~~~~~~~~   85 (191)
T 3dou_A           14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----E-EIAGVRFIRCDIFKETIFDDIDRALR   85 (191)
T ss_dssp             HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----C-CCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred             HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----c-cCCCeEEEEccccCHHHHHHHHHHhh
Confidence            34555554 2456789999999999999999998  779999999542    1 3468999999998732          


Q ss_pred             ----CCccEEEechhhcc---C------ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          254 ----PPADAVVLKWILHD---W------NDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       254 ----p~~D~i~~~~vLh~---~------~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                          ..+|+|++......   +      ..+.+..+|+.+.++|+|   ||++++...
T Consensus        86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~~  140 (191)
T 3dou_A           86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQF  140 (191)
T ss_dssp             HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEEc
Confidence                36999988542211   1      112245789999999999   888886543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.93  E-value=2.8e-09  Score=89.52  Aligned_cols=97  Identities=10%  Similarity=0.102  Sum_probs=74.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC--CCC--CccEEEechhh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE--AIP--PADAVVLKWIL  265 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~--~~p--~~D~i~~~~vL  265 (307)
                      ...+|||+|||+|.++..++++.. .+++++|+ +.+++.+++     ..++++++.+|+.+  +.+  .||+|++...+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            456899999999999999887753 48999999 888888876     22689999999876  322  49999988775


Q ss_pred             ccCChhHHHHHHHHHHHh--ccCCCCCcEEEEEeee
Q 037127          266 HDWNDEECVKILKKCKEA--ITSNSKIGKVIIIDMM  299 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~--L~p~~~gg~lli~e~~  299 (307)
                      | +..  ...+++.+.+.  |+|   ||.+++....
T Consensus       133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~~~~  162 (202)
T 2fpo_A          133 R-RGL--LEETINLLEDNGWLAD---EALIYVESEV  162 (202)
T ss_dssp             S-TTT--HHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred             C-CCc--HHHHHHHHHhcCccCC---CcEEEEEECC
Confidence            5 332  34677777664  998   7887765543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.92  E-value=3.6e-09  Score=95.90  Aligned_cols=104  Identities=14%  Similarity=0.179  Sum_probs=79.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh--c--------------CCCeEEE
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES--D--------------LANLKYV  245 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~--~--------------~~rv~~~  245 (307)
                      ..++..++  ..+..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.|++  .              .++++++
T Consensus        95 ~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~  172 (336)
T 2b25_A           95 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  172 (336)
T ss_dssp             HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence            33444444  566789999999999999999998 57789999999 888888876  1              2689999


Q ss_pred             ecCCCCC---CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          246 GGDMFEA---IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       246 ~~d~~~~---~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .+|+.+.   ++  .||+|++..     ++.  ..++++++++|+|   ||++++....
T Consensus       173 ~~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lkp---gG~lv~~~~~  221 (336)
T 2b25_A          173 HKDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKH---GGVCAVYVVN  221 (336)
T ss_dssp             ESCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEE---EEEEEEEESS
T ss_pred             ECChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCC---CcEEEEEeCC
Confidence            9999873   33  399998843     222  1378999999999   8999987653

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.91  E-value=5.3e-09  Score=94.08  Aligned_cols=103  Identities=14%  Similarity=0.181  Sum_probs=78.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C-CC-CccEEEec-
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A-IP-PADAVVLK-  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~-~p-~~D~i~~~-  262 (307)
                      .....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++     ...+++++.+|+.+ + .+ .||+|++. 
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~  195 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  195 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence            45667999999999999999999875 479999999 778887776     34579999999987 2 23 59999983 


Q ss_pred             -----hhhcc-------CChhHH-------HHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          263 -----WILHD-------WNDEEC-------VKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       263 -----~vLh~-------~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                           .+++.       |+.++.       .++|+++.+.|+|   ||++++....
T Consensus       196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs  248 (315)
T 1ixk_A          196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCS  248 (315)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESC
T ss_pred             CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCC
Confidence                 23332       333321       5899999999999   8988886543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.91  E-value=2.5e-09  Score=93.80  Aligned_cols=98  Identities=15%  Similarity=0.080  Sum_probs=71.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh-cCC------CeEEE--ecCCCC-CCCCccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES-DLA------NLKYV--GGDMFE-AIPPADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-~~~------rv~~~--~~d~~~-~~p~~D~i~~~~  263 (307)
                      +.+..+|||||||+|.++..+++.   .+++++|+.+++..+++ ...      ++.|+  .+|+.+ +...||+|++..
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~  148 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV  148 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence            456789999999999999999987   58999999555433322 111      68999  999987 322599999987


Q ss_pred             hhccCChh----H-HHHHHHHHHHhccCCCCCc--EEEEEee
Q 037127          264 ILHDWNDE----E-CVKILKKCKEAITSNSKIG--KVIIIDM  298 (307)
Q Consensus       264 vLh~~~~~----~-~~~~L~~~~~~L~p~~~gg--~lli~e~  298 (307)
                      . +..+..    . ...+|+.+.++|+|   ||  .+++-..
T Consensus       149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv~  186 (265)
T 2oxt_A          149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKVL  186 (265)
T ss_dssp             C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEES
T ss_pred             c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEeC
Confidence            6 433221    1 22488999999999   89  7777443

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.91  E-value=3.7e-09  Score=97.02  Aligned_cols=95  Identities=16%  Similarity=0.192  Sum_probs=72.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhcc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILHD  267 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~  267 (307)
                      +.++|||||||+|.++...++.. ..+++++|..++++.|++      ..++|+++.+|+.+ +.| .+|+|++-+.-+.
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~  161 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG  161 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence            46789999999999988777753 358999999767777765      57899999999988 567 5999987544433


Q ss_pred             CCh-hHHHHHHHHHHHhccCCCCCcEEE
Q 037127          268 WND-EECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       268 ~~~-~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      ... .....++....+.|+|   ||.++
T Consensus       162 l~~e~~l~~~l~a~~r~Lkp---~G~~i  186 (376)
T 4hc4_A          162 LLHESMLSSVLHARTKWLKE---GGLLL  186 (376)
T ss_dssp             BTTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred             ccccchhhhHHHHHHhhCCC---CceEC
Confidence            222 2356788888899999   77765

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.91  E-value=1.9e-09  Score=95.70  Aligned_cols=91  Identities=20%  Similarity=0.324  Sum_probs=68.7

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-----CCCeEEEecCCCC-CCC
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-----LANLKYVGGDMFE-AIP  254 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-----~~rv~~~~~d~~~-~~p  254 (307)
                      .+.+++.+.  .....+|||||||+|.++..+++..  .+++++|+ +.+++.+++ .     .++++++.+|+.+ +.+
T Consensus        17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~   92 (285)
T 1zq9_A           17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   92 (285)
T ss_dssp             HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence            345555555  5567799999999999999999984  58999999 888888876 1     2589999999998 677


Q ss_pred             CccEEEechhhccCChhHHHHHHH
Q 037127          255 PADAVVLKWILHDWNDEECVKILK  278 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~  278 (307)
                      .+|+|+++ .-++|..+....+|.
T Consensus        93 ~fD~vv~n-lpy~~~~~~~~~~l~  115 (285)
T 1zq9_A           93 FFDTCVAN-LPYQISSPFVFKLLL  115 (285)
T ss_dssp             CCSEEEEE-CCGGGHHHHHHHHHH
T ss_pred             hhcEEEEe-cCcccchHHHHHHHh
Confidence            89988874 334465554445553

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.90  E-value=3.8e-09  Score=87.69  Aligned_cols=97  Identities=16%  Similarity=0.286  Sum_probs=73.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCC---------CeEEEecchHHHHhchhcCCCeEEE-ecCCCCC---------CC
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPN---------LECTDFDLPHVVNGLESDLANLKYV-GGDMFEA---------IP  254 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~---------~~~~~~Dl~~~~~~a~~~~~rv~~~-~~d~~~~---------~p  254 (307)
                      +.+..+|||||||+|.++..+++.++.         .+++++|+.++.     ...+++++ .+|+.+.         .+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----PLEGATFLCPADVTDPRTSQRILEVLP   94 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----CCTTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----cCCCCeEEEeccCCCHHHHHHHHHhcC
Confidence            455789999999999999999999875         799999995521     23578999 9998762         22


Q ss_pred             --CccEEEechhhcc---C-ChhH-----HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          255 --PADAVVLKWILHD---W-NDEE-----CVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       255 --~~D~i~~~~vLh~---~-~~~~-----~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                        .||+|++...+|.   | .+..     ...+|+++.++|+|   ||++++...
T Consensus        95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~  146 (196)
T 2nyu_A           95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW  146 (196)
T ss_dssp             GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence              5999998655442   1 2211     14789999999999   899888754

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.90  E-value=2.3e-09  Score=94.61  Aligned_cols=97  Identities=13%  Similarity=0.019  Sum_probs=70.7

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh-cCC------CeEEE--ecCCCC-CCCCccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES-DLA------NLKYV--GGDMFE-AIPPADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-~~~------rv~~~--~~d~~~-~~p~~D~i~~~~  263 (307)
                      +.+..+|||||||+|.++..+++.   .+++++|+.+++..+++ ...      +++|+  .+|+.+ +...||+|++..
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~  156 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI  156 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence            456789999999999999999987   58999999555433322 111      78999  999887 322599999987


Q ss_pred             hhccCChh----H-HHHHHHHHHHhccCCCCCc--EEEEEe
Q 037127          264 ILHDWNDE----E-CVKILKKCKEAITSNSKIG--KVIIID  297 (307)
Q Consensus       264 vLh~~~~~----~-~~~~L~~~~~~L~p~~~gg--~lli~e  297 (307)
                      . +..+..    . ...+|+.+.++|+|   ||  .+++..
T Consensus       157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~  193 (276)
T 2wa2_A          157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKV  193 (276)
T ss_dssp             C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEE
T ss_pred             C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEe
Confidence            6 433221    1 22478999999999   89  777743

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.90  E-value=1.4e-09  Score=96.94  Aligned_cols=98  Identities=11%  Similarity=0.076  Sum_probs=74.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCCC---CC-CccEEEe
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFEA---IP-PADAVVL  261 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~~---~p-~~D~i~~  261 (307)
                      .+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .        .+|++++.+|+.+.   .+ .||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            457999999999999999999888889999999 888888876 2        47999999998652   22 4999997


Q ss_pred             chhhccCCh-h--HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          262 KWILHDWND-E--ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       262 ~~vLh~~~~-~--~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .-.-+.... .  ....++++++++|+|   ||.+++.
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~  204 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE  204 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            533220111 0  125889999999999   7877775

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.88  E-value=5.5e-09  Score=89.41  Aligned_cols=96  Identities=8%  Similarity=0.045  Sum_probs=79.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-CccEEEechhhcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PADAVVLKWILHD  267 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~  267 (307)
                      ..+.+|||||||.|-++..+.   |..+++++|+ +.+++.+++    ...+.++...|... +.| .+|++++.-++|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            557899999999999999887   8999999999 888998887    46788999999998 444 4999999999999


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ..+++-...+ ++.++|++   ++.++-++
T Consensus       181 LE~q~~~~~~-~ll~aL~~---~~vvVsfP  206 (253)
T 3frh_A          181 LEREQAGSAM-ALLQSLNT---PRMAVSFP  206 (253)
T ss_dssp             HHHHSTTHHH-HHHHHCBC---SEEEEEEE
T ss_pred             hhhhchhhHH-HHHHHhcC---CCEEEEcC
Confidence            8776644555 88899998   55555554

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.87  E-value=7.1e-09  Score=86.56  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCCCccEEEechhhccCChhHH
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEEC  273 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~  273 (307)
                      ....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++...+++++.+|+.+-...+|+|++..++|.+++...
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~  128 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD  128 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence            35679999999999999999987 5557999999 889998887333899999999872236999999999998876544


Q ss_pred             HHHHHHHHHhc
Q 037127          274 VKILKKCKEAI  284 (307)
Q Consensus       274 ~~~L~~~~~~L  284 (307)
                      ..+++++.+.+
T Consensus       129 ~~~l~~~~~~~  139 (200)
T 1ne2_A          129 RAFIDKAFETS  139 (200)
T ss_dssp             HHHHHHHHHHE
T ss_pred             HHHHHHHHHhc
Confidence            57888888876

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.86  E-value=1.3e-10  Score=100.03  Aligned_cols=90  Identities=14%  Similarity=0.102  Sum_probs=69.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c--CCCeEEEecCCCCCCC--CccEEEechhhc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D--LANLKYVGGDMFEAIP--PADAVVLKWILH  266 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~--~~rv~~~~~d~~~~~p--~~D~i~~~~vLh  266 (307)
                      ...+|||+|||+|.++..+++..  .+++++|+ +.+++.+++    .  .++++++.+|+.+..+  .||+|++..++|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence            56799999999999999999974  79999999 888888876    1  2689999999987323  599999998888


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcE
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGK  292 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~  292 (307)
                      ..++..  ..+.+++++|+|   ||.
T Consensus       156 ~~~~~~--~~~~~~~~~L~p---gG~  176 (241)
T 3gdh_A          156 GPDYAT--AETFDIRTMMSP---DGF  176 (241)
T ss_dssp             SGGGGG--SSSBCTTTSCSS---CHH
T ss_pred             Ccchhh--hHHHHHHhhcCC---cce
Confidence            665542  244455566665   555

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.86  E-value=6.6e-09  Score=91.53  Aligned_cols=104  Identities=14%  Similarity=0.149  Sum_probs=77.5

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C------CCCccEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A------IPPADAV  259 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~------~p~~D~i  259 (307)
                      .....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++     ...+++++.+|+.+ +      ...||+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            455679999999999999999998877 79999999 777887765     23589999999876 2      2259999


Q ss_pred             Eec------hhhcc---CChh-------HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          260 VLK------WILHD---WNDE-------ECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       260 ~~~------~vLh~---~~~~-------~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ++.      .+++.   |+.+       ...++|+++.+.|+|   ||++++.....
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~  214 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSM  214 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCC
Confidence            986      23321   2221       126899999999999   88888766544

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.85  E-value=5.4e-09  Score=92.57  Aligned_cols=102  Identities=9%  Similarity=0.035  Sum_probs=74.0

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEe-cCCCC----CCC--Cc
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVG-GDMFE----AIP--PA  256 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~-~d~~~----~~p--~~  256 (307)
                      .++..+. ......+|||||||+|.++..+++. +..+++++|+ +.|++.+.+..+|+.... .|+..    .+|  .+
T Consensus        75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f  152 (291)
T 3hp7_A           75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP  152 (291)
T ss_dssp             HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred             HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence            3455554 1234579999999999999999886 4568999999 777766433455665443 34432    234  38


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      |++++..++|.+     ..+|.+++++|+|   ||+++++
T Consensus       153 D~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~l  184 (291)
T 3hp7_A          153 SFASIDVSFISL-----NLILPALAKILVD---GGQVVAL  184 (291)
T ss_dssp             SEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEE
T ss_pred             CEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEE
Confidence            999998887754     4789999999999   9999886

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.84  E-value=3.5e-09  Score=94.81  Aligned_cols=96  Identities=10%  Similarity=0.103  Sum_probs=69.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-----hHHHHhchh-c--CCCeEEEec-CCCC-CCCCccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-----PHVVNGLES-D--LANLKYVGG-DMFE-AIPPADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-----~~~~~~a~~-~--~~rv~~~~~-d~~~-~~p~~D~i~~~~  263 (307)
                      +.+..+|||||||+|.++..++++   .+++++|+     +..++.+.. .  .++|+|+.+ |+.+ +...||+|++..
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~  156 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI  156 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence            455689999999999999999987   37899998     433322221 1  267999999 9987 333699999976


Q ss_pred             hhc---cCChhH-HHHHHHHHHHhccCCCCCcEEEE
Q 037127          264 ILH---DWNDEE-CVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       264 vLh---~~~~~~-~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      ..+   ...+.. ...+|+.++++|+|   ||.+++
T Consensus       157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~  189 (305)
T 2p41_A          157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV  189 (305)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred             ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence            653   222222 22688999999999   887766

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.83  E-value=7.1e-09  Score=90.78  Aligned_cols=90  Identities=13%  Similarity=0.054  Sum_probs=74.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCCCCCCccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFEAIPPADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~~~p~~D~i~~~~v  264 (307)
                      ..+.+|||||||+|..+..+++. + .+++++|+ +.+++.|++ .        .+|++++.+|..+-...||+|++.  
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d--  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL--  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence            34679999999999999999998 7 89999999 889998876 1        468999999988733459999986  


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                         .+++.  .+++.++++|+|   ||.+++.
T Consensus       147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~  170 (262)
T 2cmg_A          147 ---QEPDI--HRIDGLKRMLKE---DGVFISV  170 (262)
T ss_dssp             ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred             ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence               23432  489999999999   8888775

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.82  E-value=4.4e-09  Score=86.02  Aligned_cols=87  Identities=8%  Similarity=0.038  Sum_probs=71.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CC---C--CccEEEechhh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AI---P--PADAVVLKWIL  265 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~---p--~~D~i~~~~vL  265 (307)
                      .....+|||||||.                +.+|. +.+++.+++ ...+++++.+|+.+ +.   +  .||+|++..++
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l   73 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP   73 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence            56678999999996                23888 889998887 44569999999987 33   4  49999999999


Q ss_pred             ccC-ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          266 HDW-NDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       266 h~~-~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      |++ ++.  ..+|++++++|||   ||++++.++...
T Consensus        74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~  105 (176)
T 2ld4_A           74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVET  105 (176)
T ss_dssp             TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEES
T ss_pred             hhcccCH--HHHHHHHHHHCCC---CEEEEEEccccc
Confidence            998 665  5899999999999   999999777654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.79  E-value=2.8e-08  Score=93.70  Aligned_cols=105  Identities=18%  Similarity=0.195  Sum_probs=81.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---CC--CccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---IP--PADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~p--~~D~i~~  261 (307)
                      .....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++     ...+++++.+|+.+.   ++  .||+|++
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            455679999999999999999999887 79999999 777777765     345799999999872   33  4999996


Q ss_pred             ------chhhccCCh-------hHH-------HHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          262 ------KWILHDWND-------EEC-------VKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       262 ------~~vLh~~~~-------~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                            ..+++..++       ++.       ..+|+++.+.|+|   ||++++.+....
T Consensus       337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~  393 (450)
T 2yxl_A          337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF  393 (450)
T ss_dssp             ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred             cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence                  335554333       211       5789999999999   899988776543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.79  E-value=1.4e-08  Score=87.38  Aligned_cols=99  Identities=11%  Similarity=0.083  Sum_probs=65.6

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEE--------e-cCCCCCCCC
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYV--------G-GDMFEAIPP  255 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~--------~-~d~~~~~p~  255 (307)
                      ++..+. ......+|||||||+|.++..+++. +..+++++|+ +.+++.+.+...++...        . .|+..+.  
T Consensus        28 ~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--  103 (232)
T 3opn_A           28 ALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR--  103 (232)
T ss_dssp             HHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC--
T ss_pred             HHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC--
Confidence            444444 1234569999999999999999988 3349999999 77777765433444332        2 2222211  


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +|.+.+..++..+     ..+|++++++|+|   ||+++++
T Consensus       104 ~d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~  136 (232)
T 3opn_A          104 PSFTSIDVSFISL-----DLILPPLYEILEK---NGEVAAL  136 (232)
T ss_dssp             CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEE
T ss_pred             CCEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEE
Confidence            3444444444333     4789999999999   9999885

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.78  E-value=1.1e-08  Score=93.05  Aligned_cols=100  Identities=11%  Similarity=0.145  Sum_probs=80.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC-----CeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--CccEEEech
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPN-----LECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVVLKW  263 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~-----~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~i~~~~  263 (307)
                      ...+|||+|||+|.++..+++..+.     .+++++|+ +.+++.|+.    ..-++.+..+|.+.+.+  .+|+|++.-
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP  209 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL  209 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence            4578999999999999999988764     68999999 788888775    23378999999998544  599999988


Q ss_pred             hhccCChhHH----------------HHHHHHHHHhccCCCCCcEEEEEee
Q 037127          264 ILHDWNDEEC----------------VKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       264 vLh~~~~~~~----------------~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      .++.++.++.                ..+++++.+.|+|   ||+++++-+
T Consensus       210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p  257 (344)
T 2f8l_A          210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP  257 (344)
T ss_dssp             CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence            8766655432                2689999999998   898887763

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.75  E-value=1.6e-08  Score=90.27  Aligned_cols=89  Identities=15%  Similarity=0.279  Sum_probs=64.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCCCc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIPPA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p~~  256 (307)
                      +.+++.+.  .....+|||||||+|.++..+++.  ..+++++|+ +.+++.+++     ..++++++.+|+.+ +.+.+
T Consensus        32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~  107 (299)
T 2h1r_A           32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF  107 (299)
T ss_dssp             HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred             HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence            44455444  456779999999999999999987  468999999 888888776     23689999999988 55679


Q ss_pred             cEEEechhhccCChhHHHHHH
Q 037127          257 DAVVLKWILHDWNDEECVKIL  277 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L  277 (307)
                      |+|++.- -++|..+....+|
T Consensus       108 D~Vv~n~-py~~~~~~~~~ll  127 (299)
T 2h1r_A          108 DVCTANI-PYKISSPLIFKLI  127 (299)
T ss_dssp             SEEEEEC-CGGGHHHHHHHHH
T ss_pred             CEEEEcC-CcccccHHHHHHH
Confidence            9988754 4457766666666

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.72  E-value=2.4e-08  Score=87.94  Aligned_cols=99  Identities=12%  Similarity=0.054  Sum_probs=77.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~~v  264 (307)
                      .....+|||+|||+|.++..+++.. ..+++++|+ |..++.+++      ..++|+++.+|.++-.+  .||.|++.-.
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p  201 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence            3557899999999999999999874 468999999 888888776      57899999999988322  5999887532


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      -    .  +..+|..+.+.|++   ||.|.+.+.+-.+
T Consensus       202 ~----~--~~~~l~~a~~~lk~---gG~ih~~~~~~e~  230 (278)
T 3k6r_A          202 V----R--THEFIPKALSIAKD---GAIIHYHNTVPEK  230 (278)
T ss_dssp             S----S--GGGGHHHHHHHEEE---EEEEEEEEEEEGG
T ss_pred             C----c--HHHHHHHHHHHcCC---CCEEEEEeeeccc
Confidence            1    1  24678889999998   8888777766543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.70  E-value=4.9e-08  Score=84.51  Aligned_cols=84  Identities=11%  Similarity=0.256  Sum_probs=63.2

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC-Cc
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP-PA  256 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p-~~  256 (307)
                      .+.+++.+.  .....+|||||||+|.++..+++..  .+++++|+ +.+++.+++   ..++++++.+|+.+ +++ ..
T Consensus        19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~   94 (244)
T 1qam_A           19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ   94 (244)
T ss_dssp             HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred             HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence            345555555  4567799999999999999999985  68999999 888888876   23689999999988 555 23


Q ss_pred             cEEEechhhccCCh
Q 037127          257 DAVVLKWILHDWND  270 (307)
Q Consensus       257 D~i~~~~vLh~~~~  270 (307)
                      ++.++++.-++++.
T Consensus        95 ~~~vv~nlPy~~~~  108 (244)
T 1qam_A           95 SYKIFGNIPYNIST  108 (244)
T ss_dssp             CCEEEEECCGGGHH
T ss_pred             CeEEEEeCCcccCH
Confidence            44556665555543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.70  E-value=2.6e-08  Score=90.15  Aligned_cols=99  Identities=14%  Similarity=0.171  Sum_probs=74.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCC-CeEEEecCCCCC-------CCCccEEE
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLA-NLKYVGGDMFEA-------IPPADAVV  260 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~-rv~~~~~d~~~~-------~p~~D~i~  260 (307)
                      +..+|||+|||+|.++..+++..  .+++++|+ +.+++.+++      ..+ +++++++|+++.       ...||+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            45689999999999999999964  49999999 888888876      233 599999999872       12599999


Q ss_pred             echhhcc-------CC-hhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          261 LKWILHD-------WN-DEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       261 ~~~vLh~-------~~-~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +.-....       |. .++...+++++.+.|+|   ||.+++....
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp---gG~lli~~~~  274 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTAY  274 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc---CcEEEEEECC
Confidence            8432110       00 12346899999999999   8887766544

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.69  E-value=4.6e-08  Score=91.05  Aligned_cols=108  Identities=10%  Similarity=0.070  Sum_probs=78.3

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccE
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADA  258 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~  258 (307)
                      ++.+++.+.  .....+|||+|||+|.++..+++++ +..+++++|+ +.+++.|    .+++++++|+++..+  .||+
T Consensus        28 ~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~~~~~fD~  101 (421)
T 2ih2_A           28 VDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEPGEAFDL  101 (421)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCCSSCEEE
T ss_pred             HHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcCccCCCCE
Confidence            344444444  2345699999999999999999987 6789999999 6666555    589999999988433  5999


Q ss_pred             EEechhhc----------cCChhH-----------------HHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          259 VVLKWILH----------DWNDEE-----------------CVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       259 i~~~~vLh----------~~~~~~-----------------~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      |++.=...          +++++.                 ...+++++.+.|+|   ||+++++-+.
T Consensus       102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p~  166 (421)
T 2ih2_A          102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVPA  166 (421)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEEG
T ss_pred             EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEECh
Confidence            99842111          122221                 12679999999999   8998877653

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.67  E-value=3.7e-08  Score=92.31  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=79.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC---CC--CccEEEe--
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA---IP--PADAVVL--  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~---~p--~~D~i~~--  261 (307)
                      ..+..+|||+|||+|..+..+++..|+.+++++|+ +..++.+++    ..-+++++.+|+.+.   ++  .||+|++  
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  323 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  323 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence            45567999999999999999999998889999999 777777665    334689999999873   33  4999986  


Q ss_pred             ----chhhccCCh-------hHH-------HHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          262 ----KWILHDWND-------EEC-------VKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       262 ----~~vLh~~~~-------~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                          ..+++..++       ++.       ..+|+++.+.|+|   ||++++.+..+
T Consensus       324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~  377 (429)
T 1sqg_A          324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSV  377 (429)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCC
T ss_pred             CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence                234443333       222       4889999999999   89988877544

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.66  E-value=9.1e-08  Score=80.09  Aligned_cols=89  Identities=18%  Similarity=0.082  Sum_probs=71.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCCCccEEEechhhccCC
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIPPADAVVLKWILHDWN  269 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~  269 (307)
                      ....+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++    ..-+++++.+|+.+-...+|+|++.-..|.+.
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence            3567999999999999999998743 47999999 888888876    11289999999987323699999999888876


Q ss_pred             hhHHHHHHHHHHHhc
Q 037127          270 DEECVKILKKCKEAI  284 (307)
Q Consensus       270 ~~~~~~~L~~~~~~L  284 (307)
                      ......+|+++.+.+
T Consensus       127 ~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          127 KHADRPFLLKAFEIS  141 (207)
T ss_dssp             TTTTHHHHHHHHHHC
T ss_pred             CCchHHHHHHHHHhc
Confidence            544467888888776

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.63  E-value=1.9e-07  Score=88.57  Aligned_cols=102  Identities=17%  Similarity=0.249  Sum_probs=78.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC-CccEEEec--
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP-PADAVVLK--  262 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p-~~D~i~~~--  262 (307)
                      ...+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++     ...+|+++.+|+.+ +  .+ .||+|++.  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            567999999999999999999875 478999999 777887765     34579999999987 2  34 49999872  


Q ss_pred             ----hhh-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          263 ----WIL-------HDWNDEE-------CVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       263 ----~vL-------h~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                          .++       +.|+.++       -.++|+++.++|+|   ||++++....+
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~  249 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTL  249 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccC
Confidence                222       3354432       24789999999999   88888766543

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.60  E-value=7.1e-08  Score=90.86  Aligned_cols=102  Identities=14%  Similarity=0.105  Sum_probs=77.7

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC-CccEEEe-
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP-PADAVVL-  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p-~~D~i~~-  261 (307)
                      .....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++     ... |.++.+|+.+ +  .+ .||+|++ 
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D  177 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD  177 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence            456779999999999999999998865 68999999 778887765     234 9999999876 2  23 4999995 


Q ss_pred             ------------chhhccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          262 ------------KWILHDWNDEEC-------VKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       262 ------------~~vLh~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                                  ..+...|+.++.       .++|+++.+.|+|   ||+++.....
T Consensus       178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs  231 (464)
T 3m6w_A          178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCT  231 (464)
T ss_dssp             CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESC
T ss_pred             CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEecc
Confidence                        122334444333       6799999999999   8888775543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.58  E-value=1.1e-07  Score=86.09  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=75.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCccEEEechhhcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPADAVVLKWILHD  267 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~  267 (307)
                      .+..+|||+|||+|.++.. ++  +..+++++|+ +.+++.+++      ..++++++.+|+++....||+|++.-.-  
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~--  268 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK--  268 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT--
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH--
Confidence            4567999999999999999 77  4779999999 888888876      2468999999998844569999984221  


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                          ....+++.+.+.|+|   ||.+++.+...
T Consensus       269 ----~~~~~l~~~~~~L~~---gG~l~~~~~~~  294 (336)
T 2yx1_A          269 ----FAHKFIDKALDIVEE---GGVIHYYTIGK  294 (336)
T ss_dssp             ----TGGGGHHHHHHHEEE---EEEEEEEEEES
T ss_pred             ----hHHHHHHHHHHHcCC---CCEEEEEEeec
Confidence                123789999999998   88888877654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.58  E-value=7.8e-08  Score=88.43  Aligned_cols=90  Identities=16%  Similarity=0.109  Sum_probs=70.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~v  264 (307)
                      .+..+|||+|||+|.++..+++..+..+++++|+ +.+++.|++      ..++++++.+|+.+ +.+  .+|+|++.-.
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP  295 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP  295 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence            4567899999999999999999988778999999 888988876      23689999999988 443  5999999655


Q ss_pred             hccCC-----hhH-HHHHHHHHHHhc
Q 037127          265 LHDWN-----DEE-CVKILKKCKEAI  284 (307)
Q Consensus       265 Lh~~~-----~~~-~~~~L~~~~~~L  284 (307)
                      .+...     -++ -..+++.+++.|
T Consensus       296 yg~r~~~~~~~~~ly~~~~~~l~r~l  321 (373)
T 3tm4_A          296 YGLKIGKKSMIPDLYMKFFNELAKVL  321 (373)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHE
T ss_pred             CCcccCcchhHHHHHHHHHHHHHHHc
Confidence            43211     111 257888999988

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.57  E-value=1.8e-08  Score=87.26  Aligned_cols=108  Identities=14%  Similarity=0.206  Sum_probs=74.3

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC-c
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP-A  256 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~-~  256 (307)
                      ...+++.+.  .....+|||||||+|.++..+++..  .+++++|+ +.+++.+++   ..++++++.+|+.+ +.+. .
T Consensus        18 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~   93 (245)
T 1yub_A           18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred             HHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCC
Confidence            345566555  5567799999999999999999985  78999999 778877775   24689999999988 4442 1


Q ss_pred             cEEEechhhccCChhHHHHH----------H----HHHHHhccCCCCCcEEEEEe
Q 037127          257 DAVVLKWILHDWNDEECVKI----------L----KKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~----------L----~~~~~~L~p~~~gg~lli~e  297 (307)
                      .+.++++.-++.+......+          +    +.+.+.|+|   ||++.++.
T Consensus        94 ~f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~~  145 (245)
T 1yub_A           94 RYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLLL  145 (245)
T ss_dssp             EEEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHHT
T ss_pred             CcEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhhh
Confidence            22344443333333322232          3    568888888   78766543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.53  E-value=2.5e-07  Score=82.20  Aligned_cols=84  Identities=11%  Similarity=0.173  Sum_probs=64.7

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC--
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP--  255 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~--  255 (307)
                      ...+++...  .....+|||||||+|.++..+++.  ..+++++|+ +.+++.+++   ..++++++.+|+.+ +++.  
T Consensus        39 ~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~  114 (295)
T 3gru_A           39 VNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD  114 (295)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred             HHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence            344555555  556779999999999999999998  568999999 888888876   35789999999998 5553  


Q ss_pred             ccEEEechhhccCChh
Q 037127          256 ADAVVLKWILHDWNDE  271 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~  271 (307)
                      +|+|+.+-. ++++.+
T Consensus       115 fD~Iv~NlP-y~is~p  129 (295)
T 3gru_A          115 FNKVVANLP-YQISSP  129 (295)
T ss_dssp             CSEEEEECC-GGGHHH
T ss_pred             ccEEEEeCc-ccccHH
Confidence            898886533 334443

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.53  E-value=8.3e-08  Score=88.94  Aligned_cols=100  Identities=19%  Similarity=0.147  Sum_probs=75.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC------C-CccEEEe
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI------P-PADAVVL  261 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~------p-~~D~i~~  261 (307)
                      +..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++      ..++++|+.+|+++..      + .||+|++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            5679999999999999999986 4458999999 888888876      2238999999987621      2 5999998


Q ss_pred             chhhccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          262 KWILHDWND-------EECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       262 ~~vLh~~~~-------~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .-.-+..+.       .....+++++.+.|+|   ||.+++....
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~  337 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSCS  337 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEECC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEECC
Confidence            532221111       3456789999999999   8888777543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.50  E-value=4.4e-07  Score=83.91  Aligned_cols=113  Identities=10%  Similarity=0.037  Sum_probs=81.5

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN--------------------------------------LECT  224 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~  224 (307)
                      +..++....  +.+...|||.+||+|.++++.+....+                                      .+++
T Consensus       190 Aa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  267 (393)
T 3k0b_A          190 AAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII  267 (393)
T ss_dssp             HHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence            344555555  456678999999999999998876543                                      5699


Q ss_pred             Eecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhcc-CC-hhHHHHHHHHHHHhccCCCCCcEE
Q 037127          225 DFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILHD-WN-DEECVKILKKCKEAITSNSKIGKV  293 (307)
Q Consensus       225 ~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~-~~-~~~~~~~L~~~~~~L~p~~~gg~l  293 (307)
                      ++|+ +.+++.|++      ..++|+++.+|+.+ +.+ .+|+|++.=.... .. .++...+.+.+.+.|++ -+|+++
T Consensus       268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~  346 (393)
T 3k0b_A          268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSV  346 (393)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEE
Confidence            9999 889988876      35679999999988 333 5999998744322 12 23455677777777764 248888


Q ss_pred             EEEee
Q 037127          294 IIIDM  298 (307)
Q Consensus       294 li~e~  298 (307)
                      +|+..
T Consensus       347 ~iit~  351 (393)
T 3k0b_A          347 YVLTS  351 (393)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88754

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.49  E-value=1.3e-07  Score=87.22  Aligned_cols=99  Identities=16%  Similarity=0.121  Sum_probs=75.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC------C-CccEEEec
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI------P-PADAVVLK  262 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~------p-~~D~i~~~  262 (307)
                      +..+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++     ..++++++.+|+++..      + .||+|++.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            5678999999999999999998  568999999 888888876     2345999999987621      3 59999984


Q ss_pred             hhhccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          263 WILHDWND-------EECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       263 ~vLh~~~~-------~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      -.-+..+.       +....+++.+.+.|+|   ||.+++....
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~  327 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASCS  327 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence            33221111       3346799999999999   8888877643

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.48  E-value=1.3e-06  Score=80.46  Aligned_cols=113  Identities=14%  Similarity=0.067  Sum_probs=83.9

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN--------------------------------------LECT  224 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~  224 (307)
                      +..++....  +.+...|+|.+||+|.++++.+....+                                      .+++
T Consensus       183 Aaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~  260 (384)
T 3ldg_A          183 AAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS  260 (384)
T ss_dssp             HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence            344555445  456678999999999999998865444                                      5699


Q ss_pred             Eecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhcc-CC-hhHHHHHHHHHHHhccCCCCCcEE
Q 037127          225 DFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILHD-WN-DEECVKILKKCKEAITSNSKIGKV  293 (307)
Q Consensus       225 ~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~-~~-~~~~~~~L~~~~~~L~p~~~gg~l  293 (307)
                      ++|+ +.+++.|++      ..++++|+.+|+.+ +.+ .+|+|++.=..+. .. .++...+.+.+.+.|++ -+|+++
T Consensus       261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~  339 (384)
T 3ldg_A          261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQ  339 (384)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEE
Confidence            9999 888988876      45689999999988 333 5999998754432 33 35667788888888875 348888


Q ss_pred             EEEee
Q 037127          294 IIIDM  298 (307)
Q Consensus       294 li~e~  298 (307)
                      .|+..
T Consensus       340 ~iit~  344 (384)
T 3ldg_A          340 FILTN  344 (384)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            88765

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.47  E-value=2.2e-07  Score=87.41  Aligned_cols=101  Identities=13%  Similarity=0.081  Sum_probs=76.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHC-------------CCCeEEEecc-hHHHHhchh-----cCC--CeEEEecCCCCC-
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAF-------------PNLECTDFDL-PHVVNGLES-----DLA--NLKYVGGDMFEA-  252 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~-------------p~~~~~~~Dl-~~~~~~a~~-----~~~--rv~~~~~d~~~~-  252 (307)
                      ....+|+|.|||+|.++..+++..             +..+++|+|+ +.+++.|+.     ...  ++.+.++|.+.. 
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~  249 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE  249 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence            445689999999999999988763             4568999999 778877765     122  788999999883 


Q ss_pred             CC-CccEEEechhhccCCh---------------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          253 IP-PADAVVLKWILHDWND---------------EECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       253 ~p-~~D~i~~~~vLh~~~~---------------~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      .. .||+|++.-..+....               +....+++++.+.|+|   ||++.++-+
T Consensus       250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p  308 (445)
T 2okc_A          250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP  308 (445)
T ss_dssp             CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence            22 6999998765543211               1124789999999999   899988764

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.46  E-value=1.6e-07  Score=86.71  Aligned_cols=99  Identities=15%  Similarity=0.106  Sum_probs=73.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCC-CeEEEecCCCCCC------C-CccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLA-NLKYVGGDMFEAI------P-PADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~-rv~~~~~d~~~~~------p-~~D~i  259 (307)
                      .+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++      ..+ +++|+++|+++..      + .||+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  289 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence            346799999999999999999863 348999999 888888876      233 8999999987621      2 59999


Q ss_pred             Eechhh-----ccCCh--hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          260 VLKWIL-----HDWND--EECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       260 ~~~~vL-----h~~~~--~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ++.-..     ....+  +...++++.+.+.|+|   ||.+++..
T Consensus       290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~  331 (385)
T 2b78_A          290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST  331 (385)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence            984332     12222  2335688899999999   77776654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.45  E-value=1.8e-07  Score=86.60  Aligned_cols=100  Identities=13%  Similarity=0.042  Sum_probs=75.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------c-CCCeEEEecCCCCC-------CCCccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------D-LANLKYVGGDMFEA-------IPPADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~-~~rv~~~~~d~~~~-------~p~~D~i  259 (307)
                      .+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++      . .++++|+.+|+++.       ...||+|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            346799999999999999999874 458999999 888888876      2 23899999998772       1259999


Q ss_pred             EechhhccCC-------hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          260 VLKWILHDWN-------DEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       260 ~~~~vLh~~~-------~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ++.-.-...+       ......++.++.+.|+|   ||.+++...
T Consensus       298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  340 (396)
T 3c0k_A          298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFSC  340 (396)
T ss_dssp             EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence            9863221110       13456899999999999   787776543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.42  E-value=4e-07  Score=81.16  Aligned_cols=77  Identities=19%  Similarity=0.202  Sum_probs=61.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-C--C--
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-A--I--  253 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~--~--  253 (307)
                      +.++..+.  .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++    ..++++++++|+.+ +  .  
T Consensus        16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~   93 (301)
T 1m6y_A           16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   93 (301)
T ss_dssp             HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence            44555444  45667999999999999999999999889999999 889988876    23799999999865 2  1  


Q ss_pred             ---CCccEEEec
Q 037127          254 ---PPADAVVLK  262 (307)
Q Consensus       254 ---p~~D~i~~~  262 (307)
                         ..+|.|++.
T Consensus        94 ~g~~~~D~Vl~D  105 (301)
T 1m6y_A           94 LGIEKVDGILMD  105 (301)
T ss_dssp             TTCSCEEEEEEE
T ss_pred             cCCCCCCEEEEc
Confidence               358988763

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.42  E-value=9.7e-07  Score=81.42  Aligned_cols=113  Identities=13%  Similarity=0.073  Sum_probs=81.5

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN--------------------------------------LECT  224 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~  224 (307)
                      +..++....  +.+..+|||.+||+|.++++++....+                                      .+++
T Consensus       184 Aa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  261 (385)
T 3ldu_A          184 AAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY  261 (385)
T ss_dssp             HHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred             HHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence            344555455  456678999999999999999876432                                      5799


Q ss_pred             Eecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhcc-CC-hhHHHHHHHHHHHhccCCCCCcEE
Q 037127          225 DFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILHD-WN-DEECVKILKKCKEAITSNSKIGKV  293 (307)
Q Consensus       225 ~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~-~~-~~~~~~~L~~~~~~L~p~~~gg~l  293 (307)
                      ++|+ +.+++.|+.      ..++|+|.++|+.+ +.+ .+|+|++.=.... +. .++...+.+.+.+.|++ -+|+++
T Consensus       262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~  340 (385)
T 3ldu_A          262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSY  340 (385)
T ss_dssp             EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEE
Confidence            9999 889998876      34589999999988 333 4999998655332 22 24556777777777764 237888


Q ss_pred             EEEee
Q 037127          294 IIIDM  298 (307)
Q Consensus       294 li~e~  298 (307)
                      .|+..
T Consensus       341 ~iit~  345 (385)
T 3ldu_A          341 YLITS  345 (385)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            88754

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.41  E-value=3.5e-07  Score=86.02  Aligned_cols=104  Identities=15%  Similarity=0.202  Sum_probs=77.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC-CccEEEec
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP-PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p-~~D~i~~~  262 (307)
                      .....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++     ...+|.+..+|..+ +  .+ .||+|++.
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            456779999999999999999988654 68999999 777777765     34579999999876 1  33 49999873


Q ss_pred             h------hh-------ccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          263 W------IL-------HDWNDEEC-------VKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       263 ~------vL-------h~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      -      ++       ..|+.++.       .++|+++.+.|+|   ||+++.....+
T Consensus       183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~  237 (456)
T 3m4x_A          183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTF  237 (456)
T ss_dssp             CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCC
T ss_pred             CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeec
Confidence            2      12       22333221       3789999999999   88887765433

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.41  E-value=1.4e-06  Score=81.70  Aligned_cols=67  Identities=16%  Similarity=0.246  Sum_probs=55.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC-----C--CccEEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI-----P--PADAVV  260 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~-----p--~~D~i~  260 (307)
                      ..+..+|||+|||+|.++..+++.  ..+++++|. +.+++.|++     ..++++|+.+|+.+..     +  .||+|+
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv  361 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL  361 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence            345679999999999999999987  678999999 888888876     2358999999998732     1  489998


Q ss_pred             ec
Q 037127          261 LK  262 (307)
Q Consensus       261 ~~  262 (307)
                      +.
T Consensus       362 ~d  363 (433)
T 1uwv_A          362 LD  363 (433)
T ss_dssp             EC
T ss_pred             EC
Confidence            73

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.41  E-value=7.3e-07  Score=77.33  Aligned_cols=93  Identities=19%  Similarity=0.268  Sum_probs=67.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CCCC-c-cE
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIPP-A-DA  258 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p~-~-D~  258 (307)
                      +.+++.+.  .....+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ...+++++.+|+.+ +++. + +.
T Consensus        21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~   97 (249)
T 3ftd_A           21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL   97 (249)
T ss_dssp             HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred             HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence            44555555  456779999999999999999987 4578999999 888888875 34689999999988 4442 1 45


Q ss_pred             EEechhhccCChhHHHHHHHHHHHh
Q 037127          259 VVLKWILHDWNDEECVKILKKCKEA  283 (307)
Q Consensus       259 i~~~~vLh~~~~~~~~~~L~~~~~~  283 (307)
                      .++.+.=++.+.    .+|.++.+.
T Consensus        98 ~vv~NlPy~i~~----~il~~ll~~  118 (249)
T 3ftd_A           98 KVVGNLPYNVAS----LIIENTVYN  118 (249)
T ss_dssp             EEEEECCTTTHH----HHHHHHHHT
T ss_pred             EEEEECchhccH----HHHHHHHhc
Confidence            666666555544    445555443

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.39  E-value=6.5e-07  Score=82.79  Aligned_cols=100  Identities=13%  Similarity=0.075  Sum_probs=72.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC---CC-CccEEEechhhc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA---IP-PADAVVLKWILH  266 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~---~p-~~D~i~~~~vLh  266 (307)
                      +..+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++    ..-..++.++|+++.   .+ .||+|++.-...
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f  291 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL  291 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred             CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence            4679999999999999999997  445999999 888888876    111235668998772   22 499999863321


Q ss_pred             cCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          267 DWND-------EECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       267 ~~~~-------~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ..+.       ..-..+++.+.+.|+|   ||+++++....
T Consensus       292 ~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s~  329 (393)
T 4dmg_A          292 VKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCSY  329 (393)
T ss_dssp             CSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECCT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence            1111       1235789999999999   88888776544

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.39  E-value=4e-07  Score=88.53  Aligned_cols=128  Identities=16%  Similarity=0.139  Sum_probs=86.0

Q ss_pred             ccccccCCcHHHHHHHHHHHhchhhhHHHHHHhcccc--ccCCCeEEEecCCchHHHHHHH---HHC-CCCeEEEecchH
Q 037127          157 FWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNV--FEGLNSLVDVGGATGTVAKAIA---KAF-PNLECTDFDLPH  230 (307)
Q Consensus       157 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~---~~~-p~~~~~~~Dl~~  230 (307)
                      .|+.+++++-....|.+++...       +.......  ..+...|+|||||+|-++...+   ++. -.+++++++-.+
T Consensus       323 tYevFEkD~vKy~~Ye~AI~~A-------l~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp  395 (637)
T 4gqb_A          323 TYEVFEKDPIKYSQYQQAIYKC-------LLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP  395 (637)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-------HHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred             hhhhhcCChhhHHHHHHHHHHH-------HHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            3677778887777777766532       22211110  1234679999999998844333   332 234789999866


Q ss_pred             HHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127          231 VVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       231 ~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      ++..+++      ..++|+++.+|+.+ ..| .+|+|+.=+.-+....|-....|....+.|||   ||.++
T Consensus       396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGimi  464 (637)
T 4gqb_A          396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVSI  464 (637)
T ss_dssp             HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEEE
T ss_pred             HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEEc
Confidence            6666655      68899999999999 677 49998776655544444445667777788998   67653

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.37  E-value=1.1e-06  Score=77.10  Aligned_cols=90  Identities=16%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC---Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP---PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p---~~  256 (307)
                      +.+++...  .... +|||||||+|.++..+++..  .+++++|+ +.+++.+++  ...+++++.+|+.+ +++   .+
T Consensus        37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~  111 (271)
T 3fut_A           37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG  111 (271)
T ss_dssp             HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred             HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence            44555554  4455 99999999999999999984  68999999 888888876  34689999999988 444   35


Q ss_pred             cEEEechhhccCChhHHHHHHHH
Q 037127          257 DAVVLKWILHDWNDEECVKILKK  279 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~  279 (307)
                      |. ++++.-++.+.+-..++|..
T Consensus       112 ~~-iv~NlPy~iss~il~~ll~~  133 (271)
T 3fut_A          112 SL-LVANLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             EE-EEEEECSSCCHHHHHHHHHH
T ss_pred             cE-EEecCcccccHHHHHHHhcC
Confidence            54 55566666776555555544

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.37  E-value=8e-07  Score=78.68  Aligned_cols=93  Identities=14%  Similarity=0.104  Sum_probs=67.1

Q ss_pred             ccCCCeEEEecC------CchHHHHHHHHHCC-CCeEEEecchHHHHhchhcCCCeEE-EecCCCC-CCC-CccEEEech
Q 037127          194 FEGLNSLVDVGG------ATGTVAKAIAKAFP-NLECTDFDLPHVVNGLESDLANLKY-VGGDMFE-AIP-PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGg------G~G~~~~~l~~~~p-~~~~~~~Dl~~~~~~a~~~~~rv~~-~~~d~~~-~~p-~~D~i~~~~  263 (307)
                      +.+..+||||||      |+|.  ..+++..| +.+++++|+.+.   .    +++++ +.+|+.+ +.+ .||+|++..
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~---v----~~v~~~i~gD~~~~~~~~~fD~Vvsn~  131 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF---V----SDADSTLIGDCATVHTANKWDLIISDM  131 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC---B----CSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC---C----CCCEEEEECccccCCccCcccEEEEcC
Confidence            456779999999      4476  55667776 689999999443   1    47889 9999987 344 599999854


Q ss_pred             hhcc---C--C----hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          264 ILHD---W--N----DEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       264 vLh~---~--~----~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ..+.   +  +    .+....+|+.++++|+|   ||++++...
T Consensus       132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~  172 (290)
T 2xyq_A          132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKIT  172 (290)
T ss_dssp             CCCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             CccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEe
Confidence            3211   0  1    12345789999999999   899888554

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.32  E-value=1.7e-06  Score=76.42  Aligned_cols=100  Identities=15%  Similarity=0.158  Sum_probs=77.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----------cCCCeEEEecCCCCCC---C-CccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----------DLANLKYVGGDMFEAI---P-PADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~~rv~~~~~d~~~~~---p-~~D~i  259 (307)
                      ..+++||-||+|.|..+.++++..|..+++++|+ |.|++.+++          ..+|++++.+|.++-+   + .||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            5678999999999999999999877779999999 889988876          2589999999998732   2 59999


Q ss_pred             EechhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          260 VLKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       260 ~~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ++-..=..-+..  -...+++.++++|+|   ||.++..-
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q~  198 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQN  198 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEE---EEEEEEEE
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCC---CCEEEEec
Confidence            875432111111  114789999999999   77777653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.32  E-value=2.4e-06  Score=79.79  Aligned_cols=91  Identities=13%  Similarity=0.104  Sum_probs=67.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-CccEEEechhhcc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-PADAVVLKWILHD  267 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh~  267 (307)
                      .+..+|||+|||+|.++..+++.  ..+++++|. +.+++.|++     ..+ ++|+.+|+.+..+ .||+|++.-.-..
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g  365 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG  365 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence            45678999999999999999987  458999999 888888876     234 9999999988544 5999998433211


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ..    ..+++.++ .++|   +|.+++.
T Consensus       366 ~~----~~~~~~l~-~l~p---~givyvs  386 (425)
T 2jjq_A          366 LH----PRLVKRLN-REKP---GVIVYVS  386 (425)
T ss_dssp             SC----HHHHHHHH-HHCC---SEEEEEE
T ss_pred             hH----HHHHHHHH-hcCC---CcEEEEE
Confidence            11    13455554 4788   7776664

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.27  E-value=2.5e-06  Score=84.58  Aligned_cols=99  Identities=10%  Similarity=0.106  Sum_probs=74.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cC-CCeEEEecCCCCC---CC-CccEEEech
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DL-ANLKYVGGDMFEA---IP-PADAVVLKW  263 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~-~rv~~~~~d~~~~---~p-~~D~i~~~~  263 (307)
                      +..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++      .. ++++++++|+++.   .. .||+|++.-
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            46789999999999999999853 346999999 888888876      22 5899999999872   22 599999854


Q ss_pred             hhc--------cCC-hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          264 ILH--------DWN-DEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       264 vLh--------~~~-~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      .-.        .|. ...-.++++.+.+.|+|   ||.+++...
T Consensus       618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~~  658 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSNN  658 (703)
T ss_dssp             CSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEC
Confidence            221        121 13456889999999999   788875543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.25  E-value=1.4e-06  Score=75.74  Aligned_cols=64  Identities=13%  Similarity=0.236  Sum_probs=53.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE  251 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~  251 (307)
                      ..+++...  .....+|||||||+|.++..+++..  .+++++|+ +.+++.+++   ..++++++.+|+.+
T Consensus        19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~   86 (255)
T 3tqs_A           19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQ   86 (255)
T ss_dssp             HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTT
T ss_pred             HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHh
Confidence            44555555  5567799999999999999999984  68999999 888888877   34799999999998

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.22  E-value=7.6e-07  Score=78.50  Aligned_cols=69  Identities=14%  Similarity=0.232  Sum_probs=54.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC--CeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CCC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN--LECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIP  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p  254 (307)
                      +.+++.+.  .....+|||||||+|.++..|++..+.  .+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus        32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG  105 (279)
T ss_dssp             HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred             HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence            34555554  456779999999999999999998654  45999999 888888875 35689999999987 443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.14  E-value=2.5e-06  Score=83.09  Aligned_cols=126  Identities=13%  Similarity=0.087  Sum_probs=81.1

Q ss_pred             cccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHH----C---------CCCeEE
Q 037127          158 WEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA----F---------PNLECT  224 (307)
Q Consensus       158 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~---------p~~~~~  224 (307)
                      |+.+++++-+...|.+++...-    ..+.+.    ..+.+.|+|||||+|-++...+++    .         ...+++
T Consensus       379 Ye~fekD~vRy~~Y~~AI~~al----~d~~~~----~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy  450 (745)
T 3ua3_A          379 YNTFEQDQIKYDVYGEAVVGAL----KDLGAD----GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY  450 (745)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHH----HHHHTT----CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred             HHHHcCChhhHHHHHHHHHHHH----HHhhcc----cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence            5666666666666666655421    111110    123568999999999997533222    1         235899


Q ss_pred             Eecc-hHHHHhchh-----cCCCeEEEecCCCC-CC------C-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCC
Q 037127          225 DFDL-PHVVNGLES-----DLANLKYVGGDMFE-AI------P-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKI  290 (307)
Q Consensus       225 ~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~------p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~g  290 (307)
                      ++|- |..+..++.     ..++|+++.+|+.+ ..      | .+|+|+.=+.-+....+-....|..+.+.|+|   |
T Consensus       451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp---~  527 (745)
T 3ua3_A          451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP---T  527 (745)
T ss_dssp             EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---T
T ss_pred             EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---C
Confidence            9998 433322222     67899999999998 44      4 59998877766544555455678888899998   7


Q ss_pred             cEEE
Q 037127          291 GKVI  294 (307)
Q Consensus       291 g~ll  294 (307)
                      |.++
T Consensus       528 Gi~i  531 (745)
T 3ua3_A          528 TISI  531 (745)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            7644

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.13  E-value=2.1e-06  Score=74.59  Aligned_cols=90  Identities=9%  Similarity=0.069  Sum_probs=61.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--CCCeEEEecCCCC-CCCC---
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--LANLKYVGGDMFE-AIPP---  255 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--~~rv~~~~~d~~~-~~p~---  255 (307)
                      ..+++.+.  .....+|||||||+|.++. +. ..+..+++++|+ +.+++.+++ .  .++++++.+|+.+ +++.   
