Citrus Sinensis ID: 037141

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MIKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHAFDLCQDVKIFAFIDN
Secondary Structure (PSIPRED)
ccccccccEEEcccccHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHcccccccccccccccHHHHHHHccccccccccccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHcccccccccccccccEEEEEEccHHHHHHccccHHHHHHcccHccc
Coil and Loop (DISEMBL)
miktncsntilsssscsrlfnlKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKikenynpatwisqftspsaegqhafdlcqdvkiFAFIDN
Flexible Loop (DISEMBL)
miktncsntilsssscsrlfNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHAFDLCQDVKIFAFIDN
Low Complexity Region (SEG)
MIKtncsntilsssscsRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHAFDLCQDVKIFAFIDN
Disordered region (IsUnstruct)
**************SCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHAFDLCQDVKIFAFI**
Disordered Region (DISOPRED)
*IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHAFDLCQDVKIFA*I**
Disordered Region (DISEMBL)
MIKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHAFDLCQDVKIFAFIDN
Disordered Region (DISPRO)
*IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHAFDLCQDVKIFAFI**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHAFDLCQDVKIFAFIDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q7PC87	1453	ABC transporter G family	yes	no	0.693	0.046	0.514	6e-15
Q7PC84	1454	ABC transporter G family	no	no	0.693	0.046	0.5	1e-14
Q7PC82	1392	ABC transporter G family	no	no	0.663	0.046	0.584	3e-14
Q7PC81	1390	ABC transporter G family	no	no	0.663	0.046	0.569	7e-14
Q94A18	1416	ABC transporter G family	no	no	0.693	0.048	0.5	9e-14
Q8GU89	1450	Pleiotropic drug resistan	no	no	0.663	0.044	0.538	1e-13
Q8GZ52	1400	ABC transporter G family	no	no	0.693	0.048	0.529	2e-13
Q9XIE2	1469	ABC transporter G family	no	no	0.663	0.044	0.523	3e-13
Q5Z9S8	1500	Pleiotropic drug resistan	no	no	0.693	0.045	0.485	6e-13
Q5W274	1447	Pleiotropic drug resistan	N/A	no	0.693	0.046	0.5	6e-13

>sp|Q7PC87|AB34G_ARATH ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 46/68 (67%)

Query: 21   NLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEG 80
            +  +L+LMKRGG++IY   LG +S KL+E FE   GV KIK+ YNPATW+   T+PS E 
Sbjct: 1070 SFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMES 1129

Query: 81   QHAFDLCQ 88
            Q + D  Q
Sbjct: 1130 QMSVDFAQ 1137

May be a general defense protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC84|AB39G_ARATH ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 45/68 (66%)

Query: 21   NLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEG 80
            +  +L+LMKRGG++IY   LG +S KL+E FE   GV KI + YNPATW+   T+PS E 
Sbjct: 1071 SFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMES 1130

Query: 81   QHAFDLCQ 88
            Q + D  Q
Sbjct: 1131 QMSLDFAQ 1138

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 46/65 (70%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+LMK GGKIIY+  LGQ+SSK+IE F    GV K+KEN NPATWI   TS S+E +  
Sbjct: 1013 ELILMKNGGKIIYYGPLGQHSSKVIEYFMRIHGVPKLKENSNPATWILDITSKSSEDKLG 1072

Query: 84   FDLCQ 88
             DL Q
Sbjct: 1073 VDLAQ 1077

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC81|AB43G_ARATH ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 45/65 (69%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+LMK GGKIIY+  LGQ+SSK+IE F    GV K+KEN NPATWI   TS S+E +  
Sbjct: 1011 ELILMKNGGKIIYYGPLGQHSSKVIEYFMSIPGVPKLKENSNPATWILDITSKSSEDKLG 1070

Query: 84   FDLCQ 88
             DL  
Sbjct: 1071 VDLAH 1075

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94A18|AB29G_ARATH ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 47/68 (69%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+L+KRGG++IY   LGQNS K+IE F+   GV KIKE YNPATW+ + +S +AE +  
Sbjct: 1035 ELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLE 1094

Query: 84   FDLCQDVK 91
             D  +  K
Sbjct: 1095 IDFAEHYK 1102

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 44/65 (67%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L LMKRGG+ IY   +GQNSSKLIE FEG  GV +IK+ YNPATW+ + TS + E    
Sbjct: 1073 ELFLMKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLG 1132

Query: 84   FDLCQ 88
             D  +
Sbjct: 1133 VDFSE 1137

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GZ52|AB30G_ARATH ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 47/68 (69%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+LMK GG+++Y+   GQNSSK+IE FE  SG+ KI++N NPATWI   TS SAE +  
Sbjct: 1021 ELILMKNGGQLVYYGPPGQNSSKVIEYFESFSGLPKIQKNCNPATWILDITSKSAEEKLG 1080

Query: 84   FDLCQDVK 91
             D  Q  K
Sbjct: 1081 IDFSQSYK 1088

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIE2|AB36G_ARATH ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 46/65 (70%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +LMLMKRGG++IY   LGQNS K++E FE   GV KI E YNPATW+ + +S +AE + +
Sbjct: 1088 ELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLS 1147

Query: 84   FDLCQ 88
             D  +
Sbjct: 1148 VDFAE 1152

Key factor that controls the extent of cell death in the defense response. Neccessary for both callose deposition and glucosinolate activation in response to pathogens. Required for limiting invasion by nonadapted powdery mildews. Confers resistance to cadmium (Cd) and lead (Pb), probably as an efflux pump of Cd2+ or Cd conjugates, and possibly, of chemicals that mediate pathogen resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z9S8|PDR12_ORYSJ Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 48/68 (70%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+L+KRGG++IY  +LG+NS K+IE FE   GV KIK+ YNPATW+ + +S +AE +  
Sbjct: 1120 ELLLLKRGGQVIYSGQLGRNSQKMIEYFEAIPGVPKIKDKYNPATWMLEVSSVAAEVRLN 1179

Query: 84   FDLCQDVK 91
             D  +  K
Sbjct: 1180 MDFAEYYK 1187

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 48/68 (70%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+L+K GG++IY+  LG+NS K+IE FEG S V KIK N+NPATW+ + TS S+E   +
Sbjct: 1068 ELILLKTGGRMIYWGHLGRNSCKMIEYFEGISCVPKIKNNHNPATWMLEVTSTSSEADIS 1127

Query: 84   FDLCQDVK 91
             D  +  K
Sbjct: 1128 IDFAEVYK 1135

May be a general defense protein.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
224064738	1368	predicted protein [Populus trichocarpa]	0.714	0.051	0.589	6e-15
297838415	1450	ATPDR11/PDR11 [Arabidopsis lyrata subsp.	0.724	0.048	0.513	1e-13
297823451	1452	ATPDR6/PDR6 [Arabidopsis lyrata subsp. l	0.724	0.048	0.513	1e-13
42569669	1453	ABC transporter G family member 34 [Arab	0.693	0.046	0.514	2e-13
4581139	1450	putative ABC transporter [Arabidopsis th	0.693	0.046	0.514	2e-13
224108860	1362	predicted protein [Populus trichocarpa]	0.663	0.047	0.584	3e-13
449516417	1475	PREDICTED: LOW QUALITY PROTEIN: ABC tran	0.693	0.046	0.529	3e-13
449466941	1475	PREDICTED: ABC transporter G family memb	0.693	0.046	0.529	3e-13
256538309	1475	pleiotropic drug resistance protein [Cuc	0.693	0.046	0.529	3e-13
147780242	1417	hypothetical protein VITISV_037751 [Viti	0.765	0.052	0.506	3e-13

>gi|224064738|ref|XP_002301544.1| predicted protein [Populus trichocarpa] gi|222843270|gb|EEE80817.1| predicted protein [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 52/73 (71%), Gaps = 3/73 (4%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+LMKRGG+IIY  ELGQNSSKLIE FEG  GV KIKEN+NPATW+ + T  S E +  
Sbjct: 989  ELILMKRGGQIIYSGELGQNSSKLIEYFEGIHGVPKIKENHNPATWMLEVTGSSMEARLG 1048

Query: 84   FD---LCQDVKIF 93
             D   L +D  +F
Sbjct: 1049 LDFANLYRDSHLF 1061

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838415|ref|XP_002887089.1| ATPDR11/PDR11 [Arabidopsis lyrata subsp. lyrata] gi|297332930|gb|EFH63348.1| ATPDR11/PDR11 [Arabidopsis lyrata subsp. lyrata]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 3/74 (4%)

Query: 21   NLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEG 80
            +  +L+LMKRGG++IY   LG  S KL+E FE   GV KIK+ YNPATW+   T+PS E 
Sbjct: 1067 SFDELLLMKRGGQVIYAGSLGHQSQKLVEYFEAVEGVPKIKDGYNPATWMLDVTTPSIES 1126

Query: 81   QHAFDLCQDVKIFA 94
            Q + D  Q   IFA
Sbjct: 1127 QMSLDFAQ---IFA 1137

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823451|ref|XP_002879608.1| ATPDR6/PDR6 [Arabidopsis lyrata subsp. lyrata] gi|297325447|gb|EFH55867.1| ATPDR6/PDR6 [Arabidopsis lyrata subsp. lyrata]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 49/74 (66%), Gaps = 3/74 (4%)

Query: 21   NLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEG 80
            +  +L+LMKRGG++IY   LG +S KL+E FE   GV KIK+ YNPATW+   T+PS E 
Sbjct: 1069 SFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMES 1128

Query: 81   QHAFDLCQDVKIFA 94
            Q + D  Q   IFA
Sbjct: 1129 QMSMDFAQ---IFA 1139

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569669|ref|NP_181179.2| ABC transporter G family member 34 [Arabidopsis thaliana] gi|75326885|sp|Q7PC87.1|AB34G_ARATH RecName: Full=ABC transporter G family member 34; Short=ABC transporter ABCG.34; Short=AtABCG34; AltName: Full=Pleiotropic drug resistance protein 6 gi|28144329|tpg|DAA00874.1| TPA_exp: PDR6 ABC transporter [Arabidopsis thaliana] gi|330254152|gb|AEC09246.1| ABC transporter G family member 34 [Arabidopsis thaliana]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 46/68 (67%)

Query: 21   NLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEG 80
            +  +L+LMKRGG++IY   LG +S KL+E FE   GV KIK+ YNPATW+   T+PS E 
Sbjct: 1070 SFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMES 1129

Query: 81   QHAFDLCQ 88
            Q + D  Q
Sbjct: 1130 QMSVDFAQ 1137

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4581139|gb|AAD24623.1| putative ABC transporter [Arabidopsis thaliana] gi|20197934|gb|AAM15320.1| putative ABC transporter [Arabidopsis thaliana]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 46/68 (67%)

Query: 21   NLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEG 80
            +  +L+LMKRGG++IY   LG +S KL+E FE   GV KIK+ YNPATW+   T+PS E 
Sbjct: 1067 SFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMES 1126

Query: 81   QHAFDLCQ 88
            Q + D  Q
Sbjct: 1127 QMSVDFAQ 1134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108860|ref|XP_002314994.1| predicted protein [Populus trichocarpa] gi|222864034|gb|EEF01165.1| predicted protein [Populus trichocarpa]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 46/65 (70%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+LMKRGG IIY   LG +S KLIE FEG SGV KIK+NYNPATW+ + TS S E +  
Sbjct: 983  ELILMKRGGMIIYSGMLGHHSCKLIEYFEGISGVPKIKDNYNPATWMLEVTSASMESELE 1042

Query: 84   FDLCQ 88
             D  +
Sbjct: 1043 LDFAK 1047

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516417|ref|XP_004165243.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 36-like [Cucumis sativus]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 48/68 (70%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+LMKRGG++IYF  LG+NS K+IE FE   GV KIKE YNPATW+ + +S +AE +  
Sbjct: 1094 ELLLMKRGGQVIYFGPLGRNSQKIIEYFESIPGVPKIKEKYNPATWMLEVSSVAAEVRLG 1153

Query: 84   FDLCQDVK 91
             D  +  K
Sbjct: 1154 MDFAEHYK 1161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466941|ref|XP_004151184.1| PREDICTED: ABC transporter G family member 36-like [Cucumis sativus]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 48/68 (70%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+LMKRGG++IYF  LG+NS K+IE FE   GV KIKE YNPATW+ + +S +AE +  
Sbjct: 1094 ELLLMKRGGQVIYFGPLGRNSQKIIEYFESIPGVPKIKEKYNPATWMLEVSSVAAEVRLG 1153

Query: 84   FDLCQDVK 91
             D  +  K
Sbjct: 1154 MDFAEHYK 1161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|256538309|gb|ACU82514.1| pleiotropic drug resistance protein [Cucumis sativus]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 48/68 (70%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+LMKRGG++IYF  LG+NS K+IE FE   GV KIKE YNPATW+ + +S +AE +  
Sbjct: 1094 ELLLMKRGGQVIYFGPLGRNSQKIIEYFESIPGVPKIKEKYNPATWMLEVSSVAAEVRLG 1153

Query: 84   FDLCQDVK 91
             D  +  K
Sbjct: 1154 MDFAEHYK 1161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780242|emb|CAN65735.1| hypothetical protein VITISV_037751 [Vitis vinifera]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/75 (50%), Positives = 50/75 (66%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+L+K GG +IY   LGQ+SS++IE FEG  GV KI+ NYNPATW+ + TS SAE +  
Sbjct: 1038 ELILLKTGGHLIYCGPLGQHSSRVIEYFEGIPGVPKIRNNYNPATWMLEVTSASAEAELG 1097

Query: 84   FDLCQDVKIFAFIDN 98
             D  Q  K  A  +N
Sbjct: 1098 IDFAQIYKDSALYEN 1112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:2044893	1453	ABCG34 "ATP-binding cassette G	0.663	0.044	0.538	5.2e-13
TAIR|locus:2019693	1454	ABCG39 "ATP-binding cassette G	0.663	0.044	0.523	8.5e-13
TAIR|locus:2094952	1416	ABCG29 "ATP-binding cassette G	0.693	0.048	0.5	3.6e-12
TAIR|locus:2025931	1469	PEN3 "PENETRATION 3" [Arabidop	0.663	0.044	0.523	2.1e-11
TAIR|locus:2037703	1442	ABCG35 "ATP-binding cassette G	0.724	0.049	0.478	2.4e-10
TAIR|locus:2049867	1413	ABCG33 "ATP-binding cassette G	0.663	0.046	0.476	2.9e-10
TAIR|locus:2045683	1426	ABCG31 "ATP-binding cassette G	0.602	0.041	0.457	1.6e-09
TAIR|locus:2084081	1450	ABCG37 "ATP-binding cassette G	0.663	0.044	0.446	4.5e-09
TAIR|locus:2196593	1423	ABCG40 "ATP-binding cassette G	0.693	0.047	0.441	7.2e-09
TAIR|locus:2039523	1420	ABCG32 "ATP-binding cassette G	0.663	0.045	0.430	1.2e-08

TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 35/65 (53%), Positives = 45/65 (69%)

Query:    24 DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
             +L+LMKRGG++IY   LG +S KL+E FE   GV KIK+ YNPATW+   T+PS E Q +
Sbjct:  1073 ELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMS 1132

Query:    84 FDLCQ 88
              D  Q
Sbjct:  1133 VDFAQ 1137

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 34/65 (52%), Positives = 44/65 (67%)

Query:    24 DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
             +L+LMKRGG++IY   LG +S KL+E FE   GV KI + YNPATW+   T+PS E Q +
Sbjct:  1074 ELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMS 1133

Query:    84 FDLCQ 88
              D  Q
Sbjct:  1134 LDFAQ 1138

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS;IMP

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 34/68 (50%), Positives = 47/68 (69%)

Query:    24 DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
             +L+L+KRGG++IY   LGQNS K+IE F+   GV KIKE YNPATW+ + +S +AE +  
Sbjct:  1035 ELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLE 1094

Query:    84 FDLCQDVK 91
              D  +  K
Sbjct:  1095 IDFAEHYK 1102

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015850 "organic hydroxy compound transport" evidence=IDA

GO:1901140 "p-coumaryl alcohol transport" evidence=IDA

GO:1901141 "regulation of lignin biosynthetic process" evidence=IMP

TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 34/65 (52%), Positives = 46/65 (70%)

Query:    24 DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
             +LMLMKRGG++IY   LGQNS K++E FE   GV KI E YNPATW+ + +S +AE + +
Sbjct:  1088 ELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLS 1147

Query:    84 FDLCQ 88
              D  +
Sbjct:  1148 VDFAE 1152

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA;IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0031348 "negative regulation of defense response" evidence=RCA;IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA

GO:0015691 "cadmium ion transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0042344 "indole glucosinolate catabolic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0071366 "cellular response to indolebutyric acid stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 34/71 (47%), Positives = 46/71 (64%)

Query:    24 DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
             +L+LMKRGG +IY   LG+NS K++E FE   GV KI E YNPATW+ + +S +AE +  
Sbjct:  1061 ELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWMLEASSLAAELKLG 1120

Query:    84 FDLCQDVKIFA 94
              D  +  K  A
Sbjct:  1121 VDFAELYKASA 1131

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 31/65 (47%), Positives = 45/65 (69%)

Query:    24 DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
             +L+L+KRGG++IY   LGQ+SS +IE F+   GV KI++ YNPATW+ + TS S E +  
Sbjct:  1034 ELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATWMLEVTSESVETELD 1093

Query:    84 FDLCQ 88
              D  +
Sbjct:  1094 MDFAK 1098

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 27/59 (45%), Positives = 43/59 (72%)

Query:    24 DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQH 82
             +L+LMKRGG++IY  +LG +S  L++ F+G +GV  I   YNPATW+ + T+P+ E ++
Sbjct:  1047 ELLLMKRGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVTTPALEEKY 1105

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 29/65 (44%), Positives = 43/65 (66%)

Query:    24 DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
             +L+L+KRGG++IY   LGQ+S  +IE FE    + KIK+N+NPATW+   +S S E +  
Sbjct:  1071 ELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELG 1130

Query:    84 FDLCQ 88
              D  +
Sbjct:  1131 VDFAK 1135

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005215 "transporter activity" evidence=IDA

GO:0009926 "auxin polar transport" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0071366 "cellular response to indolebutyric acid stimulus" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 30/68 (44%), Positives = 39/68 (57%)

Query:    24 DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
             +L L+KRGG+ IY   LG  S+ LI  FE   G+ KI E YNPATW+ + ++ S E    
Sbjct:  1046 ELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALG 1105

Query:    84 FDLCQDVK 91
              D  Q  K
Sbjct:  1106 VDFAQVYK 1113

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0015692 "lead ion transport" evidence=IMP

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=RCA;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=TAS

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA;TAS

GO:0010193 "response to ozone" evidence=IEP

GO:0046865 "terpenoid transport" evidence=IDA

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query:    24 DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
             +L+ MKRGG++IY   LGQ S +LI+ FE   GV+KIK  +NPA W+   T+ + E +  
Sbjct:  1039 ELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLG 1098

Query:    84 FDLCQ 88
              D  +
Sbjct:  1099 VDFAE 1103

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0042335 "cuticle development" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II001891 hypothetical protein (1368 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-19
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	6e-14

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 81.0 bits (200), Expect = 2e-19
 Identities = 35/68 (51%), Positives = 47/68 (69%)

Query: 24   DLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            +L+LMKRGG++IY   LG+NS K+IE FE   GV KIKE YNPATW+ + +S +AE +  
Sbjct: 1089 ELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLG 1148

Query: 84   FDLCQDVK 91
             D  +  K
Sbjct: 1149 IDFAEHYK 1156

Length = 1470

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 65.5 bits (160), Expect = 6e-14
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 25   LMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHA 83
            L+L+++GG+ +YF +LG+NS  +I  FE   G  K  E+ NPA W+ +    +A G HA
Sbjct: 973  LLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIG-AAPGAHA 1029

[Transport and binding proteins, Other]. Length = 1394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.95
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.86
PLN03140	1470	ABC transporter G family member; Provisional	99.81
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.78
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.69
PLN03140	1470	ABC transporter G family member; Provisional	99.68
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.67
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.63
PLN03211	659	ABC transporter G-25; Provisional	99.61
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.31
cd03234	226	ABCG_White The White subfamily represents ABC tran	96.16
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.11
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	96.08
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.18
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	95.14
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	95.06
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	95.02
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	94.36
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	94.35
PRK13537	306	nodulation ABC transporter NodI; Provisional	94.16
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	94.06
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	94.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	93.95
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	93.85
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	93.77
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	93.75
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	93.71
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	93.63
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	93.57
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	93.55
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	93.54
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	93.5
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	93.46
PRK13536	340	nodulation factor exporter subunit NodI; Provision	93.37
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	93.35
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	93.34
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	93.32
COG3638	258	ABC-type phosphate/phosphonate transport system, A	93.3
cd03299	235	ABC_ModC_like Archeal protein closely related to M	93.3
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	93.27
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	93.25
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	93.24
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	93.2
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	93.16
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	93.16
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	93.16
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	93.15
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	93.15
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	93.12
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	93.12
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	93.12
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	93.12
COG4152	300	ABC-type uncharacterized transport system, ATPase	93.1
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	93.1
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	93.06
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	93.05
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	93.02
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	93.01
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	92.99
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	92.96
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	92.94
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	92.94
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	92.9
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	92.85
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	92.84
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	92.83
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	92.83
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	92.82
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	92.74
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	92.72
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	92.69
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	92.68
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	92.56
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	92.53
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	92.52
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	92.51
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	92.49
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	92.39
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	92.37
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	92.29
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	92.27
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	92.24
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	92.24
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	92.24
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	92.18
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	92.16
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	92.08
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	92.08
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	92.07
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	92.06
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	92.02
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	91.96
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	91.91
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	91.9
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	91.82
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	91.81
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	91.77
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	91.75
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	91.75
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	91.75
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	91.68
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	91.66
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	91.57
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	91.53
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	91.51
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	91.5
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	91.48
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	91.47
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	91.43
cd03269	210	ABC_putative_ATPase This subfamily is involved in	91.42
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	91.42
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	91.42
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	91.37
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	91.32
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	91.31
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	91.29
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	91.19
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	91.14
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	91.14
PRK03695	248	vitamin B12-transporter ATPase; Provisional	91.09
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	91.05
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	91.05
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	91.03
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	90.98
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	90.96
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	90.92
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	90.88
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	90.88
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	90.84
PRK09984	262	phosphonate/organophosphate ester transporter subu	90.81
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	90.68
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	90.58
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	90.51
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	90.49
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	90.49
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	90.46
PRK13546	264	teichoic acids export protein ATP-binding subunit;	90.45
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	90.32
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	90.23
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	90.21
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	90.17
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	90.15
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	90.06
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	90.05
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	90.04
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	89.97
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	89.91
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	89.89
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	89.87
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	89.87
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	89.84
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	89.83
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	89.81
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	89.72
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	89.53
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	89.5
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	89.46
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	89.43
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	89.29
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	89.24
PTZ00243	1560	ABC transporter; Provisional	89.19
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	89.17
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	89.17
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	89.16
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	89.1
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	89.07
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	89.03
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	89.01
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	88.97
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	88.94
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	88.86
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	88.84
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	88.83
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	88.77
PLN03232	1495	ABC transporter C family member; Provisional	88.73
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	88.7
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	88.69
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	88.68
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	88.57
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	88.56
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	88.51
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	88.41
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	88.38
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	88.28
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	88.22
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	88.22
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	88.08
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	88.08
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	87.99
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	87.98
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	87.96
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	87.88
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	87.88
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	87.87
PLN03130	1622	ABC transporter C family member; Provisional	87.77
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	87.66
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	87.56
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	87.53
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	87.49
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	87.47
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	87.46
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	87.33
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	87.3
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	87.22
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	87.07
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	86.7
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	86.7
cd03216	163	ABC_Carb_Monos_I This family represents the domain	86.58
PLN03232	1495	ABC transporter C family member; Provisional	86.47
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	86.4
PLN03130	1622	ABC transporter C family member; Provisional	86.35
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	86.3
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	86.26
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	86.21
PRK10938	490	putative molybdenum transport ATP-binding protein	85.94
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	85.86
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	85.81
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	85.56
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	85.53
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	85.47
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	85.22
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	85.2
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	85.18
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	85.16
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	85.13
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	85.1
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	84.97
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	84.82
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	84.81
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	84.53
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	84.32
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	83.99
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	83.73
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	83.69
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	83.45
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	83.41
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	83.36
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	83.35
COG4586	325	ABC-type uncharacterized transport system, ATPase	82.95
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	82.8
PRK10535	648	macrolide transporter ATP-binding /permease protei	82.76
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	82.23
PRK10522	547	multidrug transporter membrane component/ATP-bindi	81.85
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	81.76
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	81.47
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	81.31
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	81.27
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	81.2
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	80.81
COG1127	263	Ttg2A ABC-type transport system involved in resist	80.48
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	80.35
COG4987	573	CydC ABC-type transport system involved in cytochr	80.34
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	80.26
KOG0054	1381	consensus Multidrug resistance-associated protein/	80.23

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.95  E-value=3.7e-28  Score=205.17  Aligned_cols=94  Identities=33%  Similarity=0.492  Sum_probs=87.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCCCCCc
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQH   82 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~~~~~   82 (98)
                      -||||+|||||||.+||+.||+|++|++||++||+|+.+++|+.+++||+++-|. +|++..|||||++|+++...+...
T Consensus       979 tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~ 1057 (1391)
T KOG0065|consen  979 TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASL 1057 (1391)
T ss_pred             cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhccccccccc
Confidence            4899999999999999999999999999999999999999999999999996556 699988999999999999888877


Q ss_pred             hhcHHHHHhhccccC
Q 037141           83 AFDLCQDVKIFAFID   97 (98)
Q Consensus        83 ~~~~~~~~~~S~~~~   97 (98)
                      ..||+++|++|..|.
T Consensus      1058 ~~D~a~~w~~S~e~k 1072 (1391)
T KOG0065|consen 1058 SVDFAEIWKNSEEYK 1072 (1391)
T ss_pred             CccHHHHHhccHHHH
Confidence            889999999998774

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.86  E-value=3.9e-22  Score=160.73  Aligned_cols=68  Identities=21%  Similarity=0.314  Sum_probs=64.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPS   77 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~   77 (98)
                      +||||||||||||+++|++||++++|++ |++||+|++.    ++.+||++ .|+ +||++.||+||++|+++..
T Consensus       219 ~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G~~~----~~~~ff~~-~G~-~~P~~~Npadf~l~l~s~~  286 (613)
T KOG0061|consen  219 SGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSGSPR----ELLEFFSS-LGF-PCPELENPADFLLDLLSVD  286 (613)
T ss_pred             CCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEecCHH----HHHHHHHh-CCC-CCCCcCChHHHHHHHHccC
Confidence            5999999999999999999999999998 8999999987    79999999 699 5999999999999998864

>PLN03140 ABC transporter G family member; Provisional

Probab=99.81  E-value=8.3e-20  Score=157.89  Aligned_cols=94  Identities=38%  Similarity=0.603  Sum_probs=83.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCCCCCc
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQH   82 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~~~~~   82 (98)
                      +|+||||++|||+.+++++||++++|++||+++|+|+.+++++++++||+++.|+++||++.|||||++|+++...+.+.
T Consensus      1068 ~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~ 1147 (1470)
T PLN03140       1068 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKL 1147 (1470)
T ss_pred             CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccc
Confidence            47999999999999999999999999987999999999888889999999953665699999999999999887655555


Q ss_pred             hhcHHHHHhhcccc
Q 037141           83 AFDLCQDVKIFAFI   96 (98)
Q Consensus        83 ~~~~~~~~~~S~~~   96 (98)
                      ..||++.|++|+.|
T Consensus      1148 ~~d~~~~~~~s~~~ 1161 (1470)
T PLN03140       1148 GIDFAEHYKSSSLY 1161 (1470)
T ss_pred             cchHHHHHhccHHH
Confidence            67999999999865

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.78  E-value=3.8e-19  Score=153.25  Aligned_cols=93  Identities=24%  Similarity=0.420  Sum_probs=82.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCCCCCc
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQH   82 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~~~~~   82 (98)
                      +|+|||+++|||+..++++||++++|++||+++|+|+++++++++++||++ .|+++||++.|||||++|+++...+...
T Consensus       951 ~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~-~G~~~~p~~~NpAd~~ldvi~~~~~~~~ 1029 (1394)
T TIGR00956       951 HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEK-HGAPKCPEDANPAEWMLEVIGAAPGAHA 1029 (1394)
T ss_pred             cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHh-cCCCCCCCCCCHHHHHHHHhhcccccch
Confidence            589999999999999999999999999867999999998877899999999 6964699999999999999887655444


Q ss_pred             hhcHHHHHhhcccc
Q 037141           83 AFDLCQDVKIFAFI   96 (98)
Q Consensus        83 ~~~~~~~~~~S~~~   96 (98)
                      ..+|.+.|++|+.+
T Consensus      1030 ~~~~~~~~~~s~~~ 1043 (1394)
T TIGR00956      1030 NQDYHEVWRNSSEY 1043 (1394)
T ss_pred             hccHHHHHhcCHHH
Confidence            56899999988654

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.69  E-value=5.5e-17  Score=130.59  Aligned_cols=87  Identities=18%  Similarity=0.307  Sum_probs=74.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCCCCC-
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQ-   81 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~~~~-   81 (98)
                      +++|||+++|||+.+++++||++++|++ |+++|.|+..    ++.+||++ .|+ +||++.|||||++++++...+.. 
T Consensus       215 ~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~----~~~~~f~~-~g~-~~p~~~n~ad~~~~~~~~~~~~~~  287 (617)
T TIGR00955       215 KGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPD----QAVPFFSD-LGH-PCPENYNPADFYVQVLAVIPGSEN  287 (617)
T ss_pred             CCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHH----HHHHHHHH-cCC-CCCCCCChHHHHHHHhhcCccccc
Confidence            5899999999999999999999999996 8999999987    79999999 699 69999999999999987654322 


Q ss_pred             ----chhcHHHHHhhcccc
Q 037141           82 ----HAFDLCQDVKIFAFI   96 (98)
Q Consensus        82 ----~~~~~~~~~~~S~~~   96 (98)
                          ...++.+.|++|+++
T Consensus       288 ~~~~~~~~~~~~~~~s~~~  306 (617)
T TIGR00955       288 ESRERIEKICDSFAVSDIG  306 (617)
T ss_pred             chHHHHHHHHHHHhcchhh
Confidence                124677778776554

>PLN03140 ABC transporter G family member; Provisional

Probab=99.68  E-value=7.7e-17  Score=139.71  Aligned_cols=87  Identities=20%  Similarity=0.289  Sum_probs=75.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCCC---
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAE---   79 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~~---   79 (98)
                      .++|||+++|||+.+++++||++++|++ |+++|+|+..    ++.+||++ +|+ +||++.|||||++++++....   
T Consensus       386 ~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~~----~~~~yF~~-lGf-~cP~~~n~ADFl~~v~s~~~~~~~  458 (1470)
T PLN03140        386 TEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPRD----HILEFFES-CGF-KCPERKGTADFLQEVTSKKDQEQY  458 (1470)
T ss_pred             cCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCHH----HHHHHHHH-cCC-CCCCCCChHHHHHHhcCchhhhhh
Confidence            4789999999999999999999999997 8999999976    79999999 699 699999999999999886321   


Q ss_pred             ------C---CchhcHHHHHhhcccc
Q 037141           80 ------G---QHAFDLCQDVKIFAFI   96 (98)
Q Consensus        80 ------~---~~~~~~~~~~~~S~~~   96 (98)
                            .   .+..+|++.|++|..+
T Consensus       459 ~~~~~~p~~~~~~~~~~~~~~~s~~~  484 (1470)
T PLN03140        459 WADRNKPYRYISVSEFAERFKSFHVG  484 (1470)
T ss_pred             hhccCCccccCCHHHHHHHHHhcHHH
Confidence                  0   2357899999998654

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.67  E-value=1.6e-16  Score=137.16  Aligned_cols=87  Identities=16%  Similarity=0.183  Sum_probs=76.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCC----
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSA----   78 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~----   78 (98)
                      .|+|||+++|||+.+++++||++++|.+ |+++|+|+..    ++.+||++ +|+ +||++.|||||++++++...    
T Consensus       259 ~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~~----~~~~yF~~-lG~-~~p~~~n~aDfl~~~~~~~~~~~~  331 (1394)
T TIGR00956       259 LDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPAD----KAKQYFEK-MGF-KCPDRQTTADFLTSLTSPAERQIK  331 (1394)
T ss_pred             cCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCHH----HHHHHHHH-cCC-CCCCCCChHHHHHhccChhhhhcc
Confidence            3799999999999999999999999997 8999999976    79999999 699 69999999999999987542    


Q ss_pred             ------CCCchhcHHHHHhhcccc
Q 037141           79 ------EGQHAFDLCQDVKIFAFI   96 (98)
Q Consensus        79 ------~~~~~~~~~~~~~~S~~~   96 (98)
                            ..+...+|++.|++|+.|
T Consensus       332 ~~~e~~~~~~~~~~~~~~~~s~~~  355 (1394)
T TIGR00956       332 PGYEKKVPRTPQEFETYWRNSPEY  355 (1394)
T ss_pred             ccccccCCCCHHHHHHHHHcCHHH
Confidence                  123457899999999765

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.63  E-value=5.9e-16  Score=131.93  Aligned_cols=89  Identities=16%  Similarity=0.149  Sum_probs=77.0

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCCC--
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAE--   79 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~~--   79 (98)
                      +-+.|++++|+||++++|++||+|+||+. |++||+||..    ++.+||++ +|+ .||+++++|||+.++++....  
T Consensus       309 ~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~d----~~~~yFe~-~Gf-~cP~r~~~ADfLt~vts~k~~~~  381 (1391)
T KOG0065|consen  309 ITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPRD----EVLPYFED-MGF-KCPPRKGTADFLTEVTSKKDQEQ  381 (1391)
T ss_pred             hhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccHH----HHHHHHHh-cCc-cCCCccCHHHHHHHhhcCccccc
Confidence            34789999999999999999999999998 9999999987    79999999 799 699999999999999983321  


Q ss_pred             ---------CC-chhcHHHHHhhccccC
Q 037141           80 ---------GQ-HAFDLCQDVKIFAFID   97 (98)
Q Consensus        80 ---------~~-~~~~~~~~~~~S~~~~   97 (98)
                               .. ...+|++.|++|+.|.
T Consensus       382 ~~~~~~~~~~~~~~~ef~~~~~~s~~~~  409 (1391)
T KOG0065|consen  382 YWNKRSKPYPYTSVSEFAEYFLNSEDYA  409 (1391)
T ss_pred             cccccCCCcccCCHHHHHHHHhcchhhH
Confidence                     11 2378999999988763

>PLN03211 ABC transporter G-25; Provisional

Probab=99.61  E-value=1.5e-15  Score=123.43  Aligned_cols=68  Identities=16%  Similarity=0.296  Sum_probs=63.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPS   77 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~   77 (98)
                      +++|||+++|||+.+++++||++++|++ |+++|.|+..    ++.+||++ .|+ +||.+.|||||++|+++..
T Consensus       255 ~g~TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~~----~~~~~f~~-~G~-~~P~~~NpADf~ldv~~~~  322 (659)
T PLN03211        255 KGKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKGS----DAMAYFES-VGF-SPSFPMNPADFLLDLANGV  322 (659)
T ss_pred             CCCEEEEEecCCCHHHHHhhceEEEecC-CcEEEECCHH----HHHHHHHH-CCC-CCCCCCCHHHHHHHHcCcc
Confidence            5899999999999999999999999997 8999999986    79999999 699 5999999999999998764

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.31  E-value=0.0079  Score=41.79  Aligned_cols=36  Identities=31%  Similarity=0.513  Sum_probs=31.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      +++|||++.|++...+...+|++++|..+|++++.|
T Consensus       157 ~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         157 SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            478999999999877888999999998548999876

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=96.16  E-value=0.01  Score=42.08  Aligned_cols=35  Identities=11%  Similarity=0.262  Sum_probs=31.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      ++.|||++.|++..++.+.+|++++|.. |++++.|
T Consensus       192 ~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g  226 (226)
T cd03234         192 RNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG  226 (226)
T ss_pred             CCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence            3689999999999999999999999997 8998765

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.11  E-value=0.012  Score=41.09  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=31.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      +++|||++-|++..++.+..|++++|.. |++++.|
T Consensus       160 ~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~  194 (194)
T cd03213         160 TGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG  194 (194)
T ss_pred             CCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence            4789999999999999999999999997 8988765

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=96.08  E-value=0.0085  Score=44.78  Aligned_cols=43  Identities=19%  Similarity=0.035  Sum_probs=33.8

Q ss_pred             ceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhh
Q 037141            5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEG   53 (98)
Q Consensus         5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~   53 (98)
                      +||++|.|++.. +..++|+|++|.+ |++++.|+..    .+...+..
T Consensus       188 ~tvlissH~l~e-~~~~~d~v~il~~-G~~~~~g~~~----~l~~~~~~  230 (293)
T COG1131         188 VTILLSTHILEE-AEELCDRVIILND-GKIIAEGTPE----ELKEKFGG  230 (293)
T ss_pred             cEEEEeCCcHHH-HHHhCCEEEEEeC-CEEEEeCCHH----HHHHhhcc
Confidence            799999998764 5666999999997 9999999765    45555443

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.18  E-value=0.032  Score=39.46  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=36.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhh
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEG   53 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~   53 (98)
                      +.+++|++-|.+. .+..+.|++++|.. |+.++.|+..    ++..+++.
T Consensus       152 ~~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~----~~~~~~~~  196 (213)
T PRK15177        152 QQKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDLA----QATALFEQ  196 (213)
T ss_pred             hCCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCHH----HHHHHHHH
Confidence            5678999999886 56678999999997 8999999987    56666554

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.14  E-value=0.041  Score=38.50  Aligned_cols=34  Identities=15%  Similarity=0.229  Sum_probs=30.2

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      +.|+|+++|+...++.+..|++++|.. |++++.|
T Consensus       169 ~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~g  202 (202)
T cd03233         169 KTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYYG  202 (202)
T ss_pred             CCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEecC
Confidence            568889999999999999999999997 8998765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.06  E-value=0.04  Score=40.74  Aligned_cols=58  Identities=9%  Similarity=0.067  Sum_probs=41.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHH---HHhhhhCCCCCCCCCCCChhh
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKL---IECFEGTSGVRKIKENYNPAT   68 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~---~~yf~~i~G~~~~p~~~npad   68 (98)
                      ++.|||++.|.+ ..+..+.|++++|.. |++++.|++.    ++   ...++. .|. .+|.....++
T Consensus       193 ~g~til~vtHd~-~~~~~~~dri~~l~~-G~i~~~g~~~----~~~~~~~~~~~-~~~-~~p~~~~~~~  253 (288)
T PRK13643        193 SGQTVVLVTHLM-DDVADYADYVYLLEK-GHIISCGTPS----DVFQEVDFLKA-HEL-GVPKATHFAD  253 (288)
T ss_pred             CCCEEEEEecCH-HHHHHhCCEEEEEEC-CEEEEECCHH----HHHcCHHHHHH-cCC-CCChHHHHHH
Confidence            378999999998 467788999999997 8999999865    22   234455 466 3555443333

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=95.02  E-value=0.043  Score=38.29  Aligned_cols=36  Identities=8%  Similarity=0.061  Sum_probs=30.2

Q ss_pred             CCceEEEEecCCcHHHHh-hccceEeecCCCeEEEecCC
Q 037141            3 KTNCSNTILSSSSCSRLF-NLKDLMLMKRGGKIIYFREL   40 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~-~FD~lllL~~gG~~vy~G~~   40 (98)
                      +++|||++-|++. .+.. ..|++++|.+ |+.+..|+.
T Consensus       153 ~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~~~  189 (200)
T cd03217         153 EGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSGDK  189 (200)
T ss_pred             CCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEccH
Confidence            3789999999987 4555 6999999997 899999854

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.36  E-value=0.067  Score=38.40  Aligned_cols=37  Identities=5%  Similarity=0.034  Sum_probs=31.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|++. .+.+..|++++|.. |+.++.|+.+
T Consensus       194 ~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~~  230 (250)
T PRK14245        194 KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDTK  230 (250)
T ss_pred             cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCHH
Confidence            4689999999888 46788999999997 8999999754

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=94.35  E-value=0.074  Score=37.82  Aligned_cols=37  Identities=5%  Similarity=-0.020  Sum_probs=31.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|++. ++.+..|++++|.+ |+.++.|+.+
T Consensus       186 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  222 (237)
T PRK11614        186 QGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLEDTGD  222 (237)
T ss_pred             CCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEeeCCHH
Confidence            4789999999874 67788999999997 8999999764

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=94.16  E-value=0.071  Score=39.89  Aligned_cols=37  Identities=8%  Similarity=-0.102  Sum_probs=32.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|+.. ++-.+.|++++|.. |+.++.|++.
T Consensus       187 ~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~~~  223 (306)
T PRK13537        187 RGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGAPH  223 (306)
T ss_pred             CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            4789999999987 67788999999997 8999999865

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.06  E-value=0.089  Score=37.77  Aligned_cols=37  Identities=11%  Similarity=0.100  Sum_probs=31.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|++. .+.+..|++++|.. |+++..|+..
T Consensus       197 ~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  233 (251)
T PRK14244        197 KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTTQ  233 (251)
T ss_pred             cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCHH
Confidence            4789999999988 67788999999997 8999998643

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.00  E-value=0.094  Score=38.48  Aligned_cols=36  Identities=8%  Similarity=0.008  Sum_probs=31.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|++. .+....|++++|.+ |+.++.|+..
T Consensus       188 g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~~  223 (277)
T PRK13652        188 GMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTVE  223 (277)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCHH
Confidence            789999999987 67788999999997 8999999765

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=93.95  E-value=0.094  Score=39.03  Aligned_cols=37  Identities=22%  Similarity=0.154  Sum_probs=32.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||+++|-+.- .+..-|++++|++ |+++..|.+.
T Consensus       188 ~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~G~p~  224 (258)
T COG1120         188 KGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQGTPE  224 (258)
T ss_pred             cCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEeecCcc
Confidence            58999999998865 4567899999997 9999999977

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=93.85  E-value=0.091  Score=36.64  Aligned_cols=33  Identities=9%  Similarity=0.115  Sum_probs=28.5

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      +.|||++-|++. .+....|++++|.. |+.+.+|
T Consensus       181 ~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g  213 (213)
T cd03301         181 GTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG  213 (213)
T ss_pred             CCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence            789999999985 66778999999987 8998876

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.77  E-value=0.1  Score=37.10  Aligned_cols=36  Identities=11%  Similarity=0.025  Sum_probs=31.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++-|.+. .+..+.|++++|.. |+.++.|+..
T Consensus       187 ~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~  222 (235)
T cd03261         187 GLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTPE  222 (235)
T ss_pred             CcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCHH
Confidence            789999999987 57788999999997 8999998753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=93.75  E-value=0.11  Score=36.67  Aligned_cols=35  Identities=6%  Similarity=0.038  Sum_probs=30.4

Q ss_pred             ceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +|||++.|.+. .+....|++++|.. |++++.|+..
T Consensus       191 ~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  225 (227)
T cd03260         191 YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPTE  225 (227)
T ss_pred             cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCcc
Confidence            78999999987 67788999999997 8999998764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=93.71  E-value=0.1  Score=36.92  Aligned_cols=37  Identities=5%  Similarity=0.007  Sum_probs=31.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. .+..+.|++++|.. |+.+..|+..
T Consensus       192 ~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  228 (236)
T cd03219         192 RGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTPD  228 (236)
T ss_pred             CCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCHH
Confidence            4789999999987 57788999999997 8999998753

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.63  E-value=0.11  Score=38.41  Aligned_cols=36  Identities=8%  Similarity=0.075  Sum_probs=31.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. .+..+.|++++|.+ |++++.|+..
T Consensus       196 g~tviiitHd~~-~~~~~~drv~~l~~-G~i~~~g~~~  231 (290)
T PRK13634        196 GLTTVLVTHSME-DAARYADQIVVMHK-GTVFLQGTPR  231 (290)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            789999999987 67888999999996 9999999754

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=93.57  E-value=0.12  Score=36.32  Aligned_cols=37  Identities=8%  Similarity=-0.053  Sum_probs=31.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|++. .+.+..|++++|.+ |+.+..|++.
T Consensus       173 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~  209 (223)
T TIGR03740       173 QGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN  209 (223)
T ss_pred             CCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence            3689999999987 57788999999997 8999999865

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=93.55  E-value=0.12  Score=37.02  Aligned_cols=37  Identities=8%  Similarity=-0.012  Sum_probs=31.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|.+. .+....|++++|.. |++++.|+..
T Consensus       196 ~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  232 (252)
T PRK14239        196 DDYTMLLVTRSMQ-QASRISDRTGFFLD-GDLIEYNDTK  232 (252)
T ss_pred             hCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            4579999999876 67888999999997 8999999754