T Consensus        11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~   86 (252)
T 1qyr_A           11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE   86 (252)
T ss_dssp             HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred             HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence            44555554  4556789999999999999 64 444444999999 889998886 2  2589999999988 4332   


Q ss_pred             ---ccEEEechhhccCChhHHHHHH
Q 037127          256 ---ADAVVLKWILHDWNDEECVKIL  277 (307)
Q Consensus       256 ---~D~i~~~~vLh~~~~~~~~~~L  277 (307)
                         .+.+++++.-++.+.+-..++|
T Consensus        87 ~~~~~~~vvsNlPY~i~~~il~~ll  111 (252)
T 1qyr_A           87 KMGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             ccCCceEEEECCCCCccHHHHHHHH
Confidence               2356666655555544333333

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.12  E-value=5e-06  Score=72.42  Aligned_cols=70  Identities=19%  Similarity=0.187  Sum_probs=54.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-h-------HHHHhchh------cCCCeEEEecCCCCC---C---
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-P-------HVVNGLES------DLANLKYVGGDMFEA---I---  253 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~-------~~~~~a~~------~~~rv~~~~~d~~~~---~---  253 (307)
                      .....+|||+|||+|.++..+++.  +.+++++|+ |       .+++.+++      ..+|++++.+|+.+.   +   
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence            344568999999999999999996  568999999 7       66776654      246799999998762   3   


Q ss_pred             -CCccEEEechhh
Q 037127          254 -PPADAVVLKWIL  265 (307)
Q Consensus       254 -p~~D~i~~~~vL  265 (307)
                       ..||+|++.-..
T Consensus       159 ~~~fD~V~~dP~~  171 (258)
T 2r6z_A          159 QGKPDIVYLDPMY  171 (258)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             CCCccEEEECCCC
Confidence             359999985443

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.07  E-value=3.3e-06  Score=77.42  Aligned_cols=89  Identities=9%  Similarity=0.134  Sum_probs=64.9

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---C--------------
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---I--------------  253 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~--------------  253 (307)
                      ..+|||+|||+|.++..+++.  ..+++++|. +.+++.|++     ..++++|+.+|+.+-   .              
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence            468999999999999999885  358999999 888888876     236899999998651   1              


Q ss_pred             --CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          254 --PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       254 --p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                        ..+|+|++.-     |..   .+..++.+.|++   +|+++++..
T Consensus       292 ~~~~fD~Vv~dP-----Pr~---g~~~~~~~~l~~---~g~ivyvsc  327 (369)
T 3bt7_A          292 KSYQCETIFVDP-----PRS---GLDSETEKMVQA---YPRILYISC  327 (369)
T ss_dssp             GGCCEEEEEECC-----CTT---CCCHHHHHHHTT---SSEEEEEES
T ss_pred             ccCCCCEEEECc-----Ccc---ccHHHHHHHHhC---CCEEEEEEC
Confidence              1589987632     211   234455566666   788887753

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.04  E-value=9.5e-06  Score=78.04  Aligned_cols=111  Identities=13%  Similarity=0.114  Sum_probs=77.5

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCC------------------CCeEEEecc-hHHHHhchh-----c
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP------------------NLECTDFDL-PHVVNGLES-----D  238 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p------------------~~~~~~~Dl-~~~~~~a~~-----~  238 (307)
                      +..+++.+.  .....+|+|.+||+|.++..+.+...                  ..+++++|+ +.+++.|+.     .
T Consensus       158 v~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g  235 (541)
T 2ar0_A          158 IKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD  235 (541)
T ss_dssp             HHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC
Confidence            344444433  34456899999999999998876532                  247999999 777777765     2


Q ss_pred             CC-----CeEEEecCCCCC----CCCccEEEechhhccCC------------hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          239 LA-----NLKYVGGDMFEA----IPPADAVVLKWILHDWN------------DEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       239 ~~-----rv~~~~~d~~~~----~p~~D~i~~~~vLh~~~------------~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      .+     ++.+.++|.+..    ...||+|++.=......            .+....+++++.+.|+|   ||++.++-
T Consensus       236 i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~  312 (541)
T 2ar0_A          236 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVV  312 (541)
T ss_dssp             CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEe
Confidence            22     278999999872    23699998865443211            11224789999999998   89988875


Q ss_pred             e
Q 037127          298 M  298 (307)
Q Consensus       298 ~  298 (307)
                      +
T Consensus       313 p  313 (541)
T 2ar0_A          313 P  313 (541)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.04  E-value=2e-05  Score=78.17  Aligned_cols=113  Identities=10%  Similarity=0.049  Sum_probs=76.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHH------------------------------------------CCCC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA------------------------------------------FPNL  221 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~------------------------------------------~p~~  221 (307)
                      ..++....  +.+...|||.+||+|.++++.+..                                          .+..
T Consensus       180 a~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~  257 (703)
T 3v97_A          180 AAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS  257 (703)
T ss_dssp             HHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence            44455444  455678999999999999988764                                          2346


Q ss_pred             eEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-CC----CccEEEechhhcc-CC-hhHHHHHHHHHHHhccCC
Q 037127          222 ECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-IP----PADAVVLKWILHD-WN-DEECVKILKKCKEAITSN  287 (307)
Q Consensus       222 ~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-~p----~~D~i~~~~vLh~-~~-~~~~~~~L~~~~~~L~p~  287 (307)
                      +++++|+ +.+++.|+.      ..++|+|..+|+.+- .|    .+|+|+++=.... +. .++...+.+.+.+.++..
T Consensus       258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~  337 (703)
T 3v97_A          258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ  337 (703)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence            8999999 889988876      456799999999872 22    5899988743321 22 234455566555555411


Q ss_pred             CCCcEEEEEee
Q 037127          288 SKIGKVIIIDM  298 (307)
Q Consensus       288 ~~gg~lli~e~  298 (307)
                      -|||+++|+..
T Consensus       338 ~~g~~~~ilt~  348 (703)
T 3v97_A          338 FGGWNLSLFSA  348 (703)
T ss_dssp             CTTCEEEEEES
T ss_pred             CCCCeEEEEeC
Confidence            12899988754

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=98.01  E-value=0.00012  Score=66.12  Aligned_cols=104  Identities=16%  Similarity=0.202  Sum_probs=87.5

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh----c----------------------CCCeEEEecC
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES----D----------------------LANLKYVGGD  248 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~----------------------~~rv~~~~~d  248 (307)
                      .+...||.+|||.......+...+|+++++-+|.|.+++.-++    .                      .+++.+++.|
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            3567899999999999999999888999999999998776443    1                      3789999999


Q ss_pred             CCCC---------C--C-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          249 MFEA---------I--P-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       249 ~~~~---------~--p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +.+.         .  + ...++++--+|++++.+++..+|+.+.+.++    +|.+++.|.+.+.
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~~----~~~~v~~e~i~~~  237 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS----HGLWISYDPIGGS  237 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS----SEEEEEEEECCCC
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhCC----CcEEEEEeccCCC
Confidence            9872         1  1 2688899999999999999999999999884    6889999998873

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.99  E-value=1.5e-05  Score=73.18  Aligned_cols=92  Identities=13%  Similarity=0.024  Sum_probs=71.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c---------------C-CCeEEEecCCCCC--
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D---------------L-ANLKYVGGDMFEA--  252 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~---------------~-~rv~~~~~d~~~~--  252 (307)
                      ...+|||+|||+|..+..++++.+..+++++|+ +..++.+++    .               . ++++++.+|+.+.  
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            466899999999999999999988889999999 888887775    2               2 2389999998762  


Q ss_pred             -CC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          253 -IP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       253 -~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                       .+ .||+|++.=    +..  ...+|..+.+.+++   ||.+++.
T Consensus       127 ~~~~~fD~I~lDP----~~~--~~~~l~~a~~~lk~---gG~l~vt  163 (378)
T 2dul_A          127 ERHRYFHFIDLDP----FGS--PMEFLDTALRSAKR---RGILGVT  163 (378)
T ss_dssp             HSTTCEEEEEECC----SSC--CHHHHHHHHHHEEE---EEEEEEE
T ss_pred             hccCCCCEEEeCC----CCC--HHHHHHHHHHhcCC---CCEEEEE
Confidence             23 599988532    111  14789999999998   7877665

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.96  E-value=1.8e-05  Score=68.66  Aligned_cols=99  Identities=10%  Similarity=0.022  Sum_probs=62.0

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhc----CCCeEEEecCCCC-CCC--CccEEEechhhc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESD----LANLKYVGGDMFE-AIP--PADAVVLKWILH  266 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~----~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh  266 (307)
                      +....+|||||||+|.++..+++..+-.++.++|+..-+..-...    ...+.....++.. .++  .+|+|++....+
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn  151 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES  151 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence            566779999999999999999887665566666663111100101    1133334444321 233  499999877544


Q ss_pred             ---cCChh-HHHHHHHHHHHhccCCCCC-cEEEE
Q 037127          267 ---DWNDE-ECVKILKKCKEAITSNSKI-GKVII  295 (307)
Q Consensus       267 ---~~~~~-~~~~~L~~~~~~L~p~~~g-g~lli  295 (307)
                         .|.|. ....+|+-+.+.|+|   | |.+++
T Consensus       152 sG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~  182 (277)
T 3evf_A          152 SSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV  182 (277)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred             cCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE
Confidence               23333 334578999999999   8 87776

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.95  E-value=5.8e-05  Score=69.03  Aligned_cols=103  Identities=20%  Similarity=0.313  Sum_probs=71.2

Q ss_pred             CCeEEEecCCchHHHHHH--------HHHC-------CCCeEEEecchH-----HHHhchhcCC-------------C--
Q 037127          197 LNSLVDVGGATGTVAKAI--------AKAF-------PNLECTDFDLPH-----VVNGLESDLA-------------N--  241 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l--------~~~~-------p~~~~~~~Dl~~-----~~~~a~~~~~-------------r--  241 (307)
                      ..+|+|+|||+|..+..+        .+++       |.+++..-|+|.     +-........             +  
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            588999999999887766        3343       788999999953     1111111100             1  


Q ss_pred             -eEEEecCCCC-CCC--CccEEEechhhccCCh------------------------------------hHHHHHHHHHH
Q 037127          242 -LKYVGGDMFE-AIP--PADAVVLKWILHDWND------------------------------------EECVKILKKCK  281 (307)
Q Consensus       242 -v~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~------------------------------------~~~~~~L~~~~  281 (307)
                       +.-+++.|.. .+|  .+|+++.+.+||-.++                                    ++-..+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3445677776 466  4999999999996552                                    13345799999


Q ss_pred             HhccCCCCCcEEEEEeeecCC
Q 037127          282 EAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       282 ~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +.|+|   ||++++.=...++
T Consensus       213 ~eL~p---GG~mvl~~~gr~~  230 (374)
T 3b5i_A          213 AEVKR---GGAMFLVCLGRTS  230 (374)
T ss_dssp             HHEEE---EEEEEEEEEECCC
T ss_pred             HHhCC---CCEEEEEEecCCC
Confidence            99999   8888877665543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.87  E-value=1.3e-05  Score=73.90  Aligned_cols=93  Identities=12%  Similarity=0.016  Sum_probs=71.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh------cCCC-eEEEecCCCC--C--CC-CccEEEe
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES------DLAN-LKYVGGDMFE--A--IP-PADAVVL  261 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------~~~r-v~~~~~d~~~--~--~p-~~D~i~~  261 (307)
                      +..+|||++||+|.++..++++.++ .+++++|+ +..++.+++      ..++ ++++.+|.++  .  .+ .||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            4678999999999999999998765 57999999 888888876      3455 9999999865  2  23 4999987


Q ss_pred             chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      .=    +...  ..++..+.+.|++   ||.|++.-
T Consensus       132 DP----~g~~--~~~l~~a~~~Lk~---gGll~~t~  158 (392)
T 3axs_A          132 DP----FGTP--VPFIESVALSMKR---GGILSLTA  158 (392)
T ss_dssp             CC----SSCC--HHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CC----CcCH--HHHHHHHHHHhCC---CCEEEEEe
Confidence            54    2211  3689999999998   78666654

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.87  E-value=4.9e-05  Score=67.87  Aligned_cols=68  Identities=13%  Similarity=0.176  Sum_probs=54.7

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---C---CCccEEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---I---PPADAVV  260 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~---p~~D~i~  260 (307)
                      .....+|||+|||+|..+..+++.. +..+++++|+ +..++.+++     ...+|+++.+|+.+.   .   ..||.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            4556799999999999999999875 5579999999 777777765     346899999998762   1   2489998


Q ss_pred             e
Q 037127          261 L  261 (307)
Q Consensus       261 ~  261 (307)
                      +
T Consensus       180 ~  180 (309)
T 2b9e_A          180 L  180 (309)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.81  E-value=1.5e-05  Score=69.30  Aligned_cols=107  Identities=15%  Similarity=0.111  Sum_probs=67.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecch-HHHHhchh---cCCC-eEEEec-CCCCCCC-Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLP-HVVNGLES---DLAN-LKYVGG-DMFEAIP-PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~-~~~~~a~~---~~~r-v~~~~~-d~~~~~p-~~  256 (307)
                      .++.+.+.  +....+|||||||+|.|+..+++..+-..++++|+. .....+..   .... +.+... |+..-.+ .+
T Consensus        80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~  157 (282)
T 3gcz_A           80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG  157 (282)
T ss_dssp             HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence            44555553  667779999999999999999987776678888882 21111110   1222 344433 4433122 59


Q ss_pred             cEEEechhhc----cCChhHHHHHHHHHHHhccCCCCC--cEEEE
Q 037127          257 DAVVLKWILH----DWNDEECVKILKKCKEAITSNSKI--GKVII  295 (307)
Q Consensus       257 D~i~~~~vLh----~~~~~~~~~~L~~~~~~L~p~~~g--g~lli  295 (307)
                      |+|++...-+    ..+......+|.-+.+.|+|   |  |.+++
T Consensus       158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~  199 (282)
T 3gcz_A          158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI  199 (282)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred             CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE
Confidence            9999887665    11112234578888899998   6  77765

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.78  E-value=5.5e-05  Score=59.35  Aligned_cols=74  Identities=19%  Similarity=0.121  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCch-HHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC----CccEEEechhhccCC
Q 037127          196 GLNSLVDVGGATG-TVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP----PADAVVLKWILHDWN  269 (307)
Q Consensus       196 ~~~~vlDvGgG~G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p----~~D~i~~~~vLh~~~  269 (307)
                      ...+|||||||+| ..+..|++.. +..++++|+ |..++          ++..|+|++..    +||+|...+     |
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~----------~v~dDiF~P~~~~Y~~~DLIYsir-----P   98 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG----------IVRDDITSPRMEIYRGAALIYSIR-----P   98 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT----------EECCCSSSCCHHHHTTEEEEEEES-----C
T ss_pred             CCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc----------eEEccCCCCcccccCCcCEEEEcC-----C
Confidence            4569999999999 5888888742 688999998 44332          89999999754    689986655     4


Q ss_pred             hhHHHHHHHHHHHhcc
Q 037127          270 DEECVKILKKCKEAIT  285 (307)
Q Consensus       270 ~~~~~~~L~~~~~~L~  285 (307)
                      ..|.+..|.++++...
T Consensus        99 P~El~~~i~~lA~~v~  114 (153)
T 2k4m_A           99 PAEIHSSLMRVADAVG  114 (153)
T ss_dssp             CTTTHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            4455677777777764

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.71  E-value=0.00018  Score=65.21  Aligned_cols=95  Identities=14%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCCC---CccEEEechhhccCCh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIP---PADAVVLKWILHDWND  270 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~p---~~D~i~~~~vLh~~~~  270 (307)
                      +..+.++||+||++|.++..++++  +.+++++|..++-.... ..++|+++.+|.+...|   .+|++++-++.+   .
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~-~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p  282 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLM-DTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---P  282 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHH-TTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---H
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhc-cCCCeEEEeCccccccCCCCCcCEEEEcCCCC---h
Confidence            466889999999999999999998  67999999844433333 46799999999998433   489999987764   2


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          271 EECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      .....++.+.......   ++.|+.+.
T Consensus       283 ~~~~~l~~~wl~~~~~---~~aI~~lK  306 (375)
T 4auk_A          283 AKVAALMAQWLVNGWC---RETIFNLK  306 (375)
T ss_dssp             HHHHHHHHHHHHTTSC---SEEEEEEE
T ss_pred             HHhHHHHHHHHhcccc---ceEEEEEE
Confidence            3334444444333332   34544443

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.67  E-value=0.00013  Score=63.78  Aligned_cols=75  Identities=16%  Similarity=0.176  Sum_probs=59.7

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-C-----C-
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-A-----I-  253 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~-----~-  253 (307)
                      .++++..+.  ..+...+||.+||.|.++..|+++  +.+++++|. |.+++.+++ ..+|++++.+||.+ +     . 
T Consensus        11 l~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g   86 (285)
T 1wg8_A           11 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG   86 (285)
T ss_dssp             HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcC
Confidence            456666665  556779999999999999999998  679999999 888888876 22699999999976 1     1 


Q ss_pred             -CCccEEEe
Q 037127          254 -PPADAVVL  261 (307)
Q Consensus       254 -p~~D~i~~  261 (307)
                       ..+|.|++
T Consensus        87 ~~~vDgIL~   95 (285)
T 1wg8_A           87 VERVDGILA   95 (285)
T ss_dssp             CSCEEEEEE
T ss_pred             CCCcCEEEe
Confidence             24788875

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.62  E-value=6.2e-05  Score=72.36  Aligned_cols=99  Identities=15%  Similarity=0.107  Sum_probs=69.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHCC---------------CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-C-
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFP---------------NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-A-  252 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p---------------~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~-  252 (307)
                      ..+|+|.+||+|.++..+++..+               ..+++|+|+ +.++..|+.      ...++.+.++|.+. + 
T Consensus       245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~  324 (544)
T 3khk_A          245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ  324 (544)
T ss_dssp             SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred             CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence            34999999999999988865432               468999999 777777765      23345558899876 3 


Q ss_pred             CC--CccEEEechhhc--cCChh-------------------------HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          253 IP--PADAVVLKWILH--DWNDE-------------------------ECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       253 ~p--~~D~i~~~~vLh--~~~~~-------------------------~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      .+  .||+|++.=...  .|..+                         ....+++++.+.|+|   ||++.++-+
T Consensus       325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVlP  396 (544)
T 3khk_A          325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLLA  396 (544)
T ss_dssp             CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEec
Confidence            22  499998853332  23211                         113689999999999   899877743

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.57  E-value=0.00013  Score=66.52  Aligned_cols=98  Identities=16%  Similarity=0.070  Sum_probs=72.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c------------CCCeEEEecCCCCC-------C
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D------------LANLKYVGGDMFEA-------I  253 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~------------~~rv~~~~~d~~~~-------~  253 (307)
                      .++++||=||+|.|..+.++++. |..+++.+|+ |.|++.+++ .            .+|++++.+|.++-       .
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~  282 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG  282 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence            34689999999999999999985 5578999999 889998876 1            25799999998751       1


Q ss_pred             CCccEEEechhhcc-------CCh-hHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          254 PPADAVVLKWILHD-------WND-EECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       254 p~~D~i~~~~vLh~-------~~~-~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ..||+|+.--.-..       ... .-...+++.++++|+|   ||.++..
T Consensus       283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~Q  330 (381)
T 3c6k_A          283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ  330 (381)
T ss_dssp             CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred             CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence            25999987632111       011 1135789999999999   7776653

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.57  E-value=0.00025  Score=64.94  Aligned_cols=103  Identities=17%  Similarity=0.233  Sum_probs=69.0

Q ss_pred             CCeEEEecCCchHHHHHHHHH-----------------CCCCeEEEecch-----------H-HHHhchh-c--CCCeEE
Q 037127          197 LNSLVDVGGATGTVAKAIAKA-----------------FPNLECTDFDLP-----------H-VVNGLES-D--LANLKY  244 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~-----------------~p~~~~~~~Dl~-----------~-~~~~a~~-~--~~rv~~  244 (307)
                      ..+|+|+||++|..+..++..                 .|.++++.-|+|           + ..+.+++ .  ..+-.|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            678999999999888877665                 578899999997           1 1111111 1  123344


Q ss_pred             E---ecCCCC-CCC--CccEEEechhhccCChh-------------------------HH------------HHHHHHHH
Q 037127          245 V---GGDMFE-AIP--PADAVVLKWILHDWNDE-------------------------EC------------VKILKKCK  281 (307)
Q Consensus       245 ~---~~d~~~-~~p--~~D~i~~~~vLh~~~~~-------------------------~~------------~~~L~~~~  281 (307)
                      +   ++.|+. .+|  .+|+++.+.+||-.++.                         .+            ..+|+..+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4   456665 466  49999999999943321                         11            23488889


Q ss_pred             HhccCCCCCcEEEEEeeecCC
Q 037127          282 EAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       282 ~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +.|+|   ||++++.-...+.
T Consensus       213 ~eL~p---GG~mvl~~~gr~~  230 (384)
T 2efj_A          213 EELIS---RGRMLLTFICKED  230 (384)
T ss_dssp             HHEEE---EEEEEEEEECCCT
T ss_pred             HHhcc---CCeEEEEEecCCC
Confidence            99999   8888877665544

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.55  E-value=0.00012  Score=63.55  Aligned_cols=67  Identities=19%  Similarity=0.245  Sum_probs=50.6

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------c--C-CCeEEEecCCCC---CCC-CccE
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------D--L-ANLKYVGGDMFE---AIP-PADA  258 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~--~-~rv~~~~~d~~~---~~p-~~D~  258 (307)
                      .+|||+|||+|..+..++++  +.+++++|. +.+++.+++           .  . +|++++++|..+   ..+ .||+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv  167 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence            78999999999999999998  568999999 544333322           1  1 689999999865   233 5999


Q ss_pred             EEechhhc
Q 037127          259 VVLKWILH  266 (307)
Q Consensus       259 i~~~~vLh  266 (307)
                      |++.-..+
T Consensus       168 V~lDP~y~  175 (258)
T 2oyr_A          168 VYLDPMFP  175 (258)
T ss_dssp             EEECCCCC
T ss_pred             EEEcCCCC
Confidence            98865544

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.53  E-value=5.2e-05  Score=70.08  Aligned_cols=65  Identities=14%  Similarity=0.109  Sum_probs=53.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c--C-CCeEEEecCCCCC--C---CCccEEEec
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D--L-ANLKYVGGDMFEA--I---PPADAVVLK  262 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~--~-~rv~~~~~d~~~~--~---p~~D~i~~~  262 (307)
                      ...+|||+|||+|..+..+++.  ..+++++|. +.+++.++.    .  . ++++++++|+.+.  .   ..||+|++.
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            3679999999999999999887  468999999 888888876    2  2 5799999999873  2   259999883

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.51  E-value=0.00042  Score=68.73  Aligned_cols=100  Identities=13%  Similarity=0.076  Sum_probs=69.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC---CCeEEEecc-hHHHHhc--hh---------cCCCeEEEecCCCCC----CCCc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFP---NLECTDFDL-PHVVNGL--ES---------DLANLKYVGGDMFEA----IPPA  256 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p---~~~~~~~Dl-~~~~~~a--~~---------~~~rv~~~~~d~~~~----~p~~  256 (307)
                      ...+|+|.|||+|.++..+++..+   ..+++++|+ +.+++.|  +.         ..+...+...|++.+    ...|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            467999999999999999999876   357999999 7777766  32         112246667777762    2259


Q ss_pred             cEEEechhhcc-CChh--------------------------HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          257 DAVVLKWILHD-WNDE--------------------------ECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       257 D~i~~~~vLh~-~~~~--------------------------~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      |+|++.=..-. +..+                          -...+++++.+.|++   ||++.++-+
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP  466 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP  466 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence            99987543311 1111                          123578899999998   899887654

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.40  E-value=0.00053  Score=62.21  Aligned_cols=105  Identities=17%  Similarity=0.217  Sum_probs=70.1

Q ss_pred             cCCCeEEEecCCchHHHHHHH--------H--------HCCCCeEEEecchH-HHH-hchhcC-----CCeEE---EecC
Q 037127          195 EGLNSLVDVGGATGTVAKAIA--------K--------AFPNLECTDFDLPH-VVN-GLESDL-----ANLKY---VGGD  248 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~--------~--------~~p~~~~~~~Dl~~-~~~-~a~~~~-----~rv~~---~~~d  248 (307)
                      ++..+|+|+||++|..+..+.        +        ..|..+++.-|+|. .-. ..+.+.     .+-.|   +++.
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence            445789999999996654332        2        25778899999953 122 222211     13333   5567


Q ss_pred             CCC-CCC--CccEEEechhhccCCh-------------------------------hHHHHHHHHHHHhccCCCCCcEEE
Q 037127          249 MFE-AIP--PADAVVLKWILHDWND-------------------------------EECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       249 ~~~-~~p--~~D~i~~~~vLh~~~~-------------------------------~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      |+. .+|  .+|+++.+..||-.++                               ++-..+|+..++.|+|   ||+++
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mv  206 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV  206 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Confidence            776 566  4999999999994332                               1234579999999999   99998


Q ss_pred             EEeeecCC
Q 037127          295 IIDMMREN  302 (307)
Q Consensus       295 i~e~~~~~  302 (307)
                      +.=...++
T Consensus       207 l~~~gr~~  214 (359)
T 1m6e_X          207 LTILGRRS  214 (359)
T ss_dssp             EEEEECSS
T ss_pred             EEEecCCC
Confidence            87665544

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.38  E-value=0.00021  Score=62.49  Aligned_cols=100  Identities=11%  Similarity=0.088  Sum_probs=63.9

Q ss_pred             cccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchH-HHHhch--h--cCCCeEEEec-CCCCCCC-CccEEEechhh
Q 037127          193 VFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPH-VVNGLE--S--DLANLKYVGG-DMFEAIP-PADAVVLKWIL  265 (307)
Q Consensus       193 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~-~~~~a~--~--~~~rv~~~~~-d~~~~~p-~~D~i~~~~vL  265 (307)
                      .+.+..+||||||++|.|+..+++..+-..++++|+.. ......  .  ..+-+.+..+ |++.-.+ .+|++++...-
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~AP  157 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGE  157 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcC
Confidence            35678899999999999999999876666788888832 110100  0  1123445444 5554222 59999886554


Q ss_pred             c----cCChhHHHHHHHHHHHhccCCCCC-cEEEE
Q 037127          266 H----DWNDEECVKILKKCKEAITSNSKI-GKVII  295 (307)
Q Consensus       266 h----~~~~~~~~~~L~~~~~~L~p~~~g-g~lli  295 (307)
                      +    ..+......+|.-+.+.|+|   | |.+++
T Consensus       158 nsG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~  189 (300)
T 3eld_A          158 SSSNPLVERDRTMKVLENFERWKHV---NTENFCV  189 (300)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEE
Confidence            4    11111235678888899998   8 87775

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.35  E-value=0.00063  Score=65.26  Aligned_cols=100  Identities=14%  Similarity=0.107  Sum_probs=72.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHC---CCCeEEEecc-hHHHHhchh-----cC--CCeEEEecCCCCC-CC-----CccE
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAF---PNLECTDFDL-PHVVNGLES-----DL--ANLKYVGGDMFEA-IP-----PADA  258 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~-----~~--~rv~~~~~d~~~~-~p-----~~D~  258 (307)
                      ...+|+|.+||+|.++..+++..   +..+++|+|+ +.+...|+.     ..  +++.+.++|.+.. .|     .||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            45799999999999999998885   3578999999 777777764     12  5688999999873 22     4999


Q ss_pred             EEechhhc-cCC------------------h--hHHHHHHHHHHHhcc-CCCCCcEEEEEee
Q 037127          259 VVLKWILH-DWN------------------D--EECVKILKKCKEAIT-SNSKIGKVIIIDM  298 (307)
Q Consensus       259 i~~~~vLh-~~~------------------~--~~~~~~L~~~~~~L~-p~~~gg~lli~e~  298 (307)
                      |+..=... .|.                  .  .....+++++.+.|+ +   ||++.++-+
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~VlP  359 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVLP  359 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEEE
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEec
Confidence            98652211 121                  1  011358999999999 8   899877644

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.34  E-value=0.0017  Score=54.07  Aligned_cols=93  Identities=14%  Similarity=0.099  Sum_probs=64.3

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------c--CCCeEEEecCCCCC------------
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------D--LANLKYVGGDMFEA------------  252 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~--~~rv~~~~~d~~~~------------  252 (307)
                      ..+.++||++|||  +.+..+++ .++.+++.+|. +...+.+++      .  .++|+++.+|..+-            
T Consensus        28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~  104 (202)
T 3cvo_A           28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW  104 (202)
T ss_dssp             HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred             hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence            3457799999984  66667776 45789999998 777777765      3  67899999996431            


Q ss_pred             ------------C---CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          253 ------------I---PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       253 ------------~---p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                                  .   ..||+|++---      . ....+..+.+.|+|   ||.| |+|.+.
T Consensus       105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~------k-~~~~~~~~l~~l~~---GG~I-v~DNv~  156 (202)
T 3cvo_A          105 RSYPDYPLAVWRTEGFRHPDVVLVDGR------F-RVGCALATAFSITR---PVTL-LFDDYS  156 (202)
T ss_dssp             GGTTHHHHGGGGCTTCCCCSEEEECSS------S-HHHHHHHHHHHCSS---CEEE-EETTGG
T ss_pred             hhHHHHhhhhhccccCCCCCEEEEeCC------C-chhHHHHHHHhcCC---CeEE-EEeCCc
Confidence                        1   24899988752      1 12445556688998   6655 666643

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.27  E-value=0.0036  Score=55.69  Aligned_cols=103  Identities=14%  Similarity=0.109  Sum_probs=78.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh--------cCCCeEEEecCCCCCC----------C-C
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES--------DLANLKYVGGDMFEAI----------P-P  255 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~~~----------p-~  255 (307)
                      .+...||+||||-=.....+.. .++++++-+|.|.+++..++        ..++..+++.|+.+..          + .
T Consensus       101 ~g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          101 DGIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA  179 (310)
T ss_dssp             TTCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             hCCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence            3456899999997776555542 12478999999999887766        2568999999998621          1 2


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      .-++++-.+||++++++...+|+.+.+.+.|    |..+++|.+.++
T Consensus       180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~  222 (310)
T 2uyo_A          180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLH  222 (310)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTT
T ss_pred             CEEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCC
Confidence            5678888899999999999999999999887    556677776554

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.25  E-value=0.00022  Score=61.92  Aligned_cols=93  Identities=22%  Similarity=0.254  Sum_probs=63.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHH-------CCC-----CeEEEecc-h---HHHH-----------hchh-----------
Q 037127          196 GLNSLVDVGGATGTVAKAIAKA-------FPN-----LECTDFDL-P---HVVN-----------GLES-----------  237 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~-------~p~-----~~~~~~Dl-~---~~~~-----------~a~~-----------  237 (307)
                      +..+|||||+|+|..+..+++.       .|+     ++++.++. |   +.+.           .+++           
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4578999999999988887665       674     68899997 4   2222           2221           


Q ss_pred             --------cCCCeEEEecCCCC---CCC-----CccEEEechhh----cc-CChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          238 --------DLANLKYVGGDMFE---AIP-----PADAVVLKWIL----HD-WNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       238 --------~~~rv~~~~~d~~~---~~p-----~~D~i~~~~vL----h~-~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                              ...+++++.+|+.+   ..+     .||+|++--.-    +. |.    ..+|+.+++.|+|   ||+++.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~----~~~l~~l~~~L~p---GG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWT----QNLFNAMARLARP---GGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCC----HHHHHHHHHHEEE---EEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcC----HHHHHHHHHHcCC---CcEEEE
Confidence                    01357789999866   222     48999885311    11 33    4789999999999   888775

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=97.14  E-value=0.00021  Score=48.55  Aligned_cols=55  Identities=13%  Similarity=0.265  Sum_probs=44.5

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT  104 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t  104 (307)
                      +..|++.|...+.++|..|||+.+|+   +...+.+.+..|...|++....          .+.|+++
T Consensus        12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~----------~G~y~lg   66 (67)
T 2heo_A           12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS----------PKYWSIG   66 (67)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE----------TTEEEEC
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC----------CceEeeC
Confidence            33466666654468999999999999   6899999999999999988754          5788764

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=97.11  E-value=0.00025  Score=53.19  Aligned_cols=63  Identities=19%  Similarity=0.256  Sum_probs=52.6

Q ss_pred             hCCcccccccCCCCCCHHHHHHHc--CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSAL--TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD  113 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~--g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~  113 (307)
                      +..|++.|..+ ++.|+.+||+.+  ++   ....+++.|+.|...|+++..+          .+.|++|+.++.+...
T Consensus        15 d~~IL~~L~~~-g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~----------rg~Y~LT~~G~~~l~~   79 (111)
T 3b73_A           15 DDRILEIIHEE-GNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA----------NGVYVITEEGEAYLNG   79 (111)
T ss_dssp             HHHHHHHHHHH-SCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS----------TTCEEECHHHHHHHTT
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC----------CceEEECchHHHHHHH
Confidence            34566777654 799999999999  99   6799999999999999999875          4699999999866544

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.00  E-value=0.00076  Score=57.04  Aligned_cols=101  Identities=14%  Similarity=0.119  Sum_probs=65.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHh----chh-cCCCeEEEec-CCCCCCC-Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNG----LES-DLANLKYVGG-DMFEAIP-PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~----a~~-~~~rv~~~~~-d~~~~~p-~~  256 (307)
                      .++.+.+.  +....+||||||++|.++...+......+++++|+-..-..    .+. ..+-|+|+.+ |++.-.| .+
T Consensus        68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~  145 (267)
T 3p8z_A           68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC  145 (267)
T ss_dssp             HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence            45566664  66777999999999999998888776668999999222111    111 4577999999 9765222 48


Q ss_pred             cEEEechhhccCC-hhHHHH---HHHHHHHhccC
Q 037127          257 DAVVLKWILHDWN-DEECVK---ILKKCKEAITS  286 (307)
Q Consensus       257 D~i~~~~vLh~~~-~~~~~~---~L~~~~~~L~p  286 (307)
                      |.++|-.-=..=+ .-|..+   .|.-+.+.|++
T Consensus       146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~  179 (267)
T 3p8z_A          146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN  179 (267)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS
T ss_pred             cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc
Confidence            9888765432111 113333   44545566775

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=96.97  E-value=0.00047  Score=50.16  Aligned_cols=63  Identities=14%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             HHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127           30 MSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL  109 (307)
Q Consensus        30 ~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~  109 (307)
                      .++..-.++.|+..| .  ++.|+.|||+.+|+   +...+.+.|+.|...|++.+..           +.|++++.++.
T Consensus        26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~-----------g~y~l~~~g~~   88 (96)
T 1y0u_A           26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG-----------ERWVVTDAGKI   88 (96)
T ss_dssp             HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-----------TEEEECTTTCC
T ss_pred             HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC-----------CEEEECCCchH
Confidence            444455567788888 5  78999999999999   6789999999999999999873           58999987653

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.93  E-value=0.0018  Score=55.57  Aligned_cols=105  Identities=15%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHH--CCC--CeEEEecchHHHHhchhcCCCe---EEEec-CCCCCCC-
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA--FPN--LECTDFDLPHVVNGLESDLANL---KYVGG-DMFEAIP-  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~--~p~--~~~~~~Dl~~~~~~a~~~~~rv---~~~~~-d~~~~~p-  254 (307)
                      .++.+.+  .+.+..+|||+||+.|.++...++.  ...  -.+++.|+ +..+... ....+   .|+.+ |+++..+ 
T Consensus        63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~-~~~Gv~~i~~~~G~Df~~~~~~  138 (269)
T 2px2_A           63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLM-QSYGWNIVTMKSGVDVFYKPSE  138 (269)
T ss_dssp             HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCC-CSTTGGGEEEECSCCGGGSCCC
T ss_pred             HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcc-cCCCceEEEeeccCCccCCCCC
Confidence            4555554  3778899999999999999999885  211  12244442 1110100 11344   66667 9998444 


Q ss_pred             CccEEEechhhc---cCChhH-HHHHHHHHHHhccCCCCCc-EEEE
Q 037127          255 PADAVVLKWILH---DWNDEE-CVKILKKCKEAITSNSKIG-KVII  295 (307)
Q Consensus       255 ~~D~i~~~~vLh---~~~~~~-~~~~L~~~~~~L~p~~~gg-~lli  295 (307)
                      .+|+|++-..=.   ...|.. ....|.-+.+.|+|   || .+++
T Consensus       139 ~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv  181 (269)
T 2px2_A          139 ISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI  181 (269)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred             CCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence            599998766321   111211 22346666688998   77 6655

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=96.87  E-value=0.00063  Score=47.63  Aligned_cols=60  Identities=12%  Similarity=0.098  Sum_probs=48.4

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcc-cHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTR-CVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~-~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      +-.|++.|... ||.|+.+||+.+|+   ... .+++.|..|...|++++.+.        +...|.+|+.++
T Consensus        13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgi---t~~~aVr~hL~~Le~eGlV~~~~~--------gRP~w~LT~~g~   73 (79)
T 1xmk_A           13 KEKICDYLFNV-SDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGT--------TPPIWHLTDKKR   73 (79)
T ss_dssp             HHHHHHHHHHT-CCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECS--------SSCEEEECHHHH
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHcCC---CcHHHHHHHHHHHHHCCCEEecCC--------CCCCeEeCHhHH
Confidence            33455666665 79999999999999   466 99999999999999997752        234899999886

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.84  E-value=0.0024  Score=57.05  Aligned_cols=67  Identities=10%  Similarity=0.095  Sum_probs=56.0

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE  251 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~  251 (307)
                      .++++..+.  ..+...+||..+|.|.++..|++.. |+.+++++|. |.+++.++. ..+|++++.++|.+
T Consensus        46 l~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~  115 (347)
T 3tka_A           46 LDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA  115 (347)
T ss_dssp             THHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred             HHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            466777666  5667899999999999999999985 7889999999 888888755 46799999998866

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.76  E-value=0.0036  Score=54.67  Aligned_cols=106  Identities=13%  Similarity=0.150  Sum_probs=67.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHH-HH---hchh-cCCCeEEEec-CCCCCC-CCc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHV-VN---GLES-DLANLKYVGG-DMFEAI-PPA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~-~~---~a~~-~~~rv~~~~~-d~~~~~-p~~  256 (307)
                      .++.+.+.  +....+||||||++|.++...+....-.+++++|+-.. -+   ..++ ...-|.|+.+ |++.-. ..+
T Consensus        84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~  161 (321)
T 3lkz_A           84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC  161 (321)
T ss_dssp             HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence            44555544  56677999999999999998887776567999999221 00   0111 1234899998 976622 248


Q ss_pred             cEEEechhhccCChh--HH---HHHHHHHHHhccCCCCC-cEEEE
Q 037127          257 DAVVLKWILHDWNDE--EC---VKILKKCKEAITSNSKI-GKVII  295 (307)
Q Consensus       257 D~i~~~~vLh~~~~~--~~---~~~L~~~~~~L~p~~~g-g~lli  295 (307)
                      |+++|--- .--+..  |.   .+.|.-+.+.|++   + |-++|
T Consensus       162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~  202 (321)
T 3lkz_A          162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV  202 (321)
T ss_dssp             SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE
T ss_pred             CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE
Confidence            98887665 322322  22   3355555678876   4 55554

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=96.72  E-value=0.00067  Score=59.40  Aligned_cols=58  Identities=14%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      +.|+++|...+++.|+.|||+++|+   +...+.|+|..|...||+++++          +++|++++...
T Consensus        33 l~IL~~l~~~~~~ltl~eia~~lgl---~ksTv~RlL~tL~~~G~v~~~~----------~~~Y~LG~~~~   90 (275)
T 3mq0_A           33 VRILDLVAGSPRDLTAAELTRFLDL---PKSSAHGLLAVMTELDLLARSA----------DGTLRIGPHSL   90 (275)
T ss_dssp             HHHHHHHHHCSSCEEHHHHHHHHTC---C--CHHHHHHHHHHTTSEEECT----------TSEEEECTHHH
T ss_pred             HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC----------CCcEEehHHHH
Confidence            4567777765568999999999999   5789999999999999999985          47899998543

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=96.71  E-value=0.0014  Score=48.11  Aligned_cols=66  Identities=18%  Similarity=0.188  Sum_probs=50.2

Q ss_pred             HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127           29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA  106 (307)
Q Consensus        29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~  106 (307)
                      +.+|..-.++.|+..|..  ++.|+.|||+.+|+   +...+.+.|+.|...|++.....       +....|++++.
T Consensus        17 ~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~-------g~~~~y~l~~~   82 (102)
T 3pqk_A           17 LKTLSHPVRLMLVCTLVE--GEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRRN-------IKQIFYRLTEA   82 (102)
T ss_dssp             HHHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEECS-------SSCCEEEECSS
T ss_pred             HHHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-------CCEEEEEECcH
Confidence            344444556666777754  78999999999999   57899999999999999998762       12346887764

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=96.61  E-value=0.054  Score=48.51  Aligned_cols=103  Identities=14%  Similarity=0.203  Sum_probs=81.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHH-CCCCeEEEecchHHHHhchh----------------------------cCCCeEEEe
Q 037127          196 GLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDLPHVVNGLES----------------------------DLANLKYVG  246 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl~~~~~~a~~----------------------------~~~rv~~~~  246 (307)
                      +...||-+|||-=...-.+... .++++++=+|.|++++.=++                            ..++..+++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~  169 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG  169 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence            4678999999988888888765 36788999999988764111                            157899999


Q ss_pred             cCCCCC-----------CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          247 GDMFEA-----------IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       247 ~d~~~~-----------~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      .|+.+.           ++  ..-++++=-+|.+++.+++..+|+.+.+..++    |.+++.|++.++
T Consensus       170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~  234 (334)
T 3iei_A          170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMG  234 (334)
T ss_dssp             CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTT
T ss_pred             cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCC
Confidence            999861           12  25677888899999999999999999998875    788889998654

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=96.58  E-value=0.002  Score=46.77  Aligned_cols=66  Identities=12%  Similarity=0.223  Sum_probs=52.5

Q ss_pred             HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127           29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA  106 (307)
Q Consensus        29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~  106 (307)
                      ..+|....++.|+..|..  ++.|+.|||+.+|+   +...+.+.|+.|...|++.....       +....|++++.
T Consensus        17 ~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~-------g~~~~y~l~~~   82 (98)
T 3jth_A           17 LKAMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRKE-------AQTVYYTLKSE   82 (98)
T ss_dssp             HHHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC-------TTCCEEEECCH
T ss_pred             HHHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-------CCEEEEEECHH
Confidence            445555667778888875  79999999999999   67999999999999999998762       12345887764

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=96.53  E-value=0.0042  Score=48.09  Aligned_cols=95  Identities=17%  Similarity=0.209  Sum_probs=59.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHH-----HHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCce
Q 037127            9 DTELLEAQAHVWNHIFNFINSMSLK-----CAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFF   83 (307)
Q Consensus         9 ~~~~~~~~~~l~~~~~g~~~~~~L~-----~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l   83 (307)
                      ++++......+...+...+....-.     +..++.++..|... ++.|..+||+.+++   +...+.++++.|...|++
T Consensus         6 ~~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv   81 (142)
T 3ech_A            6 NPDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLV   81 (142)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCE
Confidence            4455555555555555443332222     24466677777765 68999999999999   678999999999999999


Q ss_pred             eeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           84 AQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        84 ~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.....    +.-.-.+.+|+.|+.+.
T Consensus        82 ~r~~~~~----DrR~~~~~LT~~G~~~~  105 (142)
T 3ech_A           82 RRERNPS----DQRSFQLFLTDEGLAIH  105 (142)
T ss_dssp             EC--------------CCEECHHHHHHH
T ss_pred             eeccCCC----CCCeeeeEECHHHHHHH
Confidence            9875210    00012478999888655

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=96.48  E-value=0.0011  Score=57.40  Aligned_cols=59  Identities=27%  Similarity=0.323  Sum_probs=49.1

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      +.|+++|...+++.|+.|||+++|+   +...+.|+|..|...||+++++.         .++|++++..-
T Consensus         9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~---------~~~Y~lG~~~~   67 (260)
T 3r4k_A            9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG---------ARSYRLGPQVL   67 (260)
T ss_dssp             HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS---------SSEEEECTTHH
T ss_pred             HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCcEEcCHHHH
Confidence            3467777754478999999999999   67999999999999999999852         48999997543

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=96.40  E-value=0.0022  Score=47.80  Aligned_cols=63  Identities=13%  Similarity=0.194  Sum_probs=48.6

Q ss_pred             HHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           34 CAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      ...++.|+..|..  ++.|+.+||+.+|+   +...+.+.|+.|...|++.....       +....|.+|+.+.
T Consensus        20 ~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~~-------gr~~~y~l~~~~~   82 (114)
T 2oqg_A           20 DETRWEILTELGR--ADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVKV-------GREIRYRALGAEL   82 (114)
T ss_dssp             CHHHHHHHHHHHH--SCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEECSHHH
T ss_pred             ChHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEec-------CCEEEEEechHHH
Confidence            3445566666743  78999999999999   67999999999999999998752       1123488888765

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=96.38  E-value=0.0015  Score=49.70  Aligned_cols=69  Identities=12%  Similarity=0.101  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           28 NSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        28 ~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      .+.+|....++.|+..|... ++.|+.|||+.+|+   +...+.+.|+.|...|++.....       +....|++++.+
T Consensus        35 ~~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~~-------gr~~~y~l~~~~  103 (122)
T 1u2w_A           35 ILKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE-------GKLALYSLGDEH  103 (122)
T ss_dssp             HHHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-----------CCEEEESCHH
T ss_pred             HHHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEE-------CCEEEEEECHHH
Confidence            34555555677888888743 78999999999999   68999999999999999998752       112358887643

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=96.30  E-value=0.0017  Score=48.55  Aligned_cols=71  Identities=20%  Similarity=0.285  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCcccccccCCCCCC--HHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCC
Q 037127           19 VWNHIFNFINSMSLKCAVELSIPDIINKHGKPTT--LNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNN   95 (307)
Q Consensus        19 l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t--~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~   95 (307)
                      +++.+.+.+...+|.         .|..  ++.+  +.||++.+ |+   ....+.+.|+.|...|++++...       
T Consensus        20 ~l~~l~~~wrl~IL~---------~L~~--g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~-------   78 (111)
T 3df8_A           20 VLHLLGKKYTMLIIS---------VLGN--GSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG-------   78 (111)
T ss_dssp             THHHHHSTTHHHHHH---------HHTS--SSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES-------
T ss_pred             HHHHHcCccHHHHHH---------HHhc--CCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec-------
Confidence            444444555444443         4443  6777  99999999 99   68999999999999999999751       


Q ss_pred             CCCCeeecChhcchhh
Q 037127           96 DEEQGYVLTNASKLLL  111 (307)
Q Consensus        96 ~~~~~y~~t~~s~~l~  111 (307)
                       -...|++|+.|+.+.
T Consensus        79 -r~~~y~LT~~G~~l~   93 (111)
T 3df8_A           79 -QITTYALTEKGMNVR   93 (111)
T ss_dssp             -SSEEEEECHHHHHHH
T ss_pred             -CcEEEEECccHHHHH
Confidence             135799999998665

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.29  E-value=0.0094  Score=53.90  Aligned_cols=55  Identities=9%  Similarity=0.115  Sum_probs=45.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE  251 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~  251 (307)
                      ...|||||.|.|.++..|+++...-+++++++ +..++..++  ..++++++.+|+++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~  116 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  116 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence            47899999999999999998754457999999 666666665  35789999999975

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=96.27  E-value=0.002  Score=46.58  Aligned_cols=67  Identities=12%  Similarity=0.154  Sum_probs=50.5

Q ss_pred             HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      ++..-.++.|+..|.. +++.|+.|||+.+|+   +...+.+.|+.|...|++.....       +....|.+++.+.
T Consensus        20 ~l~~~~~~~il~~l~~-~~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~~-------~r~~~y~l~~~~~   86 (99)
T 3cuo_A           20 AMSHPKRLLILCMLSG-SPGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQRD-------AQRILYSIKNEAV   86 (99)
T ss_dssp             HHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC-------SSCEEEEECCHHH
T ss_pred             HhCChHHHHHHHHHHh-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec-------CCEEEEEEChHHH
Confidence            3344456667777765 368999999999999   67899999999999999998752       1133578876543

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=96.27  E-value=0.0014  Score=49.65  Aligned_cols=68  Identities=10%  Similarity=0.207  Sum_probs=52.9

Q ss_pred             HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      +.+|..-.++.|+..|..  ++.|+.|||+.+|+   +...+.+.|+.|...|++.....       +....|++++.+.
T Consensus        12 ~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~~-------gr~~~y~l~~~~~   79 (118)
T 3f6o_A           12 FQALADPTRRAVLGRLSR--GPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHKQ-------GRVRTCAIEKEPF   79 (118)
T ss_dssp             HHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEECSHHH
T ss_pred             HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEec-------CCEEEEEECHHHH
Confidence            445555567777777764  79999999999999   67999999999999999988763       1134688887654

>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A

Probab=96.17  E-value=0.0019  Score=55.35  Aligned_cols=60  Identities=18%  Similarity=0.191  Sum_probs=48.5

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL  110 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l  110 (307)
                      .|++.|...+++.|+.|||+.+|+   +...+.|+|..|...||+++.+.         .++|++++....+
T Consensus        10 ~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~---------~~~Y~lg~~~~~l   69 (241)
T 2xrn_A           10 SIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP---------AGGFRLGPALGQL   69 (241)
T ss_dssp             HHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG---------GCEEEECSHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC---------CCeEEECHHHHHH
Confidence            355666554458999999999999   67999999999999999999752         4789999865444

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=96.15  E-value=0.0033  Score=54.40  Aligned_cols=58  Identities=14%  Similarity=0.298  Sum_probs=47.3

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      +.|++.|...+++.|+.|||+.+|+   +...+.|+|..|...||+++.+          +++|++++...
T Consensus        26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~----------~~~Y~lg~~~~   83 (260)
T 2o0y_A           26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA----------DGSYSLGPEML   83 (260)
T ss_dssp             HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT----------TSCEEECHHHH
T ss_pred             HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC----------CCeEEecHHHH
Confidence            3456666543368999999999999   6789999999999999999985          34899987643

>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2

Probab=96.09  E-value=0.0031  Score=54.23  Aligned_cols=57  Identities=19%  Similarity=0.361  Sum_probs=46.9

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      .|++.|...+++.|+.|||+.+|+   +...+.|+|+.|...|++++..          .++|++++...
T Consensus        12 ~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~----------~~~Y~lg~~~~   68 (249)
T 1mkm_A           12 EILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK----------DKRYVPGYKLI   68 (249)
T ss_dssp             HHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT----------TSCEEECTHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC----------CCcEEECHHHH
Confidence            455666554358999999999999   6799999999999999999873          58899987643

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=96.08  E-value=0.0022  Score=47.42  Aligned_cols=52  Identities=10%  Similarity=0.197  Sum_probs=42.1

Q ss_pred             HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +|..-.++.|+..|..  ++.|+.+||+.+|+   +...+.+.|+.|...|++....
T Consensus        22 ~l~~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~   73 (106)
T 1r1u_A           22 ALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKR   73 (106)
T ss_dssp             HTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence            3334445566666664  68999999999999   6799999999999999999875

>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}

Probab=96.08  E-value=0.004  Score=53.78  Aligned_cols=59  Identities=17%  Similarity=0.198  Sum_probs=48.9

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      .|++.|...+++.|+.|||+.+|+   +...+.|+|..|...|+++++           +++|++++....+.
T Consensus        18 ~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~-----------~~~Y~Lg~~~~~l~   76 (257)
T 2g7u_A           18 AVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGS-----------GGRWSLTPRVLSIG   76 (257)
T ss_dssp             HHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-----------TTEEEECGGGHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC-----------CCEEEEcHHHHHHH
Confidence            456666543468999999999999   678999999999999999987           38999998765444

>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}

Probab=96.07  E-value=0.016  Score=44.48  Aligned_cols=67  Identities=24%  Similarity=0.262  Sum_probs=51.7

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.+.++.|...|++++....    .+.-...|.+|+.|+.+.
T Consensus        33 ~~~iL~~l~~~-~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~~----~d~r~~~~~lT~~G~~~~   99 (142)
T 3bdd_A           33 RYSILQTLLKD-APLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRNP----DNQREVLVWPTEQAREAL   99 (142)
T ss_dssp             HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECS----SSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC----CCCCeeEEEECHHHHHHH
Confidence            44566667654 68999999999999   679999999999999999987521    001123589999999766

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.06  E-value=0.012  Score=51.41  Aligned_cols=97  Identities=14%  Similarity=0.126  Sum_probs=67.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEecc----hH-----------------------HHHhchh-----
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAF-----PNLECTDFDL----PH-----------------------VVNGLES-----  237 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~Dl----~~-----------------------~~~~a~~-----  237 (307)
                      ..+..||++|+..|..+..+++..     |+-+++++|.    |+                       ..+.+++     
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            446799999999999998887654     4678999984    11                       1222333     


Q ss_pred             -c-CCCeEEEecCCCCC---CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          238 -D-LANLKYVGGDMFEA---IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       238 -~-~~rv~~~~~d~~~~---~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                       . .++|+++.||+.+.   .+  .+|++++---.+    +.....|..+.+.|+|   || ++|+|-+
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~p---GG-iIv~DD~  245 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSV---GG-YVIVDDY  245 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEE---EE-EEEESSC
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCC---CE-EEEEcCC
Confidence             2 48999999999762   32  488888775221    2245789999999998   55 5555543

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=96.05  E-value=0.0058  Score=44.33  Aligned_cols=47  Identities=17%  Similarity=0.297  Sum_probs=43.4

Q ss_pred             CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           51 TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        51 ~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++..+||..+|+   +++.++..++.|...|++++..           +.|.+|+.|+.+.
T Consensus        21 ~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~~-----------~~~~LT~kG~~~l   67 (95)
T 1r7j_A           21 SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG-----------KQYMLTKKGEELL   67 (95)
T ss_dssp             BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-----------TEEEECHHHHHHH
T ss_pred             CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEC-----------CeeEEChhHHHHH
Confidence            899999999999   6899999999999999999984           6799999999655

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28

Probab=96.03  E-value=0.002  Score=46.62  Aligned_cols=73  Identities=12%  Similarity=0.125  Sum_probs=53.1

Q ss_pred             HHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127           30 MSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL  109 (307)
Q Consensus        30 ~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~  109 (307)
                      .++....++.|+..|... ++.|+.+||+.+|+   +...+.+.|+.|...|++......    +++....|.+|+.+..
T Consensus        11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~----~~~r~~~~~lt~~g~~   82 (100)
T 1ub9_A           11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVI----ADRPRTVVEITDFGME   82 (100)
T ss_dssp             HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEEC----SSSCEEEEEECHHHHH
T ss_pred             cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecC----CCcceEEEEECHHHHH
Confidence            344555566667666533 68999999999999   679999999999999999965410    0111246899998864


Q ss_pred             h
Q 037127          110 L  110 (307)
Q Consensus       110 l  110 (307)
                      .
T Consensus        83 ~   83 (100)
T 1ub9_A           83 E   83 (100)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=96.02  E-value=0.0043  Score=43.62  Aligned_cols=62  Identities=19%  Similarity=0.267  Sum_probs=44.5

Q ss_pred             hCCcccccccC--CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127           37 ELSIPDIINKH--GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL  109 (307)
Q Consensus        37 ~lglfd~L~~~--~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~  109 (307)
                      +..|++.|...  |.++|+.+||+++|+   +...+.+.|..|...|++...+.        ..+.|.+.+....