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=93.54  E-value=0.13  Score=36.38  Aligned_cols=37  Identities=8%  Similarity=-0.069  Sum_probs=31.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+..+.|++++|.. |+.+..|+..
T Consensus       182 ~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  218 (232)
T cd03218         182 RGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTPE  218 (232)
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCHH
Confidence            3789999999987 78888999999996 8999998754

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=93.50  E-value=0.12  Score=36.50  Aligned_cols=36  Identities=8%  Similarity=-0.020  Sum_probs=30.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++-|++. .+..+.|++++|.. |+++..|+..
T Consensus       191 ~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  226 (233)
T cd03258         191 GLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTVE  226 (233)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence            789999999975 67788999999986 8999998643

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=93.46  E-value=0.13  Score=38.26  Aligned_cols=37  Identities=8%  Similarity=-0.091  Sum_probs=32.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. ++..+.|++++|.+ |++++.|+..
T Consensus       173 ~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~  209 (302)
T TIGR01188       173 EGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTPE  209 (302)
T ss_pred             CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            4789999999976 77888999999997 8999999764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=93.37  E-value=0.13  Score=39.26  Aligned_cols=37  Identities=8%  Similarity=-0.104  Sum_probs=32.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|... ++-++.|++++|.. |++++.|++.
T Consensus       221 ~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~~~  257 (340)
T PRK13536        221 RGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGRPH  257 (340)
T ss_pred             CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            4789999999885 78889999999997 8999999865

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=93.35  E-value=0.14  Score=38.13  Aligned_cols=37  Identities=8%  Similarity=-0.101  Sum_probs=32.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. ++.++.|++++|.. |+.++.|+..
T Consensus       184 ~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  220 (303)
T TIGR01288       184 RGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRPH  220 (303)
T ss_pred             CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            4789999999987 77788999999997 8999999765

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=93.34  E-value=0.14  Score=36.99  Aligned_cols=37  Identities=5%  Similarity=0.011  Sum_probs=31.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|++. .+.+..|++++|.. |+.+..|+..
T Consensus       186 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  222 (256)
T TIGR03873       186 TGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPR  222 (256)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHH
Confidence            3789999999988 66788999999997 8999999754

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=93.32  E-value=0.11  Score=37.01  Aligned_cols=35  Identities=6%  Similarity=0.114  Sum_probs=30.4

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL   40 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~   40 (98)
                      ++|||++-|.+. .+.+..|++++|.+ |+.+..|+.
T Consensus       165 ~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~  199 (230)
T TIGR01184       165 RVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI  199 (230)
T ss_pred             CCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence            789999999986 57788999999997 899988864

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.30  E-value=0.12  Score=38.41  Aligned_cols=38  Identities=11%  Similarity=0.053  Sum_probs=32.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQ   42 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~   42 (98)
                      .|-|||+++||--. ..+.+||++-|+. |++||-||..+
T Consensus       197 ~g~Tvi~nLH~vdl-A~~Y~~Riigl~~-G~ivfDg~~~e  234 (258)
T COG3638         197 DGITVIVNLHQVDL-AKKYADRIIGLKA-GRIVFDGPASE  234 (258)
T ss_pred             cCCEEEEEechHHH-HHHHHhhheEecC-CcEEEeCChhh
Confidence            47899999999765 5678999999997 99999999873

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=93.30  E-value=0.16  Score=36.17  Aligned_cols=36  Identities=11%  Similarity=0.033  Sum_probs=30.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++.|++. .+.++.|++++|.. |+.+..|+..
T Consensus       180 ~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  215 (235)
T cd03299         180 GVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKPE  215 (235)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence            789999999984 46778999999997 8999998754

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=93.27  E-value=0.15  Score=36.26  Aligned_cols=36  Identities=11%  Similarity=0.020  Sum_probs=31.3

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++-|.+. ++....|++++|.. |+.+..|+..
T Consensus       176 ~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  211 (230)
T TIGR02770       176 GTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTVK  211 (230)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            789999999988 67788999999997 8999988643

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=93.25  E-value=0.17  Score=37.49  Aligned_cols=45  Identities=11%  Similarity=0.087  Sum_probs=38.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhh
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEG   53 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~   53 (98)
                      |++|||+.-|.+. .|-+..|++++|.. |++.+.|.++    +++++++.
T Consensus       196 ~~~tiv~VSHd~~-~I~~~Cd~~i~l~~-G~i~~~G~~~----~vi~~Y~~  240 (249)
T COG1134         196 KNKTIVLVSHDLG-AIKQYCDRAIWLEH-GQIRMEGSPE----EVIPAYEE  240 (249)
T ss_pred             cCCEEEEEECCHH-HHHHhcCeeEEEeC-CEEEEcCCHH----HHHHHHHH
Confidence            6788888777664 58899999999997 9999999987    67877776

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=93.24  E-value=0.13  Score=37.12  Aligned_cols=37  Identities=11%  Similarity=0.114  Sum_probs=32.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+.+..|++++|.. |+.+..|+..
T Consensus       187 ~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  223 (255)
T PRK11231        187 QGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPE  223 (255)
T ss_pred             CCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHH
Confidence            4789999999887 77888999999997 8999998765

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=93.20  E-value=0.12  Score=36.74  Aligned_cols=36  Identities=11%  Similarity=-0.003  Sum_probs=30.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|++. .+.++.|++++|.+ |+.+..|+..
T Consensus       196 ~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~  231 (243)
T TIGR02315       196 GITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPS  231 (243)
T ss_pred             CCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHH
Confidence            689999999987 46788999999997 8999988754

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=93.16  E-value=0.15  Score=37.13  Aligned_cols=37  Identities=8%  Similarity=0.008  Sum_probs=31.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|.+. .+.++.|++++|.. |+.+..|+..
T Consensus       211 ~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  247 (267)
T PRK14237        211 KNYTIIIVTHNMQ-QAARASDYTAFFYL-GDLIEYDKTR  247 (267)
T ss_pred             cCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence            4679999999988 58889999999997 8999999754

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=93.16  E-value=0.16  Score=36.12  Aligned_cols=37  Identities=8%  Similarity=-0.012  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|.+. .+..+.|++++|.. |++++.|+..
T Consensus       185 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  221 (240)
T PRK09493        185 EGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDPQ  221 (240)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCHH
Confidence            3789999999987 46678999999997 8999998754

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=93.16  E-value=0.14  Score=37.91  Aligned_cols=36  Identities=6%  Similarity=0.092  Sum_probs=30.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. .+. ..|++++|.. |+++++|++.
T Consensus       186 ~~~tii~isH~~~-~i~-~~dri~vl~~-G~i~~~g~~~  221 (275)
T cd03289         186 ADCTVILSEHRIE-AML-ECQRFLVIEE-NKVRQYDSIQ  221 (275)
T ss_pred             CCCEEEEEECCHH-HHH-hCCEEEEecC-CeEeecCCHH
Confidence            5789999999984 444 5999999997 8999999876

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.15  E-value=0.15  Score=37.64  Aligned_cols=36  Identities=14%  Similarity=0.117  Sum_probs=31.4

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++-|.+. .+.+..|++++|.. |++++.|+..
T Consensus       201 ~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  236 (289)
T PRK13645        201 KKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIGSPF  236 (289)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            789999999987 67788999999997 8999998754

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=93.15  E-value=0.17  Score=35.92  Aligned_cols=36  Identities=8%  Similarity=-0.041  Sum_probs=30.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. .+.+..|++++|.+ |++++.|+..
T Consensus       180 ~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~  215 (232)
T PRK10771        180 QLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPTD  215 (232)
T ss_pred             CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            789999999988 56678899999997 8999998743

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=93.12  E-value=0.14  Score=36.55  Aligned_cols=33  Identities=6%  Similarity=0.083  Sum_probs=28.4

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      ++|||++-|++. .+..+.|++++|.. |++++.|
T Consensus       204 ~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g  236 (236)
T cd03267         204 GTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG  236 (236)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence            789999999986 67788999999997 8988765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=93.12  E-value=0.18  Score=35.80  Aligned_cols=36  Identities=11%  Similarity=0.024  Sum_probs=31.2

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++.|.+.. +..+.|++++|.. |+.++.|+..
T Consensus       195 ~~tii~~tH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~  230 (241)
T cd03256         195 GITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGPPA  230 (241)
T ss_pred             CCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEeecCHH
Confidence            7899999999874 6778999999997 8999998754

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.12  E-value=0.16  Score=36.78  Aligned_cols=37  Identities=8%  Similarity=-0.072  Sum_probs=31.6

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCC----CeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRG----GKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~g----G~~vy~G~~~   41 (98)
                      ++|||++.|++. .+.++.|++++|..|    |++++.|++.
T Consensus       201 ~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~  241 (261)
T PRK14258        201 ELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTK  241 (261)
T ss_pred             CCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHH
Confidence            789999999985 688899999999853    8999999764

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.12  E-value=0.15  Score=36.47  Aligned_cols=37  Identities=8%  Similarity=-0.015  Sum_probs=31.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|++. .+....|++++|.. |+++..|+..
T Consensus       193 ~~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  229 (249)
T PRK14253        193 KNYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDTQ  229 (249)
T ss_pred             cCCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            3579999999986 68888999999997 8999998743

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=93.10  E-value=0.08  Score=39.85  Aligned_cols=37  Identities=8%  Similarity=0.072  Sum_probs=32.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .|.|||.|-|+=. .+=++.|+|++|++ |+.|..|++.
T Consensus       179 ~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~  215 (300)
T COG4152         179 EGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE  215 (300)
T ss_pred             cCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence            5899999999754 46789999999997 8999999987

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.10  E-value=0.15  Score=38.51  Aligned_cols=37  Identities=16%  Similarity=0.151  Sum_probs=31.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. .+....|++++|.. |+++..|+..
T Consensus       225 ~g~TiiivtHd~~-~~~~~adri~vl~~-G~i~~~g~~~  261 (320)
T PRK13631        225 NNKTVFVITHTME-HVLEVADEVIVMDK-GKILKTGTPY  261 (320)
T ss_pred             CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            4789999999977 56678999999997 8999999754

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.06  E-value=0.17  Score=36.28  Aligned_cols=37  Identities=11%  Similarity=0.123  Sum_probs=31.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|++. .+....|++++|.+ |+.+..|+..
T Consensus       194 ~~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  230 (250)
T PRK14262        194 ENYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPTR  230 (250)
T ss_pred             cCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence            4689999999877 56788999999997 8999998753

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.05  E-value=0.17  Score=36.24  Aligned_cols=37  Identities=8%  Similarity=0.015  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|++. .+.+..|++++|.. |+.+..|+..
T Consensus       194 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  230 (250)
T PRK14247        194 KDMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPTR  230 (250)
T ss_pred             cCCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCHH
Confidence            4689999999987 57778999999997 8999998753

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.02  E-value=0.15  Score=36.53  Aligned_cols=37  Identities=14%  Similarity=0.017  Sum_probs=31.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|.+. .+....|++++|.. |+.+..|+..
T Consensus       197 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  233 (253)
T PRK14267        197 KEYTIVLVTHSPA-QAARVSDYVAFLYL-GKLIEVGPTR  233 (253)
T ss_pred             hCCEEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence            4589999999987 57788999999997 8999998754

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=93.01  E-value=0.2  Score=35.70  Aligned_cols=36  Identities=11%  Similarity=0.111  Sum_probs=30.7

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++-|++. .+....|++++|.. |+.++.|+..
T Consensus       187 ~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  222 (239)
T cd03296         187 HVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGTPD  222 (239)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence            789999999985 56778999999986 8999998753

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=92.99  E-value=0.15  Score=35.73  Aligned_cols=33  Identities=15%  Similarity=-0.079  Sum_probs=27.7

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      ++|||++.|.+. .+....|++++|.. |+.+..|
T Consensus       196 ~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g  228 (228)
T cd03257         196 GLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG  228 (228)
T ss_pred             CCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence            789999999986 56668999999997 8887654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=92.96  E-value=0.15  Score=35.60  Aligned_cols=34  Identities=12%  Similarity=0.153  Sum_probs=28.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      +++|||++.|.+. .+....|++++|.+ |+++..|
T Consensus       185 ~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~  218 (218)
T cd03266         185 LGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG  218 (218)
T ss_pred             CCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence            3789999999985 67788999999997 8887654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=92.94  E-value=0.17  Score=36.99  Aligned_cols=36  Identities=14%  Similarity=0.097  Sum_probs=31.0

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++-|.+. .+..+.|++++|.. |+.+..|+..
T Consensus       211 g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~  246 (269)
T cd03294         211 QKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTPE  246 (269)
T ss_pred             CCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence            789999999986 57788999999986 8999998743

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.94  E-value=0.15  Score=36.53  Aligned_cols=37  Identities=11%  Similarity=0.012  Sum_probs=31.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|++. .+.+..|++++|.. |+++..|+..
T Consensus       195 ~~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~  231 (251)
T PRK14270        195 KEYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKTE  231 (251)
T ss_pred             hCCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCHH
Confidence            3579999999985 67788999999986 8999999754

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=92.90  E-value=0.15  Score=40.80  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+..|+++  ..+.+|++++|.+ |+.+..|+.+
T Consensus       503 ~~~tvi~ith~~~--~~~~~d~i~~l~~-G~i~~~g~~~  538 (544)
T TIGR01842       503 RGITVVVITHRPS--LLGCVDKILVLQD-GRIARFGERD  538 (544)
T ss_pred             CCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEeeCCHH
Confidence            5799999999996  4678999999997 8999999754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.85  E-value=0.17  Score=37.24  Aligned_cols=36  Identities=11%  Similarity=0.066  Sum_probs=31.5

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++-|.+.. +....|++++|.. |+.++.|+..
T Consensus       192 g~tillvsH~~~~-~~~~~dri~~l~~-G~i~~~g~~~  227 (283)
T PRK13636        192 GLTIIIATHDIDI-VPLYCDNVFVMKE-GRVILQGNPK  227 (283)
T ss_pred             CCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence            7899999998877 5567999999997 8999999865

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.84  E-value=0.19  Score=36.03  Aligned_cols=37  Identities=5%  Similarity=-0.046  Sum_probs=31.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|.+. .+.+..|++++|.. |++++.|+..
T Consensus       196 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  232 (252)
T PRK14272        196 KVTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPTD  232 (252)
T ss_pred             cCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            4589999999887 57778999999997 8999998754

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.83  E-value=0.18  Score=37.19  Aligned_cols=37  Identities=11%  Similarity=0.103  Sum_probs=31.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|.+. .+..+.|++++|.. |+.+..|++.
T Consensus       195 ~g~tvl~vtH~~~-~~~~~~dri~~l~~-G~i~~~g~~~  231 (286)
T PRK13646        195 ENKTIILVSHDMN-EVARYADEVIVMKE-GSIVSQTSPK  231 (286)
T ss_pred             CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            3789999999987 47788999999997 8999999754

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=92.83  E-value=0.34  Score=34.48  Aligned_cols=36  Identities=6%  Similarity=0.030  Sum_probs=29.3

Q ss_pred             CceEEEEecCCcHHHHhh-ccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFN-LKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~-FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++.|.+.. +-.. .|++++|.. |+.++.|+..
T Consensus       195 ~~tiii~sH~~~~-~~~~~~d~i~~l~~-g~i~~~g~~~  231 (248)
T PRK09580        195 KRSFIIVTHYQRI-LDYIKPDYVHVLYQ-GRIVKSGDFT  231 (248)
T ss_pred             CCEEEEEeCCHHH-HHhhhCCEEEEEEC-CeEEEeCCHH
Confidence            6899999999774 3333 799999986 8999999764

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=92.82  E-value=0.17  Score=35.88  Aligned_cols=36  Identities=8%  Similarity=0.063  Sum_probs=31.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|.+. .+.+..|+++++ . |++++.|+..
T Consensus       162 ~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~  197 (223)
T TIGR03771       162 AGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQ  197 (223)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence            4789999999987 588889999999 6 8999999765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=92.74  E-value=0.17  Score=40.52  Aligned_cols=37  Identities=14%  Similarity=0.123  Sum_probs=30.9

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .|+||+++-.|.++. +-. .|++++|.+ |+++..|+.+
T Consensus       512 ~~~rT~iiIaHRlst-i~~-aD~IiVl~~-G~i~e~G~h~  548 (567)
T COG1132         512 LKGRTTLIIAHRLST-IKN-ADRIIVLDN-GRIVERGTHE  548 (567)
T ss_pred             hcCCEEEEEeccHhH-HHh-CCEEEEEEC-CEEEEecCHH
Confidence            378999999999943 333 999999997 8999999865

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=92.72  E-value=0.17  Score=36.25  Aligned_cols=36  Identities=6%  Similarity=-0.116  Sum_probs=31.0

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.+. .+.+..|++++|.. |+.++.|+.+
T Consensus       204 ~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~  239 (255)
T PRK11300        204 NVTVLLIEHDMK-LVMGISDRIYVVNQ-GTPLANGTPE  239 (255)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEecCCHH
Confidence            689999999876 67788999999997 8999999754

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=92.69  E-value=0.16  Score=35.61  Aligned_cols=37  Identities=14%  Similarity=0.017  Sum_probs=30.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|++. .+....|++++|.. |+++..|+..
T Consensus       181 ~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~  217 (220)
T cd03263         181 KGRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSPQ  217 (220)
T ss_pred             cCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCHH
Confidence            3579999999987 46678899999997 8999998753

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=92.68  E-value=0.2  Score=35.89  Aligned_cols=37  Identities=11%  Similarity=0.043  Sum_probs=31.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|.+. .+.+..|++++|.. |+++..|+..
T Consensus       194 ~~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~  230 (250)
T PRK14240        194 KDYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDTV  230 (250)
T ss_pred             cCCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence            4689999999865 67788999999997 8999998643

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=92.56  E-value=0.21  Score=35.70  Aligned_cols=36  Identities=11%  Similarity=0.103  Sum_probs=30.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++.|.+. .+....|++++|.+ |+.++.|+.+
T Consensus       186 g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  221 (242)
T cd03295         186 GKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTPD  221 (242)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence            789999999985 56778899999997 8999998754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=92.53  E-value=0.21  Score=36.02  Aligned_cols=37  Identities=8%  Similarity=-0.000  Sum_probs=30.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. .+-...|++++|.. |+.++.|+..
T Consensus       201 ~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  237 (257)
T PRK10619        201 EGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAPE  237 (257)
T ss_pred             cCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence            3789999999876 56677899999997 8999998743

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=92.52  E-value=0.2  Score=38.11  Aligned_cols=36  Identities=6%  Similarity=-0.036  Sum_probs=31.6

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|++. .+.++.|++++|.. |++++.|+..
T Consensus       191 g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g~~~  226 (343)
T PRK11153        191 GLTIVLITHEMD-VVKRICDRVAVIDA-GRLVEQGTVS  226 (343)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            789999999986 67788999999997 8999999754

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=92.51  E-value=0.19  Score=35.06  Aligned_cols=33  Identities=12%  Similarity=0.158  Sum_probs=27.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      ++|||++-|.+. .+.++.|++++|.. |+.+..|
T Consensus       181 ~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g  213 (213)
T cd03259         181 GITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG  213 (213)
T ss_pred             CCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence            789999999885 56778999999997 8888765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=92.49  E-value=0.22  Score=36.14  Aligned_cols=36  Identities=14%  Similarity=0.123  Sum_probs=31.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|++. .+.++.|++++|.. |+++..|+..
T Consensus       194 ~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  229 (265)
T PRK10253        194 GYTLAAVLHDLN-QACRYASHLIALRE-GKIVAQGAPK  229 (265)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            679999999987 68899999999996 8999999865

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=92.39  E-value=0.22  Score=36.65  Aligned_cols=36  Identities=8%  Similarity=0.074  Sum_probs=31.3

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.+. .+..+.|++++|.. |+++..|+..
T Consensus       205 ~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  240 (272)
T PRK13547        205 NLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPA  240 (272)
T ss_pred             CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence            789999999976 57788999999997 8999999764

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=92.37  E-value=0.25  Score=35.26  Aligned_cols=36  Identities=11%  Similarity=0.097  Sum_probs=31.3

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++.|++. .+.+..|++++|.. |+.+..|+.+
T Consensus       181 ~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~  216 (237)
T TIGR00968       181 HVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSPD  216 (237)
T ss_pred             CCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCHH
Confidence            789999999985 67788999999996 8999999754

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=92.29  E-value=0.21  Score=41.06  Aligned_cols=36  Identities=11%  Similarity=0.119  Sum_probs=31.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+..|+++  ....+|++++|.+ |+++..|+..
T Consensus       641 ~~~t~i~itH~~~--~~~~~d~ii~l~~-G~i~~~g~~~  676 (694)
T TIGR01846       641 RGRTVIIIAHRLS--TVRACDRIIVLEK-GQIAESGRHE  676 (694)
T ss_pred             CCCEEEEEeCChH--HHHhCCEEEEEeC-CEEEEeCCHH
Confidence            6799999999985  4567999999997 8999999854

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=92.27  E-value=0.24  Score=35.44  Aligned_cols=37  Identities=11%  Similarity=0.030  Sum_probs=31.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+.++.|++++|.. |++++.|+..
T Consensus       193 ~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  229 (250)
T PRK11264        193 EKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPAK  229 (250)
T ss_pred             cCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence            4789999999876 57788999999997 8999998643

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=92.24  E-value=0.19  Score=38.58  Aligned_cols=36  Identities=11%  Similarity=0.063  Sum_probs=32.2

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|+|.+-|.+. +++.+.|++++|.+ |+.+..|++.
T Consensus       185 ~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~~  220 (353)
T TIGR03265       185 GVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTPQ  220 (353)
T ss_pred             CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            679999999985 88999999999997 8999999865

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=92.24  E-value=0.28  Score=34.91  Aligned_cols=37  Identities=8%  Similarity=-0.042  Sum_probs=31.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. ++....|++++|.+ |++++.|+..
T Consensus       186 ~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~  222 (241)
T PRK10895        186 SGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTPT  222 (241)
T ss_pred             cCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCHH
Confidence            4789999999874 67788999999997 8999998754

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.24  E-value=0.25  Score=35.68  Aligned_cols=37  Identities=3%  Similarity=-0.011  Sum_probs=31.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|.+. .+.+..|++++|.. |+++..|+..
T Consensus       203 ~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  239 (259)
T PRK14274        203 EKYTIVIVTHNMQ-QAARVSDQTAFFYM-GELVECNDTN  239 (259)
T ss_pred             cCCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            3689999999986 67788999999986 8999999743