T Consensus        12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~--------~~~~W~i~~~~~~   75 (81)
T 1qbj_A           12 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG--------TPPLWKIAVSTQA   75 (81)
T ss_dssp             HHHHHHHHHHHCTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESS--------SSCEEEEC-----
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC--------CCCeeEEeCcHHh
Confidence            33455555543  137999999999999   67899999999999999998752        2478888776543

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=96.02  E-value=0.0031  Score=43.91  Aligned_cols=58  Identities=21%  Similarity=0.269  Sum_probs=45.1

Q ss_pred             hCCcccccccCC--CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127           37 ELSIPDIINKHG--KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN  105 (307)
Q Consensus        37 ~lglfd~L~~~~--~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~  105 (307)
                      +..|++.|...+  .++|+.|||+++|+   +...+.+.|..|...|++...+.        ..+.|..++
T Consensus        16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~--------~~~~W~i~~   75 (77)
T 1qgp_A           16 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG--------TPPLWKIAV   75 (77)
T ss_dssp             HHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECS--------SSCEEEECC
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC--------CCCceEecC
Confidence            445666666531  37999999999999   67899999999999999998752        246777664

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=96.01  E-value=0.0027  Score=50.33  Aligned_cols=69  Identities=12%  Similarity=0.176  Sum_probs=56.1

Q ss_pred             HHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           28 NSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        28 ~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      .+++|..-.++.|+..|..  ++.|+.|||+.+|+   +...+.+.|+.|...|+++....       +....|++++.+
T Consensus        51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~~-------Gr~~~y~lt~~~  118 (151)
T 3f6v_A           51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRKD-------GRFRYYRLDPQG  118 (151)
T ss_dssp             HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEECHHH
T ss_pred             HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec-------CCEEEEEEChHH
Confidence            3566666778888888875  79999999999999   67999999999999999998762       112368898876


Q ss_pred             c
Q 037127          108 K  108 (307)
Q Consensus       108 ~  108 (307)
                      .
T Consensus       119 ~  119 (151)
T 3f6v_A          119 L  119 (151)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=95.95  E-value=0.0015  Score=48.58  Aligned_cols=61  Identities=13%  Similarity=0.218  Sum_probs=45.9

Q ss_pred             HHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           35 AVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        35 a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      -.++.|+..|..  ++.|+.|||+.+|+   +...+.+.|+.|...|++.....       +....|++++.+
T Consensus        25 ~~r~~IL~~L~~--~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~-------gr~~~y~l~~~~   85 (108)
T 2kko_A           25 GRRLQILDLLAQ--GERAVEAIATATGM---NLTTASANLQALKSGGLVEARRE-------GTRQYYRIAGED   85 (108)
T ss_dssp             STTHHHHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEEE-------TTEEEEEESCHH
T ss_pred             HHHHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-------CCEEEEEEChHH
Confidence            334555666654  68999999999999   67999999999999999998752       112357777543

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.94  E-value=0.049  Score=51.97  Aligned_cols=115  Identities=9%  Similarity=0.044  Sum_probs=72.0

Q ss_pred             hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-------------CCCeEEEecc-hHHHHhchh-----cCCCe
Q 037127          182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-------------PNLECTDFDL-PHVVNGLES-----DLANL  242 (307)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------------p~~~~~~~Dl-~~~~~~a~~-----~~~rv  242 (307)
                      +++.+++.+.  .....+|+|-.||+|.++....+..             ...++.|+|+ +.+...|+.     ..+.-
T Consensus       205 Vv~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~  282 (530)
T 3ufb_A          205 VVRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYP  282 (530)
T ss_dssp             HHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccc
Confidence            3444444444  3445689999999999998775432             1346899999 666666653     34445


Q ss_pred             EEEecCCCC-CC------CCccEEEechhhc---------cCC-----hhHHHHHHHHHHHhccCC----CCCcEEEEEe
Q 037127          243 KYVGGDMFE-AI------PPADAVVLKWILH---------DWN-----DEECVKILKKCKEAITSN----SKIGKVIIID  297 (307)
Q Consensus       243 ~~~~~d~~~-~~------p~~D~i~~~~vLh---------~~~-----~~~~~~~L~~~~~~L~p~----~~gg~lli~e  297 (307)
                      .+..+|.+. +.      ..||+|+..=..-         .++     .+....+++.+.+.|++.    ++||++.|+=
T Consensus       283 ~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl  362 (530)
T 3ufb_A          283 RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV  362 (530)
T ss_dssp             EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred             cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence            677888875 21      1489888754331         111     112346788888888721    0289888775


Q ss_pred             e
Q 037127          298 M  298 (307)
Q Consensus       298 ~  298 (307)
                      +
T Consensus       363 P  363 (530)
T 3ufb_A          363 P  363 (530)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=95.94  E-value=0.0033  Score=43.74  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=34.3

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |+|.|+.|||+.+|+   .+..+++-|..|...|++.+..
T Consensus        22 g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~   58 (77)
T 2jt1_A           22 GAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN   58 (77)
T ss_dssp             TSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred             CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence            589999999999999   5688999999999999999985

>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*

Probab=95.92  E-value=0.0049  Score=47.84  Aligned_cols=50  Identities=20%  Similarity=0.321  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.|+.+||+.+++   +...+.+.++.|...|++.+.+          .+.|.+|+.|+.+.
T Consensus        21 ~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~----------~~~~~LT~~g~~~~   70 (142)
T 1on2_A           21 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK----------YRGLVLTSKGKKIG   70 (142)
T ss_dssp             SSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET----------TTEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee----------CceEEEchhHHHHH
Confidence            68999999999999   6799999999999999999985          47899999988654

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=95.91  E-value=0.0035  Score=46.42  Aligned_cols=56  Identities=16%  Similarity=0.213  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           49 KPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++.|||+.+ |+   +...+.+.|+.|...|++++....    .+.-.-.|.+|+.|+.+.
T Consensus        26 ~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~----~d~r~~~y~LT~~G~~l~   82 (107)
T 2hzt_A           26 GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYN----QVPPKVEYELSEYGRSLE   82 (107)
T ss_dssp             CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEEC----SSSCEEEEEECTTGGGGH
T ss_pred             CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecC----CCCCeEEEEECccHHHHH
Confidence            789999999999 99   689999999999999999987531    001113599999987654

>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}

Probab=95.84  E-value=0.0042  Score=53.88  Aligned_cols=57  Identities=19%  Similarity=0.327  Sum_probs=47.2

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      +.|++.|...+++.|+.|||+.+|+   +...+.|+|..|...||++++           +++|++++...
T Consensus        24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~-----------~~~Y~Lg~~~~   80 (265)
T 2ia2_A           24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATD-----------GSAFWLTPRVL   80 (265)
T ss_dssp             HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEES-----------SSEEEECGGGG
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEec-----------CCEEEEcHHHH
Confidence            3456666543468999999999999   679999999999999999986           38999987643

>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}

Probab=95.84  E-value=0.0083  Score=46.82  Aligned_cols=66  Identities=9%  Similarity=0.116  Sum_probs=48.2

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      ++.++..|...++++|..+||+.+++   +...+.++++.|...|++++...       ..++   .+.+|+.|+.+..
T Consensus        41 q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~-------~~D~R~~~~~LT~~G~~~~~  109 (150)
T 3fm5_A           41 SYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLD-------PSDRRNKLIAATEEGRRLRD  109 (150)
T ss_dssp             HHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC------------------CEECHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCC-------ccccchheeeECHHHHHHHH
Confidence            45556666544467899999999999   67999999999999999998752       1122   3889999986653

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=95.81  E-value=0.0046  Score=43.40  Aligned_cols=60  Identities=17%  Similarity=0.180  Sum_probs=47.0

Q ss_pred             HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      ....|++.|... + .|+.|||+.+|+   +...+++.|..|...|++....        ++...|.++....
T Consensus        18 ~~~~IL~lL~~~-g-~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~--------~~PP~W~~~~~~~   77 (82)
T 1oyi_A           18 IVCEAIKTIGIE-G-ATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSD--------DIPPRWFMTTEAD   77 (82)
T ss_dssp             HHHHHHHHHSSS-T-EEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECS--------SSSCEEESCC---
T ss_pred             HHHHHHHHHHHc-C-CCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC--------CCCCcceeccCcc
Confidence            345566777763 4 999999999999   6799999999999999999985        3467888886543

>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}

Probab=95.81  E-value=0.01  Score=45.40  Aligned_cols=49  Identities=20%  Similarity=0.350  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      +++.|..+||+.+|+   +...++++|..|...|+++...        +..|.|.++...
T Consensus        24 ~~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~--------g~~ggy~L~~~~   72 (129)
T 2y75_A           24 EGPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIR--------GAYGGYVLGSEP   72 (129)
T ss_dssp             SCCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC------------CCEEESSCG
T ss_pred             CCcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecC--------CCCCceEeCCCH
Confidence            378999999999999   6899999999999999998764        114678887543

>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69

Probab=95.78  E-value=0.0049  Score=47.54  Aligned_cols=78  Identities=14%  Similarity=0.210  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCC
Q 037127           16 QAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNN   94 (307)
Q Consensus        16 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~   94 (307)
                      ...+++++.+.+...+|..         |..  ++.++.||++.+ |+   +...+.+.|+.|...|++++....    .
T Consensus        25 ~~~~l~~l~~~w~l~IL~~---------L~~--g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~----~   86 (131)
T 1yyv_A           25 SREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYP----V   86 (131)
T ss_dssp             HHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEEC----S
T ss_pred             HHHHHHHHcCCcHHHHHHH---------HHc--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecC----C
Confidence            3445555555555544433         333  789999999999 79   689999999999999999987521    0


Q ss_pred             CCCCCeeecChhcchhh
Q 037127           95 NDEEQGYVLTNASKLLL  111 (307)
Q Consensus        95 ~~~~~~y~~t~~s~~l~  111 (307)
                      +.-.-.|++|+.|+.+.
T Consensus        87 d~r~~~y~LT~~G~~l~  103 (131)
T 1yyv_A           87 VPPHVEYSLTPLGEQVS  103 (131)
T ss_dssp             SSCEEEEEECHHHHHHH
T ss_pred             CCCeEEEEECccHHHHH
Confidence            00112699999998665

>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}

Probab=95.75  E-value=0.004  Score=53.38  Aligned_cols=61  Identities=13%  Similarity=0.227  Sum_probs=50.2

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +.++..|... ++.|+.|||+.+|+   +...+.|.|+.|...|++++.+.         ...|.+|+.++.+.
T Consensus       155 ~~IL~~L~~~-~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r---------~~~~~LT~~G~~l~  215 (244)
T 2wte_A          155 MKLLNVLYET-KGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK---------DRKVELNELGLNVI  215 (244)
T ss_dssp             HHHHHHHHHH-TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT---------TTEEEECHHHHHHH
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC---------ccEEEECHHHHHHH
Confidence            3445555443 68999999999999   68999999999999999999742         47899999998665

>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71

Probab=95.74  E-value=0.015  Score=42.23  Aligned_cols=55  Identities=16%  Similarity=0.190  Sum_probs=46.0

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      |++.+..+||+.+++   +...|.|.|..|...|+++....      .++.+..++|+.|+.+.
T Consensus        34 g~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~------~D~R~~v~LT~~G~~~l   88 (96)
T 2obp_A           34 ATPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVE------ADGRGHASLTQEGAALA   88 (96)
T ss_dssp             CCCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC------TTSCEEEEECHHHHHHH
T ss_pred             CCCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecC------CCCceeEEECHHHHHHH
Confidence            378999999999999   78999999999999999998652      23345689999998554

>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}

Probab=95.74  E-value=0.019  Score=44.82  Aligned_cols=67  Identities=19%  Similarity=0.252  Sum_probs=50.0

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee--eccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQ--QTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~--~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++  ....    .+.-.-.+.+|+.|+.+.
T Consensus        43 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~~----~d~R~~~~~LT~~G~~~~  111 (154)
T 2qww_A           43 QLAMINVIYST-PGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTIP----NDSMDLTLKLSKKGEDLS  111 (154)
T ss_dssp             HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC--C----TTCTTCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCCC----CCCceeEeEECHHHHHHH
Confidence            45566667654 68999999999999   67999999999999999998  4310    001112589999998655

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.69  E-value=0.022  Score=50.15  Aligned_cols=41  Identities=20%  Similarity=0.097  Sum_probs=35.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES  237 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~  237 (307)
                      .....|||++||+|..+.++++.  +-+++++|+ +.+++.+++
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~  275 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE  275 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence            35678999999999999999886  568999999 788887765

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=95.67  E-value=0.0061  Score=42.73  Aligned_cols=48  Identities=21%  Similarity=0.404  Sum_probs=40.3

Q ss_pred             hCCcccccccCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           37 ELSIPDIINKHG-KPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        37 ~lglfd~L~~~~-~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +..|++.|...+ ++.|++||++.+     ++   +...+.|.|+.|...|++.+..
T Consensus        19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~   72 (83)
T 2fu4_A           19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN   72 (83)
T ss_dssp             HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence            344677776543 689999999999     88   6799999999999999999875

>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}

Probab=95.67  E-value=0.025  Score=44.68  Aligned_cols=65  Identities=11%  Similarity=0.143  Sum_probs=51.7

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      ++.++..|... +++|..+||+.+++   +...+.++++.|...|++++...       ..++   .+.+|+.|+.+..
T Consensus        48 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~-------~~DrR~~~l~LT~~G~~~~~  115 (162)
T 3k0l_A           48 QFTALSVLAAK-PNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPD-------PTHGRRILVTVTPSGLDKLN  115 (162)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEEC-------CSSSCCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCC-------CCcCCeeEeEECHhHHHHHH
Confidence            44566677665 68999999999999   67999999999999999998862       1122   4899999986653

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=95.66  E-value=0.015  Score=44.92  Aligned_cols=66  Identities=9%  Similarity=0.093  Sum_probs=50.2

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|. . ++.|..+||+.+++   +...+.+.++.|...|++++....    .+.-...+.+|+.|+.+.
T Consensus        39 ~~~iL~~l~-~-~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~----~d~r~~~~~lT~~G~~~~  104 (146)
T 2gxg_A           39 DFLVLRATS-D-GPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDR----EDRRKILIEITEKGLETF  104 (146)
T ss_dssp             HHHHHHHHT-T-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECS----SCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHh-c-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCC----CCCceEEEEECHHHHHHH
Confidence            455566676 3 79999999999999   679999999999999999987521    001112488999888655

>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48

Probab=95.55  E-value=0.006  Score=44.23  Aligned_cols=62  Identities=21%  Similarity=0.330  Sum_probs=48.5

Q ss_pred             cccccccCCCCCCHHHH----HHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           40 IPDIINKHGKPTTLNDL----VSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eL----A~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      ++..|... ++.|..+|    |+.+++   +...+.++++.|...|++++....       ....|.+|+.|+.+..
T Consensus        13 iL~~l~~~-~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~-------r~~~~~LT~~G~~~~~   78 (99)
T 1tbx_A           13 VLAYLYDN-EGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER-------GEKRLYLTEKGKLFAI   78 (99)
T ss_dssp             HHHHHTTC-TTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET-------TEEEEEECHHHHHHHH
T ss_pred             HHHHHHHc-CCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC-------CceEEEECHHHHHHHH
Confidence            44445443 68999999    999999   679999999999999999987521       1346899999986653

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=95.53  E-value=0.0069  Score=46.06  Aligned_cols=52  Identities=15%  Similarity=0.234  Sum_probs=43.2

Q ss_pred             HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +|..-.++.|+..|..  ++.++.+||+.+|+   +...+.+.|+.|...|++....
T Consensus        42 aL~~~~rl~IL~~L~~--~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~   93 (122)
T 1r1t_A           42 VLADPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRK   93 (122)
T ss_dssp             HHCCHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence            3444456667777764  68999999999999   6799999999999999999875

>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A

Probab=95.53  E-value=0.012  Score=45.32  Aligned_cols=57  Identities=18%  Similarity=0.217  Sum_probs=45.9

Q ss_pred             CCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           49 KPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        49 ~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      |+.++.||++.+ |+   +...|.+.|+.|...|++++.....    +.-.-.|++|+.|+.+..
T Consensus        38 g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~~~----d~r~v~y~LT~~G~~l~~   95 (131)
T 4a5n_A           38 GKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVYHQ----VPPKVEYSLTEFGRTLEP   95 (131)
T ss_dssp             SCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECS----SSCEEEEEECTTGGGGHH
T ss_pred             CCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEecCC----CCCeEEEEECHhHHHHHH
Confidence            799999999999 99   6799999999999999999885310    001136999999997763

>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28

Probab=95.51  E-value=0.026  Score=44.00  Aligned_cols=66  Identities=14%  Similarity=0.223  Sum_probs=49.5

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +.++..|... ++.|..+||+.+++   +...+.+.++.|...|++++.....    +.-.-.+.+|+.|+.+.
T Consensus        40 ~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~----d~R~~~~~lT~~G~~~~  105 (155)
T 1s3j_A           40 LFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTK----DRRVIDLSLTDEGDIKF  105 (155)
T ss_dssp             HHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS----CTTSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCC----CCceEEEEECHHHHHHH
Confidence            3356666653 68999999999999   6799999999999999999875210    00112588999888654

>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}

Probab=95.49  E-value=0.017  Score=46.05  Aligned_cols=47  Identities=19%  Similarity=0.363  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA  106 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~  106 (307)
                      ++.|.++||+..++   ++..++++|..|...|++....        |..|.|.++..
T Consensus        43 ~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~r--------G~~GGy~Lar~   89 (159)
T 3lwf_A           43 GPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIR--------GAHGGYVLNGD   89 (159)
T ss_dssp             CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC--------STTCEEEECSC
T ss_pred             CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEec--------CCCCceEecCC
Confidence            68999999999999   6899999999999999999875        23577888754

>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A

Probab=95.40  E-value=0.038  Score=42.95  Aligned_cols=67  Identities=10%  Similarity=0.193  Sum_probs=47.5

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec-cCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT-LNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~-~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..| .. ++.|..+||+.+++   +...+.++++.|...|++++.. ++.   .+.-.-.+.+|+.|+.+.
T Consensus        40 q~~iL~~l-~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~~---~D~R~~~~~lT~~G~~~~  107 (151)
T 3kp7_A           40 QSHVLNML-SI-EALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKLEKPDSN---TDQRLKIIKLSNKGKKYI  107 (151)
T ss_dssp             HHHHHHHH-HH-SCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC--------------CCBEECHHHHHHH
T ss_pred             HHHHHHHH-Hc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCC---CCCCeeEEEECHhHHHHH
Confidence            44467777 43 79999999999999   6789999999999999999731 000   000112478888888665

>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}

Probab=95.37  E-value=0.021  Score=45.51  Aligned_cols=68  Identities=16%  Similarity=0.257  Sum_probs=51.2

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      ++.++..|... +++|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.+.+|+.|+.+..
T Consensus        47 ~~~iL~~L~~~-~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~----~DrR~~~~~LT~~G~~~~~  114 (168)
T 2nyx_A           47 QFRTLVILSNH-GPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHP----TSRRELLAALTKRGRDVVR  114 (168)
T ss_dssp             HHHHHHHHHHH-CSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECS----SCSSCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCC----CCCCeeEEEECHHHHHHHH
Confidence            45566677654 68999999999999   679999999999999999987521    0011124889999986553

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=95.35  E-value=0.011  Score=41.26  Aligned_cols=44  Identities=9%  Similarity=0.140  Sum_probs=38.7

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |.+.|... +.+++.|||+.+++   ++..++|-|+.|...|++.+.+
T Consensus         7 Il~~L~~~-g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~~   50 (78)
T 1xn7_A            7 VRDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ   50 (78)
T ss_dssp             HHHHHHHS-CSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEEC
T ss_pred             HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence            45666665 79999999999999   6899999999999999999983

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=95.29  E-value=0.018  Score=40.11  Aligned_cols=44  Identities=16%  Similarity=0.319  Sum_probs=37.1

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |++.|... ++.|..|||+.+|+   +...+++.|..|...|++....
T Consensus         5 Il~~L~~~-~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~~   48 (81)
T 2htj_A            5 ILEFLNRH-NGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRSP   48 (81)
T ss_dssp             HHHHHHHS-CCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEEC
T ss_pred             HHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence            45555543 68999999999999   6799999999999999999653

>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69

Probab=95.26  E-value=0.016  Score=45.51  Aligned_cols=55  Identities=18%  Similarity=0.315  Sum_probs=45.4

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++.||++.+|+   +...+.+.|+.|...|++++....    .+. .-.|.+|+.|+.+.
T Consensus        36 g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~----~d~-~~~y~LT~~G~~l~   90 (146)
T 2f2e_A           36 GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAE----SGS-HQEYRLTDKGRALF   90 (146)
T ss_dssp             TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECS----SSS-CEEEEECHHHHTTH
T ss_pred             CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecC----CCC-eEEEEECchHHHHH
Confidence            68999999999999   679999999999999999988621    112 34799999987654

>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69

Probab=95.16  E-value=0.013  Score=43.68  Aligned_cols=56  Identities=21%  Similarity=0.297  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           49 KPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++.+||+.+ ++   +...+.+.|+.|...|++++....    .+.-.-.|.+|+.|+.+.
T Consensus        34 ~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~~----~d~r~~~~~LT~~G~~~~   90 (112)
T 1z7u_A           34 GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFN----ELPPRVEYTLTPEGYALY   90 (112)
T ss_dssp             SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEEC----CSSCEEEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeecC----CCCCeEEEEECHhHHHHH
Confidence            689999999999 99   689999999999999999987621    001112599999988654

>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55

Probab=95.16  E-value=0.016  Score=45.56  Aligned_cols=48  Identities=15%  Similarity=0.198  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      ++.|..+||+.+++   ++..++++|..|...|+++...        | .|.|.++....
T Consensus        29 ~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~r--------G-~GGy~L~~~p~   76 (149)
T 1ylf_A           29 SLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNR--------G-PGGAGLLKDLH   76 (149)
T ss_dssp             GGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC------------CCEEESSCGG
T ss_pred             CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEcc--------C-CCceEeCCChh
Confidence            68999999999999   6899999999999999999775        2 57888876543

>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A

Probab=95.15  E-value=0.022  Score=44.56  Aligned_cols=49  Identities=14%  Similarity=0.234  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      ++.|.++||+.+++   ++..++++|..|...|++....        |..|.|.++....
T Consensus        27 ~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~r--------G~~GGy~Lar~p~   75 (143)
T 3t8r_A           27 GCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVR--------GAKGGYQLRVPAE   75 (143)
T ss_dssp             CCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECS--------SSSSEEEESSCGG
T ss_pred             CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecC--------CCCCCeeecCCcc
Confidence            68999999999999   6899999999999999998765        2247898875443

>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0

Probab=95.14  E-value=0.029  Score=44.84  Aligned_cols=49  Identities=16%  Similarity=0.352  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      +++|.++||+.+++   ++..+++++..|...||++...        +-.|.|.+.....
T Consensus        27 ~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~r--------G~~GGy~Lar~p~   75 (162)
T 3k69_A           27 SKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTV--------GKNGGYQLDLALA   75 (162)
T ss_dssp             SCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEEC--------STTCEEECCSCGG
T ss_pred             CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec--------CCCCCeEecCChh
Confidence            68999999999999   6899999999999999998775        2256799886544

>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A

Probab=95.11  E-value=0.016  Score=41.73  Aligned_cols=49  Identities=10%  Similarity=0.120  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      ++|..+||+.+++   +...+.++++.|...|++....          ++   .|.+|+.|+.+.
T Consensus        30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~----------d~R~~~v~LT~~G~~~~   81 (95)
T 2qvo_A           30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECEL----------EGRTKIIRLTDKGQKIA   81 (95)
T ss_dssp             CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEE----------ETTEEEEEECHHHHHHH
T ss_pred             CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCC----------CCCeEEEEEChhHHHHH
Confidence            4999999999999   6799999999999999994332          23   599999998665

>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}

Probab=95.10  E-value=0.0071  Score=46.75  Aligned_cols=68  Identities=13%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.+.+|+.|+.+..
T Consensus        39 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~----~D~R~~~~~LT~~G~~~~~  106 (143)
T 3oop_A           39 QWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREIST----EDRRISLLSLTDKGRKETT  106 (143)
T ss_dssp             HHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC--------CCSCEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCCC----ccCceeeeeECHHHHHHHH
Confidence            44456666654 78999999999999   679999999999999999987521    0011235889999986653

>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}

Probab=95.07  E-value=0.022  Score=44.75  Aligned_cols=68  Identities=16%  Similarity=0.217  Sum_probs=49.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|...+++.|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.+.+|+.|+.+.
T Consensus        49 ~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~----~d~R~~~~~lT~~G~~~~  116 (160)
T 3boq_A           49 KFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSA----DDRRSFSAKLTDAGLTTF  116 (160)
T ss_dssp             HHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC------------CEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCC----CCCCeEEEEEChhHHHHH
Confidence            45567777322378999999999999   678999999999999999987421    000112488999988655

>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}

Probab=95.06  E-value=0.012  Score=45.01  Aligned_cols=67  Identities=9%  Similarity=0.203  Sum_probs=50.0

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.+.++.|...|++++.....    +.-.-.|.+|+.|+.+.
T Consensus        35 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~----d~r~~~~~lT~~G~~~~  101 (139)
T 3bja_A           35 QFGVIQVLAKS-GKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNPN----DQRETLVYLTKKGEETK  101 (139)
T ss_dssp             HHHHHHHHHHS-CSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECSS----CTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCCC----CCceeEEEECHHHHHHH
Confidence            44456666654 68999999999999   5789999999999999999874210    01112488999988665

>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=95.05  E-value=0.0078  Score=46.13  Aligned_cols=67  Identities=12%  Similarity=0.114  Sum_probs=50.3

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.+.++.|...|++++.....    +.-.-.|.+|+.|+.+.
T Consensus        40 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~----d~R~~~~~lT~~G~~~~  106 (140)
T 2nnn_A           40 QWAALVRLGET-GPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADPD----DGRRLLVSLSPAGRAEL  106 (140)
T ss_dssp             HHHHHHHHHHH-SSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEETT----EEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCC----CCCeeeeEECHhHHHHH
Confidence            45566677654 68999999999999   6799999999999999999864210    00012488999988655

>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*

Probab=95.04  E-value=0.015  Score=45.71  Aligned_cols=63  Identities=19%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      ++-.|...+++.+..+||+.+++   +...+.++++.|...|++++...       ..++   .+.+|+.|+.+..
T Consensus        36 vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~-------~~DrR~~~l~LT~~G~~~~~  101 (151)
T 4aik_A           36 TLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTS-------ANDRRAKRIKLTEQSSPIIE  101 (151)
T ss_dssp             HHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEC-------SSCTTCEEEEECGGGHHHHH
T ss_pred             HHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecC-------CCCCcchhhhcCHHHHHHHH
Confidence            34445443456888999999999   68999999999999999998763       1233   4889999986653

>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28

Probab=95.03  E-value=0.014  Score=44.81  Aligned_cols=68  Identities=16%  Similarity=0.241  Sum_probs=49.4

Q ss_pred             hCCcccccccCCC-CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGK-PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~-~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|...++ +.|..+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+.
T Consensus        36 ~~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~----d~R~~~i~lT~~G~~~~  104 (141)
T 3bro_A           36 QMTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGK----DSRQKCLKLTKKANKLE  104 (141)
T ss_dssp             HHHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSS----CTTSEEEEECHHHHTTH
T ss_pred             HHHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCCc----CCCeeeeEECHHHHHHH
Confidence            3344556655422 8999999999999   6799999999999999999875210    00112588899887654

>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0

Probab=95.03  E-value=0.0093  Score=45.75  Aligned_cols=69  Identities=19%  Similarity=0.153  Sum_probs=50.5

Q ss_pred             hCCcccccccCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           37 ELSIPDIINKHG-KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~-~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      ++.++..|...+ ++.|..+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+..
T Consensus        33 ~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~----D~R~~~~~LT~~G~~~~~  102 (139)
T 3eco_A           33 QGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVDAQ----DTRRKNIGLTTSGIKLVE  102 (139)
T ss_dssp             HHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC------CCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCCC----CCCeeeeEECHHHHHHHH
Confidence            344555555542 48999999999999   6799999999999999999875210    001124789999986653

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=95.01  E-value=0.01  Score=42.19  Aligned_cols=44  Identities=9%  Similarity=0.142  Sum_probs=38.7

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |.+.|... +.+++.|||+.+++   ++..++|.|+.|...|++.+..
T Consensus         7 Il~~L~~~-g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~   50 (87)
T 2k02_A            7 VRDMLALQ-GRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS   50 (87)
T ss_dssp             HHHHHHHS-CSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence            45566665 79999999999999   6899999999999999999984

>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A

Probab=95.00  E-value=0.031  Score=42.98  Aligned_cols=67  Identities=10%  Similarity=0.167  Sum_probs=50.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+.
T Consensus        38 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~----D~R~~~~~LT~~G~~~~  104 (140)
T 3hsr_A           38 GYIVLMAIEND-EKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREEK----DERNLQISLTEQGKAIK  104 (140)
T ss_dssp             HHHHHHHSCTT-CEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-----------CEEEECHHHHHTH
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCCC----CcceeeeeEChHHHHHH
Confidence            44456666654 79999999999999   6799999999999999999885210    00112589999998665

>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}

Probab=95.00  E-value=0.028  Score=43.25  Aligned_cols=50  Identities=20%  Similarity=0.358  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +++.|+.+||+.+++   +...+.+.++.|...|++.+..           +.|.+|+.++.+.
T Consensus        29 ~~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~~-----------~~~~Lt~~g~~~~   78 (139)
T 2x4h_A           29 GEGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKKE-----------DGVWITNNGTRSI   78 (139)
T ss_dssp             TSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-----------TEEEECHHHHHHH
T ss_pred             CCCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEecC-----------CeEEEChhHHHHH
Confidence            378999999999999   6799999999999999999873           6799999887554

>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}

Probab=94.97  E-value=0.0093  Score=46.30  Aligned_cols=67  Identities=13%  Similarity=0.209  Sum_probs=48.7

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++.....    +.-...+.+|+.|+.+.
T Consensus        42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~----D~R~~~~~lT~~G~~~~  108 (148)
T 3nrv_A           42 EWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGHSE----DKRTYAINLTEMGQELY  108 (148)
T ss_dssp             HHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC-------------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCC----CcceeEeEECHhHHHHH
Confidence            45566666654 69999999999999   6799999999999999999874210    01123588999888655

>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69

Probab=94.97  E-value=0.014  Score=43.13  Aligned_cols=79  Identities=14%  Similarity=0.171  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCC
Q 037127           15 AQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRN   93 (307)
Q Consensus        15 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~   93 (307)
                      +...+++.+.+.+...+|.         .|..  ++.++.|||+.+ |+   +...+.+.|+.|...|++++.....   
T Consensus        14 ~~~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~~---   76 (107)
T 2fsw_A           14 PVRKSMQIFAGKWTLLIIF---------QINR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPE---   76 (107)
T ss_dssp             HHHHHHHHHTSSSHHHHHH---------HHTT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECS---
T ss_pred             CHHHHHHHHcCccHHHHHH---------HHHh--CCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecCC---
Confidence            3445555555555544443         3332  689999999999 49   6899999999999999999875310   


Q ss_pred             CCCCCCeeecChhcchhh
Q 037127           94 NNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        94 ~~~~~~~y~~t~~s~~l~  111 (307)
                       +.-.-.|.+|+.|+.+.
T Consensus        77 -d~r~~~y~LT~~G~~l~   93 (107)
T 2fsw_A           77 -VPPRVEYSLTPLGEKVL   93 (107)
T ss_dssp             -SSCEEEEEECHHHHTTH
T ss_pred             -CCCeeEEEECccHHHHH
Confidence             00113599999987654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.95  E-value=0.26  Score=48.49  Aligned_cols=104  Identities=12%  Similarity=0.085  Sum_probs=79.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC--------CCeEEEecchHHHHhchh-----------cC-----------------
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFP--------NLECTDFDLPHVVNGLES-----------DL-----------------  239 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p--------~~~~~~~Dl~~~~~~a~~-----------~~-----------------  239 (307)
                      +...||-+|||-=.....|...+|        +++++=+|.|++++.=++           ..                 
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~  186 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT  186 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence            457899999999988888887765        677888888988754222           11                 


Q ss_pred             -CCeEEEecCCCCC-------------CCC-ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127          240 -ANLKYVGGDMFEA-------------IPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       240 -~rv~~~~~d~~~~-------------~p~-~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~  304 (307)
                       ++..+++.|+.+.             .+. .-++++=-+|.+++.+++..+|+.+.+ + +   ++.+++.|.+.+...
T Consensus       187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~  261 (695)
T 2zwa_A          187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP  261 (695)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred             CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence             4899999999872             122 456677778999999999999999985 4 4   588999999877543

>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28

Probab=94.92  E-value=0.0099  Score=47.50  Aligned_cols=69  Identities=19%  Similarity=0.215  Sum_probs=49.8

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      ++.++..|...++++|..+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+..
T Consensus        55 q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~~----DrR~~~l~LT~~G~~~~~  123 (166)
T 3deu_A           55 HWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCAS----DRRAKRIKLTEKAEPLIA  123 (166)
T ss_dssp             HHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC------------CEEEECGGGHHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCCC----CCCeeEEEECHHHHHHHH
Confidence            44556666543368999999999999   6899999999999999999875210    001135889999886653

>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}

Probab=94.90  E-value=0.021  Score=44.99  Aligned_cols=67  Identities=15%  Similarity=0.255  Sum_probs=48.5

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++....    .+.-...|.+|+.|+.+.
T Consensus        51 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~----~d~R~~~~~lT~~G~~~~  117 (162)
T 2fa5_A           51 EWRVITILALY-PGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHG----DDRRRSMLALSPAGRQVY  117 (162)
T ss_dssp             HHHHHHHHHHS-TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC-------------CCCEECHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCC----CCCCeeEEEECHHHHHHH
Confidence            44566677654 68999999999999   679999999999999999986411    001113588898888655

>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*

Probab=94.87  E-value=0.01  Score=45.39  Aligned_cols=64  Identities=16%  Similarity=0.238  Sum_probs=49.2

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++...       ..++   .|.+|+.|+.+.
T Consensus        31 ~~~iL~~l~~~-~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~~-------~~d~R~~~~~lT~~G~~~~   97 (138)
T 3bpv_A           31 QVACLLRIHRE-PGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQD-------PENRRRYILEVTRRGEEII   97 (138)
T ss_dssp             HHHHHHHHHHS-TTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEEEEECHHHHHTH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecC-------CCCceeEEeeECHhHHHHH
Confidence            33455566554 78999999999999   67999999999999999998642       1122   388898888654

>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}

Probab=94.87  E-value=0.0098  Score=46.34  Aligned_cols=67  Identities=18%  Similarity=0.291  Sum_probs=50.5

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.+.+|+.|+.+.
T Consensus        42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~----~d~R~~~~~lT~~G~~~~  108 (152)
T 3bj6_A           42 QRAILEGLSLT-PGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNP----EHARSHRYWLTPRGEAII  108 (152)
T ss_dssp             HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCS----SSTTSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCc----ccccceeeEEChhhHHHH
Confidence            44456666654 68999999999999   679999999999999999997521    001112588999888654

>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=94.85  E-value=0.016  Score=44.71  Aligned_cols=67  Identities=15%  Similarity=0.235  Sum_probs=49.7

Q ss_pred             hCCccccc-ccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDII-NKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L-~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..| .. +++.|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.+.+|+.|+.+.
T Consensus        39 ~~~iL~~l~~~-~~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~----~d~R~~~~~lT~~G~~~~  106 (146)
T 2fbh_A           39 RWLVLLHLARH-RDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVA----EDRRAKHIVLTPKADVLI  106 (146)
T ss_dssp             HHHHHHHHHHC-SSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCB----TTBCSCEEEECTTHHHHH
T ss_pred             HHHHHHHHHHc-CCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCC----cccCeeeeEECHhHHHHH
Confidence            34456666 43 378999999999999   679999999999999999987521    001112488888888654

>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48

Probab=94.81  E-value=0.017  Score=41.55  Aligned_cols=60  Identities=23%  Similarity=0.326  Sum_probs=44.8

Q ss_pred             ccccCCCCCCHHHHHHHcCCCCCCccc-HHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           43 IINKHGKPTTLNDLVSALTINPSKTRC-VYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        43 ~L~~~~~~~t~~eLA~~~g~~~~~~~~-l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      .|...+.+.|..+||+.+++   +... +.++++.|...|++...+.+      .-.-.+.+|+.|+.+.
T Consensus        23 ~l~~~~~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~~d------rR~~~~~LT~~G~~~~   83 (95)
T 2pg4_A           23 EFEKKGYEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEETLS------YRVKTLKLTEKGRRLA   83 (95)
T ss_dssp             HHHHTTCCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEEEE------TTEEEEEECHHHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCCCC------CCeEEEEECHhHHHHH
Confidence            33443237999999999999   6788 99999999999999954320      0113588999988665

>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}

Probab=94.78  E-value=0.22  Score=39.10  Aligned_cols=97  Identities=9%  Similarity=0.055  Sum_probs=62.9

Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCc
Q 037127            4 IDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALT-INPSKTRCVYRLMRILIHSGF   82 (307)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g-~~~~~~~~l~r~L~~L~~~g~   82 (307)
                      -|+-.+-.-+.....+...+.+..+..+|...+.-      +  .+..|+++|++.++ +   ....+++.|+.|...|+
T Consensus         7 ~~~~~~~~~f~~~~~~~~~l~~~tR~~IL~~Ll~~------p--~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGL   75 (151)
T 3u1d_A            7 QDRGERPNGFGDELERRRFVLHETRLDVLHQILAQ------P--DGVLSVEELLYRNPDE---TEANLRYHVDELVDRGI   75 (151)
T ss_dssp             CBTTBCCTTHHHHHHHHHHHCCHHHHHHHHHHHHS------T--TSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTS
T ss_pred             ccCCCCchhHHHHHHHHHHhcchHHHHHHHHHHcC------C--CCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCC
Confidence            33333334444456666666666666665554332      1  15689999999998 8   67999999999999999


Q ss_pred             eeeeccCC-CCCCCCCCCeeecChhcchhh
Q 037127           83 FAQQTLNS-SRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        83 l~~~~~~~-~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +++..... .+..+.-.-.|++|+.|+...
T Consensus        76 V~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l  105 (151)
T 3u1d_A           76 VEKIPVPRAKSVDDPPTTFYAVTGEGIALL  105 (151)
T ss_dssp             EEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred             eEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence            99764311 000111112799999999554

>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}

Probab=94.77  E-value=0.039  Score=42.46  Aligned_cols=64  Identities=11%  Similarity=0.129  Sum_probs=50.6

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      ++.++..|... ++ |..+||+.+++   +...+.+.++.|...|++++....       .++   .+.+|+.|+.+..
T Consensus        39 ~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~-------~D~R~~~~~LT~~G~~~~~  105 (144)
T 3f3x_A           39 DFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDS-------KDRRIVIVEITPKGRQVLL  105 (144)
T ss_dssp             HHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET-------TEEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCC-------CCCceEEEEECHHHHHHHH
Confidence            55667777764 45 99999999999   679999999999999999987521       122   4899999986653

>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A

Probab=94.75  E-value=0.03  Score=46.88  Aligned_cols=52  Identities=17%  Similarity=0.362  Sum_probs=46.4

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      +++++..+||+.+++   +...+.+.++.|...|++++..          ...+.+|+.|+.+..
T Consensus        18 ~~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~----------~~~i~LT~~G~~~~~   69 (214)
T 3hrs_A           18 HNKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK----------KAGYLLTDLGLKLVS   69 (214)
T ss_dssp             CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET----------TTEEEECHHHHHHHH
T ss_pred             CCCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec----------CCCeEECHHHHHHHH
Confidence            379999999999999   6799999999999999999986          478999999986653

>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A

Probab=94.71  E-value=0.015  Score=41.91  Aligned_cols=61  Identities=15%  Similarity=0.218  Sum_probs=49.0

Q ss_pred             hCCcccccccCCCCCCHHHHHH-HcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVS-ALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~-~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      ++.|+-.|... ++.|+.+||+ ..++   +...+.|-++.|...|+++.++          ++ +.+|+.|+.+..
T Consensus        18 QfsiL~~L~~~-~~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~----------~D-l~LT~~G~~~l~   79 (95)
T 1bja_A           18 TATILITIAKK-DFITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG----------DG-LIITGEAQDIIS   79 (95)
T ss_dssp             HHHHHHHHHHS-TTBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET----------TE-EEECHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC----------CC-eeeCHhHHHHHH
Confidence            34455566665 5999999999 9999   7889999999999999999332          33 999999986653

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=94.70  E-value=0.17  Score=45.73  Aligned_cols=101  Identities=18%  Similarity=0.132  Sum_probs=69.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------cCCCeEEEecCCCC--C-CC-Ccc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------DLANLKYVGGDMFE--A-IP-PAD  257 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~~rv~~~~~d~~~--~-~p-~~D  257 (307)
                      ...+.+|||+-+|.|.=+.++++..++-.++..|+ +.-++.+++           ...++.+...|...  + .+ .||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            45678999999999999999999877767899998 443443332           23578888888876  1 23 499


Q ss_pred             EEEec----h----hh-------ccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEe
Q 037127          258 AVVLK----W----IL-------HDWNDEEC-------VKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       258 ~i~~~----~----vL-------h~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      .|++-    .    ++       ..|..++.       .+||+++.+.+||   ||+|+-..
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsT  284 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYST  284 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEe
Confidence            99862    1    11       22333221       4789999999999   77665433

>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28

Probab=94.70  E-value=0.013  Score=44.75  Aligned_cols=68  Identities=15%  Similarity=0.162  Sum_probs=50.0

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.+.+|+.|+.+..
T Consensus        36 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~----~d~R~~~~~lT~~G~~~~~  103 (138)
T 1jgs_A           36 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNP----NDKRGVLVKLTTGGAAICE  103 (138)
T ss_dssp             HHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECT----TCSSCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCc----ccCceeEeEEChhHHHHHH
Confidence            33445555543 68999999999999   679999999999999999987521    0001124889999986653

>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28

Probab=94.66  E-value=0.014  Score=44.92  Aligned_cols=66  Identities=14%  Similarity=0.120  Sum_probs=49.5

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +.++..|... ++.|..+||+.+++   +...+.++++.|...|++.+.....    +.-.-.+.+|+.|+.+.
T Consensus        32 ~~iL~~l~~~-~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~~----d~R~~~~~lT~~G~~~~   97 (144)
T 1lj9_A           32 YLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDAS----NKKIKRIYATEKGKNVY   97 (144)
T ss_dssp             HHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSS----CTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHC-cCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCC----CCceeeeEEChhHHHHH
Confidence            3455566654 68999999999999   6799999999999999999875210    00112488999988655

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=94.65  E-value=0.024  Score=43.74  Aligned_cols=67  Identities=12%  Similarity=0.130  Sum_probs=50.5

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+.
T Consensus        33 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~----D~R~~~~~LT~~G~~~~   99 (145)
T 3g3z_A           33 LFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEGEQ----DRRKRLLSLTETGKAYA   99 (145)
T ss_dssp             HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCCSS----CGGGSCEEECHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccCCC----CCceeeeeEChhHHHHH
Confidence            45566666554 67999999999999   6799999999999999999865210    00112589999998664

>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}

Probab=94.59  E-value=0.048  Score=42.93  Aligned_cols=68  Identities=18%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.+.+|+.|+.+..
T Consensus        55 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~----~DrR~~~~~LT~~G~~~~~  122 (161)
T 3e6m_A           55 KLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSISD----ADQRKRTVVLTRKGKKKLA  122 (161)
T ss_dssp             HHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC-------CCCSCEEEECHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCc----ccCCeeEeeECHHHHHHHH
Confidence            44466666654 68999999999999   678999999999999999987521    0011135899999986653

>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28

Probab=94.57  E-value=0.033  Score=42.79  Aligned_cols=64  Identities=17%  Similarity=0.245  Sum_probs=50.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.+.++.|...|++++....       .++   .|.+|+.|+.+.
T Consensus        35 ~~~iL~~l~~~-~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~-------~d~r~~~~~lT~~G~~~~  101 (145)
T 2a61_A           35 QFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDP-------ADRRAYFLVITRKGEEVI  101 (145)
T ss_dssp             HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET-------TEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCC-------CCCceEEEEECHHHHHHH
Confidence            45556666653 68999999999999   679999999999999999987521       122   488999888665

>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=94.57  E-value=0.028  Score=43.35  Aligned_cols=68  Identities=18%  Similarity=0.281  Sum_probs=50.3

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|...+++.|..+||+.+++   +...+.+.++.|...|++++....    .+.-.-.+.+|+.|+.+.
T Consensus        37 ~~~iL~~l~~~~~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~----~d~R~~~~~lT~~G~~~~  104 (147)
T 2hr3_A           37 QLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADP----QDGRRTRVSLSSEGRRNL  104 (147)
T ss_dssp             HHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC----------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCC----CCCCceeeEECHHHHHHH
Confidence            45566677651268999999999999   679999999999999999987521    001112488999988655

>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55

Probab=94.52  E-value=0.036  Score=43.28  Aligned_cols=46  Identities=11%  Similarity=0.200  Sum_probs=39.5

Q ss_pred             CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127           52 TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL  109 (307)
Q Consensus        52 t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~  109 (307)
                      |.++||+..++   ++..|+++|..|...||+....        | .|.|.++.-...
T Consensus        25 s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~r--------G-~GGy~Lar~p~~   70 (145)
T 1xd7_A           25 SSEIIADSVNT---NPVVVRRMISLLKKADILTSRA--------G-VPGASLKKDPAD   70 (145)
T ss_dssp             CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCS--------S-SSSCEESSCGGG
T ss_pred             CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeec--------C-CCCceecCCHHH
Confidence            99999999999   6899999999999999999775        3 577888765443

>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}

Probab=94.50  E-value=0.044  Score=42.54  Aligned_cols=67  Identities=16%  Similarity=0.249  Sum_probs=48.6

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... +++|..+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+.
T Consensus        43 q~~iL~~l~~~-~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~----D~R~~~~~LT~~G~~~~  109 (149)
T 4hbl_A           43 QYLVMLTLWEE-NPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQS----DKRQLIITLTDNGQQQQ  109 (149)
T ss_dssp             HHHHHHHHHHS-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC-------------CEEEECSHHHHHH
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCCC----CcceeeeeECHHHHHHH
Confidence            45556667654 78999999999999   6799999999999999999875210    00112588999888654

>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}

Probab=94.50  E-value=0.025  Score=44.22  Aligned_cols=67  Identities=10%  Similarity=0.151  Sum_probs=50.0

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.+.+|+.|+.+.
T Consensus        45 ~~~iL~~l~~~-~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~----~d~R~~~~~lT~~G~~~~  111 (155)
T 3cdh_A           45 EWRVLACLVDN-DAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADA----KDKRRVRVRLTDDGRALA  111 (155)
T ss_dssp             HHHHHHHHSSC-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC----------CCCEEECHHHHHHH
T ss_pred             HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCC----CcCCeeEeEECHHHHHHH
Confidence            44566677654 68999999999999   679999999999999999987421    000113488999988655

>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}

Probab=94.46  E-value=0.041  Score=44.77  Aligned_cols=75  Identities=19%  Similarity=0.280  Sum_probs=54.0

Q ss_pred             HHHHHHHHhCCcccccccCCCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALT-INPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g-~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      +++|.--.++.|+..|..  ++.|+.+||+.++ +   +...+.+.|+.|...|+++......  ..+.-+..|++++.+
T Consensus        17 ~~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~--~~g~~er~y~~~~~~   89 (182)
T 4g6q_A           17 VDLLHHPLRWRITQLLIG--RSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQ--VRGAVERTYTLNTQA   89 (182)
T ss_dssp             HHHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEE--ETTEEEEEEEECTTT
T ss_pred             HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeec--ccCcceeEEEecccc
Confidence            445555678888888875  7999999999996 7   5688999999999999998665210  011113458887765


Q ss_pred             chh
Q 037127          108 KLL  110 (307)
Q Consensus       108 ~~l  110 (307)
                      ..+
T Consensus        90 ~~~   92 (182)
T 4g6q_A           90 GDA   92 (182)
T ss_dssp             TTS
T ss_pred             ccC
Confidence            544

>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}

Probab=94.43  E-value=0.046  Score=43.43  Aligned_cols=66  Identities=18%  Similarity=0.206  Sum_probs=48.4

Q ss_pred             hCCcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           37 ELSIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      ++.++..|... ++++|..+||+.+++   +...+.++++.|...|++++...       ..++   .+.+|+.|+.+..
T Consensus        48 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~-------~~DrR~~~l~LT~~G~~~~~  117 (168)
T 3u2r_A           48 QYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLVLRTRK-------PENRRVVEVALTDAGLKLLK  117 (168)
T ss_dssp             HHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEE-------TTEEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEeecCC-------CCCCCeeEeEECHHHHHHHH
Confidence            44556666653 268999999999999   57899999999999999998752       1122   4889999886653

>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28

Probab=94.42  E-value=0.018  Score=45.08  Aligned_cols=67  Identities=16%  Similarity=0.188  Sum_probs=50.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.|.+|+.|+.+.
T Consensus        46 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~----~d~R~~~~~lT~~G~~~~  112 (154)
T 2eth_A           46 ELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDP----VDRRTYRVVLTEKGKEIF  112 (154)
T ss_dssp             HHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECT----TTSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCC----CCcceeEEEECHHHHHHH
Confidence            44556666554 58999999999999   679999999999999999987521    001112488999988665

>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}

Probab=94.38  E-value=0.015  Score=45.90  Aligned_cols=66  Identities=17%  Similarity=0.190  Sum_probs=49.3

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +.++..|... +++|..+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+.
T Consensus        53 ~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~----DrR~~~l~LT~~G~~~~  118 (159)
T 3s2w_A           53 FPFLMRLYRE-DGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDEK----DRRSYRVFLTEKGKKLE  118 (159)
T ss_dssp             HHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC-------CCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCC----CCCeeEEEECHHHHHHH
Confidence            3345566554 78999999999999   6799999999999999999875210    00012588999988665

>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}

Probab=94.37  E-value=0.12  Score=39.77  Aligned_cols=67  Identities=9%  Similarity=0.125  Sum_probs=49.8

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.+.++.|...|++++....    .+.-.-.+.+|+.|+.+.
T Consensus        44 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~----~d~R~~~~~lT~~G~~~~  110 (150)
T 2rdp_A           44 QFVALQWLLEE-GDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDE----HDRRVVRIRLLEKGERII  110 (150)
T ss_dssp             HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC----C---CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCC----CCcceeEeEECHhHHHHH
Confidence            34455666654 68999999999999   689999999999999999987521    000112488999988665

>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}

Probab=94.36  E-value=0.018  Score=45.47  Aligned_cols=67  Identities=12%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.|.+|+.|+.+.
T Consensus        54 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~----~d~R~~~~~lT~~G~~~~  120 (162)
T 3cjn_A           54 KMRALAILSAK-DGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDS----DDQRSSRVYLTPAGRAVY  120 (162)
T ss_dssp             HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC------CCSSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCC----CCCCeeEEEECHHHHHHH
Confidence            45566777654 68999999999999   679999999999999999987421    001123488999888654

>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*

Probab=94.31  E-value=0.031  Score=43.17  Aligned_cols=69  Identities=12%  Similarity=0.214  Sum_probs=51.2

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD  113 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~  113 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.+.+|+.|+.+...
T Consensus        42 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~----~d~R~~~~~LT~~G~~~~~~  110 (147)
T 1z91_A           42 QYLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSE----EDERSVLISLTEDGALLKEK  110 (147)
T ss_dssp             HHHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCS----SCTTSBEEEECHHHHSGGGG
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCC----CCCCeeEEEECHhHHHHHHH
Confidence            44455566543 68999999999999   689999999999999999987521    00112248899999866643

>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}

Probab=94.29  E-value=0.027  Score=44.29  Aligned_cols=50  Identities=18%  Similarity=0.250  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.|..+||+.+++   +...+.+.|+.|...|+++...          +..+.+|+.|+.+.
T Consensus        53 ~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~----------~~~~~lT~~g~~~~  102 (155)
T 2h09_A           53 GEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP----------WRGVFLTAEGEKLA  102 (155)
T ss_dssp             SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET----------TTEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec----------CCceEEChhHHHHH
Confidence            67999999999999   6799999999999999999875          46799999887654

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=94.28  E-value=0.016  Score=44.06  Aligned_cols=48  Identities=13%  Similarity=0.194  Sum_probs=39.1

Q ss_pred             hCCcccccccCCCC-CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           37 ELSIPDIINKHGKP-TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        37 ~lglfd~L~~~~~~-~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +..|+..|...++| +|+.|||+.+++   +...+.|.|+.|...|++.+..
T Consensus        28 e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~~   76 (123)
T 3r0a_A           28 DLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRSQ   76 (123)
T ss_dssp             HHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence            34455555544456 999999999999   6899999999999999999864

>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}

Probab=94.23  E-value=0.027  Score=38.54  Aligned_cols=55  Identities=16%  Similarity=0.238  Sum_probs=47.0

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT  104 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t  104 (307)
                      +-.|++.|.+.|.|++..+||+.+|+   +..-+...|..|-..|.+....          .-.|+++
T Consensus        21 eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk----------RCyw~~~   75 (80)
T 2lnb_A           21 EQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS----------PATWCLG   75 (80)
T ss_dssp             HHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE----------TTEEEES
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC----------CceeeCC
Confidence            44566777777899999999999999   7899999999999999999886          4678876

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.20  E-value=0.016  Score=65.07  Aligned_cols=98  Identities=15%  Similarity=0.173  Sum_probs=46.9

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCC-----CeEEEecc-hHHHHhchhc--CCCeEEEecCCCCC---CC-CccEEEechh
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPN-----LECTDFDL-PHVVNGLESD--LANLKYVGGDMFEA---IP-PADAVVLKWI  264 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~-----~~~~~~Dl-~~~~~~a~~~--~~rv~~~~~d~~~~---~p-~~D~i~~~~v  264 (307)
                      ..+||+||.|+|..+..+++....     .+.+..|. +...+.+++.  .-.++...-|..++   .+ .||+|+.+++
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence            468999999999877777665432     24666677 4444444420  01122222233222   12 4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      ||--++.  ...|+++++.|+|   ||++++.|..
T Consensus      1321 l~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~~ 1350 (2512)
T 2vz8_A         1321 LATLGDP--AVAVGNMAATLKE---GGFLLLHTLL 1350 (2512)
T ss_dssp             -------------------------CCEEEEEEC-
T ss_pred             ccccccH--HHHHHHHHHhcCC---CcEEEEEecc
Confidence            9955443  4789999999999   9999988743

>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28

Probab=94.15  E-value=0.038  Score=42.36  Aligned_cols=67  Identities=16%  Similarity=0.262  Sum_probs=50.4

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.+.++.|...|++++....    .+.-.-.+.+|+.|+.+.
T Consensus        39 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~----~d~R~~~~~lT~~G~~~~  105 (142)
T 2bv6_A           39 QFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSE----VDQREVFIHLTDKSETIR  105 (142)
T ss_dssp             HHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECS----SSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCC----CCcceEEEEEChHHHHHH
Confidence            45566666654 68999999999999   578999999999999999987521    001112588899988655

>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A

Probab=94.12  E-value=0.024  Score=44.23  Aligned_cols=69  Identities=10%  Similarity=0.206  Sum_probs=50.6

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD  113 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~  113 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.+.+|+.|+.+...
T Consensus        49 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~----~d~R~~~~~lT~~G~~~~~~  117 (153)
T 2pex_A           49 QYLVMLVLWET-DERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAA----SDERQVIIALTETGRALRSK  117 (153)
T ss_dssp             HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-----------CEEEECHHHHHGGGG
T ss_pred             HHHHHHHHHhC-CCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCc----ccCCeeEeeECHHHHHHHHH
Confidence            44456666654 68999999999999   679999999999999999987521    00011258899999866543

>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}

Probab=93.92  E-value=0.024  Score=42.51  Aligned_cols=50  Identities=20%  Similarity=0.335  Sum_probs=41.2

Q ss_pred             HHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           33 KCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        33 ~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ....++.++..|..  ++.|+.+||+.+|+   +...+.+.|+.|...|++....
T Consensus        30 ~~~~~~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~~   79 (119)
T 2lkp_A           30 ATPSRLMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGDR   79 (119)
T ss_dssp             CCHHHHHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CCHHHHHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence            33445666666665  57999999999999   6899999999999999998775

>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}

Probab=93.74  E-value=0.037  Score=42.62  Aligned_cols=66  Identities=15%  Similarity=0.259  Sum_probs=46.5

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|... + .|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.|.+|+.|..+.
T Consensus        40 ~~~iL~~l~~~-~-~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~~~----~d~R~~~~~lT~~g~~~~  105 (146)
T 3tgn_A           40 QEHILMLLSEE-S-LTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSKDS----KDARVIFYQLTDLARPIA  105 (146)
T ss_dssp             HHHHHHHHTTC-C-CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC--------------CCEECGGGHHHH
T ss_pred             HHHHHHHHHhC-C-CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEeccCC----CCCceeEEEECHhHHHHH
Confidence            44455666653 4 999999999999   679999999999999999987521    001123588888887654

>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64

Probab=93.66  E-value=0.046  Score=45.33  Aligned_cols=72  Identities=17%  Similarity=0.271  Sum_probs=51.1

Q ss_pred             HHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           30 MSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        30 ~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      .+|..-.++.|+..|..  +|.|+.+||+.+|+   +...+.+.|+.|...|++......  ...++..-.|++|+.+.
T Consensus        10 kaL~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~--~~~g~~~~~Y~Lt~~~~   81 (202)
T 2p4w_A           10 DVLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEK--IPRGRPRKYYMIKKGLR   81 (202)
T ss_dssp             HHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC--BTTBCCCEEEEECTTEE
T ss_pred             HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeec--cCCCCceEEEEEChHHH
Confidence            34444455555666654  79999999999999   679999999999999999987531  01112234588887654

>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}

Probab=93.62  E-value=0.014  Score=42.46  Aligned_cols=48  Identities=13%  Similarity=0.189  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      ++.|+.|||+.+|+   +...+.+.|+.|... ++.....       +....|++++.+
T Consensus        40 ~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~~-------gr~~~y~l~~~~   87 (99)
T 2zkz_A           40 KALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNRQ-------GLEIYYSINNPK   87 (99)
T ss_dssp             SCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEEE-------TTEEEEECCCHH
T ss_pred             CCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheEe-------CcEEEEEEChHH
Confidence            68999999999999   689999999999999 9987652       112357777643

>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}

Probab=93.52  E-value=0.086  Score=42.86  Aligned_cols=70  Identities=16%  Similarity=0.155  Sum_probs=52.0

Q ss_pred             HhCCcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           36 VELSIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        36 ~~lglfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      .++.++..|... ++++|..+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+..
T Consensus        42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~----DrR~~~l~LT~~G~~~~~  112 (189)
T 3nqo_A           42 RQYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSPH----DKRAINVKVTDLGKKVMV  112 (189)
T ss_dssp             HHHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS----CSSCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCC----CCCeeEEEECHHHHHHHH
Confidence            355566666531 268999999999999   6799999999999999999975210    001135899999986654

>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0

Probab=93.50  E-value=0.044  Score=42.41  Aligned_cols=69  Identities=10%  Similarity=0.167  Sum_probs=43.2

Q ss_pred             hCCcccccccCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           37 ELSIPDIINKHG-KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~-~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      ++.++..|...+ ++.|..+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+..
T Consensus        43 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~----DrR~~~~~LT~~G~~~~~  112 (148)
T 3jw4_A           43 QGRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRIPEN----NARQKNIYVLPKGAALVE  112 (148)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC------------CCCCBCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeCCCC----CchhheeeECHHHHHHHH
Confidence            344555555432 68999999999999   6789999999999999999875210    000125788998886653

>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}

Probab=93.48  E-value=0.044  Score=42.71  Aligned_cols=53  Identities=13%  Similarity=0.218  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      +++|..+||+.+++   +...+.++++.|...|++++...       ..++   .+.+|+.|+.+.
T Consensus        50 ~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~-------~~DrR~~~l~LT~~G~~~~  105 (147)
T 4b8x_A           50 GELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPN-------PNDGRGTLATITDKGREVV  105 (147)
T ss_dssp             GEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC-------C----CEEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeec-------CCcCceeEEEECHHHHHHH
Confidence            68999999999999   68999999999999999998863       1233   488999998665

>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D

Probab=93.43  E-value=0.047  Score=41.40  Aligned_cols=68  Identities=15%  Similarity=0.306  Sum_probs=49.2

Q ss_pred             CCcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           38 LSIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        38 lglfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      +.++..|... +++.|..+||+.+++   +...+.++++.|...|++++....    .+.-.-.+.+|+.|+.+..
T Consensus        40 ~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~----~D~R~~~i~LT~~G~~~~~  108 (127)
T 2frh_A           40 FAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNE----HDERTVLILVNAQQRKKIE  108 (127)
T ss_dssp             HHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCS----SSSCCCEEECCSHHHHHHH
T ss_pred             HHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC----CCCCeeEEEECHHHHHHHH
Confidence            3344455442 268999999999999   679999999999999999986421    0011235889999986653

>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=93.43  E-value=0.023  Score=43.54  Aligned_cols=64  Identities=13%  Similarity=0.126  Sum_probs=49.9

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++...       ..++   .+.+|+.|+.+.
T Consensus        38 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~~-------~~d~R~~~~~lT~~G~~~~  104 (142)
T 2fbi_A           38 QWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKA-------PKDQRRVYVNLTEKGQQCF  104 (142)
T ss_dssp             HHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecC-------CCCCCeeEEEECHHHHHHH
Confidence            45566666654 68999999999999   67999999999999999998742       1122   388999888655

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=93.26  E-value=0.57  Score=42.51  Aligned_cols=97  Identities=12%  Similarity=0.183  Sum_probs=65.8

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCe-EEEecc-hHHHHhchhcCCCeEEEecCCCCC----C-------CCccEEEechh
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLE-CTDFDL-PHVVNGLESDLANLKYVGGDMFEA----I-------PPADAVVLKWI  264 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~----~-------p~~D~i~~~~v  264 (307)
                      -+++|+=||.|.++..+.++  +.+ +.++|. +..++..+..-+...++++|+.+-    +       +.+|+++..-.
T Consensus         3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP   80 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP   80 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred             CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence            37999999999999999988  455 568998 555555554444677888888762    2       35899988776


Q ss_pred             hccCC-------hhHHHHHHHHHH---HhccCCCCCcEEEEEeeecC
Q 037127          265 LHDWN-------DEECVKILKKCK---EAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       265 Lh~~~-------~~~~~~~L~~~~---~~L~p~~~gg~lli~e~~~~  301 (307)
                      .-.|+       ++....++....   +.++|     +++++|.|..
T Consensus        81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~ENV~g  122 (376)
T 3g7u_A           81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLAENVPG  122 (376)
T ss_dssp             CCTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEEEECTT
T ss_pred             CCCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEEecchH
Confidence            65554       122224444444   34455     7888988754

>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28

Probab=93.05  E-value=0.021  Score=46.19  Aligned_cols=68  Identities=12%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             hCCcccccccCCCC--CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKP--TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~--~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|...+++  +|..+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+.
T Consensus        71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~----DrR~~~~~LT~~G~~~~  140 (181)
T 2fbk_A           71 GWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDER----DRRSASIRLTPQGRALV  140 (181)
T ss_dssp             HHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC-----------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCCC----CCCeeEEEECHHHHHHH
Confidence            44466667654333  999999999999   5789999999999999999874210    00012488999888655

>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A

Probab=93.00  E-value=0.018  Score=48.90  Aligned_cols=74  Identities=12%  Similarity=0.130  Sum_probs=52.0

Q ss_pred             HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee-eccCCCCCCCCCCCeeecChhc
Q 037127           29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQ-QTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~-~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      +.+|..-.++.|+..|..  +|.|+.+||+.+|+   ....+.+.|+.|...|++.. ...+.  ..+.-...|++++.+
T Consensus         6 lkaL~~~~R~~IL~~L~~--g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~~~~~gr--~~GRp~~~Y~Lt~~~   78 (232)
T 2qlz_A            6 FYILGNKVRRDLLSHLTC--MECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQSYEKEER--FIGPTKKYYKISIAK   78 (232)
T ss_dssp             HHHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEEEEECC-------CEEEEEECCCE
T ss_pred             HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeeecCC--CCCCccEEEEEccch
Confidence            344555556677777774  79999999999999   67899999999999999998 33100  000001248888876


Q ss_pred             ch
Q 037127          108 KL  109 (307)
Q Consensus       108 ~~  109 (307)
                      ..
T Consensus        79 ~~   80 (232)
T 2qlz_A           79 SY   80 (232)
T ss_dssp             EE
T ss_pred             hh
Confidence            53

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=92.82  E-value=0.041  Score=39.90  Aligned_cols=47  Identities=15%  Similarity=0.403  Sum_probs=38.7

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ++.|+..|... ++.|+.+||+.+|+   +...+.+.|+.|...|++....
T Consensus        22 ~~~il~~l~~~-~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~   68 (109)
T 1sfx_A           22 DVRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI   68 (109)
T ss_dssp             HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence            34445555433 68999999999999   6899999999999999999875

>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*

Probab=92.35  E-value=0.085  Score=41.13  Aligned_cols=52  Identities=13%  Similarity=0.227  Sum_probs=37.3

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      +++|..+||+.+++   +...+.++++.|...|++....+        .++   .+.+|+.|+.+.
T Consensus        51 ~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~~~--------~DrR~~~v~LT~~G~~~~  105 (148)
T 4fx0_A           51 IDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVMAG--------ADARCKRIELTAKGRAAL  105 (148)
T ss_dssp             ---CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC-------------------CCBCHHHHHHH
T ss_pred             CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCC--------CCCCeeEEEECHHHHHHH
Confidence            57999999999999   68999999999999999955432        122   488888888654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=92.31  E-value=0.38  Score=41.83  Aligned_cols=141  Identities=14%  Similarity=0.039  Sum_probs=87.7

Q ss_pred             CCCccccc----cCCcHHHHHHHHHHH-hch-hhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEec
Q 037127          154 GKSFWEYA----GDEPKINNFFNEAMA-SDA-RLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFD  227 (307)
Q Consensus       154 g~~~~~~~----~~~~~~~~~f~~~m~-~~~-~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D  227 (307)
                      |...|+--    .+..|......+.+. ... ......++..+.. + ....+||+=+|||.++.++++.  .-+++.+|
T Consensus        45 G~G~Y~L~~~~a~ktgE~~~GI~rl~~~~~~~p~~l~~yf~~l~~-~-n~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE  120 (283)
T 2oo3_A           45 GRGIYDLKDKQSLKTEEYKEGINPVWLDRENLPSLFLEYISVIKQ-I-NLNSTLSYYPGSPYFAINQLRS--QDRLYLCE  120 (283)
T ss_dssp             TTSEEETTCC----CCGGGGTHHHHHHTGGGSCGGGHHHHHHHHH-H-SSSSSCCEEECHHHHHHHHSCT--TSEEEEEC
T ss_pred             CcCccCCCChHHhhcHHHHHHHHHHHhcccCCcHHHHHHHHHHHH-h-cCCCceeEeCCcHHHHHHHcCC--CCeEEEEe
Confidence            45666542    244555555555544 111 1112233333331 2 3456899999999999999994  56899999


Q ss_pred             c-hHHHHhchh---cCCCeEEEecCCCCC----CC---CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          228 L-PHVVNGLES---DLANLKYVGGDMFEA----IP---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       228 l-~~~~~~a~~---~~~rv~~~~~d~~~~----~p---~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      + +..++..++   ..++++++..|.++.    .|   .+|+|++-=.-..  ..+..++++.+.+..+- .++|.++|+
T Consensus       121 ~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~--k~~~~~vl~~L~~~~~r-~~~Gi~v~W  197 (283)
T 2oo3_A          121 LHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYER--KEEYKEIPYAIKNAYSK-FSTGLYCVW  197 (283)
T ss_dssp             CSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCS--TTHHHHHHHHHHHHHHH-CTTSEEEEE
T ss_pred             CCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCC--CcHHHHHHHHHHHhCcc-CCCeEEEEE
Confidence            9 777777776   457899999997651    12   4899887644432  22445667666665431 127999998


Q ss_pred             eeecC
Q 037127          297 DMMRE  301 (307)
Q Consensus       297 e~~~~  301 (307)
                      =++..
T Consensus       198 YPi~~  202 (283)
T 2oo3_A          198 YPVVN  202 (283)
T ss_dssp             EEESS
T ss_pred             Eeccc
Confidence            87765

>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41

Probab=92.26  E-value=0.043  Score=40.48  Aligned_cols=46  Identities=22%  Similarity=0.388  Sum_probs=37.5

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      +.|+..+...|.+.|..+||+.+|+   +...+++.|..|...|+++..
T Consensus        21 l~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~   66 (110)
T 1q1h_A           21 IDVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR   66 (110)
T ss_dssp             HHHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence            3455555323348999999999999   678999999999999999887

>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28

Probab=92.23  E-value=0.043  Score=45.56  Aligned_cols=68  Identities=10%  Similarity=0.116  Sum_probs=50.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      ++.++..|... +++|..+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+..
T Consensus        50 q~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~~----DrR~~~l~LT~~G~~~~~  117 (207)
T 2fxa_A           50 EHHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLN----DKRNTYVQLTEEGTEVFW  117 (207)
T ss_dssp             HHHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC----------CEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCC----CCceEEEEECHHHHHHHH
Confidence            34455666554 68999999999999   6799999999999999999985210    000125899999986653

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=92.11  E-value=0.28  Score=42.88  Aligned_cols=92  Identities=16%  Similarity=0.165  Sum_probs=59.6

Q ss_pred             ccCCCeEEEecC------CchHHHHHHHHHCCC-CeEEEecchHHHHhchhcCCCeEEEecCCCCC-C-CCccEEEechh
Q 037127          194 FEGLNSLVDVGG------ATGTVAKAIAKAFPN-LECTDFDLPHVVNGLESDLANLKYVGGDMFEA-I-PPADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGg------G~G~~~~~l~~~~p~-~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~-~-p~~D~i~~~~v  264 (307)
                      .+-..+|||+|+      -+|.+  .+.+..|. ..++.+|+.++...+     . .++.||+.+. . ..+|+|+.-+.
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda-----~-~~IqGD~~~~~~~~k~DLVISDMA  178 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA-----D-STLIGDCATVHTANKWDLIISDMY  178 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS-----S-EEEESCGGGEEESSCEEEEEECCC
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC-----C-eEEEccccccccCCCCCEEEecCC
Confidence            345789999995      67773  44556776 689999985543211     1 4589997662 2 35999977552


Q ss_pred             ----hc---cC--ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          265 ----LH---DW--NDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       265 ----Lh---~~--~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                          -+   +-  ...-+...|.=+.+.|+|   ||.+++=
T Consensus       179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK  216 (344)
T 3r24_A          179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK  216 (344)
T ss_dssp             CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             CCcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence                11   11  122356677778889999   8887753

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=91.89  E-value=0.2  Score=38.98  Aligned_cols=59  Identities=20%  Similarity=0.334  Sum_probs=45.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT  104 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t  104 (307)
                      +.-|++.|...+++.|++||.+.+     ++   +..-+.|.|+.|...|++.+....      ++..+|.++
T Consensus        24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~------~~~~~Y~~~   87 (145)
T 2fe3_A           24 RHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELTYG------DASSRFDFV   87 (145)
T ss_dssp             HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEECCT------TSCCEEEEC
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEeeC------CCceEEECC
Confidence            445677776544799999999998     56   678999999999999999988631      223567754

>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A

Probab=91.82  E-value=0.03  Score=42.01  Aligned_cols=51  Identities=18%  Similarity=0.341  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHcC----CCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCe---eecChhcchhh
Q 037127           49 KPTTLNDLVSALT----INPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQG---YVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g----~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~---y~~t~~s~~l~  111 (307)
                      ++.|..+||+.++    +   ....+.++|+.|...|++++...         +++   +.+|+.|+.+.
T Consensus        23 ~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~~---------~rr~~~~~lT~~g~~~~   80 (123)
T 1okr_A           23 KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKKD---------NKIFQYYSLVEESDIKY   80 (123)
T ss_dssp             SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEEE---------TTEEEEEESSCHHHHHH
T ss_pred             CCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEec---------CCeEEEEEecCHHHHHH
Confidence            6899999999999    5   47899999999999999999862         222   46788777554

>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19

Probab=91.78  E-value=0.18  Score=34.41  Aligned_cols=42  Identities=17%  Similarity=0.090  Sum_probs=36.2

Q ss_pred             cccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           42 DIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        42 d~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +.|+. |+..|+.+||.++|+   +-.-+.|.|..|...|++...+
T Consensus        22 ~~L~~-~~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~   63 (75)
T 1sfu_A           22 LSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVP   63 (75)
T ss_dssp             HTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HhCCC-CcchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCC
Confidence            36665 356999999999999   5678999999999999999886

>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}

Probab=91.64  E-value=0.13  Score=39.33  Aligned_cols=50  Identities=18%  Similarity=0.284  Sum_probs=40.5

Q ss_pred             HhCCcccccccCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127           36 VELSIPDIINKHGKPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQTL   88 (307)
Q Consensus        36 ~~lglfd~L~~~~~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~~   88 (307)
                      -+.-|++.|...+++.|++||.+.+     ++   +..-+.|.|+.|...|++.+...
T Consensus        12 qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~~   66 (131)
T 2o03_A           12 QRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLHT   66 (131)
T ss_dssp             HHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEEC
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEEe
Confidence            3445566665444799999999998     67   67899999999999999998863

>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B

Probab=91.57  E-value=0.071  Score=36.99  Aligned_cols=49  Identities=18%  Similarity=0.352  Sum_probs=37.3

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCC-CCcccHHHHHHHHHhCCceeeec
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINP-SKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~-~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ..|++.|... ++.|+.||++.++..+ -+...+.++|+.|...|++.+..
T Consensus        12 ~~vL~~L~~~-~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~   61 (82)
T 1p6r_A           12 LEVMKVIWKH-SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK   61 (82)
T ss_dssp             HHHHHHHHTS-SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHcC-CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence            3344555543 6899999999997310 04688999999999999999986

>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A

Probab=91.24  E-value=0.14  Score=41.92  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=43.6

Q ss_pred             HHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           30 MSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        30 ~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      .++....+..|+..|..  ++.|..|||+.+|+   ++..+.+.++.|...|++...
T Consensus        15 k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~   66 (192)
T 1uly_A           15 KVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK   66 (192)
T ss_dssp             HHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence            34444556677788873  79999999999999   679999999999999999987

>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}

Probab=91.15  E-value=0.057  Score=39.35  Aligned_cols=50  Identities=12%  Similarity=0.189  Sum_probs=39.6

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCC-CCcccHHHHHHHHHhCCceeeec
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINP-SKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~-~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ++.|+..|... ++.|+.||++.++..+ -....+.++|+.|...|++.+..
T Consensus        37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~   87 (99)
T 2k4b_A           37 ELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK   87 (99)
T ss_dssp             CSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence            45566677654 6899999999998520 04678999999999999999986

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=91.14  E-value=0.31  Score=41.77  Aligned_cols=41  Identities=20%  Similarity=0.128  Sum_probs=34.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES  237 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~  237 (307)
                      .....|||..||+|..+.+..+.  +-+++++|+ |..++.+++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~  252 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANF  252 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence            45678999999999999999887  568999999 777776654

>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}

Probab=91.06  E-value=0.16  Score=38.67  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=32.6

Q ss_pred             CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ..|..+||+.+|+   ++..+.+.++.|...|++.+..
T Consensus        51 ~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~   85 (128)
T 2vn2_A           51 FPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEE   85 (128)
T ss_dssp             SCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC
T ss_pred             CCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence            4799999999999   7899999999999999999975

>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50

Probab=91.01  E-value=0.16  Score=36.58  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=33.8

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ++.|..|||+.+|+   +...+.+.|+.|...|++.+..
T Consensus        35 ~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~   70 (109)
T 2d1h_A           35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK   70 (109)
T ss_dssp             SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence            68999999999999   6799999999999999999875

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=90.97  E-value=1.1  Score=40.89  Aligned_cols=68  Identities=18%  Similarity=0.280  Sum_probs=42.4

Q ss_pred             CcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-------CCCeEEEecchHHHHhch
Q 037127          164 EPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-------PNLECTDFDLPHVVNGLE  236 (307)
Q Consensus       164 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------p~~~~~~~Dl~~~~~~a~  236 (307)
                      .|+....|.+..+.+.   .+.+ ....  .+..-.|+++|+|+|.++..+++..       ..++++++|.++.+...+
T Consensus        54 apeis~~FGe~la~~~---~~~w-~~~g--~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q  127 (387)
T 1zkd_A           54 SPEISQMFGELLGLWS---ASVW-KAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQ  127 (387)
T ss_dssp             HHHHCHHHHHHHHHHH---HHHH-HHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHH
T ss_pred             CCchHHHHHHHHHHHH---HHHH-HHcC--CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHH
Confidence            3566666766555332   2211 1222  2344579999999999999887652       345899999965555443


Q ss_pred             h
Q 037127          237 S  237 (307)
Q Consensus       237 ~  237 (307)
                      +
T Consensus       128 ~  128 (387)
T 1zkd_A          128 Q  128 (387)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A

Probab=90.81  E-value=0.12  Score=40.26  Aligned_cols=47  Identities=15%  Similarity=0.167  Sum_probs=39.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +..|+..|..+ ++.|..|||+.+|+   ++..+.+.++.|...|++.+..
T Consensus         9 ~~~iL~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~   55 (150)
T 2w25_A            9 DRILVRELAAD-GRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGYS   55 (150)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEE
Confidence            34456666654 78999999999999   6799999999999999998653

>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2

Probab=90.81  E-value=0.12  Score=39.97  Aligned_cols=45  Identities=20%  Similarity=0.265  Sum_probs=38.7

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      ..|++.|..+ ++.|..|||+.+|+   ++..+.+.++.|...|++.+.
T Consensus         8 ~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   52 (144)
T 2cfx_A            8 LNIIEELKKD-SRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY   52 (144)
T ss_dssp             HHHHHHHHHC-SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence            3466667654 78999999999999   679999999999999999875

>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*

Probab=90.80  E-value=0.1  Score=40.63  Aligned_cols=46  Identities=15%  Similarity=0.266  Sum_probs=39.5

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      +..|+..|..+ ++.|..|||+.+|+   ++..+.+.++.|...|++...
T Consensus         5 ~~~il~~L~~~-~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   50 (150)
T 2pn6_A            5 DLRILKILQYN-AKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGY   50 (150)
T ss_dssp             HHHHHHHHTTC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEE
Confidence            44567777754 68999999999999   689999999999999999874

>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28

Probab=90.76  E-value=0.1  Score=44.72  Aligned_cols=66  Identities=20%  Similarity=0.277  Sum_probs=51.2

Q ss_pred             hCCcccccccCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           37 ELSIPDIINKHG-KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~-~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      ++.++..|...+ ++.|..+||+.+++   +...+.++++-|...|++++...       ..++   ...+|+.|+.+..
T Consensus       160 q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~-------~~DrR~~~i~LT~~G~~~~~  229 (250)
T 1p4x_A          160 EFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERS-------TEDERKILIHMDDAQQDHAE  229 (250)
T ss_dssp             HHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEEC-------SSSTTCEEEECCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCC-------CCCCCeEEEEECHHHHHHHH
Confidence            444566666543 35999999999999   68999999999999999999863       1233   4888999986653

>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6

Probab=90.73  E-value=0.23  Score=35.92  Aligned_cols=53  Identities=13%  Similarity=0.285  Sum_probs=40.2

Q ss_pred             HHHHHHhCCccc-ccccCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           31 SLKCAVELSIPD-IINKHGKPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        31 ~L~~a~~lglfd-~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .+...++..|.+ .+.. |..+ |..+||+.+|+   ....+++.|..|...|+++...
T Consensus        15 ~l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~   69 (102)
T 1v4r_A           15 DVATHFRTLIKSGELAP-GDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG   69 (102)
T ss_dssp             HHHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred             HHHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence            344444555555 3343 3566 99999999999   5789999999999999999875

>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36

Probab=90.42  E-value=0.59  Score=35.57  Aligned_cols=36  Identities=28%  Similarity=0.379  Sum_probs=33.6

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ++.|+.+||+.+|+   +...+.++++.|...|++++..
T Consensus        40 ~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~~   75 (152)
T 1ku9_A           40 KPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW   75 (152)
T ss_dssp             SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence            68999999999999   6789999999999999999874

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=90.26  E-value=0.45  Score=43.70  Aligned_cols=54  Identities=11%  Similarity=0.136  Sum_probs=41.3

Q ss_pred             cCCCeEEEecCCchHHHHHHH-HHCCC-CeEEEecc-hHHHHhchh---c-----C-CCeEEEecC
Q 037127          195 EGLNSLVDVGGATGTVAKAIA-KAFPN-LECTDFDL-PHVVNGLES---D-----L-ANLKYVGGD  248 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~-~~~p~-~~~~~~Dl-~~~~~~a~~---~-----~-~rv~~~~~d  248 (307)
                      .+...|+|||++.|.++..++ +..+. .+++.++. |...+..++   .     . +++++++.-
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~a  290 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCG  290 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeE
Confidence            567899999999999999988 66765 79999998 776666654   2     3 566666543

>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A

Probab=90.25  E-value=0.14  Score=40.42  Aligned_cols=45  Identities=16%  Similarity=0.245  Sum_probs=38.5

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      ..|+..|..+ ++.|..|||+.+|+   ++..+.+.++.|...|++...
T Consensus        13 ~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   57 (162)
T 2p5v_A           13 IKILQVLQEN-GRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQY   57 (162)
T ss_dssp             HHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeee
Confidence            3456666654 78999999999999   679999999999999999875

>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42

Probab=90.11  E-value=0.32  Score=37.29  Aligned_cols=59  Identities=15%  Similarity=0.356  Sum_probs=44.2

Q ss_pred             hCCcccccccCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127           37 ELSIPDIINKHG-KPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT  104 (307)
Q Consensus        37 ~lglfd~L~~~~-~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t  104 (307)
                      +.-|++.|...+ ++.|++||.+.+     ++   +..-+.|.|+.|...|++.+....      ++..+|.++
T Consensus        20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~------~~~~~Y~~~   84 (136)
T 1mzb_A           20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDV---GLATVYRVLTQFEAAGLVVRHNFD------GGHAVFELA   84 (136)
T ss_dssp             HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEECSS------SSSCEEEES
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHCCcEEEEEeC------CCceEEEeC
Confidence            444667776544 689999999998     56   678999999999999999988631      223568753

>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}

Probab=89.95  E-value=0.45  Score=30.44  Aligned_cols=44  Identities=11%  Similarity=0.176  Sum_probs=39.0

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA  106 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~  106 (307)
                      .+.|+.|+|...|+   +.+..+.-|+.|...|-|.+..           .+|++.|-
T Consensus        17 QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKRs-----------SRYrlkph   60 (68)
T 3i71_A           17 QGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKRS-----------SRYRLKPH   60 (68)
T ss_dssp             TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-----------CEEEECC-
T ss_pred             ccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhhc-----------cccccCcc
Confidence            57999999999999   6889999999999999999984           78988764

>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...

Probab=89.67  E-value=0.36  Score=40.49  Aligned_cols=50  Identities=10%  Similarity=0.143  Sum_probs=43.1

Q ss_pred             CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      +.+..+||+.+++   +...+.+.++.|...|++++..          ...+.+|+.|+.+..
T Consensus        24 ~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~----------~~~v~LT~~G~~~~~   73 (226)
T 2qq9_A           24 TPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS----------DRSLQMTPTGRTLAT   73 (226)
T ss_dssp             CCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT----------TSBEEECHHHHHHHH
T ss_pred             CccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC----------CCCeEECHHHHHHHH
Confidence            4466999999999   6789999999999999999986          477999999986553

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=89.65  E-value=0.16  Score=41.60  Aligned_cols=39  Identities=18%  Similarity=0.411  Sum_probs=33.4

Q ss_pred             cCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           46 KHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        46 ~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +.|.|.|..|||+.+|++   ...+.+.|+.|...|++.+..
T Consensus        20 ~~g~~~s~~eia~~lgl~---~~tv~~~l~~Le~~G~i~~~~   58 (196)
T 3k2z_A           20 KNGYPPSVREIARRFRIT---PRGALLHLIALEKKGYIERKN   58 (196)
T ss_dssp             HHSSCCCHHHHHHHHTSC---HHHHHHHHHHHHHTTSEECC-
T ss_pred             HhCCCCCHHHHHHHcCCC---cHHHHHHHHHHHHCCCEEecC
Confidence            334689999999999994   568999999999999999874

>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}

Probab=89.63  E-value=0.2  Score=32.01  Aligned_cols=46  Identities=17%  Similarity=0.296  Sum_probs=40.1

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      ..|++.|..+||-+.++..|++.|+   +.+-+..+|+.|...|++..+
T Consensus        13 ~~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~le   58 (59)
T 2xvc_A           13 RELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAVE   58 (59)
T ss_dssp             HHHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecc
Confidence            3467778888899999999999999   678899999999999998764

>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2

Probab=89.53  E-value=0.24  Score=41.61  Aligned_cols=54  Identities=19%  Similarity=0.173  Sum_probs=45.3

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      ++.|+.++|+.+++   +...+.+.++.|...|+|++...       .-...+.+|+.|+.+..
T Consensus        26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~-------~R~~~v~LT~~G~~l~~   79 (230)
T 3cta_A           26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVT-------KRGQILNITEKGLDVLY   79 (230)
T ss_dssp             EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEECHHHHHHHH
T ss_pred             CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEc-------CCeEEEEECHHHHHHHH
Confidence            57999999999999   68999999999999999999831       01257999999987653

>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}

Probab=89.44  E-value=0.27  Score=37.91  Aligned_cols=61  Identities=15%  Similarity=0.200  Sum_probs=45.5

Q ss_pred             HhCCcccccccCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127           36 VELSIPDIINKHGKPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN  105 (307)
Q Consensus        36 ~~lglfd~L~~~~~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~  105 (307)
                      -+.-|++.|...+++.|++||.+.+     ++   +..-+.|.|+.|...|++.+...      +++..+|.+..
T Consensus        15 qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~------~~g~~~Y~~~~   80 (139)
T 3mwm_A           15 QRAAVSAALQEVEEFRSAQELHDMLKHKGDAV---GLTTVYRTLQSLADAGEVDVLRT------AEGESVYRRCS   80 (139)
T ss_dssp             HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSSEEEEC------TTSCEEEECCS
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCEEEEEc------CCCceEEEECC
Confidence            3455666666545799999999988     45   67899999999999999998763      12345677653

>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2

Probab=89.44  E-value=0.16  Score=39.72  Aligned_cols=45  Identities=9%  Similarity=0.168  Sum_probs=38.7

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      ..|+..|..+ ++.|..|||+.+|+   ++..+.+.++.|...|++...
T Consensus        11 ~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   55 (152)
T 2cg4_A           11 RGILEALMGN-ARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA   55 (152)
T ss_dssp             HHHHHHHHHC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceE
Confidence            3456667664 78999999999999   679999999999999999975

>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61

Probab=89.41  E-value=0.46  Score=35.44  Aligned_cols=68  Identities=25%  Similarity=0.353  Sum_probs=48.7

Q ss_pred             HhCCcccccccCCCCCCHHHHHHHcC--------CCCCCc-ccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127           36 VELSIPDIINKHGKPTTLNDLVSALT--------INPSKT-RCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA  106 (307)
Q Consensus        36 ~~lglfd~L~~~~~~~t~~eLA~~~g--------~~~~~~-~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~  106 (307)
                      +++-|+..|..  +|.+.-+|++.+.        +   ++ ..+.+.|+.|...|+++......   ++...-.|++|+.
T Consensus        14 ~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~---~~~~r~~Y~LT~~   85 (118)
T 2esh_A           14 LASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTT---VSPPRKIYRITPQ   85 (118)
T ss_dssp             HHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECS---SSSCEEEEEECHH
T ss_pred             HHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecC---CCCCceEEEEChH
Confidence            34445555554  6899999999983        4   67 89999999999999999875210   0011235999999


Q ss_pred             cchhh
Q 037127          107 SKLLL  111 (307)
Q Consensus       107 s~~l~  111 (307)
                      |+.+.
T Consensus        86 G~~~l   90 (118)
T 2esh_A           86 GKLYL   90 (118)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=89.40  E-value=1.3  Score=39.48  Aligned_cols=102  Identities=6%  Similarity=0.080  Sum_probs=62.7

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchhcCCCeEEEecCCCCC----CC--CccEEEechhhccCC
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLESDLANLKYVGGDMFEA----IP--PADAVVLKWILHDWN  269 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~----~p--~~D~i~~~~vLh~~~  269 (307)
                      .+++|+-||.|.+...+.++.-.. .+.++|. +..++..+...+...++.+|+.+-    ++  .+|+++..-....|+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS   82 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT   82 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence            479999999999999999884222 4788898 666666665334455778898762    23  589999887655443


Q ss_pred             hh--------HHHHHHHHHHHhccCCCCC--cEEEEEeeecC
Q 037127          270 DE--------ECVKILKKCKEAITSNSKI--GKVIIIDMMRE  301 (307)
Q Consensus       270 ~~--------~~~~~L~~~~~~L~p~~~g--g~lli~e~~~~  301 (307)
                      ..        ..-.++.++.+.++.-  .  -+++++|.|..
T Consensus        83 ~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~  122 (343)
T 1g55_A           83 RIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKG  122 (343)
T ss_dssp             -------------CHHHHHHHHGGGC--SSCCSEEEEEEETT
T ss_pred             hcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCcc
Confidence            21        1123455444444321  1  26888887753

>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A

Probab=89.34  E-value=0.29  Score=41.15  Aligned_cols=48  Identities=13%  Similarity=0.140  Sum_probs=41.9

Q ss_pred             CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           51 TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        51 ~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      .+..+||+.+++   +...+.+.|+.|...|++++..          +..+.+|+.|+.+.
T Consensus        25 ~~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~----------~~~v~LT~~G~~~~   72 (230)
T 1fx7_A           25 PLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG----------DRHLELTEKGRALA   72 (230)
T ss_dssp             CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT----------TSCEEECHHHHHHH
T ss_pred             CcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC----------CccEEECHHHHHHH
Confidence            345999999999   6789999999999999999986          46899999998654

>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}

Probab=89.20  E-value=0.17  Score=39.39  Aligned_cols=46  Identities=15%  Similarity=0.280  Sum_probs=39.2

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      +..|+..|..+ ++.|..|||+.+|+   ++..+.+.++.|...|++...
T Consensus        11 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   56 (151)
T 2dbb_A           11 DMQLVKILSEN-SRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKF   56 (151)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence            34566677664 78999999999999   679999999999999999865

>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}

Probab=88.83  E-value=0.21  Score=39.98  Aligned_cols=46  Identities=15%  Similarity=0.227  Sum_probs=39.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      +..|+..|..+ ++.|..|||+.+|+   ++..+.+.++.|...|++...
T Consensus        19 d~~IL~~L~~~-~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~   64 (171)
T 2ia0_A           19 DRNILRLLKKD-ARLTISELSEQLKK---PESTIHFRIKKLQERGVIERY   64 (171)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence            34566777764 68999999999999   679999999999999999865

>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2

Probab=88.82  E-value=0.14  Score=40.01  Aligned_cols=46  Identities=15%  Similarity=0.235  Sum_probs=38.9

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      +..|+..|..+ ++.|..+||+.+|+   ++..+.+.++.|...|++...
T Consensus         9 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   54 (151)
T 2cyy_A            9 DKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKF   54 (151)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence            33456667654 78999999999999   679999999999999999865

>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}

Probab=88.69  E-value=0.19  Score=39.83  Aligned_cols=46  Identities=15%  Similarity=0.313  Sum_probs=39.9

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      +..|++.|..+ +++|..+||+++|+   ++..+++-++.|...|++...
T Consensus         5 d~~il~~L~~~-~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~   50 (162)
T 3i4p_A            5 DRKILRILQED-STLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRR   50 (162)
T ss_dssp             HHHHHHHHTTC-SCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeec
Confidence            44577788764 79999999999999   679999999999999999864

>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1

Probab=88.65  E-value=0.32  Score=39.52  Aligned_cols=57  Identities=21%  Similarity=0.388  Sum_probs=44.5

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCc-eeeeccCCCCCCCCCCCeeecChhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGF-FAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~-l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      ...|++.|...++++|+.|||+.+|+   ..+.++|-++.|...|+ +...           .+.|.+.+..
T Consensus        23 ~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~-----------~~Gy~l~~~~   80 (187)
T 1j5y_A           23 LKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT-----------PRGYVLAGGK   80 (187)
T ss_dssp             HHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE-----------TTEEECCTTT
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE-----------CCEEEECCcc
Confidence            44566677643467999999999999   68999999999999999 7654           3668777543

>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2

Probab=88.64  E-value=0.44  Score=39.19  Aligned_cols=49  Identities=22%  Similarity=0.291  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++++..+||+.+++   .+..++..++.|...|+++..+           +...+|+.|+.++
T Consensus        29 ~~V~~~~LA~~Lgv---S~~SV~~~lkkL~e~GLV~~~~-----------~Gv~LTe~G~~~A   77 (200)
T 2p8t_A           29 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ-----------RGHFLTLKGKEIR   77 (200)
T ss_dssp             SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-------------CEEECHHHHHHH
T ss_pred             CCccHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEeC-----------CCeEECHHHHHHH
Confidence            58999999999999   6799999999999999999884           7899999998654

>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}

Probab=88.36  E-value=0.31  Score=38.13  Aligned_cols=52  Identities=12%  Similarity=0.307  Sum_probs=41.8

Q ss_pred             HHHhCCcccccccCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127           34 CAVELSIPDIINKHGKPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQTL   88 (307)
Q Consensus        34 ~a~~lglfd~L~~~~~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~~   88 (307)
                      +.-+.-|++.|...+++.|++||.+.+     ++   +..-+.|.|+.|...|++.+...
T Consensus        26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~   82 (150)
T 2xig_A           26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT---SISSVYRILNFLEKENFISVLET   82 (150)
T ss_dssp             HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCcEEEEEe
Confidence            334555677776545799999999998     56   67899999999999999998763

>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2

Probab=87.77  E-value=0.18  Score=38.72  Aligned_cols=44  Identities=20%  Similarity=0.331  Sum_probs=37.2

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      .|+..|..+ ++.|..|||+.+|+   ++..+.+.++.|...|++...
T Consensus         8 ~il~~L~~~-~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   51 (141)
T 1i1g_A            8 IILEILEKD-ARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGY   51 (141)
T ss_dssp             HHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEecc
Confidence            455566553 68999999999999   679999999999999999865

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=87.33  E-value=2.7  Score=37.22  Aligned_cols=95  Identities=13%  Similarity=0.124  Sum_probs=60.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCe-EEEecc-hHHHHhchh-cCCCeEEEecCCCC----CCCCccEEEechhhccCC
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLE-CTDFDL-PHVVNGLES-DLANLKYVGGDMFE----AIPPADAVVLKWILHDWN  269 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~----~~p~~D~i~~~~vLh~~~  269 (307)
                      ..+++|+-||.|.++..+.++  +.+ +..+|. +..++..+. .....   .+|+.+    ..|.+|+++..-....|+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~---~~Di~~~~~~~~~~~D~l~~gpPCQ~fS   85 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP---EGDITQVNEKTIPDHDILCAGFPCQAFS   85 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC---BSCGGGSCGGGSCCCSEEEEECCCTTTC
T ss_pred             CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC---cCCHHHcCHhhCCCCCEEEECCCCCCcc
Confidence            468999999999999999887  454 667888 555555544 22211   578776    245789998886555443


Q ss_pred             h--------hHHHHHHHH---HHHhccCCCCCcEEEEEeeecC
Q 037127          270 D--------EECVKILKK---CKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       270 ~--------~~~~~~L~~---~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      .        +..-.++..   +.+.++|     +++++|.|..
T Consensus        86 ~ag~~~g~~d~r~~L~~~~~r~i~~~~P-----~~~~~ENV~g  123 (327)
T 2c7p_A           86 ISGKQKGFEDSRGTLFFDIARIVREKKP-----KVVFMENVKN  123 (327)
T ss_dssp             TTSCCCGGGSTTSCHHHHHHHHHHHHCC-----SEEEEEEEGG
T ss_pred             hhcccCCCcchhhHHHHHHHHHHHhccC-----cEEEEeCcHH
Confidence            1        111123333   3344566     7889998754

>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39

Probab=87.17  E-value=0.25  Score=37.87  Aligned_cols=47  Identities=17%  Similarity=0.250  Sum_probs=37.7

Q ss_pred             CCcccccccCCCCCCHHHHHHHcC----CCCCCcccHHHHHHHHHhCCceeeec
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALT----INPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g----~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +.|+..|...+++.|..+|++.++    +   +...+.++|+-|...|++.+..
T Consensus        12 ~~vL~~L~~~~~~~t~~el~~~l~~~~~~---~~~Tvt~~l~rLe~kGlv~r~~   62 (138)
T 2g9w_A           12 RAVMDHLWSRTEPQTVRQVHEALSARRDL---AYTTVMAVLQRLAKKNLVLQIR   62 (138)
T ss_dssp             HHHHHHHHTCSSCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHhccCCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence            334445544226899999999998    6   5789999999999999999986

>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}

Probab=87.00  E-value=0.35  Score=37.23  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=33.0

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ...|.++||+++|+   ++..+.++|..|...|++....
T Consensus        50 ~~ps~~~LA~~~~~---s~~~v~~~L~~L~~KGlI~i~~   85 (135)
T 2v79_A           50 YFPTPNQLQEGMSI---SVEECTNRLRMFIQKGFLFIEE   85 (135)
T ss_dssp             CSCCHHHHHTTSSS---CHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence            46899999999999   7899999999999999999853

>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}

Probab=86.64  E-value=0.77  Score=33.83  Aligned_cols=53  Identities=13%  Similarity=0.105  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      ..|+..|.+.+|+   +.+-++..+.+|...|+-......+.|+|   .|.|+++.=|.
T Consensus        33 ~~nvp~L~~~TGm---PRRTiQd~I~aL~elgI~~~FvQ~G~R~n---~GyY~I~dWG~   85 (117)
T 3ke2_A           33 RHNLLSLGKLTGM---PRRTLQDAIASFADIGIEVEFVQDGERHN---AGYYRIRTWGP   85 (117)
T ss_dssp             CCCHHHHHHHHCC---CHHHHHHHHHTGGGGTCEEEEECCTTCCS---CCEEEEEECTT
T ss_pred             CCCHHHHHHHHCC---CHhHHHHHHHHhhhCCeEEEEEeccccCC---CccEEEeecCc
Confidence            3499999999999   68999999999999999887553334444   68899886443

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=86.46  E-value=0.46  Score=43.03  Aligned_cols=74  Identities=12%  Similarity=0.201  Sum_probs=49.7

Q ss_pred             HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      .++++..-+..|++.|. + +++|..|||+.+|+   ....+.++++.|...|++.+.+... ...+.-...|++++...
T Consensus        14 ~~~~~~~~~~~il~~l~-~-~~~sr~~la~~~gl---s~~tv~~~v~~L~~~gli~~~~~~~-~~~GR~~~~l~~~~~~~   87 (380)
T 2hoe_A           14 PKSVRAENISRILKRIM-K-SPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEKDSP-KGVGRPTKSLKISPNCA   87 (380)
T ss_dssp             --------CCCSHHHHH-H-SCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEECCC-----CCCEEEEECGGGC
T ss_pred             chhHHHHHHHHHHHHHH-c-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecCCC-CCCCCCceEEEEccCCC
Confidence            45667777888999998 5 79999999999999   5789999999999999999875311 01111122477777553

>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}

Probab=85.72  E-value=0.47  Score=35.41  Aligned_cols=70  Identities=20%  Similarity=0.337  Sum_probs=48.2

Q ss_pred             HhCCcccccccCCCCCCHHHHHHHcC------CCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127           36 VELSIPDIINKHGKPTTLNDLVSALT------INPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL  109 (307)
Q Consensus        36 ~~lglfd~L~~~~~~~t~~eLA~~~g------~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~  109 (307)
                      +++-|+..|..  +|.+.-+|++.+.      +   ++..+.+.|+.|...|+++......  .++...-.|++|+.|+.
T Consensus        15 l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i---~~gtly~~L~~Le~~GlI~~~~~~~--~~~~~rk~Y~lT~~G~~   87 (117)
T 3elk_A           15 ITLYILKELVK--RPMHGYELQKSMFETTGQAL---PQGSIYILLKTMKERGFVISESSVN--EKGQQLTVYHITDAGKK   87 (117)
T ss_dssp             HHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCC---CTTHHHHHHHHHHHHTSEEEEEEEC---CCCEEEEEEECHHHHH
T ss_pred             HHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCC---CcchHHHHHHHHHHCCCEEEEeeec--CCCCCceEEEECHHHHH
Confidence            34444455554  7888888888876      6   5689999999999999999764200  01111236999999995


Q ss_pred             hhc
Q 037127          110 LLK  112 (307)
Q Consensus       110 l~~  112 (307)
                      ...
T Consensus        88 ~l~   90 (117)
T 3elk_A           88 FLC   90 (117)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28

Probab=85.51  E-value=0.43  Score=40.74  Aligned_cols=64  Identities=8%  Similarity=0.200  Sum_probs=49.3

Q ss_pred             CCcccccccCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           38 LSIPDIINKHG-KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        38 lglfd~L~~~~-~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      +.++..|.+.+ ++.|..+||+.+++   +...+.++++-|...|++.+...       ..+.   ...+|+.|+.+.
T Consensus        37 ~~vL~~L~~~~~~~~~~~el~~~l~~---~~~t~t~~l~rLe~~G~i~R~~~-------~~DrR~~~i~LT~~G~~~~  104 (250)
T 1p4x_A           37 FILLTYLFHQQENTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRS-------KIDERNTYISISEEQREKI  104 (250)
T ss_dssp             HHHHHHHHSCSCSEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEEC-------SSSTTSEEEECCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCC-------CCCCCeEEEEECHHHHHHH
Confidence            34455565432 57999999999999   68999999999999999998863       1233   478999988654

>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8

Probab=85.24  E-value=0.17  Score=45.45  Aligned_cols=61  Identities=16%  Similarity=0.194  Sum_probs=0.0

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      +..++..|... +++|..|||+.+++   ++..++|.|+.|...|+++...           ....+|+.|+.+..
T Consensus        22 ~~~iL~~l~~~-~~~t~~eLa~~l~v---s~~Tv~r~l~~Le~~Glv~~~~-----------~gi~LT~~G~~~~~   82 (345)
T 2o0m_A           22 RFQILRNIYWM-QPIGRRSLSETMGI---TERVLRTETDVLKQLNLIEPSK-----------SGMTLTERGLEVYQ   82 (345)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe-----------cceEEcHHHHHHHH
Confidence            56677777765 78999999999999   6799999999999999998553           45888888886654

>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}

Probab=85.15  E-value=0.82  Score=34.09  Aligned_cols=64  Identities=19%  Similarity=0.233  Sum_probs=45.5

Q ss_pred             ccccccCCCCCCHHHHHHHc------CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           41 PDIINKHGKPTTLNDLVSAL------TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        41 fd~L~~~~~~~t~~eLA~~~------g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +..|..  +|.+--+|++.+      ++   ++..+...|+.|...|+++......  .++...-.|++|+.|+...
T Consensus        17 L~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~--~~g~~rk~Y~LT~~G~~~l   86 (117)
T 4esf_A           17 LEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKPS--DMGPPRKFYSLNEAGRQEL   86 (117)
T ss_dssp             HHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC-------CEEEEEECHHHHHHH
T ss_pred             HHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeecC--CCCCCceEEEECHHHHHHH
Confidence            334444  789999999887      56   6899999999999999999874210  0011123599999999554

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=84.46  E-value=2.3  Score=36.36  Aligned_cols=95  Identities=18%  Similarity=0.149  Sum_probs=63.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHH-------CCCCeEEEecc----hHH------------------------HHhc-----
Q 037127          196 GLNSLVDVGGATGTVAKAIAKA-------FPNLECTDFDL----PHV------------------------VNGL-----  235 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~Dl----~~~------------------------~~~a-----  235 (307)
                      -+..|+++|+-.|..+..+++.       .++-+++++|.    |+.                        ++..     
T Consensus        69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            3568999999999988886643       45678999994    321                        1110     


Q ss_pred             --hh---cCCCeEEEecCCCCC-------CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          236 --ES---DLANLKYVGGDMFEA-------IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       236 --~~---~~~rv~~~~~d~~~~-------~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                        +.   ..++|+++.|++.+.       .|  .+|++++--=   + -+.....+..+...|.|   ||.|++=|
T Consensus       149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D---~-Y~~t~~~le~~~p~l~~---GGvIv~DD  217 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD---L-YEPTKAVLEAIRPYLTK---GSIVAFDE  217 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC---C-HHHHHHHHHHHGGGEEE---EEEEEESS
T ss_pred             hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc---c-cchHHHHHHHHHHHhCC---CcEEEEcC
Confidence              01   248899999999762       23  3788777652   2 12345788999999998   55554444

>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}

Probab=84.32  E-value=0.84  Score=34.15  Aligned_cols=55  Identities=11%  Similarity=0.155  Sum_probs=43.2

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA  106 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~  106 (307)
                      ...|...+..  .|.++.+||+.+++   ++..+..+|+.|...|.+.+-.          ++.|-++..
T Consensus         9 ~~~i~~~~~~--~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~----------~~~~~~~~~   63 (121)
T 2pjp_A            9 WQKAEPLFGD--EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV----------KDRYYRNDR   63 (121)
T ss_dssp             HHHHGGGCSS--SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE----------TTEEEEHHH
T ss_pred             HHHHHHHHHh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec----------CCceECHHH
Confidence            3345556643  57799999999999   6889999999999999999886          466666543

>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A

Probab=84.27  E-value=0.28  Score=36.64  Aligned_cols=49  Identities=14%  Similarity=0.230  Sum_probs=37.6

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCC-CCcccHHHHHHHHHhCCceeeec
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINP-SKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~-~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +.|+..|... ++.|..+||+.++.+. -+...+.++|+-|...|++.+..
T Consensus        13 ~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~   62 (126)
T 1sd4_A           13 WDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK   62 (126)
T ss_dssp             HHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence            3344455544 6899999999997410 04789999999999999999986

>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66

Probab=83.89  E-value=1.2  Score=32.29  Aligned_cols=44  Identities=11%  Similarity=0.228  Sum_probs=35.9

Q ss_pred             cccccccCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           40 IPDIINKHGKPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        40 lfd~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |+..|.. |+.+ |..+||+.+|+   ....+++-|+.|...|+++...
T Consensus        33 I~~~l~~-g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~   77 (102)
T 2b0l_A           33 IFEELDG-NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS   77 (102)
T ss_dssp             HTTSSBT-TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHhhhcC-CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence            3344443 3456 99999999999   6789999999999999999875

>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A

Probab=83.85  E-value=1.4  Score=37.06  Aligned_cols=51  Identities=16%  Similarity=0.145  Sum_probs=42.5

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN  105 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~  105 (307)
                      |.-.|..  ++.|+++||+.+|+   +++-+...|.-|...|++++..          ++++.+..
T Consensus       170 l~~~l~~--~~~t~~~la~~~~l---~~~~V~~~l~~L~~~~~v~~~~----------~~~~~~~~  220 (232)
T 2qlz_A          170 LHYLLLN--GRATVEELSDRLNL---KEREVREKISEMARFVPVKIIN----------DNTVVLDE  220 (232)
T ss_dssp             HHHHHHS--SEEEHHHHHHHHTC---CHHHHHHHHHHHTTTSCEEEET----------TTEEEECH
T ss_pred             HHHHHhc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhcCCeEEec----------CCeEEecH
Confidence            4444554  79999999999999   6799999999999999998775          57777664

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=83.80  E-value=8.7  Score=28.85  Aligned_cols=88  Identities=18%  Similarity=0.137  Sum_probs=52.6

Q ss_pred             CCeEEEecCCc-hHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC-------CCCccEEEechhhcc
Q 037127          197 LNSLVDVGGAT-GTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA-------IPPADAVVLKWILHD  267 (307)
Q Consensus       197 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~-------~p~~D~i~~~~vLh~  267 (307)
                      ..+|+=+|+|. |......+... +.+++++|. ++.++.+++  ..+.++.+|..++       ...+|++++.--   
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~--~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~---   80 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRE--RGVRAVLGNAANEEIMQLAHLECAKWLILTIP---   80 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH--TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS---
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH--cCCCEEECCCCCHHHHHhcCcccCCEEEEECC---
Confidence            35788889974 54444444443 568999998 777776663  4677888998763       124787765421   


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                       ++.++..+.. ..+.+.|   +.+++.
T Consensus        81 -~~~~n~~~~~-~a~~~~~---~~~iia  103 (140)
T 3fwz_A           81 -NGYEAGEIVA-SARAKNP---DIEIIA  103 (140)
T ss_dssp             -CHHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred             -ChHHHHHHHH-HHHHHCC---CCeEEE
Confidence             2233333444 3444555   455553

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=83.57  E-value=2.5  Score=37.48  Aligned_cols=103  Identities=11%  Similarity=0.046  Sum_probs=65.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCe-E-EEecc-hHHHHhchh-cCCCeEEEecCCCCC----CC--CccEEEechhh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLE-C-TDFDL-PHVVNGLES-DLANLKYVGGDMFEA----IP--PADAVVLKWIL  265 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~-~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~~----~p--~~D~i~~~~vL  265 (307)
                      +.-+++|+=||.|.+...+.+..-..+ + .++|. +..++..+. ....  ++.+|+.+-    ++  .+|+++.+-..
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpPC   86 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPPC   86 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCCc
Confidence            456899999999999999988742234 4 58999 555554443 2222  567888772    33  58999877665


Q ss_pred             ccC-----------ChhHHHHHHHHHHH-hccCCCCCcEEEEEeeecC
Q 037127          266 HDW-----------NDEECVKILKKCKE-AITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       266 h~~-----------~~~~~~~~L~~~~~-~L~p~~~gg~lli~e~~~~  301 (307)
                      -.|           .|+. -.++..+.+ .++.-...-+++++|.|..