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=92.18  E-value=0.25  Score=34.59  Aligned_cols=34  Identities=12%  Similarity=0.084  Sum_probs=28.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE   39 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~   39 (98)
                      ++|||++-|++. .+.+..|++++|.. |+.+..|.
T Consensus       179 ~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~  212 (213)
T TIGR01277       179 QRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD  212 (213)
T ss_pred             CCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence            789999999976 56678999999986 89988874

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=92.16  E-value=0.25  Score=33.81  Aligned_cols=33  Identities=15%  Similarity=0.171  Sum_probs=27.5

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      ++|||++-|++. .+.++.|++++|.. |+.++.|
T Consensus       148 ~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~  180 (180)
T cd03214         148 GKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG  180 (180)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence            689999999987 56688999999997 8887654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=92.08  E-value=0.22  Score=35.31  Aligned_cols=36  Identities=14%  Similarity=0.107  Sum_probs=29.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+..-  ...|++++|.+ |++++.|+..
T Consensus       187 ~g~~vi~~sh~~~~~--~~~d~v~~l~~-G~i~~~~~~~  222 (238)
T cd03249         187 KGRTTIVIAHRLSTI--RNADLIAVLQN-GQVVEQGTHD  222 (238)
T ss_pred             CCCEEEEEeCCHHHH--hhCCEEEEEEC-CEEEEeCCHH
Confidence            578999999998753  37999999997 8999998743

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=92.08  E-value=0.23  Score=40.81  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=31.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+.-|+++  ....+|++++|.+ |+++..|+.+
T Consensus       649 ~~~T~iiItHrl~--~~~~~D~iivl~~-G~i~e~G~~~  684 (694)
T TIGR03375       649 AGKTLVLVTHRTS--LLDLVDRIIVMDN-GRIVADGPKD  684 (694)
T ss_pred             CCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEeeCCHH
Confidence            6799999999996  4688999999997 9999999754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=92.07  E-value=0.34  Score=35.82  Aligned_cols=36  Identities=14%  Similarity=0.084  Sum_probs=29.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFREL   40 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~   40 (98)
                      ++.|||++-|.+..  ....|+++.|.     .||++++.|++
T Consensus       221 ~g~tvIiitH~~~~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         221 KGNTVVVIEHNLDV--IKCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             CCCEEEEEeCCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence            47899999999963  46799999994     36999999863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=92.06  E-value=0.27  Score=34.71  Aligned_cols=36  Identities=8%  Similarity=-0.075  Sum_probs=31.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++-|++. .+-...|++++|.. |+.+..|+..
T Consensus       182 ~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~  217 (230)
T TIGR03410       182 GMAILLVEQYLD-FARELADRYYVMER-GRVVASGAGD  217 (230)
T ss_pred             CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            789999999976 57778999999997 8999999764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.02  E-value=0.26  Score=36.07  Aligned_cols=36  Identities=6%  Similarity=-0.026  Sum_probs=31.0

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++-|.+. .+.++.|++++|.. |+++..|+..
T Consensus       195 ~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  230 (280)
T PRK13649        195 GMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKPK  230 (280)
T ss_pred             CCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            689999999985 66778999999997 8999998754

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.96  E-value=0.25  Score=35.89  Aligned_cols=37  Identities=5%  Similarity=0.063  Sum_probs=31.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|++. .+.++.|++++|.. |++++.|+..
T Consensus       212 ~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~  248 (268)
T PRK14248        212 EEYSIIIVTHNMQ-QALRVSDRTAFFLN-GDLVEYDQTE  248 (268)
T ss_pred             cCCEEEEEEeCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            3579999999976 57788999999997 8999998743

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=91.91  E-value=0.28  Score=34.81  Aligned_cols=35  Identities=14%  Similarity=0.076  Sum_probs=30.2

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL   40 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~   40 (98)
                      ++|||++-|++. ++.+..|++++|.. |+.++.|+.
T Consensus       181 ~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~  215 (232)
T cd03300         181 GITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP  215 (232)
T ss_pred             CCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence            789999999994 46788999999997 899999864

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=91.90  E-value=0.25  Score=39.68  Aligned_cols=36  Identities=11%  Similarity=0.238  Sum_probs=31.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+.-|++  +....+|++++|.. |+++-.|+.+
T Consensus       533 ~~~TvIiItHrl--~~i~~aD~Iivl~~-G~i~e~G~~~  568 (588)
T PRK11174        533 RRQTTLMVTHQL--EDLAQWDQIWVMQD-GQIVQQGDYA  568 (588)
T ss_pred             CCCEEEEEecCh--HHHHhCCEEEEEeC-CeEeecCCHH
Confidence            789999999999  45678999999996 8999999754

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=91.82  E-value=0.28  Score=35.64  Aligned_cols=36  Identities=6%  Similarity=-0.007  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL   40 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~   40 (98)
                      ++.|+++..|||+. +-..-|+++++.+ |++++.|+.
T Consensus       179 ~~~TllmVTH~~~D-a~~ia~~~~fl~~-Gri~~~g~~  214 (231)
T COG3840         179 RKMTLLMVTHHPED-AARIADRVVFLDN-GRIAAQGST  214 (231)
T ss_pred             hCCEEEEEeCCHHH-HHHhhhceEEEeC-CEEEeeccH
Confidence            67899999999975 5667899999997 999999974

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=91.81  E-value=0.31  Score=35.00  Aligned_cols=36  Identities=6%  Similarity=-0.045  Sum_probs=30.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|++. .+..+.|++++|.. |+.+..|+..
T Consensus       197 ~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  232 (252)
T TIGR03005       197 DLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKPD  232 (252)
T ss_pred             CcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence            789999999986 57788999999997 8999988643

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.77  E-value=0.29  Score=36.15  Aligned_cols=36  Identities=11%  Similarity=-0.020  Sum_probs=31.2

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++.|... .+..+.|++++|.. |+.+..|+..
T Consensus       195 g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~~  230 (287)
T PRK13637        195 NMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTPR  230 (287)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            789999999974 56778999999997 8999999754

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=91.75  E-value=0.27  Score=37.05  Aligned_cols=36  Identities=11%  Similarity=0.092  Sum_probs=31.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.+. ++..+.|++++|.. |+++..|++.
T Consensus       151 g~tiiivTHd~~-e~~~~~d~i~vl~~-G~i~~~g~~~  186 (325)
T TIGR01187       151 GITFVFVTHDQE-EAMTMSDRIAIMRK-GKIAQIGTPE  186 (325)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            789999999985 68889999999997 8999999764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=91.75  E-value=0.3  Score=34.78  Aligned_cols=37  Identities=8%  Similarity=0.049  Sum_probs=30.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|++. .+.+..|++++|.. |+.++.|+..
T Consensus       190 ~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~~  226 (242)
T PRK11124        190 TGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDAS  226 (242)
T ss_pred             cCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence            3789999999986 55677899999997 8999998754

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=91.75  E-value=0.3  Score=39.33  Aligned_cols=36  Identities=11%  Similarity=0.174  Sum_probs=31.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||+..|+|  +....+|++++|.. |+.+..|+.+
T Consensus       524 ~~~tvIivtHr~--~~l~~~D~ii~l~~-G~i~~~G~~~  559 (592)
T PRK10790        524 EHTTLVVIAHRL--STIVEADTILVLHR-GQAVEQGTHQ  559 (592)
T ss_pred             CCCEEEEEecch--HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            578999999999  55778999999996 9999999865

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=91.68  E-value=0.31  Score=35.28  Aligned_cols=37  Identities=8%  Similarity=0.100  Sum_probs=31.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. .+..+.|++++|.+ |++++.|+..
T Consensus       190 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  226 (258)
T PRK13548        190 RGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTPA  226 (258)
T ss_pred             cCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCHH
Confidence            3789999999866 56778999999997 8999998754

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=91.66  E-value=0.25  Score=40.91  Aligned_cols=36  Identities=11%  Similarity=0.188  Sum_probs=31.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+.-|+++  ....+|++++|.+ |+++..|+..
T Consensus       663 ~~~TvIiItHrl~--~i~~aD~IivL~~-G~ive~Gt~~  698 (711)
T TIGR00958       663 ASRTVLLIAHRLS--TVERADQILVLKK-GSVVEMGTHK  698 (711)
T ss_pred             CCCeEEEEeccHH--HHHhCCEEEEEEC-CEEEEeeCHH
Confidence            6899999999985  4678999999986 8999999864

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=91.57  E-value=0.3  Score=35.55  Aligned_cols=36  Identities=6%  Similarity=0.004  Sum_probs=30.5

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. .+..+.|++++|.. |+++..|+..
T Consensus       200 g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  235 (267)
T PRK15112        200 GISYIYVTQHLG-MMKHISDQVLVMHQ-GEVVERGSTA  235 (267)
T ss_pred             CcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCHH
Confidence            789999999885 67778999999996 8999988643

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.53  E-value=0.34  Score=35.30  Aligned_cols=37  Identities=11%  Similarity=0.066  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+....|++++|.. |+.+..|+..
T Consensus       185 ~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  221 (271)
T PRK13638        185 QGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAPG  221 (271)
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            4789999999876 46688999999997 8999999754

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=91.51  E-value=0.33  Score=33.97  Aligned_cols=37  Identities=8%  Similarity=0.051  Sum_probs=30.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|.+. .+....|++++|.. |+++..|+..
T Consensus       181 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  217 (222)
T cd03224         181 EGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTAA  217 (222)
T ss_pred             CCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCHH
Confidence            4689999999875 56678999999997 8999988643

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=91.50  E-value=0.33  Score=36.11  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=32.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. ++-++.|++++|.+ |+.++.|+..
T Consensus       181 ~~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~~  217 (301)
T TIGR03522       181 KDKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKLD  217 (301)
T ss_pred             CCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            4689999999887 67788999999997 8999999865

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=91.48  E-value=0.34  Score=34.66  Aligned_cols=38  Identities=18%  Similarity=0.120  Sum_probs=29.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+..-..-..|++++|.. |+.++.|+++
T Consensus       200 ~g~tii~~tH~~~~~~~~~~d~i~~l~~-G~i~~~~~~~  237 (252)
T CHL00131        200 SENSIILITHYQRLLDYIKPDYVHVMQN-GKIIKTGDAE  237 (252)
T ss_pred             CCCEEEEEecCHHHHHhhhCCEEEEEeC-CEEEEecChh
Confidence            4789999999876532222699999986 8999999764

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.47  E-value=0.33  Score=34.86  Aligned_cols=37  Identities=5%  Similarity=-0.165  Sum_probs=30.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+..+.|++++|.. |+.+..|+..
T Consensus       198 ~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  234 (254)
T PRK14273        198 ESYTIIIVTHNMQ-QAGRISDRTAFFLN-GCIEEESSTD  234 (254)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            3579999999886 56778999999997 8999998753

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.43  E-value=0.32  Score=35.64  Aligned_cols=36  Identities=22%  Similarity=0.215  Sum_probs=30.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|++.. + ...|++++|.+ |+.++.|+..
T Consensus       185 ~g~til~~tH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~  220 (274)
T PRK13644        185 KGKTIVYITHNLEE-L-HDADRIIVMDR-GKIVLEGEPE  220 (274)
T ss_pred             CCCEEEEEecCHHH-H-hhCCEEEEEEC-CEEEEECCHH
Confidence            47899999999985 4 56999999997 8999999864

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=91.42  E-value=0.28  Score=34.11  Aligned_cols=34  Identities=6%  Similarity=0.050  Sum_probs=27.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      +++|||++-|++. .+.++.|++++|.. |+.++.|
T Consensus       177 ~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~  210 (210)
T cd03269         177 AGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG  210 (210)
T ss_pred             CCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence            4689999999886 46677899999997 8888764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=91.42  E-value=0.32  Score=35.31  Aligned_cols=36  Identities=11%  Similarity=0.034  Sum_probs=30.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. .+..+.|++++|.. |+.+..|+..
T Consensus       201 g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  236 (265)
T TIGR02769       201 GTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDVA  236 (265)
T ss_pred             CcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCHH
Confidence            789999999877 55677899999996 8999999764

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=91.42  E-value=0.32  Score=34.58  Aligned_cols=37  Identities=5%  Similarity=0.015  Sum_probs=31.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|++. .+.++.|++++|.+ |+.+..|+..
T Consensus       191 ~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~~  227 (242)
T TIGR03411       191 GKHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSLD  227 (242)
T ss_pred             cCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCHH
Confidence            3579999999877 57788999999997 8999988754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=91.37  E-value=0.32  Score=33.81  Aligned_cols=34  Identities=12%  Similarity=-0.064  Sum_probs=27.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      +++|||++-|++. .+-.+.|++++|.. |+.+..|
T Consensus       175 ~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g  208 (208)
T cd03268         175 QGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG  208 (208)
T ss_pred             CCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence            3789999999887 55667899999997 8988765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=91.32  E-value=0.31  Score=34.85  Aligned_cols=36  Identities=3%  Similarity=-0.024  Sum_probs=30.3

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+|||++-|.+. .+..+.|++++|.. |+++..|+..
T Consensus       193 ~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  228 (247)
T TIGR00972       193 KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPTE  228 (247)
T ss_pred             cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            479999999887 56778899999997 8999998753

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=91.31  E-value=0.33  Score=38.89  Aligned_cols=36  Identities=17%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||+.-|.+  +....+|++++|.+ |+++-.|+.+
T Consensus       528 ~~~tvI~VtHr~--~~~~~~D~Ii~l~~-g~i~e~g~~~  563 (582)
T PRK11176        528 KNRTSLVIAHRL--STIEKADEILVVED-GEIVERGTHA  563 (582)
T ss_pred             CCCEEEEEecch--HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            578999999999  45788999999997 8999999754

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.29  E-value=0.3  Score=35.01  Aligned_cols=37  Identities=5%  Similarity=-0.073  Sum_probs=31.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|++. .+.++.|++++|.. |+++..|+..
T Consensus       196 ~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  232 (252)
T PRK14256        196 EKYTIIIVTHNMQ-QAARVSDYTAFFYM-GDLVECGETK  232 (252)
T ss_pred             hCCcEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence            4579999999886 66788999999986 8999999753

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=91.19  E-value=0.37  Score=34.98  Aligned_cols=36  Identities=11%  Similarity=0.027  Sum_probs=30.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|++. .+....|++++|.. |+++..|+..
T Consensus       198 ~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~~~~~~  233 (265)
T PRK10575        198 GLTVIAVLHDIN-MAARYCDYLVALRG-GEMIAQGTPA  233 (265)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence            789999999876 67788999999996 8999998754

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=91.14  E-value=0.35  Score=38.92  Aligned_cols=36  Identities=14%  Similarity=0.125  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+..|+++  ....+|++++|.. |+++..|+.+
T Consensus       499 ~~~tii~itH~~~--~~~~~d~i~~l~~-G~i~~~g~~~  534 (569)
T PRK10789        499 EGRTVIISAHRLS--ALTEASEILVMQH-GHIAQRGNHD  534 (569)
T ss_pred             CCCEEEEEecchh--HHHcCCEEEEEeC-CEEEEecCHH
Confidence            6899999999995  4677999999997 8999999754

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=91.14  E-value=0.33  Score=34.42  Aligned_cols=37  Identities=8%  Similarity=0.019  Sum_probs=29.7

Q ss_pred             CCceEEEEecCCcHHHHhh-ccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFN-LKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~-FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|++.. +... .|++++|.. |+.++.|+.+
T Consensus       193 ~~~tvi~vsH~~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  230 (243)
T TIGR01978       193 PDRSFLIITHYQRL-LNYIKPDYVHVLLD-GRIVKSGDVE  230 (243)
T ss_pred             CCcEEEEEEecHHH-HHhhcCCeEEEEeC-CEEEEecCHH
Confidence            47899999999863 4444 699999996 8999999754

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=91.09  E-value=0.41  Score=34.48  Aligned_cols=37  Identities=14%  Similarity=0.093  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. ++....|++++|.. |+++..|+..
T Consensus       182 ~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  218 (248)
T PRK03695        182 QGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD  218 (248)
T ss_pred             CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            3689999999877 46778999999997 8999998754

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=91.05  E-value=0.38  Score=34.10  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=30.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+.. + ...|++++|.. |++++.|+..
T Consensus       186 ~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~~~~~  221 (237)
T cd03252         186 AGRTVIIIAHRLST-V-KNADRIIVMEK-GRIVEQGSHD  221 (237)
T ss_pred             CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEEcCHH
Confidence            47899999999975 3 46999999997 8999999753

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=91.05  E-value=0.33  Score=39.89  Aligned_cols=35  Identities=11%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|+|+.-|++  +....+|++++|.+ |+++..|+.+
T Consensus       635 ~~T~IiItHr~--~~i~~~D~Iivl~~-G~iv~~G~~~  669 (686)
T TIGR03797       635 KVTRIVIAHRL--STIRNADRIYVLDA-GRVVQQGTYD  669 (686)
T ss_pred             CCeEEEEecCh--HHHHcCCEEEEEEC-CEEEEECCHH
Confidence            47999999998  55688999999997 9999999864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=91.03  E-value=0.42  Score=34.83  Aligned_cols=36  Identities=8%  Similarity=-0.022  Sum_probs=30.6

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++.|.+. .+..+.|++++|.. |+.++.|+..
T Consensus       194 g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~  229 (269)
T PRK11831        194 GVTCVVVSHDVP-EVLSIADHAYIVAD-KKIVAHGSAQ  229 (269)
T ss_pred             CcEEEEEecCHH-HHHHhhCEEEEEEC-CEEEEeCCHH
Confidence            789999999874 56778999999986 8999999754

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=90.98  E-value=0.38  Score=34.47  Aligned_cols=37  Identities=8%  Similarity=-0.085  Sum_probs=30.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|.+. .+..+.|++++|.+ |+++..|+..
T Consensus       197 ~~~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~  233 (253)
T PRK14242        197 ARYTIIIVTHNMQ-QAARVSDVTAFFYM-GKLIEVGPTE  233 (253)
T ss_pred             cCCeEEEEEecHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            4679999999886 46678999999997 8999998643

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.96  E-value=0.41  Score=34.82  Aligned_cols=35  Identities=11%  Similarity=0.063  Sum_probs=29.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+..- .. .|++++|.. |+++..|+..
T Consensus       193 ~~tiiivtH~~~~~-~~-~d~i~~l~~-G~i~~~g~~~  227 (269)
T PRK13648        193 NITIISITHDLSEA-ME-ADHVIVMNK-GTVYKEGTPT  227 (269)
T ss_pred             CCEEEEEecCchHH-hc-CCEEEEEEC-CEEEEecCHH
Confidence            78999999998654 44 999999997 8999999865

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=90.92  E-value=0.35  Score=39.87  Aligned_cols=36  Identities=11%  Similarity=0.224  Sum_probs=30.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+.-|+++  ....+|++++|.+ |+++..|+.+
T Consensus       661 ~~~T~IiitHrl~--~i~~~D~Iivl~~-G~i~~~G~~~  696 (710)
T TIGR03796       661 RGCTCIIVAHRLS--TIRDCDEIIVLER-GKVVQRGTHE  696 (710)
T ss_pred             cCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEEecCHH
Confidence            4789999999985  4677999999997 9999999865

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=90.88  E-value=0.39  Score=33.73  Aligned_cols=36  Identities=8%  Similarity=-0.096  Sum_probs=30.3

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. .+....|++++|.. |+++..|+..
T Consensus       182 ~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  217 (220)
T cd03265         182 GMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTPE  217 (220)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCChH
Confidence            789999999877 57778999999997 8999988653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=90.88  E-value=0.42  Score=34.08  Aligned_cols=33  Identities=9%  Similarity=0.077  Sum_probs=27.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEee------cCCCeEEEec
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLM------KRGGKIIYFR   38 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL------~~gG~~vy~G   38 (98)
                      ++.|||++-|.+..  ....|++++|      .. |++|+.|
T Consensus       188 ~g~tii~itH~~~~--~~~~d~i~~l~~~~~~~~-G~iv~~g  226 (226)
T cd03270         188 LGNTVLVVEHDEDT--IRAADHVIDIGPGAGVHG-GEIVAQG  226 (226)
T ss_pred             CCCEEEEEEeCHHH--HHhCCEEEEeCCCccccC-CEEEecC
Confidence            47899999999863  4689999999      64 8888876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=90.84  E-value=0.4  Score=34.65  Aligned_cols=37  Identities=11%  Similarity=0.036  Sum_probs=30.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|++. .+..+.|++++|.. |+++..|+..
T Consensus       204 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  240 (260)
T PRK10744        204 QDYTVVIVTHNMQ-QAARCSDYTAFMYL-GELIEFGNTD  240 (260)
T ss_pred             cCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            4679999999986 56788999999997 8999998743

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=90.81  E-value=0.42  Score=34.56  Aligned_cols=36  Identities=11%  Similarity=0.131  Sum_probs=30.6

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.+.. +....|++++|.. |++++.|+..
T Consensus       203 g~tvii~tH~~~~-~~~~~d~i~~l~~-g~i~~~g~~~  238 (262)
T PRK09984        203 GITVVVTLHQVDY-ALRYCERIVALRQ-GHVFYDGSSQ  238 (262)
T ss_pred             CCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence            7899999999864 5667899999997 8999999764

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.68  E-value=0.43  Score=34.67  Aligned_cols=37  Identities=3%  Similarity=0.006  Sum_probs=31.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|++. .+-.+.|++++|.. |+++..|+..
T Consensus       201 ~~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~~  237 (257)
T PRK14246        201 NEIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSSN  237 (257)
T ss_pred             cCcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            3579999999975 67788999999996 8999998743

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=90.58  E-value=0.44  Score=38.47  Aligned_cols=36  Identities=17%  Similarity=0.150  Sum_probs=31.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+.-|+++.  ...+|++++|.+ |+.+..|+.+
T Consensus       523 ~~~tviiitHr~~~--~~~~d~i~~l~~-G~i~~~g~~~  558 (574)
T PRK11160        523 QNKTVLMITHRLTG--LEQFDRICVMDN-GQIIEQGTHQ  558 (574)
T ss_pred             CCCEEEEEecChhH--HHhCCEEEEEeC-CeEEEeCCHH
Confidence            68999999999965  467999999997 8999999754

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=90.51  E-value=0.5  Score=34.47  Aligned_cols=36  Identities=14%  Similarity=0.061  Sum_probs=30.7

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. .+....|++++|.. |++++.|+..
T Consensus       184 ~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~  219 (257)
T PRK11247        184 GFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTVD  219 (257)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecccc
Confidence            689999999988 46778999999997 8999988754