T Consensus        87 Q~fs~S~ag~~~~~~d~r-~~L~~~~~r~~i~~~~~~P~~~~lENV~g  133 (327)
T 3qv2_A           87 QPYNNSIMSKHKDINDPR-AKSVLHLYRDILPYLINKPKHIFIENVPL  133 (327)
T ss_dssp             TTCSHHHHTTTCTTTCGG-GHHHHHHHHTTGGGCSSCCSEEEEEECGG
T ss_pred             cCcccccCCCCCCCcccc-chhHHHHHHHHHHHhccCCCEEEEEchhh
Confidence            555           2322 346666666 5542000148999998753

>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1

Probab=82.74  E-value=0.65  Score=43.27  Aligned_cols=65  Identities=11%  Similarity=0.151  Sum_probs=49.8

Q ss_pred             hCCcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           37 ELSIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++++|..|||+++++   +...+.|+++-|...|++++...       ..++   ...+|+.|+.+.
T Consensus       406 q~~vl~~l~~~~~~~~~~~~l~~~~~~---~~~~~t~~~~~le~~g~v~r~~~-------~~D~R~~~i~lT~~g~~~~  474 (487)
T 1hsj_A          406 EIYILNHILRSESNEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRS-------LQDERTVIVYVTDTQKANI  474 (487)
T ss_dssp             HHHHHHHHHTCSCSEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEEC-------CSSSSCCEEECCSSHHHHH
T ss_pred             HHHHHHHHHhCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCC-------CCCCCeEEEEECHHHHHHH
Confidence            34455566543 157999999999999   78999999999999999999763       1233   478888887654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=82.70  E-value=7.4  Score=34.06  Aligned_cols=84  Identities=15%  Similarity=0.107  Sum_probs=51.4

Q ss_pred             CCeEEEecCCc-h-HHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCCCccEEEechhhccCChhH
Q 037127          197 LNSLVDVGGAT-G-TVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIPPADAVVLKWILHDWNDEE  272 (307)
Q Consensus       197 ~~~vlDvGgG~-G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p~~D~i~~~~vLh~~~~~~  272 (307)
                      ..+|.=||+|. | .++..|.+.....+++++|. ++.++.+.+.. -+.-...|..+ ...++|+|++.-     +...
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G-~~~~~~~~~~~~~~~~aDvVilav-----p~~~  106 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-IIDEGTTSIAKVEDFSPDFVMLSS-----PVRT  106 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-SCSEEESCTTGGGGGCCSEEEECS-----CGGG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC-CcchhcCCHHHHhhccCCEEEEeC-----CHHH
Confidence            36788899883 3 44555555533238999998 66666665321 11111233333 344689998764     3344


Q ss_pred             HHHHHHHHHHhccC
Q 037127          273 CVKILKKCKEAITS  286 (307)
Q Consensus       273 ~~~~L~~~~~~L~p  286 (307)
                      ...+++++...+++
T Consensus       107 ~~~vl~~l~~~l~~  120 (314)
T 3ggo_A          107 FREIAKKLSYILSE  120 (314)
T ss_dssp             HHHHHHHHHHHSCT
T ss_pred             HHHHHHHHhhccCC
Confidence            56788999999987

>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61

Probab=82.30  E-value=0.85  Score=36.61  Aligned_cols=65  Identities=15%  Similarity=0.234  Sum_probs=45.9

Q ss_pred             CCcccccccCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127           38 LSIPDIINKHGKPTTLNDLVSAL--------TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL  109 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~--------g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~  109 (307)
                      +-|+..|..  +|.+.-+|++.+        ++   +...+.+.|+.|...|+++......  .++...-.|++|+.|+.
T Consensus         5 ~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~---s~~~ly~~L~~Le~~GlI~~~~~~~--~~~~~r~~Y~lT~~G~~   77 (179)
T 1yg2_A            5 HVILTVLST--RDATGYDITKEFSASIGYFWKA---SHQQVYRELNKMGEQGLVTCVLEPQ--EGKPDRKVYSITQAGRS   77 (179)
T ss_dssp             HHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCC---CHHHHHHHHHHHHHTTSEEECCC-----------CEEECHHHHH
T ss_pred             HHHHHHHhc--CCCCHHHHHHHHHHHhCCccCC---CcCcHHHHHHHHHHCCCeEEEeecC--CCCCCceEEEeChHHHH
Confidence            335555665  799999999998        45   6799999999999999999764210  00112336999999983

>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}

Probab=82.08  E-value=0.63  Score=36.33  Aligned_cols=48  Identities=19%  Similarity=0.384  Sum_probs=38.9

Q ss_pred             hCCcccccccCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           37 ELSIPDIINKHG-KPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        37 ~lglfd~L~~~~-~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +.-|++.|...+ ++.|++||.+.+     ++   +..-+.|.|+.|...|++.+..
T Consensus        19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~   72 (150)
T 2w57_A           19 RLKILEVLQQPECQHISAEELYKKLIDLGEEI---GLATVYRVLNQFDDAGIVTRHH   72 (150)
T ss_dssp             HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence            344666665444 689999999998     55   6788999999999999999875

>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*

Probab=82.01  E-value=1.4  Score=32.59  Aligned_cols=68  Identities=9%  Similarity=0.242  Sum_probs=46.8

Q ss_pred             hCCcccccccCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSAL--------TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~--------g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      ++=|+..|..  +|.+--+|++.+        ++   ++..+.+.|+.|...|+++......  .++...-.|++|+.|+
T Consensus        14 ~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i---~~gtly~~L~rLe~~GlI~~~~~~~--~~~~~rk~Y~LT~~G~   86 (116)
T 3f8b_A           14 NVILLNVLKQ--GDNYVYGIIKQVKEASNGEMEL---NEATLYTIFKRLEKDGIISSYWGDE--SQGGRRKYYRLTEIGH   86 (116)
T ss_dssp             HHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCC---CHHHHHHHHHHHHHTTSEEEEEEC------CCEEEEEECHHHH
T ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHCCCEEEEeecc--CCCCCceEEEECHHHH
Confidence            3334445554  788888998887        45   6899999999999999999864100  0011123599999998


Q ss_pred             hhh
Q 037127          109 LLL  111 (307)
Q Consensus       109 ~l~  111 (307)
                      ...
T Consensus        87 ~~l   89 (116)
T 3f8b_A           87 ENM   89 (116)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=81.70  E-value=0.82  Score=41.66  Aligned_cols=46  Identities=9%  Similarity=0.211  Sum_probs=39.2

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ..|++.|..+ +++|..|||+.+|+   ....+.++++.|...|++.+.+
T Consensus        19 ~~il~~l~~~-~~~sr~~la~~~~l---s~~tv~~~v~~L~~~g~i~~~~   64 (406)
T 1z6r_A           19 GAVYRLIDQL-GPVSRIDLSRLAQL---APASITKIVHEMLEAHLVQELE   64 (406)
T ss_dssp             HHHHHHHHSS-CSCCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEC-
T ss_pred             HHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEeec
Confidence            3466777765 79999999999999   6789999999999999999865

>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0

Probab=81.66  E-value=0.65  Score=33.97  Aligned_cols=64  Identities=22%  Similarity=0.382  Sum_probs=43.8

Q ss_pred             cccccccCCCCCCHHHHHHHc----CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           40 IPDIINKHGKPTTLNDLVSAL----TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~----g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      |+..|..  +|.+--+|++.+    ++   ++..+.+.|+.|...|+++......   .+...-.|++|+.|+...
T Consensus        14 IL~~L~~--~~~~gyel~~~l~~~~~i---~~~tly~~L~~Le~~GlI~~~~~~~---~~r~r~~y~LT~~G~~~l   81 (108)
T 3l7w_A           14 ILAIVSK--HDSYGYDISQTIKLIASI---KESTLYPILKKLEKAGYLSTYTQEH---QGRRRKYYHLTDSGEKHL   81 (108)
T ss_dssp             HHHHHHH--SCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEEEEE---TTEEEEEEEECHHHHHHH
T ss_pred             HHHHHHc--CCCcHHHHHHHHHHHhCC---CcChHHHHHHHHHHCCCeEEEeecC---CCCcceEEEECHHHHHHH
Confidence            3444444  577777777664    67   6799999999999999999875210   000012499999998654

>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}

Probab=81.36  E-value=1.7  Score=31.97  Aligned_cols=50  Identities=10%  Similarity=0.140  Sum_probs=38.8

Q ss_pred             HHHHHHhCCcccccccCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           31 SLKCAVELSIPDIINKHGKPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        31 ~L~~a~~lglfd~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .|...+..|-+.   . |..+ |..+||+.+|+   +..-+++.|..|...|+++..+
T Consensus        17 ~i~~~I~~g~~~---~-G~~lPs~~~La~~~~v---Sr~tvr~al~~L~~~Gli~~~~   67 (113)
T 3tqn_A           17 KIVEAIIDGSYV---E-GEMIPSIRKISTEYQI---NPLTVSKAYQSLLDDNVIEKRR   67 (113)
T ss_dssp             HHHHHHHHTSSC---T-TCEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHcCCCC---C-CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence            344444555543   2 3566 89999999999   5788999999999999999886

>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85

Probab=81.30  E-value=0.67  Score=32.98  Aligned_cols=45  Identities=11%  Similarity=0.113  Sum_probs=36.6

Q ss_pred             cccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           40 IPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        40 lfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |+..|... +..++..+||+++++   +...+.++|+.|...|++.+..
T Consensus        25 Vl~~I~~~g~~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~   70 (91)
T 2dk5_A           25 VYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK   70 (91)
T ss_dssp             HHHHHHHHCTTCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHcCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence            44455532 147999999999999   6899999999999999999664

>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61

Probab=81.27  E-value=0.48  Score=36.84  Aligned_cols=70  Identities=13%  Similarity=0.159  Sum_probs=49.0

Q ss_pred             HHhCCcccccccCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127           35 AVELSIPDIINKHGKPTTLNDLVSAL--------TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA  106 (307)
Q Consensus        35 a~~lglfd~L~~~~~~~t~~eLA~~~--------g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~  106 (307)
                      .+++-|+..|..  +|.+.-+|++.+        ++   ++..+.+.|+-|...|+++......  .++...-.|++|+.
T Consensus        41 ~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~i---s~gtLy~~L~rLE~~GlI~~~~~~~--~~~~~rk~Y~LT~~  113 (145)
T 1xma_A           41 YVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVI---KETTLYSAFARLEKNGYIKSYYGEE--TQGKRRTYYRITPE  113 (145)
T ss_dssp             THHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCC---CHHHHHHHHHHHHHTTSEEEEEEEE--C--CEEEEEEECHH
T ss_pred             cHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCc---ChhHHHHHHHHHHHCCCEEEEEecc--CCCCCeEEEEECHH
Confidence            345555556654  689988988887        46   6799999999999999998874210  00011235999999


Q ss_pred             cchhh
Q 037127          107 SKLLL  111 (307)
Q Consensus       107 s~~l~  111 (307)
                      |+.+.
T Consensus       114 G~~~l  118 (145)
T 1xma_A          114 GIKYY  118 (145)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98654

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=81.17  E-value=1.9  Score=35.94  Aligned_cols=36  Identities=11%  Similarity=0.194  Sum_probs=33.3

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      -+.|-++||+.+|+   ....+.|+|..|...|+++...
T Consensus       176 ~~~t~~~iA~~lG~---sr~tvsR~l~~L~~~g~I~~~~  211 (250)
T 3e6c_C          176 MPLSQKSIGEITGV---HHVTVSRVLASLKRENILDKKK  211 (250)
T ss_dssp             CCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECS
T ss_pred             CCCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCeEeCC
Confidence            47899999999999   6799999999999999999874

>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*

Probab=80.45  E-value=1.3  Score=39.11  Aligned_cols=54  Identities=15%  Similarity=0.227  Sum_probs=42.8

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN  105 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~  105 (307)
                      .|++.|.. ++++|.++||+.+++   .+..++|-++.|...|+......         ...|++.+
T Consensus         9 ~Il~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~l~~L~~~G~~i~~~~---------g~GY~l~~   62 (321)
T 1bia_A            9 KLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP---------GKGYSLPE   62 (321)
T ss_dssp             HHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET---------TTEEECSS
T ss_pred             HHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCcEEEec---------CCCcEEee
Confidence            35556654 378999999999999   68999999999999999876542         34688764

>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}

Probab=80.38  E-value=1.1  Score=40.67  Aligned_cols=52  Identities=17%  Similarity=0.231  Sum_probs=44.0

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT  104 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t  104 (307)
                      ..|+++|..  +|.++++|++++|+   +...+...|-.|.-.|++...+          +++|+++
T Consensus       331 ~~vl~~l~~--~~~~~D~l~~~~gl---~~~~v~~~L~~LEl~G~v~~~~----------Gg~~~~~  382 (382)
T 3maj_A          331 TRILALLGP--SPVGIDDLIRLSGI---SPAVVRTILLELELAGRLERHG----------GSLVSLS  382 (382)
T ss_dssp             HHHHHHCCS--SCEEHHHHHHHHCC---CHHHHHHHHHHHHHTTCCEECT----------TSEEEC-
T ss_pred             HHHHHhhCC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEeCC----------CceEecC
Confidence            357888875  79999999999999   6788999999999999999886          5778764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	307
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	1e-62
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	8e-57
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	7e-44
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	1e-35
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	5e-27
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	3e-25
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	1e-23
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	2e-20
d1qzza1	92	a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R	7e-17
d1tw3a1	85	a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer	1e-15

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  196 bits (499), Expect = 1e-62
 Identities = 93/192 (48%), Positives = 128/192 (66%), Gaps = 2/192 (1%)

Query: 116 LSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAM 175
           L + P+++ VLDP L   + +L  W   +D   F +  G  FW++    P+ N  FN+AM
Sbjct: 1   LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAM 60

Query: 176 ASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGL 235
           ASD++L   + +  C  VF+GL S+VDVGG TGT AK I + FP L+C  FD P VV  L
Sbjct: 61  ASDSKLIN-LALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL 119

Query: 236 ESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII 295
                NL YVGGDMF +IP ADAV+LK+ILH+W D++C++ILKKCKEA+T++ K GKV I
Sbjct: 120 SGS-NNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTI 178

Query: 296 IDMMRENKKGDD 307
           IDM+ + KK ++
Sbjct: 179 IDMVIDKKKDEN 190

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  181 bits (460), Expect = 8e-57
 Identities = 59/191 (30%), Positives = 103/191 (53%), Gaps = 5/191 (2%)

Query: 117 SVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMA 176
            +      +  P LL  W+        +D   F  VHG + +E+ G + K+N  FN++M 
Sbjct: 3   YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 62

Query: 177 SDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLE 236
                  + ++      FEG+++LVDVGG +G   + I   +P ++  +FDLP V+    
Sbjct: 63  DVCATEMKRMLE-IYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 121

Query: 237 SDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296
             L+ +++VGGDMF ++P  DA++LK + H+W+DE+C++ L  C +A+   S  GKVII+
Sbjct: 122 -PLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVIIV 177

Query: 297 DMMRENKKGDD 307
           + +   +    
Sbjct: 178 EFILPEEPNTS 188

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  148 bits (373), Expect = 7e-44
 Identities = 70/188 (37%), Positives = 104/188 (55%), Gaps = 3/188 (1%)

Query: 115 PLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEA 174
            +S++ L     D +L+  W  L          PF+  +G + +EY G +P+ N  FN+ 
Sbjct: 2   GVSISALNLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKG 60

Query: 175 MASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNG 234
           M+  + +  + ++      FEGL SLVDVGG TG V   I   +P ++  +FDLPHV+  
Sbjct: 61  MSDHSTITMKKILE-TYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED 119

Query: 235 LESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVI 294
             S    +++VGGDMF +IP ADAV +KWI HDW+DE C+K LK C EA+  N K+    
Sbjct: 120 APSY-PGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE 178

Query: 295 IIDMMREN 302
            I  +  +
Sbjct: 179 CILPVAPD 186

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  121 bits (306), Expect = 1e-35
 Identities = 51/105 (48%), Positives = 70/105 (66%), Gaps = 8/105 (7%)

Query: 10  TELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRC 69
           +E+ +AQA ++ HI+ FI+SMSLK AVE++IP+II  HGKP +L++LVS L +  SK   
Sbjct: 4   SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN 63

Query: 70  VYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDS 114
           V RLMR L H+GFF             EE+ Y LT AS+LL++ S
Sbjct: 64  VRRLMRYLAHNGFFEII--------TKEEESYALTVASELLVRGS 100

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 99.9 bits (249), Expect = 5e-27
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 14  EAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKP---TTLNDLVSAL---TINPSKT 67
            A         N +    L  A++L++ +II K   P    + +++ S L   T +    
Sbjct: 5   SACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLP 64

Query: 68  RCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD 113
             + R++R+L         T      +   E+ Y L+   K L+ D
Sbjct: 65  NRLDRMLRLLASYSVLTSTTRTIE--DGGAERVYGLSMVGKYLVPD 108

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 95.3 bits (237), Expect = 3e-25
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 14  EAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTI---NPSKTRCV 70
           EA           +  M LK A+EL + +II K G    ++ +  A  +   NP     +
Sbjct: 6   EANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVML 65

Query: 71  YRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD 113
            R++R+L                +   ++ Y L   +K L+K+
Sbjct: 66  DRMLRLLACYIILTCSVRTQQ--DGKVQRLYGLATVAKYLVKN 106

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 95.0 bits (235), Expect = 1e-23
 Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 13/182 (7%)

Query: 133 PWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKN 192
            +  L    ++  PA +   +G+ FWE    +  + + F+  M+ D  LA          
Sbjct: 21  AFTGLLDVVRTGRPA-YAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD- 78

Query: 193 VFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEA 252
            +  +  ++DVGG  G +  AIA   P+L  T  +L           A+           
Sbjct: 79  -WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAE 137

Query: 253 -------IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG 305
                     AD V+L ++L +W+DE+ + IL+ C  A+      G+++++D       G
Sbjct: 138 GDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALE---PGGRLLVLDRADVEGDG 194

Query: 306 DD 307
            D
Sbjct: 195 AD 196

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 86.6 bits (213), Expect = 2e-20
 Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 25/200 (12%)

Query: 128 PILLSPWLKLSTWFQSDDPA-------------PFDMVHGKSFWEYAGDEPKINNFFNEA 174
           P     W  L+      D +              ++ ++GK F+E     P +   F+  
Sbjct: 1   PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSL 60

Query: 175 MASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNG 234
           +A D  +A           +  +  ++DVGG  G  A AIA+  P++  T  ++   V+ 
Sbjct: 61  LACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDT 118

Query: 235 LESDLANLKYVGGDMFEAIPPAD-------AVVLKWILHDWNDEECVKILKKCKEAITSN 287
             S L +               +       A++L ++L +W D + V+IL +C EA+   
Sbjct: 119 ARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE-- 176

Query: 288 SKIGKVIIIDMMRENKKGDD 307
              G+++I +    ++   +
Sbjct: 177 -PGGRILIHERDDLHENSFN 195

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 72.5 bits (178), Expect = 7e-17
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 13/97 (13%)

Query: 14  EAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRL 73
           +    +  ++ N +  M+L+ A  L + D +       TL  L      +P   + + RL
Sbjct: 6   QDLDVLLKNLGNLVTPMALRVAATLRLVDHL--LAGADTLAGLADRTDTHP---QALSRL 60

Query: 74  MRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL 110
           +R L   G               + +    T    LL
Sbjct: 61  VRHLTVVGVLEGGE--------KQGRPLRPTRLGMLL 89

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 68.7 bits (168), Expect = 1e-15
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 15/92 (16%)

Query: 22  HIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSG 81
            + +    M ++ A  L + D I       T+  L +     P       RL+R L+  G
Sbjct: 8   RLGSLHTPMVVRTAATLRLVDHI--LAGARTVKALAARTDTRPEALL---RLIRHLVAIG 62

Query: 82  FFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD 113
              +          D    +V T   +LL  D
Sbjct: 63  LLEE----------DAPGEFVPTEVGELLADD 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	100.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	100.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	100.0
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	100.0
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.97
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.78
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.71
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.7
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.67
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.66
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.64
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.64
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	99.61
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.61
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.61
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.6
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.59
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.58
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.53
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.53
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.53
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.48
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.48
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.48
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.47
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.47
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.46
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.43
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.42
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.42
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.41
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.4
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.38
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.36
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.29
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.28
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.27
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.26
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.25
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.24
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.23
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.23
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.23
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.21
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.19
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.16
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.14
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.13
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.06
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.04
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.02
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.01
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.01
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.0
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.97
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.94
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.94
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.93
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.92
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.91
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.79
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.73
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.73
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.6
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.52
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.44
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.38
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.37
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.35
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.34
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.34
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.29
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.28
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.26
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.26
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.23
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.21
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.16
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.16
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.15
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.14
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.14
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.08
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.05
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.0
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.98
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.94
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	97.91
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.89
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.85
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.84
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.83
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.46
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.38
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.32
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.25
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.22
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.16
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.0
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.95
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.93
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	96.71
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	96.6
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	96.56
d1r1ta_	98	SmtB repressor {Cyanobacteria (Synechococcus), pcc	96.54
d1r1ua_	94	Metal-sensing transcriptional repressor CzrA {Stap	96.45
d1u2wa1	108	Cadmium efflux system accessory protein CadC {Stap	96.24
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	96.03
d1s3ja_	143	Putative transcriptional regulator YusO {Bacillus	95.97
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.89
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	95.76
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	95.72
d1lnwa_	141	MexR repressor {Pseudomonas aeruginosa [TaxId: 287	95.65
d1ulya_	190	Hypothetical protein PH1932 {Pyrococcus horikoshii	95.63
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	95.63
d2hoea1	62	N-acetylglucosamine kinase {Thermotoga maritima [T	95.42
d2p4wa1	194	Transcriptional regulatory protein PF1790 {Pyrococ	95.37
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.36
d2hr3a1	145	Probable transcriptional regulator PA3067 {Pseudom	95.16
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.14
d3broa1	135	Transcriptional regulator OEOE1854 {Oenococcus oen	95.11
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	95.05
d1xd7a_	127	Hypothetical protein ywnA {Bacillus subtilis [TaxI	94.91
d2etha1	140	Putative transcriptional regulator TM0816 {Thermot	94.81
d2bv6a1	136	Transcriptional regulator MgrA {Staphylococcus aur	94.81
d1r7ja_	90	Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu	94.63
d2fbha1	137	Transcriptional regulator PA3341 {Pseudomonas aeru	94.62
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	94.56
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	94.48
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	94.34
d2hzta1	95	Putative transcriptional regulator YtcD {Bacillus	94.26
d2a61a1	139	Transcriptional regulator TM0710 {Thermotoga marit	94.23
d1ylfa1	138	Hypothetical protein BC1842 {Bacillus cereus [TaxI	94.15
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	93.92
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	93.84
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	93.73
d2obpa1	81	Putative DNA-binding protein ReutB4095 {Ralstonia	93.71
d3deua1	140	Transcriptional regulator SlyA {Salmonella typhimu	93.66
d1ku9a_	151	DNA-binding protein Mj223 {Archaeon Methanococcus	93.61
d1lj9a_	144	Transcriptional regulator SlyA {Enterococcus faeca	93.49
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.35
d2fbia1	136	Probable transcriptional regulator PA4135 {Pseudom	92.81
d2isya1	63	Iron-dependent regulator IdeR {Mycobacterium tuber	92.79
d1jhfa1	71	LexA repressor, N-terminal DNA-binding domain {Esc	92.63
d1z91a1	137	Organic hydroperoxide resistance transcriptional r	92.55
d1jgsa_	138	Multiple antibiotic resistance repressor, MarR {Es	92.53
d1yyva1	114	Putative transcriptional regulator YtfH {Salmonell	92.5
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.5
d1hsja1	115	Staphylococcal accessory regulator A homolog, SarR	92.48
d2fswa1	102	Hypothetical protein PG0823 {Porphyromonas gingiva	92.37
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.37
d1z7ua1	108	Hypothetical protein EF0647 {Enterococcus faecalis	91.9
d1p4xa1	125	Staphylococcal accessory regulator A homolog, SarS	91.86
d2ev0a1	61	Manganese transport regulator MntR {Bacillus subti	91.85
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	91.78
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.72
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	91.48
d2frha1	115	Pleiotropic regulator of virulence genes, SarA {St	91.47
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	91.37
d2f2ea1	142	Hypothetical protein PA1607 {Pseudomonas aeruginos	91.25
d2gxba1	59	Z-alpha domain of dsRNA-specific adenosine deamina	91.19
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	91.1
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	90.93
d2fxaa1	162	Protease production regulatory protein Hpr {Bacill	90.88
d1p4xa2	125	Staphylococcal accessory regulator A homolog, SarS	90.74
d1zyba1	73	Probable transcription regulator BT4300, C-termina	90.71
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.25
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.1
d1j75a_	57	Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}	89.36
d2fbka1	172	Transcriptional regulator DR1159 {Deinococcus radi	89.16
d2hs5a1	69	Putative transcriptional regulator RHA1_ro03477 {R	88.69
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	88.42
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.35
d1q1ha_	88	Transcription factor E/IIe-alpha, N-terminal domai	87.83
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	87.81
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	87.64
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	87.61
d2zcwa1	82	Transcriptional regulator TTHA1359, C-terminal dom	87.37
d2gaua1	81	Transcriptional regulator PG0396, C-terminal domai	86.91
d1stza1	87	Heat-inducible transcription repressor HrcA, N-ter	86.85
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	86.68
d1i5za1	69	Catabolite gene activator protein (CAP), C-termina	86.58
d2p8ta1	69	Hypothetical protein PH0730 {Pyrococcus horikoshii	86.47
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	86.38
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	85.99
d3bwga1	78	Transcriptional regulator YydK {Bacillus subtilis	85.81
d1ft9a1	80	CO-sensing protein CooA, C-terminal domain {Rhodos	85.04
d1xmka1	73	Z-alpha domain of dsRNA-specific adenosine deamina	84.78
d1hw1a1	74	Fatty acid responsive transcription factor FadR, N	84.23
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	84.03
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	83.97
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	83.76
d1sfua_	70	34L {Yaba-like disease virus, YLDV [TaxId: 132475]	83.7
d1s6la1	60	Alkylmercury lyase MerB {Escherichia coli [TaxId:	83.41
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.2
d3e5ua1	80	Chlorophenol reduction protein CprK {Desulfitobact	82.96
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	82.31
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	81.98

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.1e-37  Score=269.98  Aligned_cols=184  Identities=32%  Similarity=0.660  Sum_probs=160.8

Q ss_pred             ChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccC
Q 037127          117 SVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEG  196 (307)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~  196 (307)
                      |+++++.++++|.++..|.+|+++++++.+++|+.++|.++|+|+.++|+..+.|+++|...+....+.+++.++ .+++
T Consensus         3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~-~f~~   81 (244)
T d1fp1d2           3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEG   81 (244)
T ss_dssp             CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTT
T ss_pred             cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccC
Confidence            788899999899999999999999999887899999999999999999999999999999998888888999887 3688


Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCCCCccEEEechhhccCChhHHHHH
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKI  276 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~  276 (307)
                      ..+|||||||+|.++..+++++|+++++++|+|++++.+. ..+||+++.+|+++++|++|+|+++++||+|++++++++
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~-~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~i  160 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP-PLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEF  160 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHH
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccC-CCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHH
Confidence            8999999999999999999999999999999999998877 789999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127          277 LKKCKEAITSNSKIGKVIIIDMMRENKKG  305 (307)
Q Consensus       277 L~~~~~~L~p~~~gg~lli~e~~~~~~~~  305 (307)
                      |++++++|+|   ||+|+|+|.+++++++
T Consensus       161 L~~~~~aL~p---gg~llI~e~v~~~~~~  186 (244)
T d1fp1d2         161 LSNCHKALSP---NGKVIIVEFILPEEPN  186 (244)
T ss_dssp             HHHHHHHEEE---EEEEEEEEEEECSSCC
T ss_pred             HHHHHHHcCC---CcEEEEEEEEecCCCC
Confidence            9999999999   9999999999998765

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=5e-36  Score=259.52  Aligned_cols=188  Identities=49%  Similarity=0.925  Sum_probs=169.0

Q ss_pred             ChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccC
Q 037127          117 SVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEG  196 (307)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~  196 (307)
                      ++.+++.++.+|.++.+|..|+++++++.+++|+.++|.++|+|+.++|+..+.|+++|...+......+.. +.+.+++
T Consensus         2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~-~~~~~~~   80 (244)
T d1fp2a2           2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CDFVFDG   80 (244)
T ss_dssp             CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHT-CHHHHTT
T ss_pred             ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhh-hcccccC
Confidence            578888998899999999999999999988899999999999999999999999999999887766555443 3334788


Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCCCCccEEEechhhccCChhHHHHH
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKI  276 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~  276 (307)
                      ..+|||||||+|.++..++++||+++++++|+|++++.+. ..+||+++.+|+++++|++|+|+++++||+|++++|+++
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~-~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~i  159 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS-GSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRI  159 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHH
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCc-ccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHH
Confidence            8999999999999999999999999999999999999887 789999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCCCcEEEEEeeecCCCCCC
Q 037127          277 LKKCKEAITSNSKIGKVIIIDMMRENKKGD  306 (307)
Q Consensus       277 L~~~~~~L~p~~~gg~lli~e~~~~~~~~~  306 (307)
                      |++++++|+|++..|+++|+|.++++++.+
T Consensus       160 L~~~~~al~pgg~~~~lli~e~~~~~~~~~  189 (244)
T d1fp2a2         160 LKKCKEAVTNDGKRGKVTIIDMVIDKKKDE  189 (244)
T ss_dssp             HHHHHHHHSGGGCCCEEEEEECEECTTTSC
T ss_pred             HHHHHHHcCcccCCcEEEEEEeecCCCCCC
Confidence            999999999811128999999999987653

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.4e-35  Score=257.04  Aligned_cols=185  Identities=38%  Similarity=0.751  Sum_probs=172.0

Q ss_pred             CChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHHHhchhhhHHHHHHhcccccc
Q 037127          116 LSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFE  195 (307)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  195 (307)
                      .++.+++.+..++.+++.|.+|++++|+|+ ++|+.++|.++|+|+.++|+..+.|..+|...+......++..+++ ++
T Consensus         3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~-~~   80 (243)
T d1kyza2           3 VSISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-FE   80 (243)
T ss_dssp             CCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TS
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccc-cc
Confidence            478999988888889999999999999998 6999999999999999999999999999999888777888888873 46


Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCCCCccEEEechhhccCChhHHHH
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVK  275 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~  275 (307)
                      +.++|||||||+|.++..++++||+++++++|+|++++.++ ..+|++++.+|+++++|.+|+|++++++|+|+++++++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~-~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~  159 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP-SYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLK  159 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCC-CCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHH
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcc-cCCceEEecccccccCCCcceEEEEEEeecCCHHHHHH
Confidence            67899999999999999999999999999999999988777 78899999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCcEEEEEeeecCCCCCC
Q 037127          276 ILKKCKEAITSNSKIGKVIIIDMMRENKKGD  306 (307)
Q Consensus       276 ~L~~~~~~L~p~~~gg~lli~e~~~~~~~~~  306 (307)
                      +|++++++|+|   ||+++|+|.++++..++
T Consensus       160 iL~~~~~al~p---gg~~li~d~~~~~~~~~  187 (243)
T d1kyza2         160 FLKNCYEALPD---NGKVIVAECILPVAPDS  187 (243)
T ss_dssp             HHHHHHHHCCS---SSCEEEEECEECSSCCC
T ss_pred             HHHHHHHhcCC---CceEEEEEEEecCCCCC
Confidence            99999999999   99999999999887654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=100.00  E-value=4.2e-33  Score=243.23  Aligned_cols=183  Identities=23%  Similarity=0.405  Sum_probs=162.4

Q ss_pred             CCChHHHHHHhcCcch-hhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHHHhchhhhHHHHHHhcccc
Q 037127          115 PLSVTPLLQAVLDPIL-LSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNV  193 (307)
Q Consensus       115 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~  193 (307)
                      |.++++|+.+...... ..+|.+|.+++|+|. ++|+..+|.++|+|+.++|+..+.|.++|...+....+.+++.++  
T Consensus         2 p~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d--   78 (256)
T d1qzza2           2 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--   78 (256)
T ss_dssp             TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC--
T ss_pred             cHHHHHHHhhcCchhhhHhhHHHHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC--
Confidence            4578888766432222 246999999999998 589999999999999999999999999999988888899999998  


Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCCCCC-CccEEEechhhc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFEAIP-PADAVVLKWILH  266 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh  266 (307)
                      +++.++|||||||+|.++..+++++|+++++++|+|++++.+++      ..+|++++.+|+++++| ++|+|+++++||
T Consensus        79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh  158 (256)
T d1qzza2          79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL  158 (256)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGG
T ss_pred             CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccccc
Confidence            88889999999999999999999999999999999999988775      57899999999999887 599999999999


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      +|+++++.++|++++++|+|   ||+++|+|.+.+++
T Consensus       159 ~~~d~~~~~lL~~i~~~Lkp---gG~llI~d~~~~~~  192 (256)
T d1qzza2         159 NWSDEDALTILRGCVRALEP---GGRLLVLDRADVEG  192 (256)
T ss_dssp             GSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH---
T ss_pred             ccCcHHHHHHHHHHHhhcCC---cceeEEEEeccCCC
Confidence            99999999999999999999   99999999987654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.97  E-value=1.9e-31  Score=232.34  Aligned_cols=168  Identities=26%  Similarity=0.516  Sum_probs=155.1

Q ss_pred             hhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHH
Q 037127          131 LSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTV  210 (307)
Q Consensus       131 ~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~  210 (307)
                      ..+|.+|++++|+|+ ++|+.++|.++|+|+.++|+..+.|..+|...+....+.+++.++  +++.++|||||||+|.+
T Consensus        18 ~~~~~~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~VLDvGcG~G~~   94 (253)
T d1tw3a2          18 DISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGF   94 (253)
T ss_dssp             GGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHH
T ss_pred             cccHHHHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC--CccCCEEEEeCCCCCHH
Confidence            457899999999998 589999999999999999999999999999988888899999999  88889999999999999


Q ss_pred             HHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCCCCC-CccEEEechhhccCChhHHHHHHHHHHHh
Q 037127          211 AKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFEAIP-PADAVVLKWILHDWNDEECVKILKKCKEA  283 (307)
Q Consensus       211 ~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~  283 (307)
                      +..+++++|+++++++|+|++++.+++      ..+||+++.+|++++.| ++|+|+++++||+|+++++.++|++++++
T Consensus        95 ~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~  174 (253)
T d1tw3a2          95 AAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEA  174 (253)
T ss_dssp             HHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHh
Confidence            999999999999999999988888876      56899999999999766 59999999999999999999999999999


Q ss_pred             ccCCCCCcEEEEEeeecCCCC
Q 037127          284 ITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       284 L~p~~~gg~lli~e~~~~~~~  304 (307)
                      |+|   ||+++|.|...++++
T Consensus       175 LkP---GG~l~i~e~~~~~~~  192 (253)
T d1tw3a2         175 LEP---GGRILIHERDDLHEN  192 (253)
T ss_dssp             EEE---EEEEEEEECCBCGGG
T ss_pred             cCC---CcEEEEEeccCCCCC
Confidence            999   999999998776543

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.78  E-value=8.5e-20  Score=134.56  Aligned_cols=98  Identities=53%  Similarity=0.812  Sum_probs=87.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127            9 DTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL   88 (307)
Q Consensus         9 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~   88 (307)
                      ..+.++++..+|++++||+.+++|++|+++||||.|+++|+|+|++|||+++++++.+.+.|.|+||+|++.|+|.+..+
T Consensus         3 ~~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~   82 (101)
T d1fp2a1           3 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITK   82 (101)
T ss_dssp             STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEES
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeecC
Confidence            46788999999999999999999999999999999987678999999999999965556789999999999999987642


Q ss_pred             CCCCCCCCCCCeeecChhcchhhcCC
Q 037127           89 NSSRNNNDEEQGYVLTNASKLLLKDS  114 (307)
Q Consensus        89 ~~~~~~~~~~~~y~~t~~s~~l~~~~  114 (307)
                              ++++|++|+.|++|++++
T Consensus        83 --------~~~~Y~lt~~s~~Lv~~~  100 (101)
T d1fp2a1          83 --------EEESYALTVASELLVRGS  100 (101)
T ss_dssp             --------SSEEEEECHHHHTTSTTS
T ss_pred             --------CCCeEecCHHHHHhhcCC
Confidence                    257999999999998775

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.71  E-value=3.5e-17  Score=143.30  Aligned_cols=116  Identities=16%  Similarity=0.237  Sum_probs=97.6

Q ss_pred             hhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-C
Q 037127          181 LATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-A  252 (307)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~  252 (307)
                      .....+....+  +++..+|||||||+|.++..|++++ +.+++++|+ +.+++.+++      ..++++|+++|+.+ +
T Consensus        54 ~~~~~l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~  130 (282)
T d2o57a1          54 WLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP  130 (282)
T ss_dssp             HHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred             HHHHHHHHhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccc
Confidence            33444555445  6778999999999999999999876 579999999 888888876      46899999999988 6


Q ss_pred             CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127          253 IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK  304 (307)
Q Consensus       253 ~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~  304 (307)
                      +|  .||+|++..++|++++.  .++|++++++|+|   ||++++.++...+..
T Consensus       131 ~~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~  179 (282)
T d2o57a1         131 CEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGI  179 (282)
T ss_dssp             SCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTC
T ss_pred             ccccccchhhccchhhhccCH--HHHHHHHHHhcCC---CcEEEEEEeecCCCC
Confidence            55  49999999999999986  4899999999999   999999998877643

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.70  E-value=1.2e-16  Score=135.24  Aligned_cols=106  Identities=18%  Similarity=0.282  Sum_probs=93.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHH--CCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCCCccEEEechh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKA--FPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVVLKWI  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~i~~~~v  264 (307)
                      .+..+|||||||+|..+..+++.  .|+.+++++|+ +.|++.|++      ...++++..+|+.+ +.+.+|++++..+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~  117 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  117 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence            45679999999999999999986  47899999999 999999986      45678889999887 4557999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      +|+++.++..++|++++++|+|   ||.+++.|...+++
T Consensus       118 l~~~~~~d~~~~l~~i~~~Lkp---gG~li~~~~~~~~~  153 (225)
T d1im8a_         118 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFED  153 (225)
T ss_dssp             GGGSCGGGHHHHHHHHHHHEEE---EEEEEEEEECCCSS
T ss_pred             ccccChhhHHHHHHHHHHhCCC---Cceeeccccccccc
Confidence            9999988888999999999999   99999999887654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.67  E-value=2.1e-16  Score=133.85  Aligned_cols=109  Identities=17%  Similarity=0.320  Sum_probs=92.5

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--C
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--P  255 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~  255 (307)
                      .+++...  +.+..+|||||||+|.++..+++..  .+++++|+ +.+++.|++     ..++++|+++|+.+ +++  .
T Consensus         6 ~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~   81 (231)
T d1vl5a_           6 KLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER   81 (231)
T ss_dssp             HHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred             HHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence            3455445  6778899999999999999999885  47899999 888888875     45789999999988 655  4


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ||+|++.+++|++++.+  ++|++++++|+|   ||+++|.++..++
T Consensus        82 fD~v~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~  123 (231)
T d1vl5a_          82 FHIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLVDNSAPE  123 (231)
T ss_dssp             EEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEBCS
T ss_pred             cccccccccccccCCHH--HHHHHHHHhcCC---CcEEEEEeCCCCC
Confidence            99999999999998864  889999999999   9999999987764

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3.2e-16  Score=134.25  Aligned_cols=112  Identities=9%  Similarity=0.062  Sum_probs=95.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--  254 (307)
                      ..+.+.+.  +.+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++      ..+||+|+.+|+.+..+  
T Consensus        23 ~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~   99 (245)
T d1nkva_          23 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE   99 (245)
T ss_dssp             HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence            44555555  67788999999999999999998876 79999999 888888766      46789999999988544  


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      .||+|++..++|++++.  .++|++++++|||   ||+++|.++.....
T Consensus       100 ~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkP---GG~l~i~~~~~~~~  143 (245)
T d1nkva_         100 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQL  143 (245)
T ss_dssp             CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTC
T ss_pred             ceeEEEEEehhhccCCH--HHHHHHHHHHcCc---CcEEEEEeccccCC
Confidence            49999999999999886  4899999999999   99999998876543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.64  E-value=4.1e-16  Score=134.46  Aligned_cols=113  Identities=19%  Similarity=0.353  Sum_probs=94.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC--Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP--PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p--~~  256 (307)
                      ..+++.++  ..+..+|||||||+|.++..|+..+.+ +++++|. +.+++.|++   ...+++|+++|+.+ +.+  .|
T Consensus        83 ~~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T d1xtpa_          83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHhhCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence            44566665  566789999999999999999877654 7899999 889999987   34568999999977 333  49


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      |+|++.+++|++++++..++|++++++|+|   ||.++|.|.+...
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~Lkp---gG~iii~e~~~~~  202 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTG  202 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCC---CcEEEEEecCCCC
Confidence            999999999999999999999999999999   9999999887654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=5.9e-16  Score=131.64  Aligned_cols=109  Identities=18%  Similarity=0.395  Sum_probs=93.5

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--C
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--P  255 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~  255 (307)
                      -+++.++  +++..+|||||||+|.++..+++..  .+++++|+ +.+++.|++     ..+++.++++|+.+ +++  .
T Consensus         7 ~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~   82 (234)
T d1xxla_           7 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS   82 (234)
T ss_dssp             HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred             HHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence            3456666  7888999999999999999999986  47899999 788888876     35789999999988 555  4


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      ||+|++..++|++++.  ..+|++++++|+|   ||++++.+...++
T Consensus        83 fD~v~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~~~~~~~~~~~  124 (234)
T d1xxla_          83 FDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPE  124 (234)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCS
T ss_pred             cceeeeeceeecccCH--HHHHHHHHHeeCC---CcEEEEEEcCCCC
Confidence            9999999999999876  4899999999999   9999998876654

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.61  E-value=4.9e-16  Score=110.85  Aligned_cols=80  Identities=21%  Similarity=0.329  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC
Q 037127           20 WNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ   99 (307)
Q Consensus        20 ~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~   99 (307)
                      +..+.+++.+++|++|+++||||+|..  ||+|++|||+++|+   +++.+.|+||+|++.|+|++.+          ++
T Consensus         6 l~~l~~~~~~~aL~~av~L~ifd~l~~--gp~s~~eLA~~~g~---~~~~l~rlLr~l~a~gl~~e~~----------~~   70 (85)
T d1tw3a1           6 LIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA----------PG   70 (85)
T ss_dssp             HHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE----------TT
T ss_pred             HHHHHchHHHHHHHHHHHcCcHHHhcc--CCCCHHHHHHHhCc---ChhHHHHHHHHHHHCCCeEecC----------CC
Confidence            455678899999999999999999975  89999999999999   7899999999999999999876          68


Q ss_pred             eeecChhcchhhcCC
Q 037127          100 GYVLTNASKLLLKDS  114 (307)
Q Consensus       100 ~y~~t~~s~~l~~~~  114 (307)
                      .|++|+.|+.|.+|+
T Consensus        71 ~y~lt~~s~~L~~Dh   85 (85)
T d1tw3a1          71 EFVPTEVGELLADDH   85 (85)
T ss_dssp             EEEECTTGGGGSTTS
T ss_pred             eEecCHHHHHhhcCC
Confidence            999999999998763

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.1e-16  Score=130.17  Aligned_cols=105  Identities=17%  Similarity=0.360  Sum_probs=90.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~v  264 (307)
                      ..+..+|||||||+|.++..+++.++. +++++|+ +.+++.|++     ...+++|+++|+.+ +.+  .||+|++..+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            345679999999999999999877753 8999999 889998876     24578999999987 443  4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +|++++++..++|++++++|+|   ||.++|.+.+.++
T Consensus       137 l~h~~~~~~~~~l~~i~~~Lk~---~G~~~i~~~~~~~  171 (222)
T d2ex4a1         137 IGHLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQE  171 (222)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSS
T ss_pred             cccchhhhhhhHHHHHHHhcCC---cceEEEEEccccc
Confidence            9999999888999999999999   9999999987665

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.61  E-value=3.3e-15  Score=125.48  Aligned_cols=101  Identities=14%  Similarity=0.234  Sum_probs=87.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--CccEEEechhhc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PADAVVLKWILH  266 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh  266 (307)
                      .+..+|||||||+|.++..+++.  +.+++++|+ +.+++.|++    ...++.++.+|+.+ +++  .+|+|++..++|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  113 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV  113 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence            45578999999999999999986  568999999 889988876    45678999999988 555  499999999999


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ++++++..++|+++.++|+|   ||+++|..+..
T Consensus       114 ~~~~~d~~~~l~~i~~~Lkp---gG~lii~~~~~  144 (226)
T d1ve3a1         114 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDL  144 (226)
T ss_dssp             GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECH
T ss_pred             hCChhHHHHHHHHHHHHcCc---CcEEEEEEcCc
Confidence            99988888999999999999   99998876643

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=4.8e-15  Score=126.81  Aligned_cols=106  Identities=20%  Similarity=0.298  Sum_probs=87.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~  256 (307)
                      ..++....  ..+.++|||||||+|.++..|++.  +.+++++|+ +.+++.|++    ...+++++++|+.+ +.+ .|
T Consensus        31 ~~~~~~~~--~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~f  106 (251)
T d1wzna1          31 EEIFKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF  106 (251)
T ss_dssp             HHHHHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHhc--CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhccccccc
Confidence            34455444  566789999999999999999997  458999999 889999887    34589999999988 555 59


Q ss_pred             cEEEec-hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          257 DAVVLK-WILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       257 D~i~~~-~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      |+|++. .++|+++.++..++|++++++|+|   ||+++|-
T Consensus       107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkp---gG~lii~  144 (251)
T d1wzna1         107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITD  144 (251)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             chHhhhhhhhhcCChHHHHHHHHHHHHHcCC---CcEEEEE
Confidence            999886 578888877888999999999999   8877764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.59  E-value=3.1e-15  Score=130.78  Aligned_cols=110  Identities=16%  Similarity=0.225  Sum_probs=92.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-C
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-P  255 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~  255 (307)
                      +.+++.+. .+.++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.|++    ...+++|+.+|+.+ +.+ .
T Consensus        16 ~~l~~~~~-~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~   94 (281)
T d2gh1a1          16 SFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDK   94 (281)
T ss_dssp             HHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSC
T ss_pred             HHHHHHHh-ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCC
Confidence            34444332 2567889999999999999999998874 78999999 888998876    34479999999987 445 5


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      ||+|++.+++|++++.+  ++|++++++|||   ||++++.|+.
T Consensus        95 fD~v~~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~lii~~~~  133 (281)
T d2gh1a1          95 YDIAICHAFLLHMTTPE--TMLQKMIHSVKK---GGKIICFEPH  133 (281)
T ss_dssp             EEEEEEESCGGGCSSHH--HHHHHHHHTEEE---EEEEEEEECC
T ss_pred             ceEEEEehhhhcCCCHH--HHHHHHHHHcCc---CcEEEEEECC
Confidence            99999999999999874  789999999999   9999999965

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.58  E-value=6.9e-15  Score=121.79  Aligned_cols=108  Identities=18%  Similarity=0.216  Sum_probs=89.9

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC-CC-Ccc
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA-IP-PAD  257 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~-~p-~~D  257 (307)
                      +++...  ...+.+|||||||+|..+..++++  +.+++++|+ +.+++.+++     ..+++++...|+.+. .+ .||
T Consensus        22 ~~~~~~--~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD   97 (198)
T d2i6ga1          22 VLAAAK--VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYD   97 (198)
T ss_dssp             HHHHHT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEE
T ss_pred             HHHHcc--cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccccccc
Confidence            444444  334569999999999999999998  568999999 778887765     357899999999883 33 599


Q ss_pred             EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      +|++..++|++++++..++|++++++|+|   ||++++.....
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~~~  137 (198)
T d2i6ga1          98 FILSTVVMMFLEAQTIPGLIANMQRCTKP---GGYNLIVAAMD  137 (198)
T ss_dssp             EEEEESCGGGSCTTHHHHHHHHHHHTEEE---EEEEEEEEEBC
T ss_pred             EEEEeeeeecCCHHHHHHHHHHHHHHcCC---CcEEEEEEecC
Confidence            99999999999998889999999999999   89988876653

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.53  E-value=3.6e-15  Score=107.61  Aligned_cols=86  Identities=20%  Similarity=0.240  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCC
Q 037127           14 EAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRN   93 (307)
Q Consensus        14 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~   93 (307)
                      +....+++.+.|++.+++|++|+++||||.|..  ||.|++|||+++|+   +++.+.|+|++|++.|+|++.+.     
T Consensus         6 ~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~--gp~t~~eLA~~~g~---~~~~l~rLlr~L~a~gll~~~~d-----   75 (92)
T d1qzza1           6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGEK-----   75 (92)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCCC-----
T ss_pred             hhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC--CCCCHHHHHHHHCc---CchHHHHHHHHHHHCCCeeeecC-----
Confidence            456778899999999999999999999999985  89999999999999   78999999999999999999862     


Q ss_pred             CCCCCCeeecChhcchhhc
Q 037127           94 NNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        94 ~~~~~~~y~~t~~s~~l~~  112 (307)
                         +.+.|++|+.|+.|++
T Consensus        76 ---~~~~~~~t~~g~lL~d   91 (92)
T d1qzza1          76 ---QGRPLRPTRLGMLLAD   91 (92)
T ss_dssp             ----CCCCEECTTGGGGST
T ss_pred             ---CCceecccHHHHhccC
Confidence               2467999999998864

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.53  E-value=6.6e-15  Score=108.61  Aligned_cols=100  Identities=21%  Similarity=0.291  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCC---CCHHHHHHHcCCCCCC---cccHHHHHHHHHhCCceeee
Q 037127           13 LEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKP---TTLNDLVSALTINPSK---TRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        13 ~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~---~t~~eLA~~~g~~~~~---~~~l~r~L~~L~~~g~l~~~   86 (307)
                      .++.-..++++.+++.+++|++|++|||||+|+.+|+|   +|+.|||.++..++.+   +..|.|+||.|++.|+|...
T Consensus         4 ~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~~   83 (110)
T d1fp1d1           4 DSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST   83 (110)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccccc
Confidence            35567788999999999999999999999999987544   8999999998863323   34699999999999999865


Q ss_pred             ccCCCCCCCCCCCeeecChhcchhhcCC
Q 037127           87 TLNSSRNNNDEEQGYVLTNASKLLLKDS  114 (307)
Q Consensus        87 ~~~~~~~~~~~~~~y~~t~~s~~l~~~~  114 (307)
                      ....  .+++.+..|.+||.+++|+++.
T Consensus        84 ~~~~--~~g~~e~~Y~Ltpvsk~Lv~de  109 (110)
T d1fp1d1          84 TRTI--EDGGAERVYGLSMVGKYLVPDE  109 (110)
T ss_dssp             EEEC--TTSCEEEEEEECTTGGGGSTTC
T ss_pred             cccC--CCCCeeeEEecchhhHhhcCCC
Confidence            4321  1122345799999999999874

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.53  E-value=3.4e-14  Score=116.53  Aligned_cols=109  Identities=6%  Similarity=0.010  Sum_probs=91.5

Q ss_pred             HHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEecC
Q 037127          187 IHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGD  248 (307)
Q Consensus       187 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d  248 (307)
                      ...+.  +.++.+|||||||+|..+..|+++  +.+++++|+ +.+++.|++                 ....++|..+|
T Consensus        13 ~~~l~--~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   88 (201)
T d1pjza_          13 WSSLN--VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   88 (201)
T ss_dssp             HHHHC--CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             HHHcC--CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence            44444  567889999999999999999998  789999999 889998876                 13557899999


Q ss_pred             CCCCCC----CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          249 MFEAIP----PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       249 ~~~~~p----~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +++..+    .+|+|+++.++|++++++....+++++++|||   ||++++.......
T Consensus        89 ~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp---gG~l~l~~~~~~~  143 (201)
T d1pjza_          89 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQ  143 (201)
T ss_dssp             CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCS
T ss_pred             ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC---CcEEEEEEccccc
Confidence            988432    48999999999999998888999999999999   8998887665544

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.48  E-value=1.9e-14  Score=105.82  Aligned_cols=98  Identities=22%  Similarity=0.291  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcccccccCC--CCCCHHHHHHHcCCC-CCCcccHHHHHHHHHhCCceeeeccCCC
Q 037127           15 AQAHVWNHIFNFINSMSLKCAVELSIPDIINKHG--KPTTLNDLVSALTIN-PSKTRCVYRLMRILIHSGFFAQQTLNSS   91 (307)
Q Consensus        15 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~--~~~t~~eLA~~~g~~-~~~~~~l~r~L~~L~~~g~l~~~~~~~~   91 (307)
                      +.-..++++++++.+++|++|++|||||+|+.+|  .++|..|||.+++.+ |..+..|+|+||+|++.|+|........
T Consensus         7 ~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~~~   86 (107)
T d1kyza1           7 ANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQ   86 (107)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeecCC
Confidence            3445668899999999999999999999999765  477999999999884 3224579999999999999986543211


Q ss_pred             CCCCCCCCeeecChhcchhhcCC
Q 037127           92 RNNNDEEQGYVLTNASKLLLKDS  114 (307)
Q Consensus        92 ~~~~~~~~~y~~t~~s~~l~~~~  114 (307)
                        +++.+.+|.+||.|++|+++.
T Consensus        87 --dg~~~~~Y~LTpvsk~Lv~de  107 (107)
T d1kyza1          87 --DGKVQRLYGLATVAKYLVKNE  107 (107)
T ss_dssp             --TSCEEEEEEECHHHHHHSCCT
T ss_pred             --CCCeeeEEecchhHHhhcCCC
Confidence              112245799999999999863

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.48  E-value=2.1e-13  Score=118.76  Aligned_cols=112  Identities=14%  Similarity=0.210  Sum_probs=94.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~  256 (307)
                      +.+++.+.  ++++.+|||||||.|.++..+++.++ .+++++|+ +..++.+++      ...++.+...|+.+....|
T Consensus        42 ~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f  118 (280)
T d2fk8a1          42 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV  118 (280)
T ss_dssp             HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence            55777777  78889999999999999999998875 69999999 777777765      4677888888877643469


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      |.|++..++++++++.-..+|++++++|||   ||+++|.+.+..
T Consensus       119 D~i~si~~~eh~~~~~~~~~f~~i~~~Lkp---gG~~~i~~i~~~  160 (280)
T d2fk8a1         119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSY  160 (280)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECC
T ss_pred             hhhhHhhHHHHhhhhhHHHHHHHHHhccCC---CceEEEEEeecc
Confidence            999999999999988777999999999999   999999876544

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=8.7e-14  Score=115.64  Aligned_cols=92  Identities=14%  Similarity=0.095  Sum_probs=77.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDE  271 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~  271 (307)
                      +..+|||||||+|.++..+.      +++++|+ +.+++.+++  .+++++++|+.+ +.+  .||+|++.++||++++.