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=90.49  E-value=0.43  Score=34.76  Aligned_cols=37  Identities=5%  Similarity=0.007  Sum_probs=30.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|++. .+-...|++++|.. |+++..|+..
T Consensus       211 ~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~  247 (267)
T PRK14235        211 QNYTIVIVTHSMQ-QAARVSQRTAFFHL-GNLVEVGDTE  247 (267)
T ss_pred             cCCeEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence            3579999999876 56678899999997 8999998643

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=90.49  E-value=0.46  Score=33.35  Aligned_cols=36  Identities=11%  Similarity=0.175  Sum_probs=29.6

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecC-CCeEEEecCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKR-GGKIIYFREL   40 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~-gG~~vy~G~~   40 (98)
                      ++|||++-|++. .+....|++++|.+ +|+++..+++
T Consensus       182 ~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         182 GKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence            789999999986 56678999999983 3899887764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=90.46  E-value=0.39  Score=35.96  Aligned_cols=37  Identities=19%  Similarity=0.071  Sum_probs=31.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+.|||++-|... .+.+..|++++|.. |++++.|++.
T Consensus       214 ~g~tiiivtHd~~-~~~~~adrv~vl~~-G~i~~~g~~~  250 (305)
T PRK13651        214 QGKTIILVTHDLD-NVLEWTKRTIFFKD-GKIIKDGDTY  250 (305)
T ss_pred             CCCEEEEEeeCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            3789999989876 56688999999987 8999999865

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=90.45  E-value=0.42  Score=35.05  Aligned_cols=37  Identities=11%  Similarity=0.076  Sum_probs=30.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .++|||++-|++. .+.+..|++++|.. |+++..|+..
T Consensus       192 ~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~  228 (264)
T PRK13546        192 QNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELD  228 (264)
T ss_pred             CCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHH
Confidence            4789999999855 56677899999986 8999998754

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=90.32  E-value=0.48  Score=33.93  Aligned_cols=36  Identities=8%  Similarity=0.081  Sum_probs=30.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. .+....|++++|.. |+.+..|+.+
T Consensus       199 ~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~~  234 (253)
T TIGR02323       199 GLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLTD  234 (253)
T ss_pred             CCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCHH
Confidence            789999999875 66678899999997 8999998743

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=90.23  E-value=0.5  Score=36.27  Aligned_cols=36  Identities=8%  Similarity=-0.005  Sum_probs=31.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|+|.+.|.+ .++..+.|++++|.+ |+++..|++.
T Consensus       185 g~tii~vTHd~-~ea~~l~D~i~vl~~-G~i~~~g~~~  220 (356)
T PRK11650        185 KTTSLYVTHDQ-VEAMTLADRVVVMNG-GVAEQIGTPV  220 (356)
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEeC-CEEEEECCHH
Confidence            68999999988 568999999999997 9999999865

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.21  E-value=0.48  Score=33.86  Aligned_cols=36  Identities=6%  Similarity=-0.080  Sum_probs=30.7

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++-|.+. .+.+..|++++|.. |+.+..|++.
T Consensus       182 g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  217 (241)
T PRK14250        182 NLTVIWITHNME-QAKRIGDYTAFLNK-GILVEYAKTY  217 (241)
T ss_pred             CCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCHH
Confidence            789999999877 46778999999997 8999998754

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.17  E-value=0.49  Score=34.16  Aligned_cols=37  Identities=11%  Similarity=-0.013  Sum_probs=30.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|++. .+.+..|++++|.. |+.++.|+..
T Consensus       202 ~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  238 (258)
T PRK14268        202 KDYTIVIVTHNMQ-QAARISDYTGFFLM-GELIEFGQTR  238 (258)
T ss_pred             hCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            4689999999876 45577899999986 8999998753

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=90.15  E-value=0.57  Score=32.94  Aligned_cols=35  Identities=26%  Similarity=0.185  Sum_probs=29.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL   40 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~   40 (98)
                      +++|||++.|.+.. + ...|++++|.. |+.++.|+.
T Consensus       187 ~~~tii~~sh~~~~-~-~~~d~i~~l~~-g~~~~~~~~  221 (229)
T cd03254         187 KGRTSIIIAHRLST-I-KNADKILVLDD-GKIIEEGTH  221 (229)
T ss_pred             CCCEEEEEecCHHH-H-hhCCEEEEEeC-CeEEEeCCH
Confidence            57899999999865 3 45999999997 899988763

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.06  E-value=0.55  Score=34.35  Aligned_cols=36  Identities=14%  Similarity=-0.053  Sum_probs=30.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.+. .+..+.|++++|.. |+.+..|+..
T Consensus       187 ~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  222 (275)
T PRK13639        187 GITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTPK  222 (275)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            789999999866 56678999999997 8999999765

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=90.05  E-value=0.54  Score=35.66  Aligned_cols=36  Identities=8%  Similarity=0.041  Sum_probs=31.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||+..|... .+..+.|++++|.. |+++..|+..
T Consensus       212 g~til~iTHdl~-~~~~~~Dri~vm~~-G~ive~g~~~  247 (330)
T PRK09473        212 NTAIIMITHDLG-VVAGICDKVLVMYA-GRTMEYGNAR  247 (330)
T ss_pred             CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            789999999987 56678999999997 8999999854

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.04  E-value=0.57  Score=34.32  Aligned_cols=36  Identities=6%  Similarity=0.035  Sum_probs=30.7

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. .+.+..|++++|.. |+.++.|+++
T Consensus       188 g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  223 (274)
T PRK13647        188 GKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEGDKS  223 (274)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            689999999966 46678999999997 8999999854

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=89.97  E-value=0.45  Score=36.32  Aligned_cols=36  Identities=8%  Similarity=0.004  Sum_probs=31.4

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.+. ++..+.|++++|.. |+++..|+..
T Consensus       182 g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  217 (354)
T TIGR02142       182 GIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIA  217 (354)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence            689999999986 67888999999997 8999999754

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.91  E-value=0.55  Score=34.16  Aligned_cols=38  Identities=8%  Similarity=0.071  Sum_probs=30.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeec-------CCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMK-------RGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-------~gG~~vy~G~~~   41 (98)
                      +++|||++.|++. .+.++.|++++|.       .+|+++..|+..
T Consensus       197 ~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~  241 (261)
T PRK14263        197 KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTA  241 (261)
T ss_pred             cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHH
Confidence            4679999999877 4678899999996       248999999753

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=89.89  E-value=0.54  Score=33.86  Aligned_cols=36  Identities=11%  Similarity=0.070  Sum_probs=30.3

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+.. +....|++++|.. |+++..|+.+
T Consensus       191 g~til~~sH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~  226 (254)
T PRK10418        191 ALGMLLVTHDMGV-VARLADDVAVMSH-GRIVEQGDVE  226 (254)
T ss_pred             CcEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEecCHH
Confidence            7899999998776 5567899999986 8999998754

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=89.87  E-value=0.49  Score=33.57  Aligned_cols=34  Identities=15%  Similarity=0.108  Sum_probs=27.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      ++.|||++.|++. ++....|++++|.. |+++..|
T Consensus       191 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g  224 (224)
T cd03220         191 QGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG  224 (224)
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence            4689999999975 45667899999986 8988765

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=89.87  E-value=0.5  Score=36.36  Aligned_cols=36  Identities=3%  Similarity=0.033  Sum_probs=31.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||.+-|.+. ++..+.|++++|.+ |+++..|++.
T Consensus       184 g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~~  219 (369)
T PRK11000        184 GRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL  219 (369)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            789999999986 78889999999997 8999999764

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=89.84  E-value=0.53  Score=38.82  Aligned_cols=36  Identities=14%  Similarity=0.100  Sum_probs=31.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+.-|.++  ....+|++++|.+ |+.+..|+..
T Consensus       658 ~~~T~IiitHr~~--~~~~~D~i~~l~~-G~i~~~G~~~  693 (708)
T TIGR01193       658 QDKTIIFVAHRLS--VAKQSDKIIVLDH-GKIIEQGSHD  693 (708)
T ss_pred             cCCEEEEEecchH--HHHcCCEEEEEEC-CEEEEECCHH
Confidence            5799999999996  5678999999997 8999999854

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=89.83  E-value=0.56  Score=34.57  Aligned_cols=37  Identities=11%  Similarity=0.122  Sum_probs=30.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+.+..|++++|.+ |+++..|+..
T Consensus       194 ~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~  230 (287)
T PRK13641        194 AGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASPK  230 (287)
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            4789999888765 56778999999997 8999999754

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.81  E-value=0.55  Score=34.50  Aligned_cols=36  Identities=6%  Similarity=-0.099  Sum_probs=30.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ..|||++.|.+. .+.++.|++++|.. |+++..|+..
T Consensus       212 ~~tiiivsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~  247 (276)
T PRK14271        212 RLTVIIVTHNLA-QAARISDRAALFFD-GRLVEEGPTE  247 (276)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            479999999886 67788999999997 8999998754

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=89.72  E-value=0.5  Score=34.47  Aligned_cols=37  Identities=8%  Similarity=0.027  Sum_probs=30.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|++. .+.+..|++++|.. |+.+..|+..
T Consensus       216 ~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  252 (272)
T PRK14236        216 SKYTIVIVTHNMQ-QAARVSDYTAFMYM-GKLVEYGDTD  252 (272)
T ss_pred             hCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEecCCHH
Confidence            3579999999875 46678999999997 8999998743

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=89.53  E-value=0.62  Score=37.73  Aligned_cols=36  Identities=17%  Similarity=0.212  Sum_probs=30.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||+.-|+++.  ...+|++++|.. |+++..|+.+
T Consensus       519 ~~~tvI~isH~~~~--~~~~d~i~~l~~-G~i~~~g~~~  554 (585)
T TIGR01192       519 KNRTTFIIAHRLST--VRNADLVLFLDQ-GRLIEKGSFQ  554 (585)
T ss_pred             CCCEEEEEEcChHH--HHcCCEEEEEEC-CEEEEECCHH
Confidence            58999999999944  477999999997 8999999754

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.50  E-value=0.74  Score=32.94  Aligned_cols=37  Identities=11%  Similarity=0.013  Sum_probs=30.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|++. .+....|++++|.. |+.+..|+..
T Consensus       190 ~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  226 (246)
T PRK14269        190 HNLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGESK  226 (246)
T ss_pred             CCCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCHH
Confidence            4789999999875 35677899999997 8999998743

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.46  E-value=0.49  Score=34.52  Aligned_cols=38  Identities=11%  Similarity=0.028  Sum_probs=30.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecC----------CCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKR----------GGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~----------gG~~vy~G~~~   41 (98)
                      +++|||++-|++. .+..+.|++++|..          +|+++..|+++
T Consensus       202 ~~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~  249 (269)
T PRK14259        202 KNFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETK  249 (269)
T ss_pred             cCCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHH
Confidence            4679999999875 67788999999985          26789998754

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.43  E-value=0.53  Score=33.76  Aligned_cols=37  Identities=16%  Similarity=0.009  Sum_probs=30.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|++.. +.+..|++++|.+ |+.+..|+..
T Consensus       197 ~~~tvii~sh~~~~-~~~~~d~v~~l~~-G~i~~~g~~~  233 (253)
T PRK14261        197 KEYTVIIVTHNMQQ-AARVSDYTGFMYL-GKLIEFDKTT  233 (253)
T ss_pred             hCceEEEEEcCHHH-HHhhCCEEEEEEC-CEEEEcCCHH
Confidence            35799999998766 6678899999997 8999998743

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.29  E-value=0.62  Score=33.31  Aligned_cols=37  Identities=5%  Similarity=-0.100  Sum_probs=30.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|++. .+.+..|++++|.. |+++..|+..
T Consensus       195 ~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  231 (251)
T PRK14251        195 HQYTFIMVTHNLQ-QAGRISDQTAFLMN-GDLIEAGPTE  231 (251)
T ss_pred             cCCeEEEEECCHH-HHHhhcCEEEEEEC-CEEEEeCCHH
Confidence            3579999999887 46677899999997 8999998743

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=89.24  E-value=0.79  Score=31.83  Aligned_cols=26  Identities=12%  Similarity=-0.094  Sum_probs=21.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKR   30 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~   30 (98)
                      +++|||++-|.+..  .+..|++++|.+
T Consensus       138 ~g~tvIivSH~~~~--~~~~d~i~~l~~  163 (176)
T cd03238         138 LGNTVILIEHNLDV--LSSADWIIDFGP  163 (176)
T ss_pred             CCCEEEEEeCCHHH--HHhCCEEEEECC
Confidence            47899999999864  467999999965

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00243 ABC transporter; Provisional

Probab=89.19  E-value=0.52  Score=42.68  Aligned_cols=37  Identities=11%  Similarity=0.141  Sum_probs=32.2

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+++|||+.-|.+  +....+|+|++|.. |+++-+|++.
T Consensus      1493 ~~~~TvI~IAHRl--~ti~~~DrIlVLd~-G~VvE~Gt~~ 1529 (1560)
T PTZ00243       1493 FSAYTVITIAHRL--HTVAQYDKIIVMDH-GAVAEMGSPR 1529 (1560)
T ss_pred             CCCCEEEEEeccH--HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            4789999999988  45677999999997 9999999875

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.17  E-value=0.7  Score=33.86  Aligned_cols=38  Identities=11%  Similarity=0.045  Sum_probs=30.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeec--------CCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMK--------RGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~--------~gG~~vy~G~~~   41 (98)
                      ++.|||++.|++. .+..+.|++++|.        ..|+++..|+..
T Consensus       209 ~~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~  254 (274)
T PRK14265        209 EQYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTE  254 (274)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHH
Confidence            4579999999885 4567889999997        148999999864

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=89.17  E-value=0.64  Score=33.94  Aligned_cols=37  Identities=5%  Similarity=-0.020  Sum_probs=30.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. .+.+..|++++|.. |+.+..|+..
T Consensus       215 ~~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~  251 (271)
T PRK14238        215 KDYSIIIVTHNMQ-QAARISDKTAFFLN-GYVNEYDDTD  251 (271)
T ss_pred             cCCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            3689999999876 46678899999997 8999998743

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.16  E-value=0.65  Score=34.26  Aligned_cols=37  Identities=5%  Similarity=-0.076  Sum_probs=30.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|++.. +.+..|++++|.. |+++..|+..
T Consensus       230 ~~~tvIivsH~~~~-~~~~~d~i~~L~~-G~i~~~g~~~  266 (286)
T PRK14275        230 GSYTIMIVTHNMQQ-ASRVSDYTMFFYE-GVLVEHAPTA  266 (286)
T ss_pred             cCCeEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence            35799999998874 6678999999997 8999999754

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=89.10  E-value=0.67  Score=34.04  Aligned_cols=35  Identities=11%  Similarity=-0.005  Sum_probs=30.0

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.+.. + ...|++++|.. |+.+..|+..
T Consensus       191 g~tilivtH~~~~-~-~~~dri~~l~~-G~i~~~g~~~  225 (279)
T PRK13650        191 QMTVISITHDLDE-V-ALSDRVLVMKN-GQVESTSTPR  225 (279)
T ss_pred             CCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEECCHH
Confidence            7899999999875 4 57999999986 8999999754

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=89.07  E-value=0.6  Score=32.59  Aligned_cols=33  Identities=12%  Similarity=0.152  Sum_probs=27.5

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      +.|||++-|++.. +....|++++|.. |+.+..|
T Consensus       182 ~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g  214 (214)
T cd03297         182 NIPVIFVTHDLSE-AEYLADRIVVMED-GRLQYIG  214 (214)
T ss_pred             CcEEEEEecCHHH-HHHhcCEEEEEEC-CEEEecC
Confidence            7899999999864 5677899999997 8988765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=89.03  E-value=0.67  Score=34.02  Aligned_cols=35  Identities=11%  Similarity=0.033  Sum_probs=30.2

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+... -. .|++++|.. |+.+..|+..
T Consensus       195 g~tillvtH~~~~~-~~-~d~v~~l~~-G~i~~~g~~~  229 (280)
T PRK13633        195 GITIILITHYMEEA-VE-ADRIIVMDS-GKVVMEGTPK  229 (280)
T ss_pred             CCEEEEEecChHHH-hc-CCEEEEEEC-CEEEEecCHH
Confidence            78999999999964 34 999999997 8999999765

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.01  E-value=0.69  Score=33.11  Aligned_cols=36  Identities=11%  Similarity=0.024  Sum_probs=30.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|++. .+.+..|++++|.. |+++..|+..
T Consensus       197 ~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~  232 (252)
T PRK14255        197 QYTIILVTHSMH-QASRISDKTAFFLT-GNLIEFADTK  232 (252)
T ss_pred             CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            468999999875 57788999999996 8999998643

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=88.97  E-value=0.81  Score=35.04  Aligned_cols=36  Identities=8%  Similarity=-0.105  Sum_probs=30.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|+. ..+.+..|++++|.. |+++..|+..
T Consensus       191 g~tiiliTH~~-~~v~~~~d~v~vl~~-G~iv~~g~~~  226 (343)
T TIGR02314       191 GLTILLITHEM-DVVKRICDCVAVISN-GELIEQGTVS  226 (343)
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            78999999986 456688999999997 8999999754

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=88.94  E-value=0.62  Score=36.50  Aligned_cols=37  Identities=8%  Similarity=0.066  Sum_probs=31.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .++|||++.|.+. ++..+.|++++|.. |+.+..|+..
T Consensus       214 ~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~  250 (400)
T PRK10070        214 HQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD  250 (400)
T ss_pred             CCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence            3789999999876 57888999999997 8999998754

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=88.86  E-value=0.62  Score=33.97  Aligned_cols=36  Identities=17%  Similarity=0.138  Sum_probs=30.7

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. .+-.+.|++++|.. |+.+..|+..
T Consensus       202 ~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~  237 (268)
T PRK10419        202 GTACLFITHDLR-LVERFCQRVMVMDN-GQIVETQPVG  237 (268)
T ss_pred             CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEeeeCChh
Confidence            689999999876 56667899999986 8999999865

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=88.84  E-value=0.74  Score=32.48  Aligned_cols=35  Identities=20%  Similarity=0.187  Sum_probs=29.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL   40 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~   40 (98)
                      +++|||++.|++.. +- ..|++++|.. |+.+..|+.
T Consensus       186 ~~~tii~~sh~~~~-~~-~~d~v~~l~~-G~i~~~~~~  220 (234)
T cd03251         186 KNRTTFVIAHRLST-IE-NADRIVVLED-GKIVERGTH  220 (234)
T ss_pred             CCCEEEEEecCHHH-Hh-hCCEEEEecC-CeEeeeCCH
Confidence            57899999999965 33 4999999997 899988864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=88.83  E-value=0.73  Score=33.90  Aligned_cols=35  Identities=9%  Similarity=0.031  Sum_probs=30.3

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+...  ...|++++|.. |+.+..|+..
T Consensus       194 g~tvli~tH~~~~~--~~~d~i~~l~~-G~i~~~g~~~  228 (282)
T PRK13640        194 NLTVISITHDIDEA--NMADQVLVLDD-GKLLAQGSPV  228 (282)
T ss_pred             CCEEEEEecCHHHH--HhCCEEEEEEC-CEEEEeCCHH
Confidence            78999999999864  46999999997 8999999864

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=88.77  E-value=0.71  Score=32.10  Aligned_cols=33  Identities=6%  Similarity=0.028  Sum_probs=26.3

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      +.|||++-|.+. .+-+..|++++|.+ |+++..|
T Consensus       179 ~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~  211 (211)
T cd03298         179 KMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG  211 (211)
T ss_pred             CCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence            789999988774 45567899999997 8887654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03232 ABC transporter C family member; Provisional

Probab=88.73  E-value=0.61  Score=41.99  Aligned_cols=37  Identities=8%  Similarity=0.257  Sum_probs=31.7

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+++|||+.-|..+.  ...+|+|++|.+ |+++-+|+++
T Consensus      1418 ~~~~TvI~IAHRl~t--i~~~DrIlVL~~-G~ivE~Gt~~ 1454 (1495)
T PLN03232       1418 FKSCTMLVIAHRLNT--IIDCDKILVLSS-GQVLEYDSPQ 1454 (1495)
T ss_pred             cCCCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence            378999999999844  456999999997 9999999876

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=88.70  E-value=0.72  Score=33.92  Aligned_cols=35  Identities=11%  Similarity=0.070  Sum_probs=29.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|++.. +. ..|++++|.. |+.++.|+..
T Consensus       191 ~~tilivsH~~~~-~~-~~d~i~~l~~-G~i~~~g~~~  225 (279)
T PRK13635        191 GITVLSITHDLDE-AA-QADRVIVMNK-GEILEEGTPE  225 (279)
T ss_pred             CCEEEEEecCHHH-HH-cCCEEEEEEC-CEEEEECCHH
Confidence            7899999999875 33 5999999997 8999999854

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=88.69  E-value=0.7  Score=36.94  Aligned_cols=36  Identities=14%  Similarity=0.244  Sum_probs=31.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+.-|.+  +....+|++++|.. |+.+-.|+..
T Consensus       524 ~~~t~IiitH~~--~~~~~~d~vi~l~~-g~~~~~g~~~  559 (576)
T TIGR02204       524 KGRTTLIIAHRL--ATVLKADRIVVMDQ-GRIVAQGTHA  559 (576)
T ss_pred             CCCEEEEEecch--HHHHhCCEEEEEEC-CEEEeeecHH
Confidence            679999999998  45688999999997 8999998754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=88.68  E-value=0.68  Score=36.74  Aligned_cols=38  Identities=11%  Similarity=-0.010  Sum_probs=31.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQ   42 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~   42 (98)
                      ++.|||++-|.+. .+....|++++|.. |++++.|+..+
T Consensus       192 ~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~  229 (506)
T PRK13549        192 HGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTRPAAG  229 (506)
T ss_pred             CCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeeccccc
Confidence            4789999999875 55677899999997 89999998763

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=88.57  E-value=0.72  Score=35.20  Aligned_cols=36  Identities=17%  Similarity=0.112  Sum_probs=31.7

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. ++..+.|++++|.+ |+.+..|++.
T Consensus       179 g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~  214 (352)
T PRK11144        179 NIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE  214 (352)
T ss_pred             CCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence            689999999985 78899999999997 8999999764

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=88.56  E-value=0.76  Score=37.05  Aligned_cols=36  Identities=14%  Similarity=0.229  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||+.-|.++  ....+|++++|.. |+.+..|+.+
T Consensus       519 ~~~tvIiitHr~~--~~~~~D~ii~l~~-G~i~~~g~~~  554 (588)
T PRK13657        519 KGRTTFIIAHRLS--TVRNADRILVFDN-GRVVESGSFD  554 (588)
T ss_pred             cCCEEEEEEecHH--HHHhCCEEEEEEC-CEEEEeCCHH
Confidence            6799999999985  5788999999986 8999998754

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=88.51  E-value=0.9  Score=35.62  Aligned_cols=37  Identities=8%  Similarity=0.065  Sum_probs=31.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|.+. .+.++.|++++|.. |+.+..|+++
T Consensus       188 ~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G~~~  224 (402)
T PRK09536        188 DGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAGPPA  224 (402)
T ss_pred             cCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence            4789999999864 56678999999997 8999999865

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=88.41  E-value=0.79  Score=31.19  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=26.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      ++.|||++-|.+.. + ...|++++|.. |+.++.|
T Consensus       146 ~~~tii~~sh~~~~-~-~~~d~~~~l~~-g~i~~~~  178 (178)
T cd03247         146 KDKTLIWITHHLTG-I-EHMDKILFLEN-GKIIMQG  178 (178)
T ss_pred             CCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEecC
Confidence            46899999999875 3 46899999996 8988654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=88.38  E-value=0.53  Score=32.67  Aligned_cols=31  Identities=13%  Similarity=0.140  Sum_probs=25.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEE
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKII   35 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v   35 (98)
                      +++|||++-|.+.. +..+.|++++|.. |++|
T Consensus       175 ~~~tii~~sH~~~~-~~~~~d~i~~l~~-G~iv  205 (205)
T cd03226         175 QGKAVIVITHDYEF-LAKVCDRVLLLAN-GAIV  205 (205)
T ss_pred             CCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEC
Confidence            47899999999874 6678999999987 7764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=88.28  E-value=0.82  Score=32.39  Aligned_cols=35  Identities=9%  Similarity=0.058  Sum_probs=28.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL   40 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~   40 (98)
                      ++.|||++-|++.. + ..+|++++|.. |+++..|+.
T Consensus       195 ~g~tvii~sH~~~~-~-~~~~~~~~l~~-G~i~~~~~~  229 (233)
T PRK11629        195 QGTAFLVVTHDLQL-A-KRMSRQLEMRD-GRLTAELSL  229 (233)
T ss_pred             CCCEEEEEeCCHHH-H-HhhCEEEEEEC-CEEEEEecc
Confidence            47899999999865 3 34689999986 899988864

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=88.22  E-value=0.8  Score=37.54  Aligned_cols=37  Identities=11%  Similarity=0.041  Sum_probs=31.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .++|||++-|.+. .+..+.|++++|.. |+++..|+..
T Consensus       192 ~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~  228 (549)
T PRK13545        192 QGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK  228 (549)
T ss_pred             CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            4789999999975 67788999999997 8999999765

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=88.22  E-value=0.78  Score=32.04  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=26.5

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      ..|||++-|.+.. + +..|++++|.. |++++.|
T Consensus       189 ~~tii~~sH~~~~-~-~~~d~v~~l~~-g~i~~~~  220 (220)
T cd03245         189 DKTLIIITHRPSL-L-DLVDRIIVMDS-GRIVADG  220 (220)
T ss_pred             CCEEEEEeCCHHH-H-HhCCEEEEEeC-CeEeecC
Confidence            3799999999973 4 78999999997 8887754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=88.08  E-value=0.83  Score=32.91  Aligned_cols=38  Identities=3%  Similarity=0.011  Sum_probs=30.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecC-----CCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKR-----GGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~-----gG~~vy~G~~~   41 (98)
                      +++|||++.|++. .+.++.|+++++..     .|++++.|+..
T Consensus       196 ~~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~  238 (258)
T PRK14241        196 QDYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTE  238 (258)
T ss_pred             cCCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHH
Confidence            4579999999876 46778899999972     38999999753

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=88.08  E-value=1  Score=32.60  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=30.6

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecC-CCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKR-GGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~-gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. .+..+.|++++|.+ +|+++..++..
T Consensus       179 g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~  216 (255)
T PRK11248        179 GKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN  216 (255)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence            789999999886 67788999999984 48999887653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=87.99  E-value=0.98  Score=32.61  Aligned_cols=38  Identities=5%  Similarity=-0.071  Sum_probs=30.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecC----CCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKR----GGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~----gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. .+.+..|++++|..    +|+.+..|++.
T Consensus       198 ~~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~  239 (259)
T PRK14260        198 SELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTT  239 (259)
T ss_pred             cCCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHH
Confidence            3579999999876 66788999999973    38999999754

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=87.98  E-value=0.7  Score=35.82  Aligned_cols=37  Identities=14%  Similarity=0.156  Sum_probs=32.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+.|+|.+-|.+. +++.+-|++++|.. |+++..|++.
T Consensus       199 ~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~~  235 (377)
T PRK11607        199 VGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGEPE  235 (377)
T ss_pred             cCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcCHH
Confidence            3689999999876 78899999999997 8999999864

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=87.96  E-value=0.79  Score=35.15  Aligned_cols=36  Identities=11%  Similarity=0.015  Sum_probs=30.7

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|+|+..|-+ .++..+.|++++|.. |+++..|++.
T Consensus       187 g~tii~vTHd~-~ea~~~~Dri~vl~~-G~i~~~g~~~  222 (353)
T PRK10851        187 KFTSVFVTHDQ-EEAMEVADRVVVMSQ-GNIEQAGTPD  222 (353)
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            67888888876 667888999999997 8999999764

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=87.88  E-value=0.93  Score=32.92  Aligned_cols=37  Identities=5%  Similarity=-0.024  Sum_probs=30.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeec---------CCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMK---------RGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~---------~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. .+.+..|++++|.         + |+++..|+..
T Consensus       199 ~~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~-g~i~~~~~~~  244 (264)
T PRK14243        199 EQYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRY-GYLVEFDRTE  244 (264)
T ss_pred             cCCEEEEEecCHH-HHHHhCCEEEEEecccccccccC-ceEEEeCCHH
Confidence            3578999888765 6788899999998         5 8999999643

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=87.88  E-value=0.85  Score=35.55  Aligned_cols=36  Identities=14%  Similarity=0.076  Sum_probs=31.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++.|.+. ++..+.|++++|.. |+.+..|+..
T Consensus       215 ~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~  250 (382)
T TIGR03415       215 NKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE  250 (382)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence            789999999977 57889999999997 8999999865

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=87.87  E-value=0.79  Score=41.38  Aligned_cols=37  Identities=11%  Similarity=0.264  Sum_probs=31.7

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+++|||+.-|.++.  ...+|+|++|.+ |+++-+|++.
T Consensus      1468 ~~~~TvI~IAHRl~t--i~~~DrIlVld~-G~IvE~G~~~ 1504 (1522)
T TIGR00957      1468 FEDCTVLTIAHRLNT--IMDYTRVIVLDK-GEVAEFGAPS 1504 (1522)
T ss_pred             cCCCEEEEEecCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence            378999999998854  556999999997 9999999875

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03130 ABC transporter C family member; Provisional

Probab=87.77  E-value=0.83  Score=41.59  Aligned_cols=37  Identities=11%  Similarity=0.117  Sum_probs=32.3

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+++|+|+..|+++  ....+|+|++|.. |+++..|+.+
T Consensus       788 l~~kTvIlVTH~l~--~l~~aD~Ii~L~~-G~i~e~Gt~~  824 (1622)
T PLN03130        788 LRGKTRVLVTNQLH--FLSQVDRIILVHE-GMIKEEGTYE  824 (1622)
T ss_pred             hcCCEEEEEECCHh--HHHhCCEEEEEeC-CEEEEeCCHH
Confidence            37899999999984  5788999999996 9999999765

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=87.66  E-value=1  Score=32.50  Aligned_cols=36  Identities=14%  Similarity=0.058  Sum_probs=30.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|++..-. . .|++++|.. |+++..|+..
T Consensus       204 ~~~tiii~sh~~~~~~-~-~dri~~l~~-G~i~~~g~~~  239 (257)
T cd03288         204 ADRTVVTIAHRVSTIL-D-ADLVLVLSR-GILVECDTPE  239 (257)
T ss_pred             CCCEEEEEecChHHHH-h-CCEEEEEEC-CEEEEeCCHH
Confidence            4789999999998643 3 899999997 8999998754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=87.56  E-value=0.98  Score=32.26  Aligned_cols=37  Identities=11%  Similarity=-0.073  Sum_probs=30.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|++. .+....|+++++.. |+.++.|+..
T Consensus       194 ~~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~~  230 (250)
T PRK14266        194 EDYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLTD  230 (250)
T ss_pred             cCCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCHH
Confidence            4689999999875 45667899999987 8999998753

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=87.53  E-value=0.82  Score=35.34  Aligned_cols=36  Identities=14%  Similarity=0.082  Sum_probs=31.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++.|.... +..+.|++++|.. |+++..|+++
T Consensus       180 ~~Tii~vTHd~~e-a~~~~drI~vl~~-G~iv~~g~~~  215 (363)
T TIGR01186       180 QKTIVFITHDLDE-AIRIGDRIVIMKA-GEIVQVGTPD  215 (363)
T ss_pred             CCEEEEEeCCHHH-HHHhCCEEEEEeC-CEEEeeCCHH
Confidence            7899999998765 6778999999986 8999999755

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=87.49  E-value=0.92  Score=31.54  Aligned_cols=34  Identities=6%  Similarity=0.011  Sum_probs=27.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      ++.|||++-|.+.. +.++.|++++|.. |+++..|
T Consensus       178 ~~~tii~vsH~~~~-~~~~~d~i~~l~~-g~i~~~g  211 (211)
T cd03264         178 EDRIVILSTHIVED-VESLCNQVAVLNK-GKLVFEG  211 (211)
T ss_pred             CCCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEecC
Confidence            35789999898864 6677899999997 8988765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=87.47  E-value=0.92  Score=36.18  Aligned_cols=36  Identities=14%  Similarity=0.171  Sum_probs=31.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      |++|+|+.-|.|  +....+|++++|.. |+.+-.|+.+
T Consensus       517 ~~~tiIiitH~~--~~~~~~D~ii~l~~-g~i~~~g~~~  552 (571)
T TIGR02203       517 QGRTTLVIAHRL--STIEKADRIVVMDD-GRIVERGTHN  552 (571)
T ss_pred             CCCEEEEEehhh--HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence            689999999998  56888999999986 8999888754

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=87.46  E-value=1.1  Score=33.34  Aligned_cols=36  Identities=6%  Similarity=0.194  Sum_probs=30.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|.+.. + ...|++++|.. |++++.|+..
T Consensus       208 ~~~tIiiisH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~  243 (282)
T cd03291         208 ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTFS  243 (282)
T ss_pred             CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEECCHH
Confidence            36899999999875 3 57999999997 8999999754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=87.33  E-value=0.96  Score=35.82  Aligned_cols=37  Identities=14%  Similarity=-0.028  Sum_probs=31.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+..+.|++++|.. |++++.|+.+
T Consensus       444 ~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~  480 (501)
T PRK10762        444 EGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTRE  480 (501)
T ss_pred             CCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence            4789999999875 67788999999997 8999999876

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=87.30  E-value=0.94  Score=33.02  Aligned_cols=36  Identities=6%  Similarity=-0.077  Sum_probs=29.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. .+.++.|+++++ . |++++.|+..
T Consensus       191 ~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g~~~  226 (272)
T PRK15056        191 EGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASGPTE  226 (272)
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence            4789999999875 566788999877 5 8999999765

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=87.22  E-value=1.2  Score=32.32  Aligned_cols=36  Identities=11%  Similarity=-0.024  Sum_probs=29.5

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++-|.+. ++.+..|++++|.. |+.+..|+..
T Consensus       210 ~~tiiivth~~~-~~~~~~d~i~~l~~-G~i~~~g~~~  245 (265)
T PRK14252        210 KVTILIVTHNMQ-QAARVSDYTAYMYM-GELIEFGATD  245 (265)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            578999888764 47778999999986 8999998753

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=87.07  E-value=0.84  Score=41.17  Aligned_cols=37  Identities=3%  Similarity=0.106  Sum_probs=31.6

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+++|||+.-|.++  ....+|+|++|.+ |+++-+|++.
T Consensus      1400 ~~~~TvI~IaHRl~--ti~~~DrIlvL~~-G~ivE~g~p~ 1436 (1490)
T TIGR01271      1400 FSNCTVILSEHRVE--ALLECQQFLVIEG-SSVKQYDSIQ 1436 (1490)
T ss_pred             cCCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEeCCHH
Confidence            36899999999884  4566999999997 8999999875

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=86.70  E-value=1.3  Score=35.22  Aligned_cols=37  Identities=16%  Similarity=-0.059  Sum_probs=31.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+.++.|++++|.. |+++..|+..
T Consensus       454 ~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~  490 (506)
T PRK13549        454 QGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINH  490 (506)
T ss_pred             CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccc
Confidence            4789999999885 67788999999997 8999988765

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=86.70  E-value=1.1  Score=31.24  Aligned_cols=34  Identities=15%  Similarity=0.318  Sum_probs=27.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE   39 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~   39 (98)
                      ++.|||++.|.+..-  ...|++++|.. |+.+..|+
T Consensus       187 ~~~tii~~sh~~~~~--~~~d~i~~l~~-g~~~~~~~  220 (221)
T cd03244         187 KDCTVLTIAHRLDTI--IDSDRILVLDK-GRVVEFDS  220 (221)
T ss_pred             CCCEEEEEeCCHHHH--hhCCEEEEEEC-CeEEecCC
Confidence            467999999998653  34899999996 89998875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=86.58  E-value=1.1  Score=30.15  Aligned_cols=32  Identities=6%  Similarity=0.052  Sum_probs=26.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEE
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIY   36 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy   36 (98)
                      ++.|||++-|++. .+-+..|+++++.. |+.++
T Consensus       131 ~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~  162 (163)
T cd03216         131 QGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG  162 (163)
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence            3789999999876 46677999999987 88764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PLN03232 ABC transporter C family member; Provisional

Probab=86.47  E-value=1.1  Score=40.50  Aligned_cols=37  Identities=14%  Similarity=0.114  Sum_probs=32.1

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .|++|+|+.-|+++  ....+|++++|.. |+++..|+.+
T Consensus       788 l~~kT~IlvTH~~~--~l~~aD~Ii~L~~-G~i~~~Gt~~  824 (1495)
T PLN03232        788 LKGKTRVLVTNQLH--FLPLMDRIILVSE-GMIKEEGTFA  824 (1495)
T ss_pred             hcCCEEEEEECChh--hHHhCCEEEEEeC-CEEEEecCHH
Confidence            37899999999985  4788999999996 9999999754

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=86.40  E-value=1.4  Score=34.85  Aligned_cols=38  Identities=16%  Similarity=0.130  Sum_probs=31.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQ   42 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~   42 (98)
                      ++.|||++-|.+. .+....|++++|.. |+++..|+..+
T Consensus       190 ~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~  227 (501)
T PRK10762        190 QGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAEREVAD  227 (501)
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCcCc
Confidence            4679999999885 56788999999997 89999998763

>PLN03130 ABC transporter C family member; Provisional

Probab=86.35  E-value=0.93  Score=41.28  Aligned_cols=37  Identities=11%  Similarity=0.274  Sum_probs=31.9

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+++|||+--|..+.  ...+|+|++|.+ |+++-+|++.
T Consensus      1421 ~~~~TvI~IAHRL~t--I~~~DrIlVLd~-G~IvE~Gt~~ 1457 (1622)
T PLN03130       1421 FKSCTMLIIAHRLNT--IIDCDRILVLDA-GRVVEFDTPE 1457 (1622)
T ss_pred             CCCCEEEEEeCChHH--HHhCCEEEEEEC-CEEEEeCCHH
Confidence            378999999998876  445999999997 9999999876

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=86.30  E-value=1.2  Score=31.38  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=28.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL   40 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~   40 (98)
                      +++|||++.|.+..-  ...|++++|.. |+.+..|+.
T Consensus       185 ~~~tiii~sh~~~~~--~~~d~~~~l~~-g~i~~~~~~  219 (236)
T cd03253         185 KGRTTIVIAHRLSTI--VNADKIIVLKD-GRIVERGTH  219 (236)
T ss_pred             CCCEEEEEcCCHHHH--HhCCEEEEEEC-CEEEeeCCH
Confidence            378999999998754  34999999997 899988864

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=86.26  E-value=1.1  Score=33.93  Aligned_cols=37  Identities=14%  Similarity=-0.054  Sum_probs=30.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|++.. +.+..|++++|.. |+++..|++.
T Consensus       273 ~~~Tii~iTH~l~~-i~~~~Driivl~~-G~i~e~g~~~  309 (329)
T PRK14257        273 KKYSIIIVTHSMAQ-AQRISDETVFFYQ-GWIEEAGETK  309 (329)
T ss_pred             cCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence            56899999998654 4466999999997 8999999765

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=86.21  E-value=1.3  Score=31.78  Aligned_cols=37  Identities=5%  Similarity=0.021  Sum_probs=29.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+.. +-++.|++++|.. |+.++.|+..
T Consensus       195 ~~~tilivsh~~~~-~~~~~d~i~~l~~-G~i~~~~~~~  231 (251)
T PRK14249        195 QNYTIAIVTHNMQQ-AARASDWTGFLLT-GDLVEYGRTG  231 (251)
T ss_pred             cCCEEEEEeCCHHH-HHhhCCEEEEEeC-CeEEEeCCHH
Confidence            46899999997755 4467899999986 8999998754

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=85.94  E-value=1.4  Score=34.64  Aligned_cols=37  Identities=5%  Similarity=-0.210  Sum_probs=30.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+.+..|++++|.. |++++.|+..
T Consensus       184 ~g~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~  220 (490)
T PRK10938        184 SGITLVLVLNRFD-EIPDFVQFAGVLAD-CTLAETGERE  220 (490)
T ss_pred             cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence            3679999999874 56688999999997 8999998754

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=85.86  E-value=1.2  Score=34.20  Aligned_cols=36  Identities=17%  Similarity=0.186  Sum_probs=31.4

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|+|.+.|.+. +++++.|++++|.. |+++..|++.
T Consensus       187 g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~~~  222 (351)
T PRK11432        187 NITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGSPQ  222 (351)
T ss_pred             CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            689999999874 58889999999997 8999999865

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=85.81  E-value=1.5  Score=30.44  Aligned_cols=34  Identities=12%  Similarity=0.185  Sum_probs=27.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE   39 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~   39 (98)
                      +++|+|++-|.+..- .. .|++++|.+ |+++..|+
T Consensus       173 ~~~tiii~th~~~~~-~~-~d~v~~l~~-g~i~~~g~  206 (207)
T cd03369         173 TNSTILTIAHRLRTI-ID-YDKILVMDA-GEVKEYDH  206 (207)
T ss_pred             CCCEEEEEeCCHHHH-hh-CCEEEEEEC-CEEEecCC
Confidence            478999999998864 34 799999997 89988875

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=85.56  E-value=1.1  Score=33.04  Aligned_cols=37  Identities=3%  Similarity=-0.020  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+|+||.+-|- =.++=.+.|++++|.+ |++|+.|..+
T Consensus       182 egr~viFSSH~-m~EvealCDrvivlh~-Gevv~~gs~~  218 (245)
T COG4555         182 EGRAVIFSSHI-MQEVEALCDRVIVLHK-GEVVLEGSIE  218 (245)
T ss_pred             CCcEEEEeccc-HHHHHHhhheEEEEec-CcEEEcCCHH
Confidence            38999999874 4567779999999998 8999999865

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=85.53  E-value=1.6  Score=30.94  Aligned_cols=35  Identities=9%  Similarity=-0.053  Sum_probs=29.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL   40 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~   40 (98)
                      ++.|||++-|.+..-  ...|++++|.. |+.+..|+.
T Consensus       182 ~~~tiii~sH~~~~~--~~~d~i~~l~~-G~i~~~~~~  216 (236)
T TIGR03864       182 QGLSVLWATHLVDEI--EADDRLVVLHR-GRVLADGAA  216 (236)
T ss_pred             CCCEEEEEecChhhH--hhCCEEEEEeC-CeEEEeCCH
Confidence            378999999999764  34899999987 899998864

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=85.47  E-value=1.6  Score=33.88  Aligned_cols=36  Identities=11%  Similarity=-0.017  Sum_probs=31.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||...|.+ .+++.+.|++++|.. |+++..|++.
T Consensus       195 g~tiI~vTHd~-~ea~~laDri~vl~~-G~i~~~g~~~  230 (375)
T PRK09452        195 GITFVFVTHDQ-EEALTMSDRIVVMRD-GRIEQDGTPR  230 (375)
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            78999988886 568889999999997 9999999754

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=85.22  E-value=1.3  Score=31.93  Aligned_cols=36  Identities=11%  Similarity=0.110  Sum_probs=29.3

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|++.. +....|++++|.. |+.++.|+..
T Consensus       202 ~~tii~isH~~~~-~~~~~d~i~~l~~-g~i~~~~~~~  237 (258)
T PRK11701        202 GLAVVIVTHDLAV-ARLLAHRLLVMKQ-GRVVESGLTD  237 (258)
T ss_pred             CcEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEEeCCHH
Confidence            7899999898754 4456899999997 8999999754

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.20  E-value=1.3  Score=36.49  Aligned_cols=36  Identities=8%  Similarity=0.194  Sum_probs=32.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+||+|+-.|  .......||+|++|.. |++.-.|+..
T Consensus       535 ~~rTvI~IvH--~l~ll~~~DkI~~l~n-G~v~e~gth~  570 (591)
T KOG0057|consen  535 SGRTVIMIVH--RLDLLKDFDKIIVLDN-GTVKEYGTHS  570 (591)
T ss_pred             CCCeEEEEEe--cchhHhcCCEEEEEEC-CeeEEeccHH
Confidence            5899999999  5678899999999997 8999999865

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=85.18  E-value=1.6  Score=31.77  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=29.4

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++-|.+..-  ...|++++|.. |+.+..|+..
T Consensus       193 ~~tiii~sH~~~~~--~~~d~v~~l~~-G~i~~~g~~~  227 (271)
T PRK13632        193 KKTLISITHDMDEA--ILADKVIVFSE-GKLIAQGKPK  227 (271)
T ss_pred             CcEEEEEEechhHH--hhCCEEEEEEC-CEEEEecCHH
Confidence            48999999999753  36999999997 8999998754

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=85.16  E-value=1.4  Score=34.85  Aligned_cols=37  Identities=5%  Similarity=0.064  Sum_probs=30.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+....|++++|.+ |++++.|+..
T Consensus       190 ~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~  226 (500)
T TIGR02633       190 HGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMS  226 (500)
T ss_pred             CCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCcc
Confidence            4789999888765 56678999999997 8999999876