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~--~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~  107 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK--RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP  107 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH--TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred             CCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc--ccccccccccccccccccccccccccccccccccc
Confidence            34589999999999988774      3588999 888988883  368999999987 555  49999999999999876


Q ss_pred             HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          272 ECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       272 ~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                        .++|++++++|+|   ||+++|.++..
T Consensus       108 --~~~l~~~~~~L~p---gG~l~i~~~~~  131 (208)
T d1vlma_         108 --ERALKEAYRILKK---GGYLIVGIVDR  131 (208)
T ss_dssp             --HHHHHHHHHHEEE---EEEEEEEEECS
T ss_pred             --ccchhhhhhcCCC---CceEEEEecCC
Confidence              4899999999999   99999988643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.47  E-value=1e-13  Score=118.35  Aligned_cols=96  Identities=15%  Similarity=0.171  Sum_probs=79.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-CccEEEec-hhhc
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PADAVVLK-WILH  266 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D~i~~~-~vLh  266 (307)
                      ..+++|||||||+|.++..+++..  .+++++|+ +.+++.|++    ...+++|+++|+.+ +.+ .||+|++. ++++
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence            345789999999999999999985  47999999 889998876    45589999999987 444 59998865 6776


Q ss_pred             cC-ChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          267 DW-NDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       267 ~~-~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      ++ +.++..++|++++++|+|   ||.+++
T Consensus       114 ~~~~~~~~~~~l~~~~~~Lkp---gG~~i~  140 (246)
T d1y8ca_         114 YIIDSDDLKKYFKAVSNHLKE---GGVFIF  140 (246)
T ss_dssp             GCCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhCCC---CeEEEE
Confidence            66 456778899999999999   787664

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.47  E-value=8.5e-14  Score=117.42  Aligned_cols=97  Identities=16%  Similarity=0.330  Sum_probs=82.5

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CCC-CccEEEechhhccCCh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIP-PADAVVLKWILHDWND  270 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~~~  270 (307)
                      .++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++.++||++++
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d   96 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD   96 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCC
Confidence            446689999999999999999874  47999999 889999987 66789999999877 334 4999999999999988


Q ss_pred             hHHHHHHHHHH-HhccCCCCCcEEEEEee
Q 037127          271 EECVKILKKCK-EAITSNSKIGKVIIIDM  298 (307)
Q Consensus       271 ~~~~~~L~~~~-~~L~p~~~gg~lli~e~  298 (307)
                      +  ..+|++++ ++|+|   ||.++|.-+
T Consensus        97 ~--~~~l~~i~~~~Lk~---gG~l~i~~p  120 (225)
T d2p7ia1          97 P--VALLKRINDDWLAE---GGRLFLVCP  120 (225)
T ss_dssp             H--HHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred             H--HHHHHHHHHHhcCC---CceEEEEeC
Confidence            7  48899998 68999   888888654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.46  E-value=1.7e-13  Score=117.51  Aligned_cols=98  Identities=14%  Similarity=0.120  Sum_probs=81.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CC-C--CccEEEech
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AI-P--PADAVVLKW  263 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~-p--~~D~i~~~~  263 (307)
                      ++..+|||||||+|..+..+++... .+++++|+ +.+++.|++      ...++.|.++|+.. +. +  .||+|++..
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            5678999999999999999988743 37999999 888988875      34579999999976 33 2  499999999


Q ss_pred             hhccC--ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          264 ILHDW--NDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       264 vLh~~--~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ++|++  +.++...+|++++++|+|   ||++++.
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~---gG~~i~~  133 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRP---GGYFIMT  133 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCC---CCEEEEE
Confidence            99986  345677899999999999   8888764

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2.8e-13  Score=117.27  Aligned_cols=93  Identities=14%  Similarity=0.248  Sum_probs=80.9

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND  270 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~  270 (307)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++...+++|..+|+.+ +++  .+|+|++.+++|+   
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~---  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK---  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence            4677999999999999999999999999999999 88899888766789999999988 555  4999998887775   


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          271 EECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                            +++++++|||   ||++++..+.
T Consensus       160 ------~~e~~rvLkp---gG~l~~~~p~  179 (268)
T d1p91a_         160 ------AEELARVVKP---GGWVITATPG  179 (268)
T ss_dssp             ------HHHHHHHEEE---EEEEEEEEEC
T ss_pred             ------HHHHHHHhCC---CcEEEEEeeC
Confidence                  4668899999   8999988753

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=2e-13  Score=115.78  Aligned_cols=96  Identities=16%  Similarity=0.230  Sum_probs=78.5

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CCC--CccEEEe-chhhcc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIP--PADAVVL-KWILHD  267 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p--~~D~i~~-~~vLh~  267 (307)
                      .....+|||||||+|.++..+++.  +.+++++|+ +.+++.|++ ...  .++.+|+.+ +++  .+|+|++ ..++|+
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~--~~~~~~~~~l~~~~~~fD~ii~~~~~~~~  115 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK--NVVEAKAEDLPFPSGAFEAVLALGDVLSY  115 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS--CEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred             cCCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccccc--ccccccccccccccccccceeeecchhhh
Confidence            356779999999999999999986  579999999 889999986 333  356788877 555  4999986 579999


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +++.+  ++|++++++|+|   ||.++|..+
T Consensus       116 ~~d~~--~~l~~i~r~Lk~---gG~~ii~~~  141 (246)
T d2avna1         116 VENKD--KAFSEIRRVLVP---DGLLIATVD  141 (246)
T ss_dssp             CSCHH--HHHHHHHHHEEE---EEEEEEEEE
T ss_pred             hhhHH--HHHHHHHhhcCc---CcEEEEEEC
Confidence            98875  789999999999   888877643

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.3e-13  Score=112.77  Aligned_cols=104  Identities=7%  Similarity=-0.071  Sum_probs=88.5

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----------------------cCCCeEEEecCCC
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----------------------DLANLKYVGGDMF  250 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------------------~~~rv~~~~~d~~  250 (307)
                      .....+|||+|||+|..+..|++.  +.+++++|+ +.+++.+++                      ...++++.++|++
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            456779999999999999999997  779999999 778877653                      2458999999998


Q ss_pred             C--CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          251 E--AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       251 ~--~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +  +.+  .+|+|+...++|+++.++...++++++++|+|   ||++++.....++
T Consensus       121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp---gG~~~l~~~~~~~  173 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK---KFQYLLCVLSYDP  173 (229)
T ss_dssp             GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCT
T ss_pred             hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC---cceEEEEEcccCC
Confidence            7  222  49999999999999998889999999999999   8998888776654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=9.4e-13  Score=114.69  Aligned_cols=112  Identities=13%  Similarity=0.188  Sum_probs=94.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~  256 (307)
                      +.+++.+.  +.++.+|||||||.|..+..+++.+ +++++++++ +..++.+++      ..+++++...|+.+....|
T Consensus        52 ~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f  128 (285)
T d1kpga_          52 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV  128 (285)
T ss_dssp             HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence            55677776  7888999999999999999999998 589999999 666776655      5789999999987632359


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      |.|+.-..+.++..+.-..++++++++|+|   ||+++|.+.+..
T Consensus       129 D~i~si~~~eh~~~~~~~~~~~~~~r~Lkp---gG~~~l~~i~~~  170 (285)
T d1kpga_         129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGL  170 (285)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEEC
T ss_pred             cceeeehhhhhcCchhHHHHHHHHHhhcCC---CCcEEEEEEecc
Confidence            999999999998776556899999999999   999999887643

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=1.5e-12  Score=113.66  Aligned_cols=113  Identities=13%  Similarity=0.164  Sum_probs=94.0

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~  256 (307)
                      +.+++.+.  +.++.+|||||||.|.++..++++++ ++++++++ +..++.+++      ...++++...|+..+...|
T Consensus        51 ~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f  127 (291)
T d1kpia_          51 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV  127 (291)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence            55677777  78899999999999999999999886 69999999 666666554      6789999999986544469


Q ss_pred             cEEEechhhccCChh-------HHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          257 DAVVLKWILHDWNDE-------ECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       257 D~i~~~~vLh~~~~~-------~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      |.|++...+.++++.       .-..++++++++|+|   ||++++...+.++
T Consensus       128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp---gG~~~l~~i~~~~  177 (291)
T d1kpia_         128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPD  177 (291)
T ss_dssp             SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT---TCEEEEEEEECCC
T ss_pred             ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC---CCceEEEEEeccC
Confidence            999999999888763       236899999999999   9999998887654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.38  E-value=1.6e-12  Score=106.92  Aligned_cols=105  Identities=15%  Similarity=0.291  Sum_probs=84.1

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCCCCC--
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEAIP--  254 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~~p--  254 (307)
                      .++..+.  ..+..+|||||||+|.++..+++.++  +++++|+ +.+++.+++       ...++++..+|++++.+  
T Consensus        43 lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~  118 (194)
T d1dusa_          43 ILVENVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             HHHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence            3455555  56678999999999999999999876  5788898 888888875       24579999999998655  


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      .||+|++.-++|.. .+....+++++.+.|+|   ||+++|+.
T Consensus       119 ~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~Lkp---gG~l~i~~  157 (194)
T d1dusa_         119 KYNKIITNPPIRAG-KEVLHRIIEEGKELLKD---NGEIWVVI  157 (194)
T ss_dssp             CEEEEEECCCSTTC-HHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CceEEEEcccEEec-chhhhhHHHHHHHhcCc---CcEEEEEE
Confidence            49999998887744 44456899999999999   89887653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.36  E-value=1.9e-12  Score=109.34  Aligned_cols=105  Identities=15%  Similarity=0.117  Sum_probs=87.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCCCC----CccEEEechhh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEAIP----PADAVVLKWIL  265 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~~p----~~D~i~~~~vL  265 (307)
                      +.+..+|||||||+|.++..+++..|+.+++++|+ |.+++.+++   ..+++.++.+|...+.+    .+|++++.+.+
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~  151 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV  151 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence            67788999999999999999999999999999999 889888876   45678888888887422    36777777778


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      |++++.  ..+++++++.|||   ||+++|.+.....+
T Consensus       152 ~~~~~~--~~~l~~~~r~LKp---gG~~~i~~k~~~~d  184 (230)
T d1g8sa_         152 AQPNQA--EILIKNAKWFLKK---GGYGMIAIKARSID  184 (230)
T ss_dssp             CSTTHH--HHHHHHHHHHEEE---EEEEEEEEEGGGTC
T ss_pred             cchHHH--HHHHHHHHHhccc---CceEEEEeeccccC
Confidence            766654  5789999999999   99999988766654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.29  E-value=3.2e-12  Score=104.47  Aligned_cols=102  Identities=24%  Similarity=0.291  Sum_probs=82.5

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC---CCCC
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AIPP  255 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~p~  255 (307)
                      ++..+.  ..+..+|||||||+|.++..+++..  .+++++|. |.+++.|++      ..++|+++++|+.+   +.+.
T Consensus        25 il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~  100 (186)
T d1l3ia_          25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD  100 (186)
T ss_dssp             HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred             HHHhcC--CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence            344444  6678899999999999999999875  48999999 889998876      45799999999876   3346


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +|++++....+++     ..+++.+.+.|+|   ||++++....
T Consensus       101 ~D~v~~~~~~~~~-----~~~~~~~~~~Lkp---gG~lvi~~~~  136 (186)
T d1l3ia_         101 IDIAVVGGSGGEL-----QEILRIIKDKLKP---GGRIIVTAIL  136 (186)
T ss_dssp             EEEEEESCCTTCH-----HHHHHHHHHTEEE---EEEEEEEECB
T ss_pred             cCEEEEeCccccc-----hHHHHHHHHHhCc---CCEEEEEeec
Confidence            9999988766543     4789999999999   8998876543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.2e-12  Score=110.97  Aligned_cols=111  Identities=14%  Similarity=0.129  Sum_probs=88.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--------------cCCCeEEEecC
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--------------DLANLKYVGGD  248 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------------~~~rv~~~~~d  248 (307)
                      ..+++.+.  +.+..+|||||||+|.++..+++.++..+++|+|+ +.+++.|++              ...+|+|+++|
T Consensus       141 ~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         141 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            45666666  67788999999999999999999999889999999 777777654              24679999999


Q ss_pred             CCC-CCC----CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127          249 MFE-AIP----PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN  302 (307)
Q Consensus       249 ~~~-~~p----~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~  302 (307)
                      +.+ ++.    .+|+|++.+.+| +++  ....|+++.+.|||   ||+|++.+.+.+.
T Consensus       219 ~~~~~~~~~~~~advi~~~~~~f-~~~--~~~~l~e~~r~LKp---Gg~iv~~~~~~~~  271 (328)
T d1nw3a_         219 FLSEEWRERIANTSVIFVNNFAF-GPE--VDHQLKERFANMKE---GGRIVSSKPFAPL  271 (328)
T ss_dssp             TTSHHHHHHHHHCSEEEECCTTT-CHH--HHHHHHHHHTTCCT---TCEEEESSCSSCT
T ss_pred             ccccccccccCcceEEEEcceec-chH--HHHHHHHHHHhCCC---CcEEEEecccCCC
Confidence            998 332    368888766554 433  45789999999999   9999998877654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.27  E-value=9.4e-12  Score=103.49  Aligned_cols=101  Identities=14%  Similarity=0.092  Sum_probs=79.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC-CC--CccEE-Eechhh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA-IP--PADAV-VLKWIL  265 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~-~p--~~D~i-~~~~vL  265 (307)
                      +.+..+|||||||+|..+..+++..|+.+++++|+ |.+++.+++   ..+++.++.+|...+ .+  .+|.+ ++.+.+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~  133 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI  133 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence            67789999999999999999999999989999999 889998876   457899999998873 22  22222 223345


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      +++.+.  ..+|+++++.|||   ||+++|.+..
T Consensus       134 ~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~  162 (209)
T d1nt2a_         134 AQKNQI--EILKANAEFFLKE---KGEVVIMVKA  162 (209)
T ss_dssp             CSTTHH--HHHHHHHHHHEEE---EEEEEEEEEH
T ss_pred             cChhhH--HHHHHHHHHHhcc---CCeEEEEEEc
Confidence            444443  5889999999999   9999987654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.26  E-value=1.9e-11  Score=101.08  Aligned_cols=96  Identities=19%  Similarity=0.221  Sum_probs=77.9

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CCC--CccEEEechhhc
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIP--PADAVVLKWILH  266 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p--~~D~i~~~~vLh  266 (307)
                      ..|||||||+|.++..+++.+|+..++++|+ +.++..+.+     ..++|.++.+|+..   .++  .+|.+++.+..+
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P  110 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP  110 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence            4799999999999999999999999999999 777766654     56789999999876   144  489988888776


Q ss_pred             cCChhH------HHHHHHHHHHhccCCCCCcEEEEE
Q 037127          267 DWNDEE------CVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       267 ~~~~~~------~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .+....      ...+|+.++++|||   ||.|+|.
T Consensus       111 ~~k~~h~k~Rl~~~~~l~~~~r~Lkp---gG~l~i~  143 (204)
T d2fcaa1         111 WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFK  143 (204)
T ss_dssp             CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEE
T ss_pred             cchhhhcchhhhHHHHHHHHHHhCCC---CcEEEEE
Confidence            333221      14799999999999   9999886

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=6e-12  Score=110.00  Aligned_cols=97  Identities=18%  Similarity=0.209  Sum_probs=74.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c-----CCCeEEEecCCCC---CCC---Ccc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D-----LANLKYVGGDMFE---AIP---PAD  257 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~-----~~rv~~~~~d~~~---~~p---~~D  257 (307)
                      ..+.++|||||||+|.++..|+++  +.+++++|+ +.+++.|++    .     ..+..+...++..   ..|   .+|
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence            345679999999999999999997  679999999 889998875    1     1234556666654   122   589


Q ss_pred             EEEec-hhhccCCh-----hHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          258 AVVLK-WILHDWND-----EECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       258 ~i~~~-~vLh~~~~-----~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      +|++. .+++++++     ++...+|++++++|+|   ||++++
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~  172 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVI  172 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCc---CcEEEE
Confidence            88765 57877754     4567899999999999   787665

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.2e-11  Score=105.50  Aligned_cols=98  Identities=17%  Similarity=0.232  Sum_probs=72.6

Q ss_pred             CCCeEEEecCCchHHHHHHHH----HCCCC--eEEEecc-hHHHHhchh------cCCCeEE--EecCCC-------CCC
Q 037127          196 GLNSLVDVGGATGTVAKAIAK----AFPNL--ECTDFDL-PHVVNGLES------DLANLKY--VGGDMF-------EAI  253 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~----~~p~~--~~~~~Dl-~~~~~~a~~------~~~rv~~--~~~d~~-------~~~  253 (307)
                      +..+|||||||+|.++..+++    .+|+.  +++++|. +.+++.+++      ....+.+  ...++.       .+.
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK  119 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence            345799999999998777654    45654  5789998 788888876      1234444  333331       122


Q ss_pred             C--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          254 P--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       254 p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +  .||+|++.+++|++++.  ..+|++++++|+|   ||.++|+..
T Consensus       120 ~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~Lkp---gG~l~i~~~  161 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVV  161 (280)
T ss_dssp             SCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             CCCceeEEEEccceecCCCH--HHHHHHHHhhCCC---CCEEEEEEe
Confidence            2  49999999999999876  4899999999999   898888754

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=1.9e-11  Score=104.77  Aligned_cols=106  Identities=14%  Similarity=0.241  Sum_probs=88.5

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh--------cCCCeEEEecCCCC-
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES--------DLANLKYVGGDMFE-  251 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~-  251 (307)
                      +..++..++  ..++.+|||+|||+|.++..|++. .|+-+++.+|. +++++.|++        ..+++.++.+|+.+ 
T Consensus        85 ~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~  162 (264)
T d1i9ga_          85 AAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS  162 (264)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred             HHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence            345566666  788999999999999999999988 68899999999 888888876        35799999999987 


Q ss_pred             CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          252 AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       252 ~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      +++  .+|.|++     |.+++.  ..+.+++++|||   ||++++..+..
T Consensus       163 ~~~~~~fDaV~l-----dlp~P~--~~l~~~~~~Lkp---GG~lv~~~P~i  203 (264)
T d1i9ga_         163 ELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVA---GGVLMVYVATV  203 (264)
T ss_dssp             CCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEESSH
T ss_pred             cccCCCcceEEE-----ecCCHH--HHHHHHHhccCC---CCEEEEEeCcc
Confidence            455  4999876     466664  779999999999   99999987764

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.4e-12  Score=107.06  Aligned_cols=97  Identities=13%  Similarity=0.043  Sum_probs=76.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC---CCC--CccEEE----
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE---AIP--PADAVV----  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~---~~p--~~D~i~----  260 (307)
                      ..+.+|||||||+|..+..+++..| .+++++|+ |.+++.|++    ...++.++.+|...   +++  .||.|+    
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence            4567999999999999999998765 48999999 889999876    45667888877643   344  377766    


Q ss_pred             -echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          261 -LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       261 -~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                       ....++++++.  ..++++++++|||   ||++++.+
T Consensus       131 ~~~~~~~~~~~~--~~~~~~~~r~Lkp---GG~~~~~~  163 (229)
T d1zx0a1         131 PLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYCN  163 (229)
T ss_dssp             CCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEECC
T ss_pred             ccccccccccCH--HHHHHHHHHHcCC---CcEEEEEe
Confidence             46667767664  4899999999999   88887754

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=9.7e-12  Score=106.34  Aligned_cols=97  Identities=20%  Similarity=0.377  Sum_probs=76.7

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--CccEEEechhhc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVVLKWILH  266 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh  266 (307)
                      ..+..+|||+|||+|.++..+++.  +.+++++|+ |.+++.|++    ..-++++..+|+.+..+  .||+|++....+
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~  195 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc
Confidence            356789999999999999988876  468999999 888988876    34467888998876443  599998764443


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                           ....+++.++++|+|   ||++++.+...
T Consensus       196 -----~l~~l~~~~~~~Lkp---GG~lilSgil~  221 (254)
T d2nxca1         196 -----LHAALAPRYREALVP---GGRALLTGILK  221 (254)
T ss_dssp             -----HHHHHHHHHHHHEEE---EEEEEEEEEEG
T ss_pred             -----cHHHHHHHHHHhcCC---CcEEEEEecch
Confidence                 345788999999999   89999876543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.21  E-value=2.6e-11  Score=101.08  Aligned_cols=99  Identities=15%  Similarity=0.294  Sum_probs=81.3

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP---  254 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p---  254 (307)
                      .++..+.  +.+..+|||||||+|+++..+++.. ++.+++++|. +.+++.+++     ...++.++.+|..+..+   
T Consensus        66 ~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~  143 (213)
T d1dl5a1          66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (213)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence            3455565  7788899999999999999999876 6779999998 888888876     46789999999887333   


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .||+|++...+++.+++        +.+.|+|   ||++++.
T Consensus       144 ~fD~I~~~~~~~~~p~~--------l~~~Lkp---GG~lv~p  174 (213)
T d1dl5a1         144 PYDVIFVTVGVDEVPET--------WFTQLKE---GGRVIVP  174 (213)
T ss_dssp             CEEEEEECSBBSCCCHH--------HHHHEEE---EEEEEEE
T ss_pred             chhhhhhhccHHHhHHH--------HHHhcCC---CcEEEEE
Confidence            49999999999988752        4567999   9998873

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.19  E-value=4.2e-11  Score=101.91  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=81.9

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--  254 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--  254 (307)
                      .++...+  ..++.+|||+|||+|.++..+++. .|+.+++++|. ++.++.|++      ...+|++..+|+.+..+  
T Consensus        76 ~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~  153 (250)
T d1yb2a1          76 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ  153 (250)
T ss_dssp             -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred             HHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence            3455555  677899999999999999999987 57889999999 778888876      45789999999998655  


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .||.|++     +.+++.  ..|.+++++|||   ||++++..+.
T Consensus       154 ~fD~V~l-----d~p~p~--~~l~~~~~~LKp---GG~lv~~~P~  188 (250)
T d1yb2a1         154 MYDAVIA-----DIPDPW--NHVQKIASMMKP---GSVATFYLPN  188 (250)
T ss_dssp             CEEEEEE-----CCSCGG--GSHHHHHHTEEE---EEEEEEEESS
T ss_pred             eeeeeee-----cCCchH--HHHHHHHHhcCC---CceEEEEeCC
Confidence            4999886     355543  679999999999   9999987654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.16  E-value=1.4e-10  Score=95.79  Aligned_cols=95  Identities=19%  Similarity=0.296  Sum_probs=75.7

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CCC--CccEEEechhhc
Q 037127          198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIP--PADAVVLKWILH  266 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p--~~D~i~~~~vLh  266 (307)
                      ..|||||||+|.++..+++.+|+..++++|+ +.++..+.+     ..++|.++.+|+..   -+|  .+|.|++...-.
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP  112 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP  112 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence            4799999999999999999999999999999 666666544     56789999999866   244  478877655443


Q ss_pred             cCChhH-------HHHHHHHHHHhccCCCCCcEEEEE
Q 037127          267 DWNDEE-------CVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       267 ~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                       |+...       ...+|+.+++.|+|   ||.++|.
T Consensus       113 -w~K~~h~krRl~~~~~l~~~~~~Lkp---gG~l~i~  145 (204)
T d1yzha1         113 -WPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFK  145 (204)
T ss_dssp             -CCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEE
T ss_pred             -ccchhhhhhhhhHHHHHHHHHHhCCC---CcEEEEE
Confidence             55432       14789999999999   9999875

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=1.3e-10  Score=105.13  Aligned_cols=113  Identities=15%  Similarity=0.226  Sum_probs=85.7

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--------------cCCCeEE-Ee
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--------------DLANLKY-VG  246 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------------~~~rv~~-~~  246 (307)
                      ...+++.++  +.+..+|||||||+|..+..+++.+|..+++|+|+ +.+++.|++              ....+.+ ..
T Consensus       205 i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         205 LSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            455666666  77788999999999999999999999889999999 888888765              1233444 45


Q ss_pred             cCCCCC------CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          247 GDMFEA------IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       247 ~d~~~~------~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      ++++..      ++.+|++++.+.+| ++  +....|+++.+.|||   ||+|++.+.+.+..
T Consensus       283 ~~f~~~~~~d~~~~~adVV~inn~~f-~~--~l~~~L~ei~r~LKP---GGrIVs~~~~~~~~  339 (406)
T d1u2za_         283 KSFVDNNRVAELIPQCDVILVNNFLF-DE--DLNKKVEKILQTAKV---GCKIISLKSLRSLT  339 (406)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTTC-CH--HHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred             echhhccccccccccceEEEEecccC-ch--HHHHHHHHHHHhcCC---CcEEEEecccCCCc
Confidence            566552      23578888776543 33  356889999999999   99999988776543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=7.9e-11  Score=101.26  Aligned_cols=105  Identities=17%  Similarity=0.221  Sum_probs=86.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC-
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP-  254 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p-  254 (307)
                      ..++..++  +.+..+|||+|||+|.++..+++.. |+.+++++|. +.+++.|++      ..+++.+..+|+...++ 
T Consensus        93 ~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~  170 (266)
T d1o54a_          93 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE  170 (266)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred             HHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence            44566666  7889999999999999999999885 7889999999 888988877      45789999999876554 


Q ss_pred             -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                       .+|.++     ++.+++.  .+|++++++|||   ||++++..+..
T Consensus       171 ~~~D~V~-----~d~p~p~--~~l~~~~~~LKp---GG~lv~~~P~~  207 (266)
T d1o54a_         171 KDVDALF-----LDVPDPW--NYIDKCWEALKG---GGRFATVCPTT  207 (266)
T ss_dssp             CSEEEEE-----ECCSCGG--GTHHHHHHHEEE---EEEEEEEESSH
T ss_pred             cceeeeE-----ecCCCHH--HHHHHHHhhcCC---CCEEEEEeCcc
Confidence             477665     4677764  789999999999   99999876653

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=6.4e-10  Score=95.65  Aligned_cols=98  Identities=23%  Similarity=0.325  Sum_probs=77.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEechh--
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLKWI--  264 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~~v--  264 (307)
                      ....+|||+|||+|..+..++..+|+.+++++|+ +..++.|++     ...+|+|+.+|++++.+  .||+|+++=.  
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi  186 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  186 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence            4567899999999999999999999999999999 888888876     34689999999999766  4999988522  


Q ss_pred             -----------hccCCh----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          265 -----------LHDWND----------EECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       265 -----------Lh~~~~----------~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                                 +.+-|.          +-..++++.+.+.|+|   ||.+++
T Consensus       187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~---~G~l~l  235 (274)
T d2b3ta1         187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLL  235 (274)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred             hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC---CCEEEE
Confidence                       211110          1245688999999998   666554

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.6e-10  Score=94.04  Aligned_cols=100  Identities=15%  Similarity=0.143  Sum_probs=78.8

Q ss_pred             HHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh----------cCCCeEEEecCCCCCC
Q 037127          186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES----------DLANLKYVGGDMFEAI  253 (307)
Q Consensus       186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~----------~~~rv~~~~~d~~~~~  253 (307)
                      ++..+...+++..+|||||||+|+.+..+++. .|..+++++|. +++++.+++          ...++.++.+|.....
T Consensus        66 ~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~  145 (224)
T d1i1na_          66 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY  145 (224)
T ss_dssp             HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred             HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc
Confidence            44444212567789999999999999999886 46789999999 888888765          2478999999988733


Q ss_pred             C---CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          254 P---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       254 p---~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +   .||+|++...+++.++        .+.+.|+|   ||++++.
T Consensus       146 ~~~~~fD~I~~~~~~~~ip~--------~l~~~Lkp---GG~LV~p  180 (224)
T d1i1na_         146 AEEAPYDAIHVGAAAPVVPQ--------ALIDQLKP---GGRLILP  180 (224)
T ss_dssp             GGGCCEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEE
T ss_pred             chhhhhhhhhhhcchhhcCH--------HHHhhcCC---CcEEEEE
Confidence            3   4999999999988775        25678999   8999874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=3.6e-10  Score=99.65  Aligned_cols=96  Identities=16%  Similarity=0.155  Sum_probs=75.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechhh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWIL  265 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~vL  265 (307)
                      .+.++|||||||+|.++..+++..+ .+++++|.+++...+.+      ..++|+++.+|+.+ +.|  .+|+|++..+.
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            3467899999999999999888643 47999999554444433      67899999999988 454  59999988777


Q ss_pred             ccCCh-hHHHHHHHHHHHhccCCCCCcEEE
Q 037127          266 HDWND-EECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       266 h~~~~-~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      |.... .....++..+.+.|+|   ||+++
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp---~G~ii  137 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAP---DGLIF  137 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             eeeccHHHHHHHHHHHHhcCCC---CeEEE
Confidence            76443 3456889999999999   78776

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6e-10  Score=98.17  Aligned_cols=106  Identities=15%  Similarity=0.169  Sum_probs=83.7

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh----------------cCCCeEE
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES----------------DLANLKY  244 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~----------------~~~rv~~  244 (307)
                      +..++..++  +.++.+|||+|||+|.++..|++. .|+-+++.+|. +++++.|++                ..+++.+
T Consensus        87 ~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~  164 (324)
T d2b25a1          87 INMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF  164 (324)
T ss_dssp             HHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred             HHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence            345566666  788899999999999999999987 58889999999 888888765                2578999


Q ss_pred             EecCCCCC---CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          245 VGGDMFEA---IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       245 ~~~d~~~~---~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      ..+|+...   ++  .+|.|++     |++++.  ..|.+++++|||   ||+++++-++.
T Consensus       165 ~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKp---GG~lv~~~P~i  215 (324)
T d2b25a1         165 IHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKH---GGVCAVYVVNI  215 (324)
T ss_dssp             EESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEE---EEEEEEEESSH
T ss_pred             EecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccC---CCEEEEEeCCH
Confidence            99998763   23  4898876     455543  569999999999   99999876643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.8e-11  Score=100.76  Aligned_cols=103  Identities=15%  Similarity=0.061  Sum_probs=73.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCC---------------------------
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLAN---------------------------  241 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~r---------------------------  241 (307)
                      ..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.|++    ....                           
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  127 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence            3456799999999999887776653 237999999 888888875    1111                           


Q ss_pred             ---e-EEEecCCCC-----CCC--CccEEEechhhccCCh--hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          242 ---L-KYVGGDMFE-----AIP--PADAVVLKWILHDWND--EECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       242 ---v-~~~~~d~~~-----~~p--~~D~i~~~~vLh~~~~--~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                         + .....+...     +.+  .+|+|++..++|+.+.  ++...+++++++.|||   ||++++.+...
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---GG~li~~~~~~  196 (257)
T d2a14a1         128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLR  196 (257)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESS
T ss_pred             hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC---CcEEEEEEecc
Confidence               1 111122221     233  4999999999998653  4567899999999999   89998887643

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=6.8e-10  Score=98.31  Aligned_cols=96  Identities=15%  Similarity=0.171  Sum_probs=75.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechhh
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWIL  265 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~vL  265 (307)
                      .+.++|||||||+|.++..++++. ..+++++|.++++..+++      ..++++++.+|+.+ +.|  .+|+|++..+.
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            346799999999999999888864 348999999777666654      57899999999988 555  49999987777


Q ss_pred             ccCCh-hHHHHHHHHHHHhccCCCCCcEEE
Q 037127          266 HDWND-EECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       266 h~~~~-~~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      |.... .....++..+.+.|||   ||+++
T Consensus       116 ~~~~~e~~~~~~~~a~~r~Lkp---gG~ii  142 (328)
T d1g6q1_         116 YFLLYESMMDTVLYARDHYLVE---GGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             eeeccchhHHHHHHHHHhccCC---CeEEE
Confidence            65443 3345788888999999   78765

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.9e-09  Score=94.65  Aligned_cols=97  Identities=19%  Similarity=0.180  Sum_probs=74.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~v  264 (307)
                      ..+.++|||||||+|.++..++++.+ .+++++|..+....+.+      ..++++++.+|+.+ +.|  .+|+|++..+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence            34577999999999999999999754 48999999444333332      67899999999988 444  5999999888


Q ss_pred             hccCChh-HHHHHHHHHHHhccCCCCCcEEE
Q 037127          265 LHDWNDE-ECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       265 Lh~~~~~-~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      .|....+ ....++....+.|+|   ||+++
T Consensus       112 ~~~~~~e~~~~~~~~a~~~~Lkp---~G~ii  139 (311)
T d2fyta1         112 GYFLLFESMLDSVLYAKNKYLAK---GGSVY  139 (311)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred             eeecccccccHHHHHHHHhcCCC---CcEEe
Confidence            8775544 345677777889999   78776

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=6.8e-10  Score=95.24  Aligned_cols=103  Identities=17%  Similarity=0.202  Sum_probs=74.5

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCC---------------------------
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLAN---------------------------  241 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~r---------------------------  241 (307)
                      ..++.+|||||||+|.+....+..... +++++|. +.+++.+++    ....                           
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            346789999999999876544444433 7999999 888888865    1111                           


Q ss_pred             ----eEEEecCCCCC-------C-C-CccEEEechhhccCCh--hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          242 ----LKYVGGDMFEA-------I-P-PADAVVLKWILHDWND--EECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       242 ----v~~~~~d~~~~-------~-p-~~D~i~~~~vLh~~~~--~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                          -.....|+.++       . + .+|+|++..+||+.+.  ++-.+.|+++++.|||   ||.+++.+...
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP---GG~li~~~~~~  201 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALE  201 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEES
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC---CCEEEEecccC
Confidence                12344566542       1 1 3899999999998652  3567899999999999   89998887654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.94  E-value=2.2e-09  Score=89.66  Aligned_cols=97  Identities=16%  Similarity=0.163  Sum_probs=78.1

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCCCC---Ccc
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEAIP---PAD  257 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~~p---~~D  257 (307)
                      .++..++  +.+..+|||||||+|+++..|++..  -+++.+|. +..++.|++   ...+++++.+|.....|   .||
T Consensus        61 ~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD  136 (224)
T d1vbfa_          61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD  136 (224)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHHhh--hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence            3456666  7788899999999999999999884  47899998 888888876   46789999999877433   499


Q ss_pred             EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      .|++...++..++.        +.+.|+|   ||++++.
T Consensus       137 ~Iiv~~a~~~ip~~--------l~~qLk~---GGrLV~p  164 (224)
T d1vbfa_         137 RVVVWATAPTLLCK--------PYEQLKE---GGIMILP  164 (224)
T ss_dssp             EEEESSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred             HHHhhcchhhhhHH--------HHHhcCC---CCEEEEE
Confidence            99999888877642        4467998   8998873

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.93  E-value=1.7e-09  Score=88.33  Aligned_cols=98  Identities=16%  Similarity=0.228  Sum_probs=73.9

Q ss_pred             cCCCeEEEecCCchHH----HHHHHHHC----CCCeEEEecc-hHHHHhchh----------------------------
Q 037127          195 EGLNSLVDVGGATGTV----AKAIAKAF----PNLECTDFDL-PHVVNGLES----------------------------  237 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~----~~~l~~~~----p~~~~~~~Dl-~~~~~~a~~----------------------------  237 (307)
                      .+..+|+++|||+|.=    ++.+.+..    ..+++++.|+ +.+++.|++                            
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            4567999999999973    33334332    2457999999 788887763                            


Q ss_pred             --------cCCCeEEEecCCCCCC----CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          238 --------DLANLKYVGGDMFEAI----PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       238 --------~~~rv~~~~~d~~~~~----p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                              ...++.+...+...+.    ..+|+|+|++||++++++...++|++++++|+|   ||.|+|
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p---GG~L~l  169 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA  169 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence                    0123567777776632    259999999999999999889999999999999   787665

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.92  E-value=3.8e-09  Score=88.37  Aligned_cols=99  Identities=16%  Similarity=0.171  Sum_probs=76.9

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC--C----CCccEEEec
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA--I----PPADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~--~----p~~D~i~~~  262 (307)
                      +.++.+|||+|||+|.++..+++.. |+-+++++|+ |.+++.+++   ....+..+..|...+  .    +.+|++++ 
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~-  149 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE-  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence            6778999999999999999999975 7789999999 888888876   456688888888763  1    13566554 


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                       .+++.++  ...+++++++.|||   ||+++|....
T Consensus       150 -d~~~~~~--~~~~l~~~~~~Lkp---gG~lvi~~ka  180 (227)
T d1g8aa_         150 -DVAQPTQ--AKILIDNAEVYLKR---GGYGMIAVKS  180 (227)
T ss_dssp             -CCCSTTH--HHHHHHHHHHHEEE---EEEEEEEEEG
T ss_pred             -Eccccch--HHHHHHHHHHhccc---CCeEEEEEEC
Confidence             3443333  45789999999999   8998887543

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.91  E-value=2.1e-09  Score=87.68  Aligned_cols=114  Identities=18%  Similarity=0.235  Sum_probs=86.9

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC------
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE------  251 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~------  251 (307)
                      .++++..+.  ..+...+||++||+|.++..+++.+|+.+++++|. +.+++.+++    ..+|++++.++|.+      
T Consensus        12 l~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~   89 (192)
T d1m6ya2          12 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK   89 (192)
T ss_dssp             HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred             HHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence            355666555  56678999999999999999999999999999999 899999887    57899999999875      


Q ss_pred             CC--CCccEEEechhhc----cCCh---hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          252 AI--PPADAVVLKWILH----DWND---EECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       252 ~~--p~~D~i~~~~vLh----~~~~---~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                      ..  ..+|.|++---+.    +.++   ......|..+.++|+|   ||+++|+.+-..
T Consensus        90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~---gG~l~ii~f~s~  145 (192)
T d1m6ya2          90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP---GGRIVVISFHSL  145 (192)
T ss_dssp             HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE---EEEEEEEESSHH
T ss_pred             HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC---CCeeeeeccccH
Confidence            12  2578776542210    1111   1235788999999998   999999876543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.79  E-value=9e-09  Score=85.27  Aligned_cols=98  Identities=18%  Similarity=0.272  Sum_probs=78.3

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---C
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP---P  255 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p---~  255 (307)
                      .++..++  +.+..+|||||||+|+.+..+++... .+++++|. +++++.+++     ..+++.++.+|..+-.|   .
T Consensus        69 ~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p  145 (215)
T d1jg1a_          69 IMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP  145 (215)
T ss_dssp             HHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhhc--cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence            3455555  67788999999999999999888753 56888998 788888876     46899999999988433   5


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ||.|++.-.++..|+.        +.+.|++   ||++++.
T Consensus       146 fD~Iiv~~a~~~ip~~--------l~~qL~~---gGrLv~p  175 (215)
T d1jg1a_         146 YDVIIVTAGAPKIPEP--------LIEQLKI---GGKLIIP  175 (215)
T ss_dssp             EEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred             ceeEEeecccccCCHH--------HHHhcCC---CCEEEEE
Confidence            9999999999877753        3456898   8998864

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.73  E-value=1.2e-08  Score=86.96  Aligned_cols=98  Identities=12%  Similarity=0.040  Sum_probs=76.6

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEechh
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLKWI  264 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~~v  264 (307)
                      ..+..+|||+|||+|.++..+++.. ..+++++|+ |..++.+++      ..++|+++++|.++-.+  .+|.|++.-.
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p  183 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  183 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             cCCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence            3567899999999999999999874 569999999 888888776      57889999999988333  4998887522


Q ss_pred             hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127          265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~  301 (307)
                          +  .+..+|..+.+.+++   ||.|.+.+.+..
T Consensus       184 ----~--~~~~~l~~a~~~l~~---gG~lh~~~~~~~  211 (260)
T d2frna1         184 ----V--RTHEFIPKALSIAKD---GAIIHYHNTVPE  211 (260)
T ss_dssp             ----S--SGGGGHHHHHHHEEE---EEEEEEEEEEEG
T ss_pred             ----C--chHHHHHHHHhhcCC---CCEEEEEecccc
Confidence                1  124678888999998   888877665543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.73  E-value=2.3e-08  Score=83.27  Aligned_cols=92  Identities=20%  Similarity=0.262  Sum_probs=73.7

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHH------CCCCeEEEecc-hHHHHhchh----------cCCCeEEEecCCCCCCC--
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKA------FPNLECTDFDL-PHVVNGLES----------DLANLKYVGGDMFEAIP--  254 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~------~p~~~~~~~Dl-~~~~~~a~~----------~~~rv~~~~~d~~~~~p--  254 (307)
                      +.+..+|||||||+|+++..+++.      .+..+++.+|. ++.++.+++          ...+|.+..+|..+..+  
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~  157 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  157 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence            567889999999999999888776      34568999998 778877764          24689999999987433  


Q ss_pred             -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                       .||.|++...++..|+.        +.+.|++   ||++++.
T Consensus       158 ~~fD~Iiv~~a~~~~p~~--------l~~~Lk~---gG~lV~p  189 (223)
T d1r18a_         158 APYNAIHVGAAAPDTPTE--------LINQLAS---GGRLIVP  189 (223)
T ss_dssp             CSEEEEEECSCBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred             cceeeEEEEeechhchHH--------HHHhcCC---CcEEEEE
Confidence             59999999999877752        4578998   8999874

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.60  E-value=9.2e-08  Score=74.71  Aligned_cols=96  Identities=9%  Similarity=0.024  Sum_probs=70.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC----CCCccEEEechh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA----IPPADAVVLKWI  264 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~----~p~~D~i~~~~v  264 (307)
                      ..++|||+|||+|.++.+.+.+... +++.+|. +.+++.+++      ..++++++.+|..+.    ...||+|++.=.
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP   92 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP   92 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence            4679999999999999999887654 8999999 888887766      467899999998762    235999987532


Q ss_pred             hccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeee
Q 037127          265 LHDWNDEECVKILKKCKE--AITSNSKIGKVIIIDMM  299 (307)
Q Consensus       265 Lh~~~~~~~~~~L~~~~~--~L~p~~~gg~lli~e~~  299 (307)
                         |.......+|..+.+  .|+|   +|. +++|.-
T Consensus        93 ---y~~~~~~~~l~~i~~~~~L~~---~g~-iiiE~~  122 (152)
T d2esra1          93 ---YAKETIVATIEALAAKNLLSE---QVM-VVCETD  122 (152)
T ss_dssp             ---SHHHHHHHHHHHHHHTTCEEE---EEE-EEEEEE
T ss_pred             ---hccchHHHHHHHHHHCCCcCC---CeE-EEEEeC
Confidence               223344566666654  4787   454 556643

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.52  E-value=7.5e-08  Score=78.37  Aligned_cols=66  Identities=20%  Similarity=0.300  Sum_probs=55.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCCCccEEEec
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIPPADAVVLK  262 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p~~D~i~~~  262 (307)
                      .+++|||+|||+|.++..++...+ .+++++|. +.+++.+++...+++++.+|+.+....||+|+++
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~N  114 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMN  114 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEEC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeC
Confidence            367999999999999988887654 47999999 8888888876778999999997743469999876

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=7.6e-08  Score=79.56  Aligned_cols=100  Identities=14%  Similarity=0.105  Sum_probs=73.5

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC---------CCc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI---------PPA  256 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~---------p~~  256 (307)
                      ..++++||+||||+|..+..+++..+ +.+++.+|. +...+.+++      ..++|+++.||..+-.         ..+
T Consensus        54 ~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          54 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence            35678999999999999999999875 589999999 778887765      5688999999986521         248


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      |++++-   |+.........+.++.+.|+|   || ++|+|-++
T Consensus       134 D~ifiD---~~~~~~~~~~~l~~~~~lLkp---GG-vIv~Ddvl  170 (214)
T d2cl5a1         134 DMVFLD---HWKDRYLPDTLLLEKCGLLRK---GT-VLLADNVI  170 (214)
T ss_dssp             EEEEEC---SCGGGHHHHHHHHHHTTCEEE---EE-EEEESCCC
T ss_pred             ceeeec---ccccccccHHHHHHHhCccCC---Cc-EEEEeCcC
Confidence            988876   222222223446677788998   55 55666554

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.38  E-value=3.3e-07  Score=80.47  Aligned_cols=100  Identities=19%  Similarity=0.131  Sum_probs=75.1

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-------CCCccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-------IPPADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-------~p~~D~i~  260 (307)
                      ++..+|||++||+|.++..+++... .+++++|+ +..++.+++      ..++++++.+|+++.       -..||+|+
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  222 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence            5578999999999999999998753 48999999 888888876      457899999998862       12599999


Q ss_pred             echhhccCCh---h----HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          261 LKWILHDWND---E----ECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       261 ~~~vLh~~~~---~----~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +.-.-..-..   .    .-.++++.+.+.|+|   ||.|+....
T Consensus       223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p---GG~lv~~s~  264 (324)
T d2as0a2         223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC  264 (324)
T ss_dssp             ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred             cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEeC
Confidence            8543221111   1    124588889999999   888877653

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5.5e-07  Score=74.45  Aligned_cols=99  Identities=16%  Similarity=0.230  Sum_probs=76.0

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---------CCCc
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---------IPPA  256 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---------~p~~  256 (307)
                      ..++++||+||||+|+.+..+++..| +.+++.+|. +...+.|++      ..++++++.||..+.         ...|
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            45688999999999999999999986 689999999 777777776      578999999997651         1259


Q ss_pred             cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR  300 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~  300 (307)
                      |+|++..     +.+.-...+..+.+.|+|   ||.|++-+..+
T Consensus       137 D~ifiD~-----dk~~y~~~~~~~~~lL~~---GGvii~Dn~l~  172 (219)
T d2avda1         137 DVAVVDA-----DKENCSAYYERCLQLLRP---GGILAVLRVLW  172 (219)
T ss_dssp             EEEEECS-----CSTTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred             cEEEEeC-----CHHHHHHHHHHHHHHhcC---CcEEEEeCCcc
Confidence            9998853     222345778889999998   55555544443

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.35  E-value=4.8e-07  Score=78.84  Aligned_cols=99  Identities=16%  Similarity=0.138  Sum_probs=76.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----------cCCCeEEEecCCCC---CCC-CccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----------DLANLKYVGGDMFE---AIP-PADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~~rv~~~~~d~~~---~~p-~~D~i  259 (307)
                      +.+++||.||+|.|..+.++++..|..+++++|+ |.|++.+++          ..+|++++.+|.++   ..+ .||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            4678999999999999999999888889999999 889988876          35799999999987   233 59999


Q ss_pred             Eechh--hc-cCChh--HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          260 VLKWI--LH-DWNDE--ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       260 ~~~~v--Lh-~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ++-..  .. .-+..  -...+++.+++.|+|   ||.+++.
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gvlv~~  194 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQ  194 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCC---CceEEEe
Confidence            86432  11 00111  125789999999999   7766654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=8e-07  Score=75.72  Aligned_cols=67  Identities=16%  Similarity=0.323  Sum_probs=56.5

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC----CccEEEec
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP----PADAVVLK  262 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p----~~D~i~~~  262 (307)
                      .+..+++|+|||+|..+..+++ +|+.+++++|. +..++.|++      ...++.++.+|++++.+    .||+|+++
T Consensus       109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence            3456899999999999999875 79999999999 888888876      56789999999998543    58998876

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.34  E-value=9.6e-07  Score=72.02  Aligned_cols=69  Identities=19%  Similarity=0.133  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCCCccEEEechhh
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIPPADAVVLKWIL  265 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p~~D~i~~~~vL  265 (307)
                      .+++|||+|||+|.++..++.+. ..+++++|. +.+++.+++    ...++++..+|..+....+|+|++.=..
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPF  119 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCC
T ss_pred             CCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcc
Confidence            45799999999999999888764 358999999 788888776    5668899999987744469999876443

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.5e-06  Score=71.91  Aligned_cols=72  Identities=10%  Similarity=-0.002  Sum_probs=59.0

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC----C---C--CccE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA----I---P--PADA  258 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~----~---p--~~D~  258 (307)
                      ....++||||||+|..+..|++++|+++++++|+ +.+++.|++      ..+|+.+...+....    .   .  .||+
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            4457899999999999999999999999999999 888888887      688999988654431    1   1  3899


Q ss_pred             EEechhhc
Q 037127          259 VVLKWILH  266 (307)
Q Consensus       259 i~~~~vLh  266 (307)
                      |+++=..+
T Consensus       140 ivsNPPY~  147 (250)
T d2h00a1         140 CMCNPPFF  147 (250)
T ss_dssp             EEECCCCC
T ss_pred             EEecCccc
Confidence            98876655

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.28  E-value=6.4e-07  Score=77.24  Aligned_cols=99  Identities=12%  Similarity=0.107  Sum_probs=75.5

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---CCC-CccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AIP-PADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~p-~~D~i~  260 (307)
                      ..+++||-||+|.|..+.++++..|..+++++|+ |.|++.+++         ..+|++++.+|.++   ..+ .||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            4678999999999999999999877788999999 889998876         36899999999876   223 599998


Q ss_pred             echhhccC-Chh--HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          261 LKWILHDW-NDE--ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       261 ~~~vLh~~-~~~--~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +--.-..- +..  -...+++.+++.|+|   ||.+++.
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~---~Gi~v~q  203 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE  203 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCC---CcEEEEe
Confidence            75332211 110  025889999999999   7776654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.26  E-value=7.9e-07  Score=77.73  Aligned_cols=98  Identities=16%  Similarity=0.114  Sum_probs=73.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC------C-CCccEEEec
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA------I-PPADAVVLK  262 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~------~-p~~D~i~~~  262 (307)
                      ..++|||++||+|.++..+++.  ..+++++|. +.+++.+++     ..++++++.+|.++.      . ..||+|++.
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            4679999999999999998875  568999999 888888876     346899999998761      1 259999985


Q ss_pred             hhhccCChh-------HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          263 WILHDWNDE-------ECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       263 ~vLh~~~~~-------~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      -.-.--+..       .-.++++.+.+.|+|   ||.|+....
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp---GG~Lv~~sc  262 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC  262 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEeC
Confidence            432111111       124688999999999   888776543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.26  E-value=1.2e-06  Score=74.79  Aligned_cols=99  Identities=16%  Similarity=0.088  Sum_probs=76.4

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---CCC-CccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AIP-PADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~p-~~D~i~  260 (307)
                      ..+++||-||+|.|..+.++++..|..+++++|+ |.|++.+++         ..+|++++.+|...   ..+ .||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            4678999999999999999999878789999999 899998876         36799999999876   222 599998


Q ss_pred             echhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          261 LKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       261 ~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +--.-..-+..  -...+++.+++.|+|   +|.++..
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~---~Gv~v~q  188 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ  188 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCC---CceEEEe
Confidence            66432110000  024789999999998   7776654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.23  E-value=1e-06  Score=75.48  Aligned_cols=97  Identities=13%  Similarity=0.145  Sum_probs=73.8

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------------cCCCeEEEecCCCC---CCCC
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------------DLANLKYVGGDMFE---AIPP  255 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------------~~~rv~~~~~d~~~---~~p~  255 (307)
                      .++++||.||||.|..+.++++ +|..+++++|+ |.|++.+++               ..+|++++.+|.++   ....
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            5678999999999999999987 56678999999 899998875               15799999999875   2346


Q ss_pred             ccEEEechhhccCChhH---HHHHHHHHHHhccCCCCCcEEEEE
Q 037127          256 ADAVVLKWILHDWNDEE---CVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~---~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      ||+|++--.-. .....   ...+++.+++.|+|   +|.+++.
T Consensus       150 yDvIi~D~~~~-~~~~~~L~t~eF~~~~~~~L~~---~Gv~v~q  189 (276)
T d1mjfa_         150 FDVIIADSTDP-VGPAKVLFSEEFYRYVYDALNN---PGIYVTQ  189 (276)
T ss_dssp             EEEEEEECCCC-C-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             CCEEEEeCCCC-CCCcccccCHHHHHhhHhhcCC---CceEEEe
Confidence            99998754322 21111   25789999999999   7776654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.2e-06  Score=75.21  Aligned_cols=98  Identities=15%  Similarity=0.135  Sum_probs=75.3

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---CCC-CccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AIP-PADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~p-~~D~i~  260 (307)
                      ..+++||-||+|.|..+.++++..+..+++++|+ |.|++.+++         ..+|++++.+|.++   ..+ .||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            5678999999999999999998877889999999 999999976         36899999999876   233 599998


Q ss_pred             echhhccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          261 LKWILHDWNDE---ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       261 ~~~vLh~~~~~---~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +--.- .....   -...+++.+++.|+|   ||.+++.
T Consensus       157 ~D~~~-p~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q  191 (285)
T d2o07a1         157 TDSSD-PMGPAESLFKESYYQLMKTALKE---DGVLCCQ  191 (285)
T ss_dssp             EECC------------CHHHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCC-CCCcccccccHHHHHHHHHhcCC---CCeEEEe
Confidence            76322 11111   123689999999998   7776654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.16  E-value=1.7e-06  Score=74.98  Aligned_cols=99  Identities=15%  Similarity=0.127  Sum_probs=73.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---C-CCCccEEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---A-IPPADAVV  260 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~-~p~~D~i~  260 (307)
                      ..+++||-||+|.|..+.++++..|-.+++++|+ |.|++.+++         ..+|++++.+|..+   . ...||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            4678999999999999999999777678999999 889998877         25899999999887   2 23599998


Q ss_pred             echhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          261 LKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       261 ~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      +--.-..-+..  -...+++.+++.|+|   ||.++..
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~---~Gi~v~q  219 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQ  219 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCC---CcEEEEe
Confidence            75432111111  135789999999999   7776664

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.16  E-value=2.1e-06  Score=73.92  Aligned_cols=100  Identities=16%  Similarity=0.123  Sum_probs=76.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---CCC--CccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AIP--PADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~p--~~D~i  259 (307)
                      +++++||=||+|.|..+.++++..|-.+++++|+ |.|++.+++         ..+|++++.+|.++   ..+  .||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            5678999999999999999999777678999999 889998877         37999999999775   233  59999


Q ss_pred             EechhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          260 VLKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       260 ~~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      +.--.=..-+..  -...+++.+++.|+|   ||.+++.-
T Consensus       159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q~  195 (290)
T d1xj5a_         159 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQA  195 (290)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEEC
T ss_pred             EEcCCCCCCcchhhCCHHHHHHHHHhcCC---CcEEEEec
Confidence            864321111111  125789999999999   77776653

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.15  E-value=2e-06  Score=68.24  Aligned_cols=95  Identities=12%  Similarity=0.079  Sum_probs=62.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-----CCCCccEEEe
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-----AIPPADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-----~~p~~D~i~~  261 (307)
                      .....+|||+|||+|.++.+.+.+  +.+++.+|. +.+++.+++      ...++.....|.+.     ....||+|++
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence            345679999999999999998887  468889999 888888776      45566666665442     1225999987


Q ss_pred             chhhccCChhHHHHHHHHHH--HhccCCCCCcEEEEEee
Q 037127          262 KWILHDWNDEECVKILKKCK--EAITSNSKIGKVIIIDM  298 (307)
Q Consensus       262 ~~vLh~~~~~~~~~~L~~~~--~~L~p~~~gg~lli~e~  298 (307)
                      .=..+ ....   .++..+.  ..|+|   || ++++|.
T Consensus       117 DPPY~-~~~~---~~l~~l~~~~ll~~---~g-~ivie~  147 (171)
T d1ws6a1         117 APPYA-MDLA---ALFGELLASGLVEA---GG-LYVLQH  147 (171)
T ss_dssp             CCCTT-SCTT---HHHHHHHHHTCEEE---EE-EEEEEE
T ss_pred             ccccc-cCHH---HHHHHHHHcCCcCC---Ce-EEEEEe
Confidence            53322 2222   2333332  45787   55 555554

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=4.3e-06  Score=66.96  Aligned_cols=95  Identities=12%  Similarity=0.139  Sum_probs=69.1

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC--C-C-CCccEEEechhhc
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE--A-I-PPADAVVLKWILH  266 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~--~-~-p~~D~i~~~~vLh  266 (307)
                      ..+|||++||+|.++.+.+.+... +++.+|. +.+++.+++     ...+++++.+|.++  . . ..||+|++.=.. 