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=85.13  E-value=1.6  Score=32.49  Aligned_cols=37  Identities=3%  Similarity=-0.013  Sum_probs=30.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQ   42 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~   42 (98)
                      +|+||++.-|-.. .+.+.||+++.|+  ++.+++|++.+
T Consensus       188 eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G~~~~  224 (254)
T COG1121         188 EGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASGPPEE  224 (254)
T ss_pred             CCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEeccChhh
Confidence            3789998777654 5888999999997  48999999873

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=85.10  E-value=1.4  Score=30.71  Aligned_cols=33  Identities=9%  Similarity=0.061  Sum_probs=25.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR   38 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G   38 (98)
                      ++.|||++-|.+. .+....|++++|.. | .++.|
T Consensus       181 ~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g  213 (213)
T cd03235         181 EGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG  213 (213)
T ss_pred             cCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence            4789999999876 56678899999975 4 56554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=84.97  E-value=1.7  Score=32.92  Aligned_cols=37  Identities=8%  Similarity=0.030  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+.|||+..|..+. +..+.|++++|.. |+++..|+..
T Consensus       203 ~g~til~iTHdl~~-~~~~adri~vm~~-G~ive~g~~~  239 (326)
T PRK11022        203 ENMALVLITHDLAL-VAEAAHKIIVMYA-GQVVETGKAH  239 (326)
T ss_pred             cCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCHH
Confidence            37899999998874 5677999999997 9999999754

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=84.82  E-value=1.5  Score=34.98  Aligned_cols=36  Identities=11%  Similarity=-0.051  Sum_probs=30.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.+. .+....|++++|.. |++++.|+..
T Consensus       207 g~tvi~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~~  242 (529)
T PRK15134        207 NMGLLFITHNLS-IVRKLADRVAVMQN-GRCVEQNRAA  242 (529)
T ss_pred             CCeEEEEcCcHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence            789999999876 45577999999997 8999998754

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=84.81  E-value=1.4  Score=34.76  Aligned_cols=38  Identities=11%  Similarity=0.081  Sum_probs=31.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQ   42 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~   42 (98)
                      ++.|||++-|.+. .+....|++++|.. |+++..|+...
T Consensus       183 ~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~  220 (491)
T PRK10982        183 RGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG  220 (491)
T ss_pred             CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence            4789999989875 56678999999997 89999998663

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=84.53  E-value=0.8  Score=37.56  Aligned_cols=36  Identities=17%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +|.|+|+--|.||  ++...|+|++|.. |++--||+..
T Consensus       521 rG~~vvviaHRPs--~L~~~Dkilvl~~-G~~~~FG~r~  556 (580)
T COG4618         521 RGGTVVVIAHRPS--ALASVDKILVLQD-GRIAAFGPRE  556 (580)
T ss_pred             cCCEEEEEecCHH--HHhhcceeeeecC-ChHHhcCCHH
Confidence            5778888899776  6888999999996 9999999876

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=84.32  E-value=1.4  Score=35.06  Aligned_cols=37  Identities=11%  Similarity=-0.067  Sum_probs=30.9

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+.. +....|++++|.+ |++++.|+..
T Consensus       189 ~g~tiiivtHd~~~-~~~~~d~i~~l~~-G~i~~~g~~~  225 (510)
T PRK15439        189 QGVGIVFISHKLPE-IRQLADRISVMRD-GTIALSGKTA  225 (510)
T ss_pred             CCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEecChH
Confidence            47899999998764 5678999999997 8999999865

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=83.99  E-value=1.4  Score=33.94  Aligned_cols=36  Identities=14%  Similarity=0.058  Sum_probs=30.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|+|.+-|.+. ++..+.|++++|.+ |+.+..|++.
T Consensus       189 g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~~g~~~  224 (362)
T TIGR03258       189 ELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHGEPQ  224 (362)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            679999999875 47888999999997 8999999864

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=83.73  E-value=0.94  Score=33.70  Aligned_cols=30  Identities=10%  Similarity=0.079  Sum_probs=24.7

Q ss_pred             CCceEEEEecCCcHHHH------------hhccceEeecCCCe
Q 037141            3 KTNCSNTILSSSSCSRL------------FNLKDLMLMKRGGK   33 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~------------~~FD~lllL~~gG~   33 (98)
                      +|.+||.|.|.++.+-.            .+||++++|++ |+
T Consensus       218 ~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~-~~  259 (270)
T TIGR02858       218 AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSR-RK  259 (270)
T ss_pred             CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEec-CC
Confidence            57899999998877544            77999999997 55

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=83.69  E-value=1.1  Score=37.78  Aligned_cols=37  Identities=14%  Similarity=0.186  Sum_probs=32.0

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ..+||+|+.-|.++  .+...|+++||.+ |+++-.|+.+
T Consensus       656 ~~~~T~I~IaHRl~--ti~~adrIiVl~~-Gkiv~~gs~~  692 (709)
T COG2274         656 LQGRTVIIIAHRLS--TIRSADRIIVLDQ-GKIVEQGSHE  692 (709)
T ss_pred             hcCCeEEEEEccch--HhhhccEEEEccC-CceeccCCHH
Confidence            35799999999776  4778999999997 9999999865

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=83.45  E-value=1.6  Score=35.07  Aligned_cols=30  Identities=10%  Similarity=0.089  Sum_probs=25.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEE
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKII   35 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v   35 (98)
                      +++|||+.-|.++  ..+..|++++|.. |+.+
T Consensus       520 ~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i~  549 (555)
T TIGR01194       520 QGKTIIIISHDDQ--YFELADQIIKLAA-GCIV  549 (555)
T ss_pred             CCCEEEEEeccHH--HHHhCCEEEEEEC-CEEE
Confidence            5899999999985  5789999999997 7775

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=83.41  E-value=2.1  Score=33.95  Aligned_cols=37  Identities=11%  Similarity=-0.033  Sum_probs=30.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+ ..+..+.|++++|.. |++++.|+..
T Consensus       194 ~g~tiiivsHd~-~~~~~~~d~v~~l~~-G~i~~~g~~~  230 (510)
T PRK09700        194 EGTAIVYISHKL-AEIRRICDRYTVMKD-GSSVCSGMVS  230 (510)
T ss_pred             CCCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEeeecchh
Confidence            368999988875 445577899999996 8999999875

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=83.36  E-value=2.2  Score=33.79  Aligned_cols=36  Identities=6%  Similarity=0.003  Sum_probs=30.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL   40 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~   40 (98)
                      ++.|||++-|.+. .+....|++++|.. |+++..++.
T Consensus       458 ~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~  493 (510)
T PRK09700        458 DGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN  493 (510)
T ss_pred             CCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence            4789999999874 66788999999997 899988865

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=83.35  E-value=1.7  Score=34.54  Aligned_cols=36  Identities=17%  Similarity=0.083  Sum_probs=30.4

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. .+.++.|++++|.. |+++..|++.
T Consensus       478 g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~  513 (520)
T TIGR03269       478 EQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDPE  513 (520)
T ss_pred             CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            689999999886 57788999999997 8999988643

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=82.95  E-value=1.9  Score=32.98  Aligned_cols=36  Identities=8%  Similarity=0.053  Sum_probs=30.6

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +-||+.|-|- =.+|-.+.|+|+++.. |+.+|.|+..
T Consensus       207 ~aTVllTTH~-~~di~~lc~rv~~I~~-Gqlv~dg~l~  242 (325)
T COG4586         207 QATVLLTTHI-FDDIATLCDRVLLIDQ-GQLVFDGTLA  242 (325)
T ss_pred             CceEEEEecc-hhhHHHhhhheEEeeC-CcEeecccHH
Confidence            4588888774 5678899999999998 8999999876

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=82.80  E-value=2.3  Score=31.13  Aligned_cols=35  Identities=17%  Similarity=0.131  Sum_probs=30.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+..-.  ..|++++|.. |+.+..|+..
T Consensus       191 g~tiil~sH~~~~~~--~~d~i~~l~~-G~i~~~g~~~  225 (277)
T PRK13642        191 QLTVLSITHDLDEAA--SSDRILVMKA-GEIIKEAAPS  225 (277)
T ss_pred             CCEEEEEeCCHHHHH--hCCEEEEEEC-CEEEEeCCHH
Confidence            789999999998853  5899999997 8999998754

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=82.76  E-value=2  Score=35.47  Aligned_cols=36  Identities=6%  Similarity=0.079  Sum_probs=31.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|++++-|++.  ..+..|++++|.. |+.+..|+..
T Consensus       193 ~g~tilivsH~~~--~~~~~d~i~~l~~-G~i~~~g~~~  228 (648)
T PRK10535        193 RGHTVIIVTHDPQ--VAAQAERVIEIRD-GEIVRNPPAQ  228 (648)
T ss_pred             cCCEEEEECCCHH--HHHhCCEEEEEEC-CEEEeecCcc
Confidence            4789999999987  3357999999997 9999999876

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=82.23  E-value=1.7  Score=30.39  Aligned_cols=29  Identities=14%  Similarity=0.186  Sum_probs=23.4

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEE
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKII   35 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v   35 (98)
                      ++|||++-|.+.. + ...|++++|.. |+++
T Consensus       192 ~~tii~~tH~~~~-~-~~~d~v~~l~~-G~i~  220 (221)
T TIGR02211       192 NTSFLVVTHDLEL-A-KKLDRVLEMKD-GQLF  220 (221)
T ss_pred             CCEEEEEeCCHHH-H-hhcCEEEEEeC-CEec
Confidence            7899999999873 4 44799999986 7764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=81.85  E-value=2  Score=34.42  Aligned_cols=34  Identities=12%  Similarity=0.160  Sum_probs=28.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE   39 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~   39 (98)
                      +++|||+.-|.+  +....+|++++|.. |+.+-...
T Consensus       499 ~~~tvi~itH~~--~~~~~~d~i~~l~~-G~i~e~~~  532 (547)
T PRK10522        499 MGKTIFAISHDD--HYFIHADRLLEMRN-GQLSELTG  532 (547)
T ss_pred             CCCEEEEEEech--HHHHhCCEEEEEEC-CEEEEecC
Confidence            379999999998  45788999999997 78876643

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=81.76  E-value=2.5  Score=32.04  Aligned_cols=36  Identities=14%  Similarity=-0.048  Sum_probs=29.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||+..|-.+ .+..+-|++++|.. |+++..|+..
T Consensus       205 g~til~iTHdl~-~~~~~adrv~vm~~-G~ive~g~~~  240 (327)
T PRK11308        205 GLSYVFISHDLS-VVEHIADEVMVMYL-GRCVEKGTKE  240 (327)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            789999888765 55667899999997 8999999754

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=81.47  E-value=3  Score=31.50  Aligned_cols=36  Identities=6%  Similarity=-0.137  Sum_probs=30.0

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|... .+..+.|++++|.. |+++..|+..
T Consensus       209 g~tii~itHdl~-~v~~~~dri~vm~~-G~ive~g~~~  244 (330)
T PRK15093        209 NTTILLISHDLQ-MLSQWADKINVLYC-GQTVETAPSK  244 (330)
T ss_pred             CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            789999989864 45578999999997 8999999754

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=81.31  E-value=2  Score=40.63  Aligned_cols=43  Identities=9%  Similarity=0.056  Sum_probs=34.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhh
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECF   51 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf   51 (98)
                      +++|||++-|.+. ++-.+.|++++|++ |+.+..|+..    .+..-|
T Consensus      1109 ~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~Gs~~----~Lk~~~ 1151 (2272)
T TIGR01257      1109 SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSGTPL----FLKNCF 1151 (2272)
T ss_pred             CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCHH----HHHHhc
Confidence            5899999999875 56667899999997 8999999865    555544

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=81.27  E-value=2.6  Score=31.07  Aligned_cols=36  Identities=6%  Similarity=0.075  Sum_probs=28.1

Q ss_pred             CceEEEEecCCcHHHHhhccceE-eecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLM-LMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~ll-lL~~gG~~vy~G~~~   41 (98)
                      .+|||++-|.+. .+..+.|+++ +|.. |+++..|+..
T Consensus       229 ~~tiii~tH~~~-~i~~~~dri~v~l~~-G~i~~~g~~~  265 (285)
T PRK14254        229 EYTVVIVTHNMQ-QAARISDKTAVFLTG-GELVEFDDTD  265 (285)
T ss_pred             CCEEEEEeCCHH-HHHhhcCEEEEEeeC-CEEEEeCCHH
Confidence            479999999876 6667789975 5676 8999998643

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=81.20  E-value=2.9  Score=33.26  Aligned_cols=37  Identities=14%  Similarity=-0.031  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+.++.|++++|.. |++++.|...
T Consensus       452 ~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~  488 (510)
T PRK15439        452 QNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA  488 (510)
T ss_pred             CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence            4789999999885 57788999999996 8999988765

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=80.81  E-value=2.7  Score=33.43  Aligned_cols=36  Identities=6%  Similarity=-0.213  Sum_probs=30.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+.. +.+..|++++|.. |++++.|+..
T Consensus       219 g~tviivtHd~~~-~~~~~d~i~~l~~-G~i~~~g~~~  254 (520)
T TIGR03269       219 GISMVLTSHWPEV-IEDLSDKAIWLEN-GEIKEEGTPD  254 (520)
T ss_pred             CcEEEEEeCCHHH-HHHhcCEEEEEeC-CEEeeecCHH
Confidence            7899999998765 5678999999997 8999988754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=80.48  E-value=3  Score=31.23  Aligned_cols=36  Identities=14%  Similarity=0.013  Sum_probs=30.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +-|+|+.-|+-. +++..-|++.+|+. |++++.|+++
T Consensus       196 g~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~  231 (263)
T COG1127         196 GLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPE  231 (263)
T ss_pred             CCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHH
Confidence            457777778754 58888999999997 9999999976

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=80.35  E-value=2.7  Score=33.31  Aligned_cols=35  Identities=6%  Similarity=0.018  Sum_probs=29.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE   39 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~   39 (98)
                      ++.|||++-|.+. .+....|++++|.+ |+++..++
T Consensus       189 ~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~  223 (501)
T PRK11288        189 EGRVILYVSHRME-EIFALCDAITVFKD-GRYVATFD  223 (501)
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecC
Confidence            4789999999876 56678999999997 89887665

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=80.34  E-value=2.5  Score=34.85  Aligned_cols=37  Identities=14%  Similarity=0.126  Sum_probs=32.0

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+++|+++.-|.-..  .+.||+|++|.+ |+++..|..+
T Consensus       521 ~~~kTll~vTHrL~~--le~~drIivl~~-Gkiie~G~~~  557 (573)
T COG4987         521 AEGKTLLMVTHRLRG--LERMDRIIVLDN-GKIIEEGTHA  557 (573)
T ss_pred             hcCCeEEEEeccccc--HhhcCEEEEEEC-CeeeecCCHH
Confidence            378999999997655  778999999997 9999999876

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=80.26  E-value=2.7  Score=29.54  Aligned_cols=30  Identities=3%  Similarity=-0.068  Sum_probs=24.5

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEE
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIY   36 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy   36 (98)
                      +.|||++-|.+.. + ...|++++|.. |+++.
T Consensus       197 ~~tii~~sH~~~~-~-~~~d~i~~l~~-g~i~~  226 (228)
T PRK10584        197 GTTLILVTHDLQL-A-ARCDRRLRLVN-GQLQE  226 (228)
T ss_pred             CCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEe
Confidence            7899999999984 4 55899999986 77753

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.23  E-value=2.2  Score=38.56  Aligned_cols=38  Identities=13%  Similarity=0.209  Sum_probs=34.2

Q ss_pred             CCCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            1 MIKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         1 ~~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.+++|+|...|  ..+.+...|.|++|+. |+++..|+..
T Consensus       690 ~L~~KT~ILVTH--ql~~L~~ad~Iivl~~-G~I~~~Gty~  727 (1381)
T KOG0054|consen  690 LLRGKTVILVTH--QLQFLPHADQIIVLKD-GKIVESGTYE  727 (1381)
T ss_pred             hhcCCEEEEEeC--chhhhhhCCEEEEecC-CeEecccCHH
Confidence            457899999999  6788999999999996 9999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.71
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	92.6
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	92.4
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	92.31
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	92.19
1ji0_A	240	ABC transporter; ATP binding protein, structural g	92.06
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	92.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	91.69
1b0u_A	262	Histidine permease; ABC transporter, transport pro	91.64
1g6h_A	257	High-affinity branched-chain amino acid transport	91.61
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	91.52
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	91.43
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	91.26
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	91.21
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	91.1
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	90.98
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	90.89
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	90.88
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	90.81
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	90.77
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	90.76
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	90.74
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	90.69
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	90.66
2ghi_A	260	Transport protein; multidrug resistance protein, M	90.66
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	90.65
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	90.57
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	90.56
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	90.25
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	90.2
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	90.12
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	89.94
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	89.27
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	88.69
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	88.63
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	88.61
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	88.48
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	88.04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	87.74
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	86.63
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	86.53
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	85.98
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	85.61
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	84.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	81.89
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	81.68
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	81.01
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	80.11

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.71  E-value=0.05  Score=37.72  Aligned_cols=34  Identities=12%  Similarity=-0.026  Sum_probs=29.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE   39 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~   39 (98)
                      ++.|||++-|.+.. + ...|++++|.. |++++.|+
T Consensus       189 ~g~tvi~vtHd~~~-~-~~~d~v~~l~~-G~i~~~g~  222 (224)
T 2pcj_A          189 GGTSIVMVTHEREL-A-ELTHRTLEMKD-GKVVGEIT  222 (224)
T ss_dssp             TTCEEEEECSCHHH-H-TTSSEEEEEET-TEEEEEEE
T ss_pred             CCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEEee
Confidence            37899999999754 4 88999999997 89999886

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=92.60  E-value=0.093  Score=36.61  Aligned_cols=35  Identities=9%  Similarity=0.024  Sum_probs=30.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.+.  +..+.|++++|.. |+++..|+..
T Consensus       196 g~tvi~vtHd~~--~~~~~d~i~~l~~-G~i~~~~~~~  230 (235)
T 3tif_A          196 GKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKLR  230 (235)
T ss_dssp             CCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEECC
T ss_pred             CCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEcChh
Confidence            789999999986  4589999999997 8999998765

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.40  E-value=0.11  Score=40.89  Aligned_cols=36  Identities=14%  Similarity=0.215  Sum_probs=31.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+.-|.++.  ....|++++|.+ |+++..|+..
T Consensus       539 ~~~t~i~itH~l~~--~~~~d~i~~l~~-G~i~~~g~~~  574 (598)
T 3qf4_B          539 EGKTSIIIAHRLNT--IKNADLIIVLRD-GEIVEMGKHD  574 (598)
T ss_dssp             TTSEEEEESCCTTH--HHHCSEEEEECS-SSEEECSCHH
T ss_pred             CCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEECCHH
Confidence            68999999999985  355999999997 8999999865

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=92.31  E-value=0.11  Score=36.57  Aligned_cols=36  Identities=22%  Similarity=0.207  Sum_probs=30.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+..-  ...|++++|.. |+++..|+..
T Consensus       193 ~g~tviivtH~~~~~--~~~d~v~~l~~-G~i~~~g~~~  228 (247)
T 2ff7_A          193 KGRTVIIIAHRLSTV--KNADRIIVMEK-GKIVEQGKHK  228 (247)
T ss_dssp             TTSEEEEECSSGGGG--TTSSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEeCCHHHH--HhCCEEEEEEC-CEEEEECCHH
Confidence            478999999998743  45999999997 8999998753

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=92.19  E-value=0.15  Score=35.57  Aligned_cols=36  Identities=19%  Similarity=0.164  Sum_probs=30.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+.. + ...|++++|.. |+++..|+..
T Consensus       178 ~~~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~  213 (237)
T 2cbz_A          178 KNKTRILVTHSMSY-L-PQVDVIIVMSG-GKISEMGSYQ  213 (237)
T ss_dssp             TTSEEEEECSCSTT-G-GGSSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEecChHH-H-HhCCEEEEEeC-CEEEEeCCHH
Confidence            47899999999875 3 56999999997 8999998754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.06  E-value=0.14  Score=35.79  Aligned_cols=37  Identities=8%  Similarity=0.011  Sum_probs=30.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. .+..+.|++++|.. |+++..|+..
T Consensus       188 ~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~  224 (240)
T 1ji0_A          188 EGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKAS  224 (240)
T ss_dssp             TTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred             CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            4789999999874 46678999999997 8999998654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=92.00  E-value=0.12  Score=37.88  Aligned_cols=36  Identities=14%  Similarity=0.162  Sum_probs=30.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||+.-|.++.-  ...|++++|.. |+++..|+..
T Consensus       238 ~~~Tvi~itH~l~~~--~~aD~i~vl~~-G~iv~~G~~~  273 (306)
T 3nh6_A          238 ANRTTIVVAHRLSTV--VNADQILVIKD-GCIVERGRHE  273 (306)
T ss_dssp             TTSEEEEECCSHHHH--HTCSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEEcChHHH--HcCCEEEEEEC-CEEEEECCHH
Confidence            578999999988753  34999999997 9999999865

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.69  E-value=0.11  Score=40.80  Aligned_cols=36  Identities=14%  Similarity=0.173  Sum_probs=31.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+.-|.++.  ....|++++|.+ |+++..|+..
T Consensus       527 ~~~tvi~itH~l~~--~~~~d~i~vl~~-G~i~~~g~~~  562 (587)
T 3qf4_A          527 KGCTTFIITQKIPT--ALLADKILVLHE-GKVAGFGTHK  562 (587)
T ss_dssp             TTCEEEEEESCHHH--HTTSSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEecChHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence            68999999999875  457999999997 9999999865

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=91.64  E-value=0.18  Score=35.72  Aligned_cols=37  Identities=8%  Similarity=0.024  Sum_probs=30.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++.|.+. .+..+.|++++|.. |+++..|++.
T Consensus       202 ~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~  238 (262)
T 1b0u_A          202 EGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDPE  238 (262)
T ss_dssp             TTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            3789999999864 56678999999997 8999998743

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=91.61  E-value=0.12  Score=36.47  Aligned_cols=37  Identities=22%  Similarity=0.021  Sum_probs=31.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+..+.|++++|.. |++++.|+..
T Consensus       202 ~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~  238 (257)
T 1g6h_A          202 KGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE  238 (257)
T ss_dssp             TTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESH
T ss_pred             CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence            3789999999985 45678999999997 8999999765