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY-  121 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF-  121 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS-
T ss_pred             hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc-
Confidence            568999999999999999988654 8999999 778887776     45678999999876  2 2 259999987442 


Q ss_pred             cCChhHHHHHHHHHHH--hccCCCCCcEEEEEeee
Q 037127          267 DWNDEECVKILKKCKE--AITSNSKIGKVIIIDMM  299 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~--~L~p~~~gg~lli~e~~  299 (307)
                        .......++..+.+  .|++    +.++|+|.-
T Consensus       122 --~~~~~~~~l~~l~~~~~L~~----~~iIiiE~~  150 (183)
T d2fpoa1         122 --RRGLLEETINLLEDNGWLAD----EALIYVESE  150 (183)
T ss_dssp             --STTTHHHHHHHHHHTTCEEE----EEEEEEEEE
T ss_pred             --ccchHHHHHHHHHHCCCCCC----CeEEEEEec
Confidence              23333456666655  4787    456666643

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.14  E-value=2.7e-06  Score=73.62  Aligned_cols=100  Identities=15%  Similarity=0.212  Sum_probs=72.0

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCCC-------CCCccE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEA-------IPPADA  258 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~-------~p~~D~  258 (307)
                      ..+..+|||+.||+|.++..+++.  +.+++.+|. +..++.|++       ...+++|+++|+++-       -..||+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            345779999999999999999886  568999999 788888876       234799999999862       124999


Q ss_pred             EEechh---h---c-cCCh-hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          259 VVLKWI---L---H-DWND-EECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       259 i~~~~v---L---h-~~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      |++.=.   -   + .|.- +....+++.+.+.|+|   ||.++++..
T Consensus       208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~---~g~~ll~t~  252 (309)
T d2igta1         208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTA  252 (309)
T ss_dssp             EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEE
T ss_pred             EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCC---CCCEEEEec
Confidence            997311   1   0 1222 2234567778888888   776665543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.08  E-value=2.4e-06  Score=70.87  Aligned_cols=98  Identities=12%  Similarity=0.104  Sum_probs=75.4

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC----------CCC
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA----------IPP  255 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~----------~p~  255 (307)
                      ..++++||+||+++|+.+..+++..| +.+++.+|. |...+.|++      ..++|+++.++..+-          ...
T Consensus        57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            45688999999999999999999987 579999998 777777776      577999999998752          124


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      ||+|++-.     ....-...+..+.+.|+|   ||.|++-+..
T Consensus       137 fD~iFiDa-----~k~~y~~~~e~~~~ll~~---gGiii~DNvl  172 (227)
T d1susa1         137 YDFIFVDA-----DKDNYLNYHKRLIDLVKV---GGVIGYDNTL  172 (227)
T ss_dssp             BSEEEECS-----CSTTHHHHHHHHHHHBCT---TCCEEEETTT
T ss_pred             eeEEEecc-----chhhhHHHHHHHHhhcCC---CcEEEEccCC
Confidence            99998853     222346788889999998   5555544443

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.05  E-value=1.4e-05  Score=66.46  Aligned_cols=91  Identities=12%  Similarity=0.276  Sum_probs=67.2

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC-c
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP-A  256 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~-~  256 (307)
                      .+.+++..+  .....+||+||||+|.++..|++..  .+++++|+ +..++.+++   ..++++++.+|+++ +.+. .
T Consensus        10 ~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~   85 (235)
T d1qama_          10 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ   85 (235)
T ss_dssp             HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccc
Confidence            455666665  6778899999999999999999984  47888998 777777765   46799999999998 5553 3


Q ss_pred             cEEEechhhccCChhHHHHHHHHHH
Q 037127          257 DAVVLKWILHDWNDEECVKILKKCK  281 (307)
Q Consensus       257 D~i~~~~vLh~~~~~~~~~~L~~~~  281 (307)
                      ...+.++.=++.+    ..+|.++.
T Consensus        86 ~~~vv~NLPYnIs----s~il~~ll  106 (235)
T d1qama_          86 SYKIFGNIPYNIS----TDIIRKIV  106 (235)
T ss_dssp             CCEEEEECCGGGH----HHHHHHHH
T ss_pred             cceeeeeehhhhh----HHHHHHHH
Confidence            3444555544444    35666664

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.00  E-value=5.2e-06  Score=72.30  Aligned_cols=99  Identities=17%  Similarity=0.161  Sum_probs=71.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCCC------CC-CccEE
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEA------IP-PADAV  259 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~------~p-~~D~i  259 (307)
                      ...++|||+.||+|.++..++... ..+++.+|+ +..++.+++       ...+++|+.+|.++.      .. .||+|
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            457799999999999999877752 347999999 777777765       246899999999762      22 49999


Q ss_pred             Eechhh------ccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          260 VLKWIL------HDWND-EECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       260 ~~~~vL------h~~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ++-=.-      .-+.- .+-.++++.+.+.|+|   ||.|++.-
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~p---gG~l~~~s  263 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST  263 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence            984211      11111 1235799999999999   77777644

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.98  E-value=4.7e-06  Score=69.85  Aligned_cols=85  Identities=14%  Similarity=0.273  Sum_probs=66.2

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC-c
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP-A  256 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~-~  256 (307)
                      ...+++..+  ..+..+||+||||+|.++..|++.  ..+++++|+ +.+++.+++   ..++++++.+|+.+ +.+. .
T Consensus        18 i~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~   93 (245)
T d1yuba_          18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccce
Confidence            456777666  677889999999999999999998  457899999 666666665   35789999999998 6663 4


Q ss_pred             cEEEechhhccCChh
Q 037127          257 DAVVLKWILHDWNDE  271 (307)
Q Consensus       257 D~i~~~~vLh~~~~~  271 (307)
                      ...++++.=++.+.+
T Consensus        94 ~~~vv~NLPY~Ist~  108 (245)
T d1yuba_          94 RYKIVGNIPYHLSTQ  108 (245)
T ss_dssp             EEEEEEECCSSSCHH
T ss_pred             eeeEeeeeehhhhHH
Confidence            555667777778764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.94  E-value=1.9e-05  Score=63.01  Aligned_cols=109  Identities=18%  Similarity=0.264  Sum_probs=80.6

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-C-----C-
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-A-----I-  253 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~-----~-  253 (307)
                      .++++..+.  ......+||..+|.|+++..+++.  +.+++++|. |.+++.++. ..+|+.++.+++.+ .     . 
T Consensus         7 l~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~   82 (182)
T d1wg8a2           7 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG   82 (182)
T ss_dssp             HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence            355665555  566789999999999999999997  468999999 888888877 67899999998876 1     2 


Q ss_pred             -CCccEEEec-----hhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          254 -PPADAVVLK-----WILHDWNDE--ECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       254 -p~~D~i~~~-----~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                       ..+|.|++-     +-|.+-..+  .....|......+++   ||+++|+.+
T Consensus        83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~---gg~~~ii~f  132 (182)
T d1wg8a2          83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP---GGRLVVIAF  132 (182)
T ss_dssp             CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC---CCeEEEEec
Confidence             247777653     333322111  234578888999998   899998875

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.91  E-value=2.8e-06  Score=57.73  Aligned_cols=57  Identities=19%  Similarity=0.385  Sum_probs=48.5

Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      +.|++.+...+.|.|+.|||+.+|+   +...+.|+|..|...|++++.+          +++|.+++..
T Consensus         8 l~IL~~~a~~~~~~s~~eia~~~~~---~~st~~rll~tL~~~g~l~~~~----------~g~y~lG~~l   64 (75)
T d1mkma1           8 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK----------DKRYVPGYKL   64 (75)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT----------TSCEEECTHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC----------CCCEeecHHH
Confidence            3456667665689999999999999   6799999999999999999985          5889999754

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.89  E-value=2e-05  Score=68.64  Aligned_cols=101  Identities=11%  Similarity=0.142  Sum_probs=73.2

Q ss_pred             cCCCeEEEecCCchHHHHHHHHH-----CCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--CccEEEec
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKA-----FPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVVLK  262 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~-----~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~i~~~  262 (307)
                      ....+|+|.+||+|.++..+.++     .++.+++++|+ +.++..|+.    ......+..+|.+...+  .||+|++.
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N  195 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  195 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence            44578999999999999998754     34557999999 777776664    46678888888877443  59999887


Q ss_pred             hhhccC-Chh---------------HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          263 WILHDW-NDE---------------ECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       263 ~vLh~~-~~~---------------~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      =..... .++               --..++.++.+.|+|   ||++.++-+
T Consensus       196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~~I~p  244 (328)
T d2f8la1         196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP  244 (328)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC---CCceEEEec
Confidence            544211 111               123479999999999   898776544

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.85  E-value=2.3e-05  Score=62.48  Aligned_cols=98  Identities=16%  Similarity=0.071  Sum_probs=71.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-------CCCccEEEe
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-------IPPADAVVL  261 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-------~p~~D~i~~  261 (307)
                      ...+|||+.||+|.++.+.+.+.. .+++.+|. +.+++.+++      ..++++++.+|.++-       ...||+|++
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence            467999999999999999999854 37999999 777777765      456899999998751       125999987


Q ss_pred             chhhccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeeecC
Q 037127          262 KWILHDWNDEECVKILKKCKE--AITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       262 ~~vLh~~~~~~~~~~L~~~~~--~L~p~~~gg~lli~e~~~~  301 (307)
                      -=.-   .......+|..+.+  .|++   + .++|+|.-..
T Consensus       120 DPPY---~~~~~~~~l~~i~~~~~L~~---~-giIi~E~~~~  154 (182)
T d2fhpa1         120 DPPY---AKQEIVSQLEKMLERQLLTN---E-AVIVCETDKT  154 (182)
T ss_dssp             CCCG---GGCCHHHHHHHHHHTTCEEE---E-EEEEEEEETT
T ss_pred             chhh---hhhHHHHHHHHHHHCCCCCC---C-EEEEEEcCCC
Confidence            5432   22234567777765  4787   4 4667776443

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=3.5e-05  Score=62.61  Aligned_cols=92  Identities=21%  Similarity=0.252  Sum_probs=70.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC--CCCccEEEechhhcc
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA--IPPADAVVLKWILHD  267 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~--~p~~D~i~~~~vLh~  267 (307)
                      ...+++|||+|.|.=+..++-.+|+.+++.+|. ..=+...+.     ..++++.++....+.  ...||+|+++-+-. 
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~~-  143 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFAS-  143 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSSS-
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhcC-
Confidence            356899999999999999999999999999998 333333332     457899999988873  23599887766532 


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          268 WNDEECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                           ...++.-+...+++   +|++++.
T Consensus       144 -----~~~ll~~~~~~l~~---~g~~~~~  164 (207)
T d1jsxa_         144 -----LNDMVSWCHHLPGE---QGRFYAL  164 (207)
T ss_dssp             -----HHHHHHHHTTSEEE---EEEEEEE
T ss_pred             -----HHHHHHHHHHhcCC---CcEEEEE
Confidence                 23677777888888   8888876

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.83  E-value=2.6e-05  Score=63.62  Aligned_cols=106  Identities=10%  Similarity=0.077  Sum_probs=72.2

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccE
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADA  258 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~  258 (307)
                      ++.++..+.  .....+|+|.|||+|.++..+.++.+. .+++++|+ +....    ...+..+..+|++...+  .+|+
T Consensus         8 ~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~----~~~~~~~~~~~~~~~~~~~~fd~   81 (223)
T d2ih2a1           8 VDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD----LPPWAEGILADFLLWEPGEAFDL   81 (223)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC----CCTTEEEEESCGGGCCCSSCEEE
T ss_pred             HHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh----hcccceeeeeehhccccccccce
Confidence            344445444  456679999999999999999877665 56999998 43322    33467788888887433  5898


Q ss_pred             EEechhhccCC--h-------------------------hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          259 VVLKWILHDWN--D-------------------------EECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       259 i~~~~vLh~~~--~-------------------------~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      ++..-......  .                         +-...++.++.+.|++   ||++.++-
T Consensus        82 ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~---~G~~~~I~  144 (223)
T d2ih2a1          82 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVV  144 (223)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc---CCceEEEE
Confidence            88765432100  0                         0124678889999998   89987764

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.46  E-value=0.00026  Score=58.34  Aligned_cols=97  Identities=14%  Similarity=0.101  Sum_probs=65.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHH----CCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC-----CC--CccEEEech
Q 037127          196 GLNSLVDVGGATGTVAKAIAKA----FPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA-----IP--PADAVVLKW  263 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~-----~p--~~D~i~~~~  263 (307)
                      ++++||+||++.|..+..++..    .++.+++++|+ +...........||+++.+|..++     +.  .+|+|++-.
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~  159 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  159 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence            4779999999999877655432    36789999998 433333333678999999997652     11  368777654


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      . |..  +.+...+ ...+.|++   ||.++|-|.+
T Consensus       160 ~-H~~--~~v~~~~-~~~~lLk~---GG~iIveD~i  188 (232)
T d2bm8a1         160 A-HAN--TFNIMKW-AVDHLLEE---GDYFIIEDMI  188 (232)
T ss_dssp             S-CSS--HHHHHHH-HHHHTCCT---TCEEEECSCH
T ss_pred             C-cch--HHHHHHH-HHhcccCc---CCEEEEEcCC
Confidence            3 643  2233334 46678898   8888777764

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.00044  Score=54.64  Aligned_cols=102  Identities=16%  Similarity=0.253  Sum_probs=70.7

Q ss_pred             HHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEecCCCCC-----------
Q 037127          185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGGDMFEA-----------  252 (307)
Q Consensus       185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~-----------  252 (307)
                      ++.+.+. .+.+..+||||||++|.|+..+.+.. +..+++++|+.++    . ..+.+.++.+|+.+.           
T Consensus        12 EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~-~i~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          12 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----D-PIVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             HHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----C-CCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             HHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----c-ccCCceEeecccccchhhhhhhhhcc
Confidence            4556665 35678899999999999999988765 4468999998442    1 456789999999872           


Q ss_pred             CCCccEEEechhhccCC----hh-----HHHHHHHHHHHhccCCCCCcEEEE
Q 037127          253 IPPADAVVLKWILHDWN----DE-----ECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       253 ~p~~D~i~~~~vLh~~~----~~-----~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      ...+|+|+.-..-.--.    |+     -+...|.-+.+.|++   ||.+++
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~---gG~fV~  134 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVV  134 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC---CCcEEE
Confidence            11489988776543211    11     123455666788898   787775

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00035  Score=59.07  Aligned_cols=93  Identities=18%  Similarity=0.252  Sum_probs=65.0

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP  254 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p  254 (307)
                      .+.+++...  .....+||+||+|.|.++..|++..+  ++++++. +..++..++      ..++++++.+|+++ +.|
T Consensus        10 ~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~   85 (278)
T d1zq9a1          10 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   85 (278)
T ss_dssp             HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence            455666655  56677999999999999999999854  7888888 666666654      24689999999998 566


Q ss_pred             CccEEEechhhccCChhHHHHHHHHHHHhc
Q 037127          255 PADAVVLKWILHDWNDEECVKILKKCKEAI  284 (307)
Q Consensus       255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L  284 (307)
                      ....++ ++    .|-.-...++.++...-
T Consensus        86 ~~~~vV-~N----LPY~Iss~il~~~~~~~  110 (278)
T d1zq9a1          86 FFDTCV-AN----LPYQISSPFVFKLLLHR  110 (278)
T ss_dssp             CCSEEE-EE----CCGGGHHHHHHHHHHCS
T ss_pred             hhhhhh-cc----hHHHHHHHHHHHHHhhC
Confidence            555443 33    22222346677665543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.25  E-value=0.00054  Score=56.47  Aligned_cols=107  Identities=12%  Similarity=0.038  Sum_probs=66.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHH---hchh--cCCCeEEEecCCCCCC-C-Cc
Q 037127          184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVN---GLES--DLANLKYVGGDMFEAI-P-PA  256 (307)
Q Consensus       184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~---~a~~--~~~rv~~~~~d~~~~~-p-~~  256 (307)
                      .++.+.+-  +....+|||+|||.|.++..+++..+...+.++++-.-..   ...+  ..+-+++...+-.... + .+
T Consensus        56 ~~~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~  133 (257)
T d2p41a1          56 RWFVERNL--VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC  133 (257)
T ss_dssp             HHHHHTTS--SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred             HHHHHhcC--ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence            34455553  5667789999999999999999887666777777611111   1111  2234577666544433 3 49


Q ss_pred             cEEEechhhccCC----hhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          257 DAVVLKWILHDWN----DEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       257 D~i~~~~vLh~~~----~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                      |+++|-..-+.-+    .....++|.-+.+.|+|   ||-+++
T Consensus       134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~---gg~Fvv  173 (257)
T d2p41a1         134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV  173 (257)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred             CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHccc---CCEEEE
Confidence            9999886533211    11234677777888998   787654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.22  E-value=0.00041  Score=57.25  Aligned_cols=94  Identities=19%  Similarity=0.299  Sum_probs=68.6

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHH---HHhchh--cCCCeEEEecCCCC-----CC-CCccEEEec
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHV---VNGLES--DLANLKYVGGDMFE-----AI-PPADAVVLK  262 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~---~~~a~~--~~~rv~~~~~d~~~-----~~-p~~D~i~~~  262 (307)
                      ....+++|||+|.|.=+.-++=.+|+.+++.+|. ..=   ++.+..  ...++.++...+.+     +. ..||+|+++
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR  148 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence            4567899999999999999999999999999998 332   333322  46788888775532     22 258988887


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      -+-.      ...++.-+...+++   +|++++.-
T Consensus       149 Ava~------l~~ll~~~~~~l~~---~g~~i~~K  174 (239)
T d1xdza_         149 AVAR------LSVLSELCLPLVKK---NGLFVALK  174 (239)
T ss_dssp             CCSC------HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred             hhhC------HHHHHHHHhhhccc---CCEEEEEC
Confidence            5542      24778888888887   78777653

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00018  Score=60.18  Aligned_cols=92  Identities=9%  Similarity=0.099  Sum_probs=63.8

Q ss_pred             HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC--
Q 037127          183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP--  255 (307)
Q Consensus       183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~--  255 (307)
                      .+.+++...  ..+...||+||||.|.++..|++..  .+++++|+ +..++..++   ..++++++.+|+.+ +.+.  
T Consensus        10 ~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~   85 (252)
T d1qyra_          10 IDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA   85 (252)
T ss_dssp             HHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred             HHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccccc
Confidence            345666555  5667889999999999999999974  46888898 777777765   45789999999987 3221  


Q ss_pred             ----ccEEEechhhccCChhHHHHHHHHHHH
Q 037127          256 ----ADAVVLKWILHDWNDEECVKILKKCKE  282 (307)
Q Consensus       256 ----~D~i~~~~vLh~~~~~~~~~~L~~~~~  282 (307)
                          --+.++++.=++.+    ..||.++..
T Consensus        86 ~~~~~~~~vvgNlPY~Is----s~Il~~l~~  112 (252)
T d1qyra_          86 EKMGQPLRVFGNLPYNIS----TPLMFHLFS  112 (252)
T ss_dssp             HHHTSCEEEEEECCTTTH----HHHHHHHHT
T ss_pred             cccCCCeEEEecchHHHH----HHHHHHhcc
Confidence                22445555444443    355655543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.00  E-value=0.0017  Score=51.19  Aligned_cols=97  Identities=14%  Similarity=0.162  Sum_probs=67.0

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCC----C--CCCccEEEec
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFE----A--IPPADAVVLK  262 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~----~--~p~~D~i~~~  262 (307)
                      ..+|||+-||+|.++.+.+.+... +++.+|. +..++..++       ......+...|..+    .  .+.||+|++-
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD  122 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  122 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence            458999999999999999988643 8999999 667666665       23356777776543    1  2259999876


Q ss_pred             hhhccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeeecC
Q 037127          263 WILHDWNDEECVKILKKCKE--AITSNSKIGKVIIIDMMRE  301 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~--~L~p~~~gg~lli~e~~~~  301 (307)
                      =.-.   ......+|..+.+  .|++    +.++|+|.-..
T Consensus       123 PPY~---~~~~~~~l~~l~~~~~L~~----~~liiiE~~~~  156 (183)
T d2ifta1         123 PPFH---FNLAEQAISLLCENNWLKP----NALIYVETEKD  156 (183)
T ss_dssp             CCSS---SCHHHHHHHHHHHTTCEEE----EEEEEEEEESS
T ss_pred             hhHh---hhhHHHHHHHHHHhCCcCC----CcEEEEEecCC
Confidence            4432   2234567777765  5787    56777776443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0013  Score=57.43  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=53.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-------CccEEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-------PADAVV  260 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-------~~D~i~  260 (307)
                      ..+..+|+|+-||+|.++..|++..  .+++++|. ++.++.|++     ...+++|+.+|..+..+       .+|+++
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi  287 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL  287 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred             cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence            4456789999999999999999874  57999999 788888876     56789999999876322       378876


Q ss_pred             ec
Q 037127          261 LK  262 (307)
Q Consensus       261 ~~  262 (307)
                      +.
T Consensus       288 lD  289 (358)
T d1uwva2         288 LD  289 (358)
T ss_dssp             EC
T ss_pred             eC
Confidence            64

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.93  E-value=0.0013  Score=59.01  Aligned_cols=112  Identities=13%  Similarity=0.069  Sum_probs=75.4

Q ss_pred             hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCC-------------CCeEEEecc-hHHHHhchh-------cCC
Q 037127          182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP-------------NLECTDFDL-PHVVNGLES-------DLA  240 (307)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-------------~~~~~~~Dl-~~~~~~a~~-------~~~  240 (307)
                      +++.++..++  .....+|+|-.||+|.++..+.++..             .....++|. +.....++.       ...
T Consensus       150 Iv~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~  227 (425)
T d2okca1         150 LIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD  227 (425)
T ss_dssp             HHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred             hhHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence            3444454444  34567999999999999988876532             134789998 555555543       234


Q ss_pred             CeEEEecCCCCCCC--CccEEEechhhcc-CC--------------hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          241 NLKYVGGDMFEAIP--PADAVVLKWILHD-WN--------------DEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       241 rv~~~~~d~~~~~p--~~D~i~~~~vLh~-~~--------------~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ...+..+|.+...+  .||+|+..=.... +.              ......+|.++.+.|++   ||++.++=+
T Consensus       228 ~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~iI~p  299 (425)
T d2okca1         228 RSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP  299 (425)
T ss_dssp             CCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             cceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC---CCeEEEEec
Confidence            56788899887444  5999887655421 10              11124699999999998   898777644

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.027  Score=48.19  Aligned_cols=104  Identities=17%  Similarity=0.225  Sum_probs=82.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh--------------------------cCCCeEEEecCC
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES--------------------------DLANLKYVGGDM  249 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~--------------------------~~~rv~~~~~d~  249 (307)
                      +...||-+|||.=.....+...+|+++++=+|.|++++.=.+                          ..++..++..|+
T Consensus        96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL  175 (328)
T d1rjda_          96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  175 (328)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence            346799999999888888888899999999999987763111                          246789999999


Q ss_pred             CCC----------C-C-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127          250 FEA----------I-P-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK  303 (307)
Q Consensus       250 ~~~----------~-p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~  303 (307)
                      .+.          + + .+-+++.=-||.+++.+++..+|+.+.+..+.    +.+++.|++.+..
T Consensus       176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~----~~~i~YE~i~~~~  237 (328)
T d1rjda_         176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH----GLWISYDPIGGSQ  237 (328)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCCCS
T ss_pred             CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC----ceEEEeccCCCCC
Confidence            861          1 1 14577888899999999999999999999875    8899999997643

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=96.60  E-value=0.0091  Score=50.58  Aligned_cols=100  Identities=12%  Similarity=0.100  Sum_probs=73.7

Q ss_pred             cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh--------cCCCeEEEecCCCCCC----------C-C
Q 037127          195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES--------DLANLKYVGGDMFEAI----------P-P  255 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~~~----------p-~  255 (307)
                      .+...||.+|||-=.....+ ...++++++=+|+|.+++.-++        ...+..+++.|+.++.          | .
T Consensus        88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA  166 (297)
T ss_dssp             TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence            45677888999977666555 3456788999999999875433        2456788888887631          1 2


Q ss_pred             ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .-++++=.++++++.+++..+|+.+.+...|   |+.| ++|..
T Consensus       167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~---GS~l-~~d~~  206 (297)
T d2uyoa1         167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GSRI-AVETS  206 (297)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TCEE-EEECC
T ss_pred             CEEEEEccccccCCHHHHHHHHHHHHHhCCC---CCEE-EEEec
Confidence            4566777789999999999999999999988   5554 45543

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.56  E-value=0.00035  Score=49.53  Aligned_cols=67  Identities=12%  Similarity=0.139  Sum_probs=52.2

Q ss_pred             HHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchh
Q 037127           34 CAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLL  110 (307)
Q Consensus        34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l  110 (307)
                      .-.++.|+..|... ++.|+.+||+.+++   ....+.+.|+.|...|+++....       .+++   .|++|+.|+..
T Consensus        15 ~p~r~~IL~~L~~~-~~~~~~eLa~~l~i---s~~~vs~~l~~L~~~glV~~~~~-------~~d~r~~~~~LT~~G~~~   83 (100)
T d1ub9a_          15 NPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKV-------IADRPRTVVEITDFGMEE   83 (100)
T ss_dssp             SHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEE-------CSSSCEEEEEECHHHHHH
T ss_pred             CHHHHHHHHHhccC-CCeeHHHHHHHHhh---ccccccHHHHHHhhhceeEEEEc-------CcCCccccccCCHHHHHH
Confidence            34456667777544 68999999999999   68999999999999999997752       1122   49999998754


Q ss_pred             h
Q 037127          111 L  111 (307)
Q Consensus       111 ~  111 (307)
                      .
T Consensus        84 ~   84 (100)
T d1ub9a_          84 A   84 (100)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]

Probab=96.54  E-value=0.00057  Score=48.31  Aligned_cols=55  Identities=15%  Similarity=0.190  Sum_probs=46.9

Q ss_pred             HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127           29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL   88 (307)
Q Consensus        29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~   88 (307)
                      +++|.--.++.|+..|..  ++.++.|||+.+|+   +...+.+.|+.|...|++.....
T Consensus        17 ~kaL~~p~Rl~Il~~L~~--~~~~v~ela~~l~i---s~stvS~HL~~L~~aglV~~~r~   71 (98)
T d1r1ta_          17 FAVLADPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRKQ   71 (98)
T ss_dssp             HHHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             HHHhCCHHHHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE
Confidence            456666667778888865  79999999999999   68999999999999999998873

>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Metal-sensing transcriptional repressor CzrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.45  E-value=0.00054  Score=48.04  Aligned_cols=65  Identities=11%  Similarity=0.179  Sum_probs=51.4

Q ss_pred             HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127           29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN  105 (307)
Q Consensus        29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~  105 (307)
                      +++|.--.++.|+..|..  ++.++.|||+.+|+   +...+.+.|+.|...|++.....+       ..-.|+++.
T Consensus        12 fkaL~d~~Rl~Il~~L~~--~~~~v~el~~~l~~---s~~~vS~HL~~L~~~glv~~~r~G-------~~~~Y~l~~   76 (94)
T d1r1ua_          12 FKALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKRQG-------QSMIYSLDD   76 (94)
T ss_dssp             HHHTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET-------TEEEEEESS
T ss_pred             HHHhCCHHHHHHHHHHHc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCceEEEEEC-------CEEEEEECc
Confidence            445555667777777776  79999999999999   689999999999999999988731       122477774

>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Cadmium efflux system accessory protein CadC
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.24  E-value=0.0016  Score=46.78  Aligned_cols=69  Identities=12%  Similarity=0.093  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127           27 INSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA  106 (307)
Q Consensus        27 ~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~  106 (307)
                      -.+++|..-.++.|+..|... ++.++.|||+.+|+   ....+.+.|+.|...|++.....       |..-.|++++.
T Consensus        23 ~~~kaLadp~Rl~Il~~L~~~-~~~~v~ela~~l~~---s~s~vS~HL~~L~~aGlv~~~r~-------G~~~~Y~l~~~   91 (108)
T d1u2wa1          23 QILKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE-------GKLALYSLGDE   91 (108)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-----------CCEEEESCH
T ss_pred             HHHHHhCCHHHHHHHHHHHhC-CCccHHHHHHHHcc---ChhHHHHHHHHHHHCCeeEEEEE-------CCEEEEEECHH
Confidence            356778888899999888643 78999999999999   68999999999999999999873       12335777653

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.03  E-value=0.0031  Score=40.72  Aligned_cols=55  Identities=22%  Similarity=0.398  Sum_probs=43.2

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCc-eeeeccCCCCCCCCCCCeeecCh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGF-FAQQTLNSSRNNNDEEQGYVLTN  105 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~-l~~~~~~~~~~~~~~~~~y~~t~  105 (307)
                      ...|+..|....+++|..+||+.+++   ..+.++|-+..|...|+ +...           .+.|.+.+
T Consensus         9 ~~~Il~~L~~~~~~vs~~~La~~l~V---S~~TI~rdi~~L~~~G~~I~~~-----------~gGY~L~~   64 (65)
T d1j5ya1           9 LKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT-----------PRGYVLAG   64 (65)
T ss_dssp             HHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE-----------TTEEECCT
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEEe-----------CCCEEeCC
Confidence            34566667554468999999999999   68999999999999998 5544           36888763

>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator YusO
species: Bacillus subtilis [TaxId: 1423]

Probab=95.97  E-value=0.0068  Score=45.31  Aligned_cols=63  Identities=13%  Similarity=0.252  Sum_probs=50.3

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      .++..|... ++.|+.+||+.+++   +...+.+++..|...|++++...       ..++   .+.+|+.|+.+..
T Consensus        39 ~iL~~l~~~-~~~t~~~la~~~~i---~~~~vs~~l~~L~~~glv~r~~~-------~~D~R~~~v~lT~~G~~~~~  104 (143)
T d1s3ja_          39 FVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHN-------TKDRRVIDLSLTDEGDIKFE  104 (143)
T ss_dssp             HHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEC-------SSCTTSEEEEECHHHHHHHH
T ss_pred             HHHHHHHHC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHhhhheeeee-------cCCCCceEEEECHHHHHHHH
Confidence            355566554 68999999999999   68999999999999999998863       2233   4999999986653

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.0096  Score=51.03  Aligned_cols=56  Identities=9%  Similarity=0.109  Sum_probs=45.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE  251 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~  251 (307)
                      ...+|||||.|.|.++..|++...--++++++. +...+..++  ..++++++.+|++.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            456899999999999999998743347999998 666666665  56789999999874

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=95.76  E-value=0.0032  Score=42.99  Aligned_cols=53  Identities=19%  Similarity=0.189  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +++|+.+||+.+++   +...+.++|+.|...|++++...       +-.-.|.+|+.|..+.
T Consensus        20 ~~lt~~eLa~~l~i---~~~~vs~~l~~Le~~GlV~r~~D-------~R~~~i~LT~~G~~~l   72 (85)
T d3ctaa1          20 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVT-------KRGQILNITEKGLDVL   72 (85)
T ss_dssp             EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeecc-------cccccceECHHHHHHH
Confidence            68999999999999   67999999999999999999752       1122488999988554

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=95.72  E-value=0.0027  Score=41.72  Aligned_cols=45  Identities=18%  Similarity=0.327  Sum_probs=38.9

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .|+..|..+ +++|..|||+.+|+   ....+.++++.|...|++.+.+
T Consensus        10 ~Il~~l~~~-g~~sr~eLa~~~gl---S~~Tv~~~l~~L~~~Glv~e~~   54 (71)
T d1z05a1          10 RVYKLIDQK-GPISRIDLSKESEL---APASITKITRELIDAHLIHETT   54 (71)
T ss_dssp             HHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence            456666664 79999999999999   6799999999999999998763

>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: MexR repressor
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.65  E-value=0.012  Score=43.93  Aligned_cols=67  Identities=15%  Similarity=0.218  Sum_probs=50.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++-++..|... ++.|+.+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+.
T Consensus        38 q~~vL~~l~~~-~~~t~~~la~~l~~---~~~~vsr~l~~L~~~G~v~r~~~~~----D~R~~~l~lT~~G~~~~  104 (141)
T d1lnwa_          38 DVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRRERNPS----DQRSFQLFLTDEGLAIH  104 (141)
T ss_dssp             HHHHHHHHHSS-TTCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECSS----SSSSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHCc---cHhHHHHHHHHHHHhhceeeeccCC----CCcchhhccCHHHHHHH
Confidence            44455566554 57999999999999   6899999999999999999886311    01122488999988554

>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Hypothetical protein PH1932
domain: Hypothetical protein PH1932
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.63  E-value=0.0038  Score=49.25  Aligned_cols=55  Identities=15%  Similarity=0.208  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           28 NSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        28 ~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ...+|..-.+..|+..|..  +|.|+.|||+.+|+   ++..+.+.|+.|...|+++...
T Consensus        12 ~~~~l~~p~R~~Il~~L~~--~~~s~~ela~~lg~---s~~~v~~hl~~L~~~glv~~~~   66 (190)
T d1ulya_          12 VIKVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVKR   66 (190)
T ss_dssp             HHHHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence            4567777778888888865  79999999999999   6799999999999999997653

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0042  Score=39.79  Aligned_cols=55  Identities=16%  Similarity=0.239  Sum_probs=43.0

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT  104 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t  104 (307)
                      ++.|+..|.. ++.+|.+|||+.+|+   ....+++-+..|...|+......         +..|+++
T Consensus         7 ~~~iL~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~i~~L~~~G~~I~~~~---------g~GY~L~   61 (63)
T d1biaa1           7 PLKLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP---------GKGYSLP   61 (63)
T ss_dssp             HHHHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET---------TTEEECS
T ss_pred             HHHHHHHHHH-CCcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCcEEEeC---------CCeEEeC
Confidence            3456677765 478999999999999   68999999999999998544432         3468875

>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.42  E-value=0.0051  Score=39.25  Aligned_cols=45  Identities=20%  Similarity=0.319  Sum_probs=39.8

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL   88 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~   88 (307)
                      .|+..|.+  +|+|..|||+.+|+   ....+.++++.|...|++.+.+.
T Consensus         3 ~Il~~i~~--~pisr~eLa~~~gl---s~~TVs~~v~~L~~~GlV~e~~~   47 (62)
T d2hoea1           3 RILKRIMK--SPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEKD   47 (62)
T ss_dssp             CSHHHHHH--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEEC
T ss_pred             HHHHHHHH--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECCC
Confidence            46777876  79999999999999   67899999999999999998753

>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.37  E-value=0.0042  Score=49.28  Aligned_cols=73  Identities=18%  Similarity=0.289  Sum_probs=51.9

Q ss_pred             HHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127           30 MSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL  109 (307)
Q Consensus        30 ~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~  109 (307)
                      ++|..-.+..|+..|..  +|.|+.+||+.+|+   .+..+++.|+.|...|+++......  ..+.....|.++..+..
T Consensus        10 ~~l~~~~R~~Il~~L~~--~~~~~~ela~~l~~---s~~~v~~HL~~L~~~Glv~~~~~~~--~~G~~~~~y~l~~~~~~   82 (194)
T d2p4wa1          10 DVLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKI--PRGRPRKYYMIKKGLRL   82 (194)
T ss_dssp             HHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCB--TTBCCCEEEEECTTEEE
T ss_pred             HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEeec--CCCCceEEEEeccccee
Confidence            33444445566666765  79999999999999   6799999999999999998764211  00111236888887653

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.36  E-value=0.021  Score=49.89  Aligned_cols=94  Identities=13%  Similarity=0.016  Sum_probs=70.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----c---------------CCCeEEEecCCCC---
Q 037127          196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----D---------------LANLKYVGGDMFE---  251 (307)
Q Consensus       196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~---------------~~rv~~~~~d~~~---  251 (307)
                      +..+|||..||+|..+...+++.+..+++..|+ +..++.+++     .               ...+.+.+.|...   
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            467899999999999999988888778999999 777877765     1               1235666667543   


Q ss_pred             CCC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          252 AIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       252 ~~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ... .||+|.+-=    |...  ..+|..+.++++.   ||.|.|.-+
T Consensus       125 ~~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~---~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLDP----FGSP--MEFLDTALRSAKR---RGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEECC----SSCC--HHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             hhcCcCCcccCCC----CCCc--HHHHHHHHHHhcc---CCEEEEEec
Confidence            233 489887764    3333  5799999999997   777777644

>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA3067
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.16  E-value=0.0079  Score=45.08  Aligned_cols=68  Identities=18%  Similarity=0.278  Sum_probs=50.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++.++..|...+|++|+.+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+.
T Consensus        36 q~~vL~~L~~~~g~~t~~~La~~~~~---~~~~vs~~i~~L~~~glv~r~~~~~----DrR~~~i~LT~~G~~~~  103 (145)
T d2hr3a1          36 QLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADPQ----DGRRTRVSLSSEGRRNL  103 (145)
T ss_dssp             HHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC----------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeeeCcc----chhHHHhccCHHHHHHH
Confidence            44455555544468999999999999   6899999999999999999886210    00112599999998654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.031  Score=50.98  Aligned_cols=113  Identities=12%  Similarity=0.056  Sum_probs=69.9

Q ss_pred             hhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCC------------------CCeEEEecc-hHHHHhchh---c
Q 037127          181 LATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP------------------NLECTDFDL-PHVVNGLES---D  238 (307)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p------------------~~~~~~~Dl-~~~~~~a~~---~  238 (307)
                      .+++.+++.+.  .....+|+|-.||+|.++....+...                  .....++|+ +.+...+..   .
T Consensus       151 ~Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l  228 (524)
T d2ar0a1         151 PLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  228 (524)
T ss_dssp             HHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             chhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh
Confidence            34455555444  34456899999999999987765321                  125789999 666555543   1


Q ss_pred             -------CCCeEEEecCCCCC----CCCccEEEechhhcc-C-----------ChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127          239 -------LANLKYVGGDMFEA----IPPADAVVLKWILHD-W-----------NDEECVKILKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       239 -------~~rv~~~~~d~~~~----~p~~D~i~~~~vLh~-~-----------~~~~~~~~L~~~~~~L~p~~~gg~lli  295 (307)
                             ...-.+..++.+..    .+.||+|+..=..-. +           ....-..++.++.+.|++   ||++.|
T Consensus       229 ~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---gGr~ai  305 (524)
T d2ar0a1         229 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAV  305 (524)
T ss_dssp             TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEE
T ss_pred             hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc---cCcEEE
Confidence                   11234555666651    335898876543310 1           011124699999999999   899887


Q ss_pred             Eee
Q 037127          296 IDM  298 (307)
Q Consensus       296 ~e~  298 (307)
                      +=+
T Consensus       306 IlP  308 (524)
T d2ar0a1         306 VVP  308 (524)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            744

>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator OEOE1854
species: Oenococcus oeni [TaxId: 1247]

Probab=95.11  E-value=0.01  Score=43.74  Aligned_cols=67  Identities=18%  Similarity=0.242  Sum_probs=49.2

Q ss_pred             CcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           39 SIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        39 glfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      .++..|..+ |+++|+.+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+.+..
T Consensus        33 ~vL~~l~~~~~~~it~~ela~~~~~---~~~~vs~~l~~L~~~g~v~r~~~~~----D~R~~~i~lT~~G~~~~~  100 (135)
T d3broa1          33 TIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGK----DSRQKCLKLTKKANKLET  100 (135)
T ss_dssp             HHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSS----CTTSEEEEECHHHHTTHH
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHCc---CHhHHHHHHHHHHHHHHHHHHhhhh----hhhhhhhcccHHHHHHHH
Confidence            334444432 367999999999999   6899999999999999999886310    001126999999886653

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.0075  Score=39.41  Aligned_cols=45  Identities=9%  Similarity=0.248  Sum_probs=39.0

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .|+..|..+ +++|..|||+.+|+   ....+.++++.|...|++.+.+
T Consensus         9 ~Il~~i~~~-g~~sr~eLa~~~gL---S~~Tvs~iv~~L~~~glv~e~g   53 (70)
T d1z6ra1           9 AVYRLIDQL-GPVSRIDLSRLAQL---APASITKIVHEMLEAHLVQELE   53 (70)
T ss_dssp             HHHHHHHSS-CSCCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEC-
T ss_pred             HHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence            366777765 89999999999999   6799999999999999998764

>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein ywnA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.91  E-value=0.015  Score=42.54  Aligned_cols=36  Identities=11%  Similarity=0.265  Sum_probs=33.6

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +++|.++||+.+++   ++..++++|+.|...|+++..+
T Consensus        17 ~~~ss~~IA~~~~~---~~~~v~kIl~~L~~aglV~s~r   52 (127)
T d1xd7a_          17 EKTSSEIIADSVNT---NPVVVRRMISLLKKADILTSRA   52 (127)
T ss_dssp             SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCS
T ss_pred             CCCCHHHHHHHhCc---CHHHHHHHHHHHHHhCcccccC
Confidence            68999999999999   6799999999999999999775

>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator TM0816
species: Thermotoga maritima [TaxId: 2336]

Probab=94.81  E-value=0.0085  Score=44.59  Aligned_cols=64  Identities=17%  Similarity=0.202  Sum_probs=51.5

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCC---CeeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEE---QGYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~---~~y~~t~~s~~l~  111 (307)
                      ++-++..|..+ ++.|+.+||+.+++   +...+.++++.|...|++++...       ..+   -.+.+|+.|+.+.
T Consensus        34 q~~iL~~l~~~-~~~t~~~La~~l~i---~~~~vs~~v~~L~~~gli~r~~~-------~~D~R~~~l~lT~~G~~~~  100 (140)
T d2etha1          34 ELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMD-------PVDRRTYRVVLTEKGKEIF  100 (140)
T ss_dssp             HHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEEC-------TTTSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeeec-------ccccchhhhhcCHHHHHHH
Confidence            44456666665 68999999999999   68999999999999999998863       223   2689999998665

>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator MgrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.81  E-value=0.015  Score=42.90  Aligned_cols=64  Identities=17%  Similarity=0.284  Sum_probs=50.1

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|...|++++...       ..++   .+.+|+.|+.+.
T Consensus        36 q~~vL~~i~~~-~~~t~~~la~~l~~---~~~~~s~~l~~L~~~Gli~r~~~-------~~D~R~~~l~lT~~G~~~~  102 (136)
T d2bv6a1          36 QFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERS-------EVDQREVFIHLTDKSETIR  102 (136)
T ss_dssp             HHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEEC-------SSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHcC-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEEeec-------CCcccchhhccCHHHHHHH
Confidence            44455566554 68999999999999   67889999999999999998863       2233   578999998654

>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.63  E-value=0.013  Score=40.29  Aligned_cols=48  Identities=17%  Similarity=0.281  Sum_probs=43.1

Q ss_pred             CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +.+...|...+++   +...+...|..|...|+++..           ++.|.+|+.|..+.
T Consensus        18 g~~kT~i~~~aNL---s~~~~~kyl~~L~~~GLI~~~-----------~~~Y~iT~kG~~~L   65 (90)
T d1r7ja_          18 GSPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQE-----------GKQYMLTKKGEELL   65 (90)
T ss_dssp             CBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-----------TTEEEECHHHHHHH
T ss_pred             CCCccHHHHHcCC---CHHHHHHHHHHHHHCCCeeec-----------CCEEEECccHHHHH
Confidence            4678999999999   689999999999999999876           48999999999655

>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator PA3341
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.62  E-value=0.0082  Score=44.45  Aligned_cols=60  Identities=20%  Similarity=0.349  Sum_probs=46.9

Q ss_pred             ccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           43 IINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        43 ~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      .|..++++.|+.+||+.+++   +...+.++++.|...|++++...       ..++   .+.+|+.|+.+..
T Consensus        36 ~l~~~~~~~t~~~la~~~~~---~~~~vs~~v~~L~~~gli~r~~~-------~~D~R~~~i~lT~~G~~~~~   98 (137)
T d2fbha1          36 HLARHRDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAV-------AEDRRAKHIVLTPKADVLIA   98 (137)
T ss_dssp             HHHHCSSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC-------BTTBCSCEEEECTTHHHHHH
T ss_pred             HHHHcCCCCcHHHHHHHHCC---CHHHHHHHHHHHHHcCCccccCC-------CCCCCchhhhcCHHHHHHHH
Confidence            34333356899999999999   68999999999999999998862       1222   5889998886653

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=94.56  E-value=0.0045  Score=44.19  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=34.0

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +|+|+.+||+.+++   +...+.+.|+.|...|++.+..
T Consensus        35 ~~~t~~eLa~~~~i---~~~tvs~~l~~L~~~GlV~r~~   70 (109)
T d2d1ha1          35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK   70 (109)
T ss_dssp             SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCCCHHHHHHHHCc---cHhHHHHHHHHHHHCCCEEEee
Confidence            78999999999999   6899999999999999999876

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.48  E-value=0.12  Score=43.70  Aligned_cols=100  Identities=13%  Similarity=0.130  Sum_probs=66.8

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CCCccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IPPADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p~~D~i~~~~  263 (307)
                      .....+|||+-+|.|.=+..++.... ...++..|. +.-+..+++     ...++.+...|... +  ...||.|++--
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa  193 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  193 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence            35567999999999998888887765 457899998 444444433     45677777777765 2  22589887721


Q ss_pred             -------------hhccCChhH-------HHHHHHHHHHhccCCCCCcEEEEE
Q 037127          264 -------------ILHDWNDEE-------CVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       264 -------------vLh~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                                   +...|..++       -.++|+++.+.++|   ||+|+-.
T Consensus       194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~---gG~lVYs  243 (313)
T d1ixka_         194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYS  243 (313)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC---CcEEEEe
Confidence                         222233322       25689999999999   7765543

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=94.34  E-value=0.027  Score=35.95  Aligned_cols=36  Identities=11%  Similarity=0.420  Sum_probs=34.3

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .|-++.|||+.+|+   ++..++.+|+.|+..|.+.+..
T Consensus        22 ~PP~vrdl~~~l~~---~e~~~~~lL~~l~~~G~lvkI~   57 (64)
T d1lvaa3          22 QPPSFKEVAGSFNL---DPSELEELLHYLVREGVLVKIN   57 (64)
T ss_dssp             SCCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEESS
T ss_pred             CCCcHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence            79999999999999   7899999999999999999986

>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtcD
species: Bacillus subtilis [TaxId: 1423]

Probab=94.26  E-value=0.024  Score=39.26  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           49 KPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      |+..+.||.+.+ |+   .+..|.+-|+.|...|++++.....    ..-.-.|++|+.|+.+.
T Consensus        23 g~~rF~el~~~l~gi---s~~~Ls~rLk~Le~~glv~r~~~~~----~p~~veY~LT~~G~~L~   79 (95)
T d2hzta1          23 GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQ----VPPKVEYELSEYGRSLE   79 (95)
T ss_dssp             CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECS----SSCEEEEEECTTGGGGH
T ss_pred             CCCCHHHHHHHhhcC---ChhHHHHHHHHHHHhHHHhheeccc----cccchhhhhhhhHHHHH
Confidence            789999999997 88   6799999999999999999875310    00012499999999775

>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator TM0710
species: Thermotoga maritima [TaxId: 2336]

Probab=94.23  E-value=0.012  Score=43.73  Aligned_cols=61  Identities=16%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCC---CeeecChhcchhhc
Q 037127           41 PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEE---QGYVLTNASKLLLK  112 (307)
Q Consensus        41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~---~~y~~t~~s~~l~~  112 (307)
                      +..|... ++.|+.+||+.+++   +...+.+++..|...|++++...       ..+   -.+.+|+.|+.++.
T Consensus        36 L~~i~~~-~~~t~~~la~~l~i---~~~tvs~~l~~L~~~gli~r~~~-------~~D~R~~~i~LT~~G~~~~~   99 (139)
T d2a61a1          36 LQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPD-------PADRRAYFLVITRKGEEVIE   99 (139)
T ss_dssp             HHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHc-CCCCHHHHHHHhCC---CcccchHHHHHHHhcCeeeeeec-------cCCCCeEEEEECHHHHHHHH
Confidence            3344443 68999999999999   67999999999999999998863       112   25899999986653

>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein BC1842
species: Bacillus cereus [TaxId: 1396]

Probab=94.15  E-value=0.018  Score=42.80  Aligned_cols=46  Identities=15%  Similarity=0.217  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA  106 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~  106 (307)
                      .+.|.++||+.+++   ++..++++|..|...||+...+        | .|.|.+...
T Consensus        22 ~~vss~~IA~~~~i---~~~~l~kil~~L~~aGlv~S~r--------G-~GG~~L~~~   67 (138)
T d1ylfa1          22 SLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNR--------G-PGGAGLLKD   67 (138)
T ss_dssp             GGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC------------CCEEESSC
T ss_pred             CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec--------C-CCCceecCC
Confidence            68999999999999   6899999999999999999875        2 477877643

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.92  E-value=0.01  Score=42.33  Aligned_cols=44  Identities=16%  Similarity=0.398  Sum_probs=37.1

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ++.+|... ++.|+.|||+.+|+   +...+.++|+-|...|++.+..
T Consensus        25 v~~~L~~~-g~~t~~eia~~~~i---~~~~v~~~l~~L~~~GlV~r~~   68 (109)
T d1sfxa_          25 IYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI   68 (109)
T ss_dssp             HHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHhc-CCCCHHHHHHHhCC---CcchHHHHHHHHHhCCCEEEEe
Confidence            34444443 79999999999999   6899999999999999998764

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=93.84  E-value=0.6  Score=39.89  Aligned_cols=106  Identities=17%  Similarity=0.277  Sum_probs=70.3

Q ss_pred             cCCCeEEEecCCchHHH--------HHHHHH--------CCCCeEEEecchH-----HHHhchh--cCC---CeEEEecC
Q 037127          195 EGLNSLVDVGGATGTVA--------KAIAKA--------FPNLECTDFDLPH-----VVNGLES--DLA---NLKYVGGD  248 (307)
Q Consensus       195 ~~~~~vlDvGgG~G~~~--------~~l~~~--------~p~~~~~~~Dl~~-----~~~~a~~--~~~---rv~~~~~d  248 (307)
                      .+.-+|.|+||.+|.-+        ..+.+.        -|..++..=|+|.     +....+.  ...   -+.-++|.
T Consensus        50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS  129 (359)
T d1m6ex_          50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence            34577999999999766        233222        3567888889853     2222222  111   14557789


Q ss_pred             CCC-CCC--CccEEEechhhccCCh-------------------h------------HHHHHHHHHHHhccCCCCCcEEE
Q 037127          249 MFE-AIP--PADAVVLKWILHDWND-------------------E------------ECVKILKKCKEAITSNSKIGKVI  294 (307)
Q Consensus       249 ~~~-~~p--~~D~i~~~~vLh~~~~-------------------~------------~~~~~L~~~~~~L~p~~~gg~ll  294 (307)
                      |+. -+|  ..++++++..||-++.                   +            +-..+|+.=++=|.|   ||+++
T Consensus       130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~---GG~mv  206 (359)
T d1m6ex_         130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV  206 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred             hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcEEE
Confidence            988 466  4899999999985431                   1            233577777788888   99999


Q ss_pred             EEeeecCCC
Q 037127          295 IIDMMRENK  303 (307)
Q Consensus       295 i~e~~~~~~  303 (307)
                      ++-..+++.
T Consensus       207 l~~~gr~~~  215 (359)
T d1m6ex_         207 LTILGRRSE  215 (359)
T ss_dssp             EEEEECSSS
T ss_pred             EEEeccCCC
Confidence            988877664

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.2  Score=41.64  Aligned_cols=101  Identities=14%  Similarity=0.157  Sum_probs=67.1

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c-CCCeEEEecCCCCC---CC-CccEEEech
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D-LANLKYVGGDMFEA---IP-PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~-~~rv~~~~~d~~~~---~p-~~D~i~~~~  263 (307)
                      .....+|||+-+|.|.=+..++....+.+++..|. +.=+...++    . ...+.....|....   .+ .||.|++--
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da  179 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  179 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence            45677999999999999999999888888999998 333333332    2 33455555555431   22 489887632


Q ss_pred             -------------hhccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          264 -------------ILHDWNDEE-------CVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       264 -------------vLh~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                                   +...|+..+       -.+||+++.+.++|   ||+|+-..
T Consensus       180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~---gG~lvYsT  230 (284)
T d1sqga2         180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYAT  230 (284)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEE
T ss_pred             cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC---CceEEEee
Confidence                         223444332       25689999999998   77665443

>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ReutB4095-like
domain: Putative DNA-binding protein ReutB4095
species: Ralstonia eutropha [TaxId: 106590]

Probab=93.71  E-value=0.058  Score=35.00  Aligned_cols=55  Identities=16%  Similarity=0.213  Sum_probs=46.7

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      |++-|+..|+++.++   +-..|+|.|-.|.+.|+.+..-      +.++.|+=++|+.|+.+.
T Consensus        22 g~~WSLaklsKra~~---PMS~LRR~LTqL~~aGl~~t~~------~edG~G~A~Lt~~G~~lc   76 (81)
T d2obpa1          22 ATPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSV------EADGRGHASLTQEGAALA   76 (81)
T ss_dssp             CCCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE------CTTSCEEEEECHHHHHHH
T ss_pred             CCCccHHHHHhhcCC---cHHHHHHHHHHHhhcCceeeee------ccCCcceeeccHHHHHHH
Confidence            579999999999999   6899999999999999998764      224567899999988664

>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.66  E-value=0.017  Score=42.80  Aligned_cols=62  Identities=19%  Similarity=0.240  Sum_probs=46.2

Q ss_pred             ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           41 PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      +..|...+++.|..+||+.+++   +...+.++++.|...|++++...       ..++   .+.+|+.|+.+..
T Consensus        37 L~~l~~~~~~~t~~~la~~l~i---~~~~vs~~l~~L~~~glI~~~~~-------~~D~R~~~l~lT~~G~~~~~  101 (140)
T d3deua1          37 LHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTC-------ASDRRAKRIKLTEKAEPLIA  101 (140)
T ss_dssp             HHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC---------------CEEEECGGGHHHHH
T ss_pred             HHHHHHcCCCccHHHHHHHHCC---CHhHHHHHHHHHHhCCCEEeccc-------CCCCCceeeEECHHHHHHHH
Confidence            3344432357999999999999   68999999999999999997762       1223   6999999986653

>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding protein Mj223
domain: DNA-binding protein Mj223
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.61  E-value=0.029  Score=41.95  Aligned_cols=45  Identities=24%  Similarity=0.325  Sum_probs=37.6

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |+-.|..+++|+|+.|||+.+|+   +...+.+.|+.|...|++.+..
T Consensus        31 i~~~L~~~~~plt~~ela~~l~v---sk~~vs~~l~~L~~~GlV~r~~   75 (151)
T d1ku9a_          31 VYAILYLSDKPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW   75 (151)
T ss_dssp             HHHHHHHCSSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHhCCCCcCHHHHHHHhCC---CcchHHHHHHHHHHCCCEEEEE
Confidence            34444434478999999999999   6799999999999999999775

>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.49  E-value=0.022  Score=42.55  Aligned_cols=58  Identities=12%  Similarity=0.160  Sum_probs=47.0

Q ss_pred             ccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           43 IINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        43 ~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      .|..+ +++|..+||+.+++   +...+.++++.|...|++++...       ..++   .+.+|+.|+.++
T Consensus        37 ~i~~~-~~~t~~~la~~l~i---~~~tvs~~l~~L~~~glI~r~~~-------~~D~R~~~l~LT~~G~~~~   97 (144)
T d1lj9a_          37 RVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQED-------ASNKKIKRIYATEKGKNVY   97 (144)
T ss_dssp             HHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC-------SSCTTCEEEEECHHHHHHH
T ss_pred             HHHhC-CCCCHHHHHHHHCc---cHhhHHHHHHHHHhhhcccccCC-------CCCCCccccccCHHHHHHH
Confidence            34444 57999999999999   68999999999999999998863       2233   688899888665

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.35  E-value=0.27  Score=36.98  Aligned_cols=82  Identities=16%  Similarity=0.116  Sum_probs=54.7

Q ss_pred             eEEEecCCc-h-HHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCCCccEEEechhhccCChhHHH
Q 037127          199 SLVDVGGAT-G-TVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIPPADAVVLKWILHDWNDEECV  274 (307)
Q Consensus       199 ~vlDvGgG~-G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p~~D~i~~~~vLh~~~~~~~~  274 (307)
                      +|+=||||. | .++..|.+..+..+++++|. ++.++.+.+. ..+.....+... ....+|++++.-     |.+...
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~   76 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFR   76 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSCSEEESCGGGGGGTCCSEEEECS-----CHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh-hcchhhhhhhhhhhccccccccccC-----Cchhhh
Confidence            577799994 3 45667777777889999999 7778877742 112222222222 223579888765     445567


Q ss_pred             HHHHHHHHhccC
Q 037127          275 KILKKCKEAITS  286 (307)
Q Consensus       275 ~~L~~~~~~L~p  286 (307)
                      .+|..+...+++
T Consensus        77 ~vl~~l~~~~~~   88 (171)
T d2g5ca2          77 EIAKKLSYILSE   88 (171)
T ss_dssp             HHHHHHHHHSCT
T ss_pred             hhhhhhhccccc
Confidence            889999999987

>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA4135
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.81  E-value=0.016  Score=42.82  Aligned_cols=63  Identities=13%  Similarity=0.114  Sum_probs=49.3

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      .++..|... ++.|+.+||+.+++   +...+.++++-|...|++++...       ..++   .+.+|+.|+.+..
T Consensus        34 ~vL~~l~~~-~~~t~~~la~~~~i---~~~~vs~~i~~L~~~gli~r~~~-------~~D~R~~~l~lT~~G~~~~~   99 (136)
T d2fbia1          34 RVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKA-------PKDQRRVYVNLTEKGQQCFV   99 (136)
T ss_dssp             HHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeec-------CccCchhhhccCHHHHHHHH
Confidence            344445544 68999999999999   68999999999999999998863       2233   4889999886653

>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Iron-dependent regulator IdeR
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.79  E-value=0.079  Score=33.49  Aligned_cols=37  Identities=11%  Similarity=0.113  Sum_probs=34.0

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +++++..+||+.+|+   .+..+.+.++-|...|++..++
T Consensus        21 ~~~v~~~~iA~~L~v---s~~SVt~mvkrL~~~Glv~~~~   57 (63)
T d2isya1          21 GVTPLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG   57 (63)
T ss_dssp             TCCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT
T ss_pred             CCCCcHHHHHHHhCC---CchhHHHHHHHHHHCCCEEEcC
Confidence            478999999999999   5788999999999999999886

>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.1  Score=33.81  Aligned_cols=39  Identities=15%  Similarity=0.286  Sum_probs=34.7

Q ss_pred             CCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           47 HGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        47 ~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +|-|-|+.|||+.+|+.  .+..+.+.|..|...|++++.+
T Consensus        21 ~G~~Ps~rei~~~~g~~--S~stv~~~l~~Le~kG~I~r~~   59 (71)
T d1jhfa1          21 TGMPPTRAEIAQRLGFR--SPNAAEEHLKALARKGVIEIVS   59 (71)
T ss_dssp             HSSCCCHHHHHHHTTCS--SHHHHHHHHHHHHHTTSEEECS
T ss_pred             hCCCCCHHHHHHHcCCC--CHHHHHHHHHHHHHCcCeecCC
Confidence            35799999999999994  4678999999999999999975

>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Organic hydroperoxide resistance transcriptional regulator OhrR
species: Bacillus subtilis [TaxId: 1423]

Probab=92.55  E-value=0.021  Score=42.20  Aligned_cols=61  Identities=15%  Similarity=0.272  Sum_probs=48.7

Q ss_pred             ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           41 PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      +..|... ++.|..+||+.+++   +...+.+++..|...|++.+...       ..++   ...+|+.|+.+..
T Consensus        39 L~~l~~~-~~~t~~~La~~~~i---~~~~vsr~i~~L~~~glv~r~~~-------~~D~R~~~i~lT~~G~~~~~  102 (137)
T d1z91a1          39 LLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRS-------EEDERSVLISLTEDGALLKE  102 (137)
T ss_dssp             HHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBC-------SSCTTSBEEEECHHHHSGGG
T ss_pred             HHHHHcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHhhccceEEeec-------CCCCCeEEEEECHHHHHHHH
Confidence            4445443 68999999999999   68999999999999999998863       1233   4899999986654

>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Multiple antibiotic resistance repressor, MarR
species: Escherichia coli [TaxId: 562]

Probab=92.53  E-value=0.083  Score=38.78  Aligned_cols=61  Identities=15%  Similarity=0.157  Sum_probs=48.5

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      ++..|... ++.|..+||+.+++   +...+.+++..|...|++++...       .+++   .+.+|+.|+.+.
T Consensus        39 vL~~l~~~-~~~t~~ela~~~~i---~~~~vs~~v~~L~~~glv~r~~~-------~~D~R~~~i~lT~~G~~~~  102 (138)
T d1jgsa_          39 VLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPN-------PNDKRGVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC-------TTCSSCEEEEECHHHHHHH
T ss_pred             HHHhHHhC-cCCCHHHHHHHHCC---CHhHHHHHHHHHhhCCCEEEeec-------cCCCCeeEEEECHHHHHHH
Confidence            34444443 68999999999999   68999999999999999998763       1233   699999998765

>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtfH
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.50  E-value=0.037  Score=39.67  Aligned_cols=78  Identities=14%  Similarity=0.229  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCC
Q 037127           16 QAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNN   94 (307)
Q Consensus        16 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~   94 (307)
                      ....++++.+-|...+|..         |..  |+..+.||.+.+ |+   .+..|.+-|+.|...|++++.....    
T Consensus        14 v~~~l~~ig~kW~l~Il~~---------L~~--g~~RF~el~~~l~gi---s~~~Ls~rL~~Le~~glv~R~~~~~----   75 (114)
T d1yyva1          14 SREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRKMGGV---SEKMLAQSLQALEQDGFLNRVSYPV----   75 (114)
T ss_dssp             HHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECS----
T ss_pred             HHHHHHHHcCCCHHHHHHH---------Hhc--CCCCHHHHHHHcccc---chhHHHHHHHHHHHHHHHhhcccCC----
Confidence            3556677777776666654         233  789999999998 78   6788999999999999999885310    


Q ss_pred             CCCCCeeecChhcchhh
Q 037127           95 NDEEQGYVLTNASKLLL  111 (307)
Q Consensus        95 ~~~~~~y~~t~~s~~l~  111 (307)
                      ..-.-.|++|+.|+.|.
T Consensus        76 ~p~~veY~LT~~G~~L~   92 (114)
T d1yyva1          76 VPPHVEYSLTPLGEQVS   92 (114)
T ss_dssp             SSCEEEEEECHHHHHHH
T ss_pred             CCchhHhHhhHhHHHHH
Confidence            00012499999999776

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.50  E-value=0.046  Score=42.99  Aligned_cols=103  Identities=17%  Similarity=0.094  Sum_probs=66.0

Q ss_pred             ccCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEE--ecCCCCC-----CC-CccEEEech
Q 037127          194 FEGLNSLVDVGGAT-GTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYV--GGDMFEA-----IP-PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~--~~d~~~~-----~p-~~D~i~~~~  263 (307)
                      .+...+||.+|||. |..+..+++.....++++.|. +.-++.+++......+.  ..|+.+.     -+ ++|+++-.-
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v  102 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV  102 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence            56778999999997 778888898888789999998 67777777632221111  1111110     11 478776432


Q ss_pred             h------hcc-CChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          264 I------LHD-WNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       264 v------Lh~-~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      -      .|. .........|+.+.++++|   ||+++++-..
T Consensus       103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~---gG~v~~~G~~  142 (195)
T d1kola2         103 GFEARGHGHEGAKHEAPATVLNSLMQVTRV---AGKIGIPGLY  142 (195)
T ss_dssp             CTTCBCSSTTGGGSBCTTHHHHHHHHHEEE---EEEEEECSCC
T ss_pred             cccccCCcccceeecCcHHHHHHHHHHHhc---CCEEEEeeec
Confidence            1      010 1111123679999999999   9999988643

>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarR
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.48  E-value=0.033  Score=39.91  Aligned_cols=53  Identities=8%  Similarity=0.121  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      ++.|..+||+.+++   +...+.+++..|...|++.+...       .+++   .+.+|+.|+.+.
T Consensus        47 ~~~t~~ela~~l~~---~~~~vs~~i~~Le~~gli~r~~~-------~~D~R~~~i~LT~~G~~~~  102 (115)
T d1hsja1          47 NEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRS-------LQDERTVIVYVTDTQKANI  102 (115)
T ss_dssp             SEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEEC-------CSSSSCCEEECCSSHHHHH
T ss_pred             CCcCHHHHHHHHCC---ChhhHHHHHHHHHHcCCeEEEee-------cCCCceEEEEECHHHHHHH
Confidence            68999999999999   68999999999999999998863       2233   488898887654

>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PG0823
species: Porphyromonas gingivalis [TaxId: 837]

Probab=92.37  E-value=0.04  Score=38.63  Aligned_cols=78  Identities=14%  Similarity=0.169  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCC
Q 037127           16 QAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNN   94 (307)
Q Consensus        16 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~   94 (307)
                      ....++++.+-|...+|..         |..  |+..+.||.+.+ |+   .+..|.+-|+.|.+.|++.+.....    
T Consensus        10 v~~~l~ilg~kW~l~Il~~---------L~~--g~~rF~el~~~l~gI---s~~~Ls~rLkeL~~~glv~r~~~~~----   71 (102)
T d2fswa1          10 VRKSMQIFAGKWTLLIIFQ---------INR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPE----   71 (102)
T ss_dssp             HHHHHHHHTSSSHHHHHHH---------HTT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECS----
T ss_pred             HHHHHHHHcCCCHHHHHHH---------Hcc--CCCCHHHHHhhCccc---chhHHHHHHHHHHHCCceeecccCC----
Confidence            3445555555555555443         232  789999999997 88   6789999999999999999875210    


Q ss_pred             CCCCCeeecChhcchhh
Q 037127           95 NDEEQGYVLTNASKLLL  111 (307)
Q Consensus        95 ~~~~~~y~~t~~s~~l~  111 (307)
                      ..-.-.|++|+.|+.|.
T Consensus        72 ~p~~veY~LT~~G~~L~   88 (102)
T d2fswa1          72 VPPRVEYSLTPLGEKVL   88 (102)
T ss_dssp             SSCEEEEEECHHHHTTH
T ss_pred             CCCeehhhhhHhHHHHH
Confidence            00012499999998765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.37  E-value=0.82  Score=34.07  Aligned_cols=93  Identities=15%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC-----------CC-CccEE
Q 037127          194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA-----------IP-PADAV  259 (307)
Q Consensus       194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~-----------~p-~~D~i  259 (307)
                      .....+||-+||| .|.++..+++... .+++++|. +.-++.+++......+...+...+           .+ .+|++
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v  102 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT  102 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence            4566788889988 7788888888874 69999998 666777776444444333222211           12 37776


Q ss_pred             EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      +-.-     ..   ...+..+.+.+++   +|+++++-.
T Consensus       103 id~~-----g~---~~~~~~a~~~~~~---~G~iv~~G~  130 (170)
T d1e3ja2         103 IDCS-----GN---EKCITIGINITRT---GGTLMLVGM  130 (170)
T ss_dssp             EECS-----CC---HHHHHHHHHHSCT---TCEEEECSC
T ss_pred             eecC-----CC---hHHHHHHHHHHhc---CCceEEEec
Confidence            5432     22   2567888889998   899998864

>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein EF0647
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.90  E-value=0.051  Score=38.48  Aligned_cols=57  Identities=21%  Similarity=0.290  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127           49 KPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK  112 (307)
Q Consensus        49 ~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~  112 (307)
                      |+..+.||.+.+ |+   .+..|.+-|+.|...|++.+..-..    ..-.-.|++|+.|+.|.+
T Consensus        31 g~~RF~el~~~l~gI---S~~~Ls~rLk~L~~~glv~R~~~~~----~p~~veY~LT~~G~~L~p   88 (108)
T d1z7ua1          31 GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFNE----LPPRVEYTLTPEGYALYD   88 (108)
T ss_dssp             SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEECC----SSCEEEEEECHHHHHHHH
T ss_pred             CCCCHHHHHHHCcCC---ChhHHHHHHHHHHHCCcceeeccCC----CcceehhhhchhHHHHHH
Confidence            789999999997 78   6799999999999999999865210    000123999999997763

>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.86  E-value=0.076  Score=38.44  Aligned_cols=53  Identities=9%  Similarity=0.238  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      +++|+.|||+.+++   ....+.+.++.|...|++++...       ..+.   ...+|+.|+...
T Consensus        49 ~~~t~~eia~~~~~---~~~~vs~~l~~L~~~g~v~r~~~-------~~D~R~~~i~lT~~G~~~~  104 (125)
T d1p4xa1          49 NTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRS-------KIDERNTYISISEEQREKI  104 (125)
T ss_dssp             SEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEEC-------SSSTTSEEEECCHHHHHHH
T ss_pred             CCcCHHHHHHHhCC---CcchHHHHHHHHHHCCCceeecc-------cCCCCeEEEEECHHHHHHH
Confidence            68999999999999   67999999999999999999863       1222   488999987554

>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Manganese transport regulator MntR
species: Bacillus subtilis [TaxId: 1423]

Probab=91.85  E-value=0.044  Score=34.48  Aligned_cols=36  Identities=14%  Similarity=0.301  Sum_probs=32.1

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ++++..+||+.+|+   .+..+...++-|...|+++.++
T Consensus        20 ~~v~~~~iA~~L~v---s~~SVs~mikrL~~~GlV~~~~   55 (61)
T d2ev0a1          20 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK   55 (61)
T ss_dssp             SSCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC--
T ss_pred             CCccHHHHHHHhCC---CchhHHHHHHHHHHCCCEEEcc
Confidence            78999999999999   5789999999999999999875

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=91.78  E-value=0.049  Score=34.49  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=39.3

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      +..|...|..+ +..|..+||+.+|+   ++..+.+=++-|...|++...
T Consensus         7 D~~IL~~L~~n-~r~s~~~iA~~lgi---s~~tv~~Ri~~L~~~giI~~~   52 (63)
T d2cfxa1           7 DLNIIEELKKD-SRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY   52 (63)
T ss_dssp             HHHHHHHHHHC-SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence            44566777765 79999999999999   678999999999999999864

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.72  E-value=0.029  Score=35.24  Aligned_cols=46  Identities=20%  Similarity=0.321  Sum_probs=38.6

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      +..|...|..+ +..|+.+||+++|+   ++..+.+-++.|...|++...
T Consensus         5 D~kIl~~L~~n-~r~s~~~lA~~~gl---s~~~v~~Ri~~L~~~giI~~~   50 (60)
T d1i1ga1           5 DKIILEILEKD-ARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGY   50 (60)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence            34456677764 78999999999999   679999999999999999754

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=91.48  E-value=0.077  Score=43.35  Aligned_cols=64  Identities=20%  Similarity=0.251  Sum_probs=47.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--------------cCCCeEEEecCCCC---C-CCCcc
Q 037127          197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--------------DLANLKYVGGDMFE---A-IPPAD  257 (307)
Q Consensus       197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------------~~~rv~~~~~d~~~---~-~p~~D  257 (307)
                      ..+|||.-||.|..+..++..  +.++++++. |.+....+.              ...|++++.+|..+   . .+.+|
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D  166 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence            348999999999999999998  578999998 444333322              13489999999654   2 23589


Q ss_pred             EEEec
Q 037127          258 AVVLK  262 (307)
Q Consensus       258 ~i~~~  262 (307)
                      +|++-
T Consensus       167 vIYlD  171 (250)
T d2oyra1         167 VVYLD  171 (250)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88764

>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Pleiotropic regulator of virulence genes, SarA
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.47  E-value=0.056  Score=38.59  Aligned_cols=56  Identities=16%  Similarity=0.299  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      +++|+.+||+.+++   +...+.++++.|...|++++.....    +.-.-.+.+|+.|+...
T Consensus        48 ~~~t~~~la~~l~~---~~~tvs~~i~~Le~~gli~r~~~~~----D~R~~~i~LT~~G~~~~  103 (115)
T d2frha1          48 KEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNEH----DERTVLILVNAQQRKKI  103 (115)
T ss_dssp             SEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCSS----SSCCCEEECCSHHHHHH
T ss_pred             CCCCHHHHHHHHCC---CHhHHHHHHHHHHhhhhheeeeccc----CCceEEEEECHHHHHHH
Confidence            67899999999999   6799999999999999999986311    11113588999988554

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.37  E-value=0.036  Score=34.72  Aligned_cols=47  Identities=15%  Similarity=0.252  Sum_probs=39.8

Q ss_pred             HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      ++..|...|..+ +..|+.|||+++|+   ++..+.+-++.|...|++..-
T Consensus         4 ~D~~Il~~L~~n-~r~s~~eiA~~l~l---s~~~v~~Ri~~L~~~giI~~~   50 (60)
T d2cyya1           4 IDKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKF   50 (60)
T ss_dssp             HHHHHHHHHHHC-TTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence            345567777775 78999999999999   679999999999999999855

>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PA1607
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.25  E-value=0.077  Score=39.45  Aligned_cols=55  Identities=18%  Similarity=0.311  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      |+..+.+|.+.+|+   .+..|.+-|+.|...|++++....     ......|++|+.|+.|.
T Consensus        32 G~~rf~el~~~lgi---s~~vLs~rL~~L~~~gLv~r~~~~-----~p~r~~Y~LT~~G~~L~   86 (142)
T d2f2ea1          32 GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAE-----SGSHQEYRLTDKGRALF   86 (142)
T ss_dssp             TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECS-----SSSCEEEEECHHHHTTH
T ss_pred             CCCCHHHHHHHhhc---cHHHHHHHHHHHHHhcceeeecCC-----CCCeeEEecCcCcchHH
Confidence            79999999999999   578899999999999999875321     01123599999998765

>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=0.12  Score=31.71  Aligned_cols=44  Identities=23%  Similarity=0.362  Sum_probs=37.9

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      +|..|.. +...|+.+||.++++   +-.-+-|+|..|...|-+.++.
T Consensus         7 ~l~~lg~-~~~~tA~~LA~kl~v---pKk~iNr~LYsL~~kgkl~k~~   50 (59)
T d2gxba1           7 FLEELGE-GKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEA   50 (59)
T ss_dssp             HHHHHCT-TCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHhcCC-ccchhHHHHHHHhCC---cHHHHHHHHHHHHHccchhhcC
Confidence            4555554 478999999999999   5789999999999999999986

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=91.10  E-value=0.31  Score=36.48  Aligned_cols=79  Identities=10%  Similarity=0.039  Sum_probs=50.4

Q ss_pred             eEEEecCC--chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCCCccEEEechhhccCChhHHHH
Q 037127          199 SLVDVGGA--TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVK  275 (307)
Q Consensus       199 ~vlDvGgG--~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~  275 (307)
                      +|.=||+|  -+.++..|.+.  +.+++++|. ++.++.+.+.. .+. ...+..+....+|+|++.-     |......
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~-~~~-~~~~~~~~~~~~DiIilav-----p~~~~~~   72 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQ-LVD-EAGQDLSLLQTAKIIFLCT-----PIQLILP   72 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTT-SCS-EEESCGGGGTTCSEEEECS-----CHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhh-ccc-eeeeecccccccccccccC-----cHhhhhh
Confidence            46667887  33445555554  678999999 67777766411 111 1122223345799998743     5566778


Q ss_pred             HHHHHHHhccC
Q 037127          276 ILKKCKEAITS  286 (307)
Q Consensus       276 ~L~~~~~~L~p  286 (307)
                      +++++...+++
T Consensus        73 vl~~l~~~l~~   83 (165)
T d2f1ka2          73 TLEKLIPHLSP   83 (165)
T ss_dssp             HHHHHGGGSCT
T ss_pred             hhhhhhhhccc
Confidence            99999999987

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.054  Score=34.23  Aligned_cols=46  Identities=9%  Similarity=0.184  Sum_probs=39.3

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ   86 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~   86 (307)
                      +..|...|..+ +..|..|||+++|+   ++..+.+=++.|...|++...
T Consensus         7 D~~IL~~L~~~-~r~s~~eiA~~l~l---s~~~v~~Ri~rL~~~GiI~~~   52 (63)
T d2cg4a1           7 DRGILEALMGN-ARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA   52 (63)
T ss_dssp             HHHHHHHHHHC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence            44566777765 79999999999999   678999999999999999865

>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Protease production regulatory protein Hpr
species: Bacillus subtilis [TaxId: 1423]

Probab=90.88  E-value=0.046  Score=41.69  Aligned_cols=64  Identities=9%  Similarity=0.134  Sum_probs=48.1

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      ++..|... +++|+.+||+.+++   +...+.+++..|...|++++.....    |.-.-.+.+|+.|+.+.
T Consensus        46 vL~~l~~~-~~~t~~~la~~~~l---~~~tvs~~i~rL~~~gli~r~~~~~----D~R~~~l~lT~~G~~~~  109 (162)
T d2fxaa1          46 ILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLN----DKRNTYVQLTEEGTEVF  109 (162)
T ss_dssp             HHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC----------CEEEECHHHHHHH
T ss_pred             HHhhhccC-CCcCHHHHHHHHcC---CchhhHHHHHHHHHCCCceeecccc----cCeeeeeccCHhHHHHH
Confidence            44555544 68999999999999   6899999999999999999886210    00112589999998654

>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.74  E-value=0.091  Score=38.06  Aligned_cols=62  Identities=19%  Similarity=0.245  Sum_probs=47.4

Q ss_pred             cccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127           40 IPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL  111 (307)
Q Consensus        40 lfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~  111 (307)
                      ++..|... ++++|..+||+.+++   +...+.++++-|...|++++....       ++.   ...+|+.|+.+.
T Consensus        38 vL~~l~~~~~~~~~~~~ia~~l~~---~~~~vs~~v~~L~~~glV~r~~~~-------~D~R~v~i~LT~~G~~~~  103 (125)
T d1p4xa2          38 ILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERST-------EDERKILIHMDDAQQDHA  103 (125)
T ss_dssp             HHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECS-------SSTTCEEEECCHHHHHHH
T ss_pred             HHHHHHHccCCCccHHHHHHHHCC---CcchHHHHHHHHHhccCEeeeecC-------CCCCeEEEEECHHHHHHH
Confidence            34445321 257899999999999   689999999999999999988631       232   488999887554

>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Probable transcription regulator BT4300, C-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=90.71  E-value=0.15  Score=33.13  Aligned_cols=44  Identities=14%  Similarity=0.268  Sum_probs=37.8

Q ss_pred             CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127           50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS  107 (307)
Q Consensus        50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s  107 (307)
                      ++|-++||+.+|+   ....+.|.|..|...|+++..           .+.+.+.+..
T Consensus        27 ~lt~~elA~~lg~---sr~tvsr~l~~l~~~g~I~~~-----------~~~i~I~d~~   70 (73)
T d1zyba1          27 KVKMDDLARCLDD---TRLNISKTLNELQDNGLIELH-----------RKEILIPDAQ   70 (73)
T ss_dssp             ECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSCEEE-----------TTEEEESCGG
T ss_pred             ecCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEec-----------CCEEEEccHH
Confidence            5799999999999   679999999999999999977           4677766543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.83  Score=34.18  Aligned_cols=95  Identities=14%  Similarity=0.076  Sum_probs=61.5

Q ss_pred             ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEec-CCCCC--------CC-CccEEEe
Q 037127          194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGG-DMFEA--------IP-PADAVVL  261 (307)
Q Consensus       194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~-d~~~~--------~p-~~D~i~~  261 (307)
                      ..+..+|+=+|+| .|.++..+++.....++++.|. +.-++.+++.......... +-..+        .+ ++|+++-
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid  103 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE  103 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence            4566788889998 5667778888876558999998 7777777763222222211 11110        12 4787654


Q ss_pred             chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .-     ..   ...++.+.+.+++   ||+++++-..
T Consensus       104 ~~-----G~---~~~~~~a~~~~~~---gG~iv~~G~~  130 (171)
T d1pl8a2         104 CT-----GA---EASIQAGIYATRS---GGTLVLVGLG  130 (171)
T ss_dssp             CS-----CC---HHHHHHHHHHSCT---TCEEEECSCC
T ss_pred             cc-----CC---chhHHHHHHHhcC---CCEEEEEecC
Confidence            33     22   2568888899998   9999998753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.10  E-value=1.5  Score=32.93  Aligned_cols=95  Identities=17%  Similarity=0.072  Sum_probs=61.8

Q ss_pred             ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCC--C------C--CC-CccEEE
Q 037127          194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMF--E------A--IP-PADAVV  260 (307)
Q Consensus       194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~--~------~--~p-~~D~i~  260 (307)
                      .+...+||-+|+| .|.++..+++...--+++++|. ++-.+.+++......+-..+-.  +      +  -+ ++|+++
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi  105 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL  105 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence            4567889999998 5888899999875447999998 7777777763332222222211  1      0  12 478776


Q ss_pred             echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      -.-     ..+   ..++.+.+.+++   ||+++++-..
T Consensus       106 d~v-----G~~---~~~~~a~~~l~~---~G~iv~~G~~  133 (182)
T d1vj0a2         106 EAT-----GDS---RALLEGSELLRR---GGFYSVAGVA  133 (182)
T ss_dssp             ECS-----SCT---THHHHHHHHEEE---EEEEEECCCC
T ss_pred             ecC-----Cch---hHHHHHHHHhcC---CCEEEEEeec
Confidence            321     111   457788899998   8999888643

>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Dlm-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.36  E-value=0.083  Score=31.63  Aligned_cols=48  Identities=15%  Similarity=0.301  Sum_probs=40.9

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |-.|+..|.+.|+|+-...|+.++++   +..-|.++|..|-..+=+...+
T Consensus         3 EQkILQVL~dagspvk~~ql~k~cqV---pkk~lNqVL~rlkke~kVsl~~   50 (57)
T d1j75a_           3 EQKILQVLSDDGGPVKIGQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPE   50 (57)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHCC---CHHHHHHHHHHHHhccccccCC
Confidence            34566677777899999999999999   5788999999999999888876

>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator DR1159
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.16  E-value=0.087  Score=40.35  Aligned_cols=53  Identities=13%  Similarity=0.194  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127           50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK  112 (307)
Q Consensus        50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~  112 (307)
                      ++|..+||+.+++   +...+.++++-|...|++++...       ..++   .+++|+.|+.+..
T Consensus        79 ~lt~~eLa~~l~i---~~~tvsr~l~~Le~~GlV~r~~~-------~~DrR~~~i~LT~~G~~l~~  134 (172)
T d2fbka1          79 GLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERRED-------ERDRRSASIRLTPQGRALVT  134 (172)
T ss_dssp             CBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC--------------CCBEECHHHHHHHH
T ss_pred             CcCHHHHHHHHCc---CHhHHHHHHHHHHhCCCeeeecc-------ccchhhHHhhcCHHHHHHHH
Confidence            4899999999999   67899999999999999999862       1122   4789999886653

>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Putative transcriptional regulator RHA1 ro03477
species: Rhodococcus sp. RHA1 [TaxId: 101510]

Probab=88.69  E-value=0.59  Score=29.64  Aligned_cols=52  Identities=21%  Similarity=0.224  Sum_probs=41.3

Q ss_pred             HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      ...|...+..|-|.   . |..++..+||+.+|+   ...-+++-+..|.+.|+++..+
T Consensus         8 ~~~l~~~I~~g~~~---~-G~~l~~~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~   59 (69)
T d2hs5a1           8 AGILRDAIIDGTFR---P-GARLSEPDICAALDV---SRNTVREAFQILIEDRLVAHEL   59 (69)
T ss_dssp             HHHHHHHHHHTSSC---T-TCEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHHHcCCCC---C-cCccCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEc
Confidence            34455555566553   2 467789999999999   6789999999999999999986

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.42  E-value=0.42  Score=35.90  Aligned_cols=94  Identities=16%  Similarity=0.068  Sum_probs=58.7

Q ss_pred             ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC---CCC-CccEEEec-hhhc
Q 037127          194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIP-PADAVVLK-WILH  266 (307)
Q Consensus       194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p-~~D~i~~~-~vLh  266 (307)
                      ..+..+|+-+|+| .|.++..+++.. +.+++++|. ++-++.+++......+...+-.+   ... .+|+++-. ...+
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~  103 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT  103 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence            5667889999998 778888888876 679999998 66677777632222222222111   122 47876543 2222


Q ss_pred             cCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      ...       +..+.+.+++   +|+++++-.
T Consensus       104 ~~~-------~~~~~~~l~~---~G~iv~~G~  125 (168)
T d1piwa2         104 DID-------FNIMPKAMKV---GGRIVSISI  125 (168)
T ss_dssp             TCC-------TTTGGGGEEE---EEEEEECCC
T ss_pred             cch-------HHHHHHHhhc---cceEEEecc
Confidence            111       3446777888   899998853

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.35  E-value=1.6  Score=32.79  Aligned_cols=94  Identities=12%  Similarity=-0.065  Sum_probs=61.1

Q ss_pred             ccCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEE--ecCCC-C----C-CC-CccEEEec
Q 037127          194 FEGLNSLVDVGGAT-GTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYV--GGDMF-E----A-IP-PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~--~~d~~-~----~-~p-~~D~i~~~  262 (307)
                      .+...+||=+|||. |.++..+++.....++++.|. +.-.+.+++......+.  ..|-. .    . .+ ++|+++-.
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~  105 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  105 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence            56678899999996 899999999987668899998 55566666532222221  11111 1    0 11 47876432


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCC-cEEEEEee
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKI-GKVIIIDM  298 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~g-g~lli~e~  298 (307)
                      -     ..   ...+..+.+.+++   + |+++++-.
T Consensus       106 ~-----G~---~~~~~~a~~~~~~---g~G~~v~vG~  131 (174)
T d1e3ia2         106 A-----GT---AQTLKAAVDCTVL---GWGSCTVVGA  131 (174)
T ss_dssp             S-----CC---HHHHHHHHHTBCT---TTCEEEECCC
T ss_pred             c-----cc---chHHHHHHHHhhc---CCeEEEecCC
Confidence            2     22   2568889999987   6 89988754

>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcription factor E/IIe-alpha, N-terminal domain
domain: Transcription factor E/IIe-alpha, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.83  E-value=0.095  Score=35.29  Aligned_cols=46  Identities=22%  Similarity=0.369  Sum_probs=38.1

Q ss_pred             CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .|++.|.+.++.+|=++||+.+|+   +...++++|..|...|++....
T Consensus        22 ~v~~~L~~~~~evtDe~iA~~tgi---~in~VRk~Ly~L~~~~L~~y~R   67 (88)
T d1q1ha_          22 DVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYRK   67 (88)
T ss_dssp             HHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHhccCcCCHHHHHHHhCC---cHHHHHHHHHHHHhCCceEEEE
Confidence            366666543367999999999999   7899999999999999997654

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=87.81  E-value=0.91  Score=38.72  Aligned_cols=67  Identities=18%  Similarity=0.309  Sum_probs=41.1

Q ss_pred             CcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-------CCCeEEEecchHHHHhch
Q 037127          164 EPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-------PNLECTDFDLPHVVNGLE  236 (307)
Q Consensus       164 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------p~~~~~~~Dl~~~~~~a~  236 (307)
                      .|+....|.+..+.   +... +.....  .++..+||++|+|+|.++..+++..       ..++.+.++..+.+...+
T Consensus        53 sp~is~~Fg~~ia~---~~~~-~~~~~~--~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q  126 (365)
T d1zkda1          53 SPEISQMFGELLGL---WSAS-VWKAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQ  126 (365)
T ss_dssp             HHHHCHHHHHHHHH---HHHH-HHHHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHH
T ss_pred             CCchHHHHHHHHHH---HHHH-HHHHhC--CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHH
Confidence            45566666655542   2222 223333  3455689999999999998887653       234678888855554443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=87.64  E-value=0.15  Score=38.88  Aligned_cols=88  Identities=17%  Similarity=0.200  Sum_probs=58.0

Q ss_pred             CCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCC---CCCCCccEEEechhhccCC
Q 037127          196 GLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMF---EAIPPADAVVLKWILHDWN  269 (307)
Q Consensus       196 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~---~~~p~~D~i~~~~vLh~~~  269 (307)
                      ++.+|+=||+| .|..+...+++. +.+++++|. ++.++..+. ...++++...+-.   +....+|+++..--+.--.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~  109 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  109 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence            47899999999 677788888887 579999999 777776665 4445555443221   1244689887765543222


Q ss_pred             hhHHHHHHHHHHHhccC
Q 037127          270 DEECVKILKKCKEAITS  286 (307)
Q Consensus       270 ~~~~~~~L~~~~~~L~p  286 (307)
                      .+  .-+=++..+.|||
T Consensus       110 aP--~lIt~~mv~~Mk~  124 (168)
T d1pjca1         110 AP--ILVPASLVEQMRT  124 (168)
T ss_dssp             CC--CCBCHHHHTTSCT
T ss_pred             cC--eeecHHHHhhcCC
Confidence            22  1234567788998

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=87.61  E-value=0.3  Score=37.18  Aligned_cols=94  Identities=17%  Similarity=0.033  Sum_probs=59.9

Q ss_pred             ccCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEec--CCCC---C-CC--CccEEEech
Q 037127          194 FEGLNSLVDVGGAT-GTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGG--DMFE---A-IP--PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~--d~~~---~-~p--~~D~i~~~~  263 (307)
                      ..+..+|+=+|||. |..+..+++.....++++.|. +.-.+.+++......+...  +..+   + ..  ++|+++-.-
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~  104 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG  104 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence            55667788899985 888999999875557999998 5556777763221112111  1111   1 11  388765432


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                      -     .   ...++.+.+.++|   +|+++++-.
T Consensus       105 g-----~---~~~~~~a~~~~~~---~G~iv~~G~  128 (174)
T d1jqba2         105 G-----G---SETLSQAVKMVKP---GGIISNINY  128 (174)
T ss_dssp             S-----C---TTHHHHHHHHEEE---EEEEEECCC
T ss_pred             C-----C---HHHHHHHHHHHhc---CCEEEEEee
Confidence            2     1   1457778889998   899998754

>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Transcriptional regulator PG0396, C-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=86.91  E-value=0.44  Score=31.13  Aligned_cols=36  Identities=8%  Similarity=0.122  Sum_probs=33.1

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      -|.|-++||..+|+   ....+.|+|..|...|+++...
T Consensus        28 ~~lt~~eLA~~~G~---sretvsr~L~~l~~~glI~~~~   63 (81)
T d2gaua1          28 IYLSREELATLSNM---TVSNAIRTLSTFVSERMLALDG   63 (81)
T ss_dssp             CCCCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence            47999999999999   5799999999999999999874

>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-inducible transcription repressor HrcA, N-terminal domain
domain: Heat-inducible transcription repressor HrcA, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.85  E-value=0.5  Score=31.65  Aligned_cols=40  Identities=18%  Similarity=0.204  Sum_probs=34.1

Q ss_pred             CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127           48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL   88 (307)
Q Consensus        48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~   88 (307)
                      |.|.+..+||+..+++- .+..++..|..|...||+++.-.
T Consensus        21 g~Pv~s~~i~~~~~l~~-S~aTIRn~m~~LE~~G~l~~~h~   60 (87)
T d1stza1          21 KKPVSSQRVLEVSNIEF-SSATIRNDMKKLEYLGYIYQPHT   60 (87)
T ss_dssp             CSCBCHHHHHHHSCCCS-CHHHHHHHHHHHHHTTSEECCSS
T ss_pred             CCccCHHHHHHHhCCCC-CHHHHHHHHHHHHHCCcccCCCC
Confidence            58999999999988732 47888999999999999998643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.68  E-value=0.24  Score=37.09  Aligned_cols=92  Identities=17%  Similarity=0.115  Sum_probs=57.1

Q ss_pred             ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecC--CCCC----CCCccEEEechhh
Q 037127          194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGD--MFEA----IPPADAVVLKWIL  265 (307)
Q Consensus       194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d--~~~~----~p~~D~i~~~~vL  265 (307)
                      ..+..+|+=+|+| .|..+..+++.. +.+++++|. +.-++.+++......+...+  ..+.    .+++|.++.... 
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~-  102 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV-  102 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence            4566778889988 677788888887 479999998 66677777632222221111  1110    123444433211 


Q ss_pred             ccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          266 HDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                          .   ...+..+.+.+++   +|+++++-
T Consensus       103 ----~---~~~~~~~~~~l~~---~G~iv~~G  124 (166)
T d1llua2         103 ----S---NSAFGQAIGMARR---GGTIALVG  124 (166)
T ss_dssp             ----C---HHHHHHHHTTEEE---EEEEEECC
T ss_pred             ----c---chHHHHHHHHhcC---CcEEEEEE
Confidence                1   2457788899998   89999875

>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Catabolite gene activator protein (CAP), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.58  E-value=0.32  Score=30.89  Aligned_cols=35  Identities=11%  Similarity=0.211  Sum_probs=32.6

Q ss_pred             CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |+|-++||+.+|+   ....+.|+|..|...|+++...
T Consensus        29 ~lt~~~lA~~~G~---sRetvsr~L~~l~~~glI~~~~   63 (69)
T d1i5za1          29 KITRQEIGQIVGC---SRETVGRILKMLEDQNLISAHG   63 (69)
T ss_dssp             ECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             CCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence            6999999999999   6799999999999999999874

>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PH0730 N-terminal domain-like
domain: Hypothetical protein PH0730
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.47  E-value=0.43  Score=30.38  Aligned_cols=49  Identities=22%  Similarity=0.291  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL  111 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~  111 (307)
                      .|+.-..||+.+++   .++.++..++.|...|+++...           ....+|+.|+.+.
T Consensus        16 qPiGRr~La~~L~l---~Er~vRte~~~Lk~~gLI~~~~-----------~Gm~lTe~G~~~l   64 (69)
T d2p8ta1          16 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ-----------RGHFLTLKGKEIR   64 (69)
T ss_dssp             SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-------------CEEECHHHHHHH
T ss_pred             CCccHHHHHHHcCC---cHHHHHHHHHHHHHCCCeeeeC-----------CCCEECHhHHHHH
Confidence            69999999999999   6899999999999999999985           5678888887554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.38  E-value=0.44  Score=35.92  Aligned_cols=91  Identities=15%  Similarity=0.106  Sum_probs=58.7

Q ss_pred             ccCCCeEEEecC--CchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCe-EEEecCCCCC-----CC-CccEEEec
Q 037127          194 FEGLNSLVDVGG--ATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANL-KYVGGDMFEA-----IP-PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGg--G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv-~~~~~d~~~~-----~p-~~D~i~~~  262 (307)
                      +.+..+||-.|+  |.|..+..+++.. ++++++.+. ++-.+.+++ ..+.+ .....|+.+.     -+ .+|+++-.
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~  104 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM  104 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred             CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence            566788999985  6888889999887 568888776 555666665 23322 1111122211     12 48887753


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIID  297 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e  297 (307)
                      -      -   ...++.+.++|+|   +|+++.+-
T Consensus       105 ~------g---~~~~~~~~~~l~~---~G~iv~~G  127 (174)
T d1yb5a2         105 L------A---NVNLSKDLSLLSH---GGRVIVVG  127 (174)
T ss_dssp             C------H---HHHHHHHHHHEEE---EEEEEECC
T ss_pred             c------c---HHHHHHHHhccCC---CCEEEEEe
Confidence            2      1   2457888899998   89999874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.99  E-value=0.5  Score=35.73  Aligned_cols=93  Identities=17%  Similarity=0.146  Sum_probs=59.2

Q ss_pred             ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhc-CCCeEEEec--CCCCC----CC-CccEEEech
Q 037127          194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESD-LANLKYVGG--DMFEA----IP-PADAVVLKW  263 (307)
Q Consensus       194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~~rv~~~~~--d~~~~----~p-~~D~i~~~~  263 (307)
                      .++..+|+=+||| .|..+..+++.....++++.|. +.-++.+++. .+.+ +...  |+.+.    .+ ++|+++-.-
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~-i~~~~~~~~~~i~~~t~gg~D~vid~~  104 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHV-INSKTQDPVAAIKEITDGGVNFALEST  104 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEE-EeCCCcCHHHHHHHHcCCCCcEEEEcC
Confidence            5667788889998 5567778888887667888887 6667777762 2222 2111  11110    12 478765331


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127          264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM  298 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~  298 (307)
                           ..   ...++.+.+.+++   +|+++++-.
T Consensus       105 -----G~---~~~~~~~~~~~~~---~G~i~~~G~  128 (174)
T d1f8fa2         105 -----GS---PEILKQGVDALGI---LGKIAVVGA  128 (174)
T ss_dssp             -----CC---HHHHHHHHHTEEE---EEEEEECCC
T ss_pred             -----Cc---HHHHHHHHhcccC---ceEEEEEee
Confidence                 22   2567888899998   899998753

>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Transcriptional regulator YydK
species: Bacillus subtilis [TaxId: 1423]

Probab=85.81  E-value=0.64  Score=30.21  Aligned_cols=49  Identities=14%  Similarity=0.265  Sum_probs=38.8

Q ss_pred             HHHHHhCCcccccccCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           32 LKCAVELSIPDIINKHGKPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        32 L~~a~~lglfd~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      |...+..|-+.   . |..+ |..+||+.+++   +..-+++-|..|...|++...+
T Consensus         7 i~~~I~~g~l~---~-G~~LPse~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~   56 (78)
T d3bwga1           7 IETYIEEHQLQ---Q-GDKLPVLETLMAQFEV---SKSTITKSLELLEQKGAIFQVR   56 (78)
T ss_dssp             HHHHHHHTTCC---T-TCBCCCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHcCCCC---C-cCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEc
Confidence            44444445442   2 4577 89999999999   6789999999999999999986

>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: CO-sensing protein CooA, C-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=85.04  E-value=0.48  Score=30.93  Aligned_cols=36  Identities=14%  Similarity=0.283  Sum_probs=33.0

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      -|.|-++||..+|+   ..+.+.|.|..|...|+++...
T Consensus        29 ~~~t~~eiA~~lG~---sretvsr~l~~l~~~g~I~~~~   64 (80)
T d1ft9a1          29 VDFTVEEIANLIGS---SRQTTSTALNSLIKEGYISRQG   64 (80)
T ss_dssp             ECCCHHHHHHHHCS---CHHHHHHHHHHHHHTTSSEECS
T ss_pred             cCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEECC
Confidence            37999999999999   6799999999999999999874

>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.78  E-value=0.26  Score=31.80  Aligned_cols=61  Identities=15%  Similarity=0.147  Sum_probs=47.7

Q ss_pred             hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127           37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK  108 (307)
Q Consensus        37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~  108 (307)
                      +..|.++|... ++.++-.||..+|++  ...-+-++|..|...|-+.+++.        ....|.++...+
T Consensus         7 eekI~~~L~~~-g~~~Al~iak~lGl~--kakeVN~~LY~L~k~g~v~k~~~--------tPP~W~L~~~~~   67 (73)
T d1xmka1           7 KEKICDYLFNV-SDSSALNLAKNIGLT--KARDINAVLIDMERQGDVYRQGT--------TPPIWHLTDKKR   67 (73)
T ss_dssp             HHHHHHHHHHT-CCEEHHHHHHHHCGG--GHHHHHHHHHHHHHTTSEEEECS--------SSCEEEECHHHH
T ss_pred             HHHHHHHHHHc-CCchHHHHHHHhCCC--cHHHHhHHHHHHHHCCCeecCCC--------CCCceeeecchh
Confidence            44566777765 689999999999993  12459999999999999999862        356898887654

>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Fatty acid responsive transcription factor FadR, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.23  E-value=0.72  Score=29.71  Aligned_cols=50  Identities=10%  Similarity=0.118  Sum_probs=40.1

Q ss_pred             HHHHHHhCCcccccccCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           31 SLKCAVELSIPDIINKHGKPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        31 ~L~~a~~lglfd~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .|...+..|-+.   . |..+ |..+||+.+++   ...-+++-++.|...|++...+
T Consensus        11 ~i~~~I~~g~~~---~-G~~LPs~~eLa~~~~v---Sr~tvr~Al~~L~~~G~i~~~~   61 (74)
T d1hw1a1          11 YIIESIWNNRFP---P-GTILPAERELSELIGV---TRTTLREVLQRLARDGWLTIQH   61 (74)
T ss_dssp             HHHHHHHTTSSC---T-TSBCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHcCCCC---C-cCCCccHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEe
Confidence            344555555553   2 4677 89999999999   6789999999999999999986

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=84.03  E-value=1.9  Score=30.42  Aligned_cols=81  Identities=15%  Similarity=0.146  Sum_probs=50.6

Q ss_pred             CCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC-------CCCccEEEechhhccCChhHHHHH
Q 037127          205 GATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA-------IPPADAVVLKWILHDWNDEECVKI  276 (307)
Q Consensus       205 gG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~-------~p~~D~i~~~~vLh~~~~~~~~~~  276 (307)
                      ||.|..+..+++...+-.++++|. +..++.+.  ...+.++.||..++       ...++.+++..  .  ++.++..+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~--~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~--~--~d~~n~~~   79 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL--RSGANFVHGDPTRVSDLEKANVRGARAVIVNL--E--SDSETIHC   79 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH--HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC--S--SHHHHHHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH--hcCccccccccCCHHHHHHhhhhcCcEEEEec--c--chhhhHHH
Confidence            455778888888877777888887 66555554  34678899999873       23577776532  1  34444444


Q ss_pred             HHHHHHhccCCCCCcEEEE
Q 037127          277 LKKCKEAITSNSKIGKVII  295 (307)
Q Consensus       277 L~~~~~~L~p~~~gg~lli  295 (307)
                      ... .+.+.|   ..+++.
T Consensus        80 ~~~-~r~~~~---~~~iia   94 (129)
T d2fy8a1          80 ILG-IRKIDE---SVRIIA   94 (129)
T ss_dssp             HHH-HHHHCS---SSCEEE
T ss_pred             HHH-HHHHCC---CceEEE
Confidence            444 445565   445443

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.97  E-value=1.4  Score=36.20  Aligned_cols=69  Identities=13%  Similarity=0.175  Sum_probs=50.3

Q ss_pred             ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---C---CCccEEE
Q 037127          194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---I---PPADAVV  260 (307)
Q Consensus       194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~---p~~D~i~  260 (307)
                      .....+|||+.+|.|.-+..++... +..+++++|. +.-++.+++     ...++.+...|+...   .   ..||.|+
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL  171 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  171 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence            3557789999999999998888653 5678999998 444555444     457789999887652   1   2488887


Q ss_pred             ec
Q 037127          261 LK  262 (307)
Q Consensus       261 ~~  262 (307)
                      +-
T Consensus       172 ~D  173 (293)
T d2b9ea1         172 LD  173 (293)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=83.76  E-value=1  Score=33.69  Aligned_cols=83  Identities=14%  Similarity=0.127  Sum_probs=48.8

Q ss_pred             CeEEEecCCchHHHHHH-HHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEec------CCCCCCCCccEEEech
Q 037127          198 NSLVDVGGATGTVAKAI-AKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGG------DMFEAIPPADAVVLKW  263 (307)
Q Consensus       198 ~~vlDvGgG~G~~~~~l-~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~------d~~~~~p~~D~i~~~~  263 (307)
                      ++|.=||+|.-..+... +... +.+++++|. ++-++..++      ..+.......      |..+..+++|++++.-
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            46778899965444332 3332 678999999 666665553      1111222211      1111235689988753


Q ss_pred             hhccCChhHHHHHHHHHHHhccC
Q 037127          264 ILHDWNDEECVKILKKCKEAITS  286 (307)
Q Consensus       264 vLh~~~~~~~~~~L~~~~~~L~p  286 (307)
                           +......+++.++..+++
T Consensus        81 -----~~~~~~~~~~~i~~~l~~   98 (184)
T d1bg6a2          81 -----PAIHHASIAANIASYISE   98 (184)
T ss_dssp             -----CGGGHHHHHHHHGGGCCT
T ss_pred             -----chhHHHHHHHHhhhccCC
Confidence                 333456889999999987

>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: 34L
species: Yaba-like disease virus, YLDV [TaxId: 132475]

Probab=83.70  E-value=0.56  Score=29.76  Aligned_cols=43  Identities=16%  Similarity=0.074  Sum_probs=37.4

Q ss_pred             ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           41 PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      .+.|+. |...|+.+||..+|+   +.+-+-|.|..|...|.+.+++
T Consensus        16 l~~L~~-~~~~tA~~LAk~Lg~---~Kk~VNr~LY~L~~~G~v~~~~   58 (70)
T d1sfua_          16 VLSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVP   58 (70)
T ss_dssp             HHTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHhcCC-CCCchHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecCC
Confidence            456665 478999999999999   5688999999999999999986

>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MerB N-terminal domain-like
domain: Alkylmercury lyase MerB
species: Escherichia coli [TaxId: 562]

Probab=83.41  E-value=0.13  Score=31.52  Aligned_cols=34  Identities=18%  Similarity=0.228  Sum_probs=24.5

Q ss_pred             ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHH
Q 037127           41 PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILI   78 (307)
Q Consensus        41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~   78 (307)
                      +..|.+ |.|+|++.||..+|+   +.+.++..|..+.
T Consensus         8 Lr~LA~-G~PVs~~~LA~alg~---~~~eV~~aL~~~p   41 (60)
T d1s6la1           8 LRELAK-GRPVSRTTLAGILDW---PAERVAAVLEQAT   41 (60)
T ss_dssp             HHHHHT-TCCBCHHHHHHHHTC---CHHHHHHHHTTCC
T ss_pred             HHHHhC-CCCcCHHHHHHHhCC---CHHHHHHHHHhCC
Confidence            355665 689999999999999   4555555555443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.20  E-value=3.1  Score=31.10  Aligned_cols=96  Identities=9%  Similarity=-0.050  Sum_probs=59.3

Q ss_pred             ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC--------CC-CccEEEec
Q 037127          194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA--------IP-PADAVVLK  262 (307)
Q Consensus       194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~--------~p-~~D~i~~~  262 (307)
                      .+...+||=+|+| .|.++..+++.+...+++++|. ++-++.|++......+-..|-...        .+ ++|+++-.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~  106 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV  106 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence            5667889999998 5677778888887789999998 777888887333333322221110        12 47766543


Q ss_pred             hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127          263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM  299 (307)
Q Consensus       263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~  299 (307)
                      .--        ...++.....+..  ++|+++++-..
T Consensus       107 ~g~--------~~~~~~a~~~~~~--~~G~~v~vG~~  133 (176)
T d1d1ta2         107 IGH--------LETMIDALASCHM--NYGTSVVVGVP  133 (176)
T ss_dssp             SCC--------HHHHHHHHTTSCT--TTCEEEECSCC
T ss_pred             CCc--------hHHHHHHHHHhhc--CCeEEEEEEcc
Confidence            222        1334555555544  15888887643

>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=82.96  E-value=0.58  Score=30.49  Aligned_cols=36  Identities=11%  Similarity=0.194  Sum_probs=31.9

Q ss_pred             CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127           49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT   87 (307)
Q Consensus        49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~   87 (307)
                      -|+|-++||..+|+   ....+.|+|..|...|+++...
T Consensus        29 ~~lt~~elA~~~g~---sretvsr~l~~l~~~glI~~~~   64 (80)
T d3e5ua1          29 MPLSQKSIGEITGV---HHVTVSRVLASLKRENILDKKK   64 (80)
T ss_dssp             SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC--
T ss_pred             eCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence            58999999999999   6799999999999999998763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.31  E-value=6.2  Score=27.59  Aligned_cols=80  Identities=15%  Similarity=0.164  Sum_probs=49.8

Q ss_pred             eEEEecCCchHHHHHHHHHC--CCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC-------CCCccEEEechhhccC
Q 037127          199 SLVDVGGATGTVAKAIAKAF--PNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA-------IPPADAVVLKWILHDW  268 (307)
Q Consensus       199 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~-------~p~~D~i~~~~vLh~~  268 (307)
                      +|+=+|+|  .++..+++..  .+..++++|. |+.++.+.+. -.+.++.||..++       ...+|.++..     .
T Consensus         2 ~IvI~G~G--~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t   73 (132)
T d1lssa_           2 YIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-IDALVINGDCTKIKTLEDAGIEDADMYIAV-----T   73 (132)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-CSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----C
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-hhhhhccCcccchhhhhhcChhhhhhhccc-----C
Confidence            46666764  4444444332  2568999998 7777776532 2577889999873       2257877763     2


Q ss_pred             ChhHHHHHHHHHHHhccC
Q 037127          269 NDEECVKILKKCKEAITS  286 (307)
Q Consensus       269 ~~~~~~~~L~~~~~~L~p  286 (307)
                      ++++...++....+.+.+
T Consensus        74 ~~d~~N~~~~~~~k~~~~   91 (132)
T d1lssa_          74 GKEEVNLMSSLLAKSYGI   91 (132)
T ss_dssp             SCHHHHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHHHHHHcCC
Confidence            344444455666677776

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.98  E-value=3.3  Score=30.32  Aligned_cols=99  Identities=18%  Similarity=0.199  Sum_probs=55.3

Q ss_pred             CeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHH-Hhchh-------cCCCeEEEecCCCCCCCCccEEEechhhcc
Q 037127          198 NSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVV-NGLES-------DLANLKYVGGDMFEAIPPADAVVLKWILHD  267 (307)
Q Consensus       198 ~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~-~~a~~-------~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~  267 (307)
                      .+|.=||+| .|.....++...+=.+.+++|. +... ..+..       ...+..+...+-.+...++|++++.--...
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~~   83 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTK   83 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEeccccc
Confidence            467888987 3444444455544447899997 3221 22221       234555555555555667898877665433


Q ss_pred             CC--------h----hHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127          268 WN--------D----EECVKILKKCKEAITSNSKIGKVIII  296 (307)
Q Consensus       268 ~~--------~----~~~~~~L~~~~~~L~p~~~gg~lli~  296 (307)
                      -+        .    ....++++.+.+.++...|.+.++++
T Consensus        84 ~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivv  124 (150)
T d1t2da1          84 APGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVV  124 (150)
T ss_dssp             CTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred             CCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            22        1    23456777776666522237877765