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=91.52  E-value=0.27  Score=34.00  Aligned_cols=36  Identities=6%  Similarity=0.194  Sum_probs=29.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++.|.+.. + ...|++++|.. |+++..|+..
T Consensus       179 ~~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~  214 (229)
T 2pze_A          179 ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTFS  214 (229)
T ss_dssp             TTSEEEEECCCHHH-H-HHCSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEcCChHH-H-HhCCEEEEEEC-CEEEEECCHH
Confidence            47899999999754 3 46999999997 8999998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=91.43  E-value=0.12  Score=36.21  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=29.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+.. + ...|++++|.. |+++..|+..
T Consensus       187 ~~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~  222 (243)
T 1mv5_A          187 KGRTTLVIAHRLST-I-VDADKIYFIEK-GQITGSGKHN  222 (243)
T ss_dssp             TTSEEEEECCSHHH-H-HHCSEEEEEET-TEECCCSCHH
T ss_pred             CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEeCCHH
Confidence            47899999999763 3 56999999997 8999888754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=91.26  E-value=0.18  Score=39.52  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=30.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||+.-|.++.  ....|++++|.+ |+++..|+.+
T Consensus       528 ~~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~~  563 (582)
T 3b5x_A          528 KNKTVLVIAHRLST--IEQADEILVVDE-GEIIERGRHA  563 (582)
T ss_pred             CCCEEEEEecCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence            58999999999864  357999999997 8999999754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.21  E-value=0.16  Score=36.07  Aligned_cols=37  Identities=11%  Similarity=0.016  Sum_probs=30.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. .+..+.|++++|.. |++++.|+..
T Consensus       195 ~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~  231 (256)
T 1vpl_A          195 EGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTVE  231 (256)
T ss_dssp             TTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEHH
T ss_pred             CCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCHH
Confidence            4789999999874 45567999999997 8999998754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=91.10  E-value=0.23  Score=35.90  Aligned_cols=36  Identities=8%  Similarity=0.251  Sum_probs=30.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+..  ....|++++|.. |+++..|+..
T Consensus       208 ~~~tviivtHd~~~--~~~~d~i~~l~~-G~i~~~g~~~  243 (290)
T 2bbs_A          208 ANKTRILVTSKMEH--LKKADKILILHE-GSSYFYGTFS  243 (290)
T ss_dssp             TTSEEEEECCCHHH--HHHSSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEecCHHH--HHcCCEEEEEEC-CeEEEeCCHH
Confidence            47899999999753  356999999997 8999999865

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=90.98  E-value=0.23  Score=34.80  Aligned_cols=36  Identities=11%  Similarity=0.055  Sum_probs=30.2

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. .+..+.|++++|.. |+++..|++.
T Consensus       177 g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~  212 (240)
T 2onk_A          177 DVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKLK  212 (240)
T ss_dssp             TCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            789999999874 46678999999997 8999998743

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=90.88  E-value=0.2  Score=35.11  Aligned_cols=37  Identities=8%  Similarity=-0.004  Sum_probs=29.7

Q ss_pred             CCceEEEEecCCcHHHHhh-ccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFN-LKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~-FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+.. +..+ .|++++|.. |+++..|+..
T Consensus       192 ~g~tvi~vtHd~~~-~~~~~~d~v~~l~~-G~i~~~g~~~  229 (250)
T 2d2e_A          192 PNFGALVITHYQRI-LNYIQPDKVHVMMD-GRVVATGGPE  229 (250)
T ss_dssp             TTCEEEEECSSSGG-GGTSCCSEEEEEET-TEEEEEESHH
T ss_pred             cCCEEEEEecCHHH-HHHhcCCEEEEEEC-CEEEEEeCHH
Confidence            47899999999763 4444 499999997 8999999754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=90.81  E-value=0.19  Score=35.72  Aligned_cols=37  Identities=5%  Similarity=0.020  Sum_probs=30.2

Q ss_pred             CCceEEEEecCCcHHHHhh-ccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFN-LKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~-FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+.. +..+ .|++++|.. |++++.|+..
T Consensus       213 ~g~tviivtHd~~~-~~~~~~d~v~~l~~-G~i~~~g~~~  250 (267)
T 2zu0_C          213 GKRSFIIVTHYQRI-LDYIKPDYVHVLYQ-GRIVKSGDFT  250 (267)
T ss_dssp             SSCEEEEECSSGGG-GGTSCCSEEEEEET-TEEEEEECTT
T ss_pred             cCCEEEEEeeCHHH-HHhhcCCEEEEEEC-CEEEEEcCHH
Confidence            47899999999753 3343 699999997 8999999876

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=90.77  E-value=0.21  Score=35.29  Aligned_cols=37  Identities=14%  Similarity=0.025  Sum_probs=30.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+. .+..+.|++++|.+ |+++..|+..
T Consensus       182 ~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~  218 (249)
T 2qi9_C          182 QGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE  218 (249)
T ss_dssp             TTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            3789999999875 45678999999997 8999998754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=90.76  E-value=0.16  Score=43.72  Aligned_cols=37  Identities=14%  Similarity=0.086  Sum_probs=32.5

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+++|||+--|..+.  ...+|+|+||.+ |++|-+|++.
T Consensus      1264 ~~~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth~ 1300 (1321)
T 4f4c_A         1264 REGRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTHT 1300 (1321)
T ss_dssp             SSSSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECHH
T ss_pred             cCCCEEEEeccCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence            479999999998875  567999999997 9999999876

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=90.74  E-value=0.16  Score=39.73  Aligned_cols=36  Identities=11%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+.-|.++.  ....|++++|.+ |+++..|+.+
T Consensus       525 ~~~t~i~itH~l~~--~~~~d~i~~l~~-G~i~~~g~~~  560 (578)
T 4a82_A          525 KDRTTLIVAHRLST--ITHADKIVVIEN-GHIVETGTHR  560 (578)
T ss_dssp             TTSEEEEECSSGGG--TTTCSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEECCHH
Confidence            67999999999986  356999999997 9999999865

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=90.69  E-value=0.21  Score=35.56  Aligned_cols=35  Identities=11%  Similarity=0.028  Sum_probs=29.5

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||++.|.+..  ....|++++|.. |+++..|+..
T Consensus       207 g~tviivtHd~~~--~~~~d~v~~l~~-G~i~~~g~~~  241 (271)
T 2ixe_A          207 SRTVLLITQQLSL--AERAHHILFLKE-GSVCEQGTHL  241 (271)
T ss_dssp             TSEEEEECSCHHH--HTTCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence            7899999999764  345999999997 8999999754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=90.66  E-value=0.21  Score=35.85  Aligned_cols=36  Identities=11%  Similarity=0.068  Sum_probs=31.2

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      |.|||++.|.+.. +..+.|++++|.. |++++.|++.
T Consensus       194 g~tvi~vtHdl~~-~~~~~drv~~l~~-G~i~~~g~~~  229 (275)
T 3gfo_A          194 GITIIIATHDIDI-VPLYCDNVFVMKE-GRVILQGNPK  229 (275)
T ss_dssp             CCEEEEEESCCSS-GGGGCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEECCHH
Confidence            7899999999864 5578999999997 8999999865

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=90.66  E-value=0.23  Score=35.14  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=30.2

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+..  ....|++++|.. |+++..|+..
T Consensus       203 ~~~tviivtH~~~~--~~~~d~i~~l~~-G~i~~~g~~~  238 (260)
T 2ghi_A          203 KNRTLIIIAHRLST--ISSAESIILLNK-GKIVEKGTHK  238 (260)
T ss_dssp             TTSEEEEECSSGGG--STTCSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEcCCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence            57899999999875  356999999997 8999998754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=90.65  E-value=0.29  Score=34.83  Aligned_cols=37  Identities=11%  Similarity=-0.068  Sum_probs=30.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|.+. .+..+.|++++|.+ |+++..|+..
T Consensus       208 ~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~  244 (263)
T 2olj_A          208 EGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGKPE  244 (263)
T ss_dssp             TTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            3789999999864 46678999999997 8999998743

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=90.57  E-value=0.28  Score=36.92  Aligned_cols=36  Identities=8%  Similarity=-0.065  Sum_probs=31.3

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      |.|||++.|... .+..+.|++++|.. |+++..|++.
T Consensus       214 g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~iv~~g~~~  249 (366)
T 3tui_C          214 GLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTVS  249 (366)
T ss_dssp             CCEEEEEESCHH-HHHHHCSEEEEEET-TEEEECCBHH
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            789999999874 57788999999997 9999999754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=90.56  E-value=0.27  Score=34.97  Aligned_cols=36  Identities=14%  Similarity=0.184  Sum_probs=30.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|... .+..+.|++++|.+ |++++.|++.
T Consensus       198 ~~tvi~vtHdl~-~~~~~~d~v~vl~~-G~i~~~g~~~  233 (266)
T 4g1u_C          198 PLAVCCVLHDLN-LAALYADRIMLLAQ-GKLVACGTPE  233 (266)
T ss_dssp             SEEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            469999999764 46678999999997 8999999865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=90.25  E-value=0.27  Score=36.88  Aligned_cols=37  Identities=14%  Similarity=0.166  Sum_probs=31.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+.|||++.|... ++..+.|++++|.+ |+++..|++.
T Consensus       188 ~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~  224 (359)
T 3fvq_A          188 NGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTASPH  224 (359)
T ss_dssp             TTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCHH
Confidence            3789999999765 68889999999997 9999999764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=90.20  E-value=0.2  Score=39.20  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=30.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||+.-|.++.  ....|++++|.+ |+++..|+.+
T Consensus       528 ~~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~~  563 (582)
T 3b60_A          528 KNRTSLVIAHRLST--IEQADEIVVVED-GIIVERGTHS  563 (582)
T ss_dssp             TTSEEEEECSCGGG--TTTCSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEecCHH
Confidence            58999999999975  357999999997 8999999754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=90.12  E-value=0.24  Score=37.47  Aligned_cols=36  Identities=3%  Similarity=0.088  Sum_probs=30.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++.|||++-|+.  +...+.|++++|.. |+++..|++.
T Consensus       203 ~~~tvi~vtHd~--e~~~~aDri~vl~~-G~i~~~g~~~  238 (390)
T 3gd7_A          203 ADCTVILCEARI--EAMLECDQFLVIEE-NKVRQYDSIL  238 (390)
T ss_dssp             TTSCEEEECSSS--GGGTTCSEEEEEET-TEEEEESSHH
T ss_pred             CCCEEEEEEcCH--HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            478999999996  45567999999997 9999999764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=89.94  E-value=0.21  Score=43.01  Aligned_cols=37  Identities=16%  Similarity=0.151  Sum_probs=32.7

Q ss_pred             CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .|+||+|+.-|+++  .....|+|++|.. |+++..|+..
T Consensus       601 ~~~~T~iiiaHrls--~i~~aD~Iivl~~-G~ive~Gth~  637 (1321)
T 4f4c_A          601 AKGRTTIIIAHRLS--TIRNADLIISCKN-GQVVEVGDHR  637 (1321)
T ss_dssp             HTTSEEEEECSCTT--TTTTCSEEEEEET-TEEEEEECHH
T ss_pred             hCCCEEEEEcccHH--HHHhCCEEEEeeC-CeeeccCCHH
Confidence            37999999999998  4688999999997 9999999864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=89.27  E-value=0.29  Score=34.69  Aligned_cols=37  Identities=8%  Similarity=0.088  Sum_probs=30.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||++-|.+.. +..+.|++++|.. |+++..|+..
T Consensus       187 ~g~tii~vtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~  223 (266)
T 2yz2_A          187 LGKTVILISHDIET-VINHVDRVVVLEK-GKKVFDGTRM  223 (266)
T ss_dssp             TTCEEEEECSCCTT-TGGGCSEEEEEET-TEEEEEEEHH
T ss_pred             cCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence            37899999999864 5567899999997 8999998643

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=88.69  E-value=0.42  Score=33.68  Aligned_cols=35  Identities=9%  Similarity=0.022  Sum_probs=29.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+.. +..+.|++++|.. |+ ++.|+..
T Consensus       179 g~tvi~vtHd~~~-~~~~~d~v~~l~~-G~-~~~g~~~  213 (253)
T 2nq2_C          179 NMTVVFTTHQPNQ-VVAIANKTLLLNK-QN-FKFGETR  213 (253)
T ss_dssp             CCEEEEEESCHHH-HHHHCSEEEEEET-TE-EEEEEHH
T ss_pred             CCEEEEEecCHHH-HHHhCCEEEEEeC-Ce-EecCCHH
Confidence            7899999998743 5678999999997 89 9988754

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=88.63  E-value=0.49  Score=35.18  Aligned_cols=36  Identities=6%  Similarity=0.025  Sum_probs=31.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.+ .++..+.|++++|.+ |+++..|++.
T Consensus       191 g~tvi~vTHd~-~~~~~~adri~vl~~-G~i~~~g~~~  226 (353)
T 1oxx_K          191 GVTLLVVSHDP-ADIFAIADRVGVLVK-GKLVQVGKPE  226 (353)
T ss_dssp             CCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            78999999986 467889999999997 8999999764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=88.61  E-value=0.5  Score=35.12  Aligned_cols=36  Identities=11%  Similarity=0.059  Sum_probs=30.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.. .++..+.|++++|.. |+++..|++.
T Consensus       178 g~tii~vTHd~-~~~~~~adri~vl~~-G~i~~~g~~~  213 (348)
T 3d31_A          178 KLTVLHITHDQ-TEARIMADRIAVVMD-GKLIQVGKPE  213 (348)
T ss_dssp             TCEEEEEESCH-HHHHHHCSEEEEESS-SCEEEEECHH
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEECCHH
Confidence            78999999986 467889999999997 8999999754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=88.48  E-value=0.49  Score=35.42  Aligned_cols=36  Identities=8%  Similarity=0.039  Sum_probs=31.2

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.. .++..+.|++++|.. |+++..|++.
T Consensus       190 g~tvi~vTHd~-~~a~~~adri~vl~~-G~i~~~g~~~  225 (372)
T 1g29_1          190 GVTTIYVTHDQ-VEAMTMGDRIAVMNR-GVLQQVGSPD  225 (372)
T ss_dssp             TCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEECCCH-HHHHHhCCEEEEEeC-CEEEEeCCHH
Confidence            68999999986 467889999999997 8999999765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=88.04  E-value=0.55  Score=35.11  Aligned_cols=36  Identities=8%  Similarity=0.123  Sum_probs=31.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.. .++..+.|++++|.. |+++..|++.
T Consensus       184 g~tvi~vTHd~-~~a~~~adri~vl~~-G~i~~~g~~~  219 (362)
T 2it1_A          184 GITTVYVTHDQ-AEALAMADRIAVIRE-GEILQVGTPD  219 (362)
T ss_dssp             TCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEECCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            68999999986 467889999999997 8999999764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=87.74  E-value=0.6  Score=34.88  Aligned_cols=36  Identities=8%  Similarity=0.157  Sum_probs=31.0

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.. .++..+.|++++|.+ |+++..|++.
T Consensus       184 g~tvi~vTHd~-~~~~~~adri~vl~~-G~i~~~g~~~  219 (359)
T 2yyz_A          184 GITSVYVTHDQ-AEAMTMASRIAVFNQ-GKLVQYGTPD  219 (359)
T ss_dssp             CCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEEcCCH-HHHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            68999999986 457788999999997 8999999765

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=86.63  E-value=0.71  Score=34.42  Aligned_cols=36  Identities=11%  Similarity=0.085  Sum_probs=30.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.+ .++..+.|++++|.. |+++..|++.
T Consensus       196 g~tvi~vTHd~-~~a~~~adri~vl~~-G~i~~~g~~~  231 (355)
T 1z47_A          196 GVTSVFVTHDQ-EEALEVADRVLVLHE-GNVEQFGTPE  231 (355)
T ss_dssp             TCEEEEECSCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEECCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            68999999986 457788999999997 8999999764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=86.53  E-value=0.75  Score=34.48  Aligned_cols=36  Identities=8%  Similarity=0.121  Sum_probs=31.0

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++.|.. .++..+.|++++|.. |+++..|++.
T Consensus       192 g~tvi~vTHd~-~~a~~~adri~vl~~-G~i~~~g~~~  227 (372)
T 1v43_A          192 KVTTIYVTHDQ-VEAMTMGDRIAVMNR-GQLLQIGSPT  227 (372)
T ss_dssp             TCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEeCCHH
Confidence            67999999986 467789999999997 8999999765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=85.98  E-value=0.27  Score=35.27  Aligned_cols=36  Identities=14%  Similarity=0.086  Sum_probs=30.3

Q ss_pred             CceE--EEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCS--NTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tv--i~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++||  |++-|.+. .+..+.|++++|.. |++++.|+..
T Consensus       211 g~tv~~iivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~  248 (279)
T 2ihy_A          211 YPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGAVE  248 (279)
T ss_dssp             CTTCEEEEEESCGG-GCCTTCCEEEEEET-TEEEEEEEHH
T ss_pred             CCEEEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            6788  99999975 46678999999997 8999998754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=85.61  E-value=0.86  Score=34.38  Aligned_cols=36  Identities=3%  Similarity=0.042  Sum_probs=31.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      |.|||...|.. .++..+.|++++|.. |+++..|++.
T Consensus       184 g~tii~vTHd~-~ea~~~aDri~vl~~-G~i~~~g~~~  219 (381)
T 3rlf_A          184 GRTMIYVTHDQ-VEAMTLADKIVVLDA-GRVAQVGKPL  219 (381)
T ss_dssp             CCEEEEECSCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEEECCH-HHHHHhCCEEEEEEC-CEEEEEeCHH
Confidence            78999988866 468889999999997 9999999865

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=84.00  E-value=0.87  Score=36.14  Aligned_cols=36  Identities=8%  Similarity=0.066  Sum_probs=30.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEee------cCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLM------KRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL------~~gG~~vy~G~~~   41 (98)
                      +|.|||+.-|.+.  .....|++++|      .. |++++.|++.
T Consensus       595 ~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~-G~i~~~g~~~  636 (670)
T 3ux8_A          595 NGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRG-GQIVAVGTPE  636 (670)
T ss_dssp             TTCEEEEECCCHH--HHTTCSEEEEEESSSGGGC-CEEEEEECHH
T ss_pred             CCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCC-CEEEEecCHH
Confidence            4789999999986  34779999999      65 9999999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=81.89  E-value=0.9  Score=39.01  Aligned_cols=36  Identities=14%  Similarity=0.075  Sum_probs=31.3

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +|+|||+.-|.++. + ...|++++|.. |+++..|+..
T Consensus      1219 ~~~tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~~ 1254 (1284)
T 3g5u_A         1219 EGRTCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTHQ 1254 (1284)
T ss_dssp             SSSCEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECHH
T ss_pred             CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCHH
Confidence            68999999999986 3 56999999997 9999999864

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=81.68  E-value=1.2  Score=32.64  Aligned_cols=33  Identities=6%  Similarity=-0.018  Sum_probs=27.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEee----cCCCeEEEec
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLM----KRGGKIIYFR   38 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL----~~gG~~vy~G   38 (98)
                      ++.|||++-|.|  ++....|++++|    .. |+++-..
T Consensus       345 ~~~~vi~itH~~--~~~~~~d~i~~l~k~~~~-G~~~~~~  381 (415)
T 4aby_A          345 DTRQVLVVTHLA--QIAARAHHHYKVEKQVED-GRTVSHV  381 (415)
T ss_dssp             TTSEEEEECSCH--HHHTTCSEEEEEEEEEET-TEEEEEE
T ss_pred             CCCEEEEEeCcH--HHHhhcCeEEEEEEeccC-CceEEEE
Confidence            578999999997  567899999999    75 7776543

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=81.01  E-value=0.98  Score=33.33  Aligned_cols=31  Identities=6%  Similarity=0.012  Sum_probs=25.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEE
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIY   36 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy   36 (98)
                      +|.|||++-|.+..  ....|++++|.. |+++.
T Consensus       334 ~g~tvi~itH~~~~--~~~~d~~~~l~~-G~i~~  364 (365)
T 3qf7_A          334 LNKVIVFITHDREF--SEAFDRKLRITG-GVVVN  364 (365)
T ss_dssp             SSSEEEEEESCHHH--HTTCSCEEEEET-TEEC-
T ss_pred             CCCEEEEEecchHH--HHhCCEEEEEEC-CEEEe
Confidence            47899999999854  678999999997 88753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=80.11  E-value=1.2  Score=31.67  Aligned_cols=34  Identities=0%  Similarity=-0.154  Sum_probs=28.5

Q ss_pred             eEEEEecCCcHHHHhhcc-ceEeecCCCeEEEecCCC
Q 037141            6 CSNTILSSSSCSRLFNLK-DLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         6 tvi~tIhQPs~~i~~~FD-~lllL~~gG~~vy~G~~~   41 (98)
                      |||++-|.+. .+..+.| ++++|.. |+++..|++.
T Consensus       177 tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~~  211 (263)
T 2pjz_A          177 EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISVS  211 (263)
T ss_dssp             EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEHH
T ss_pred             cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCHH
Confidence            8999999984 4557889 9999997 8999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.39
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.28
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.22
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.18
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.18
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.98
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.11
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.36
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.34
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.73
d2awna2	232	Maltose transport protein MalK, N-terminal domain	92.62
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	92.33
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	90.98
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	90.68
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	90.38
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	90.12
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	89.69
d1g2912	240	Maltose transport protein MalK, N-terminal domain	89.29
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	88.86

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.0012  Score=46.36  Aligned_cols=36  Identities=8%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|+|+..|.+  +....+|+|++|.. |++++.|++.
T Consensus       207 ~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~  242 (281)
T d1r0wa_         207 ANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFS  242 (281)
T ss_dssp             TTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEechH--HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            578999999987  45688999999997 9999999876

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0012  Score=45.54  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=31.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      |++|||+.-|+++  ....+|+|++|.. |+++..|+..
T Consensus       187 ~~~Tvi~itH~l~--~~~~~D~i~vl~~-G~Iv~~G~~~  222 (241)
T d2pmka1         187 KGRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQGKHK  222 (241)
T ss_dssp             TTSEEEEECSSGG--GGTTSSEEEEEET-TEEEEEECHH
T ss_pred             CCCEEEEEECCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence            6899999999996  3578999999996 9999999865

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.22  E-value=0.0012  Score=45.79  Aligned_cols=36  Identities=11%  Similarity=0.182  Sum_probs=31.7

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||+.-|.++  ....+|+|++|.. |+++..|+..
T Consensus       202 ~~~TvI~itH~~~--~~~~~D~ii~l~~-G~iv~~G~~~  237 (255)
T d2hyda1         202 KDRTTLIVAHRLS--TITHADKIVVIEN-GHIVETGTHR  237 (255)
T ss_dssp             TTSEEEEECSSGG--GTTTCSEEEEEET-TEEEEEECHH
T ss_pred             cCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence            6899999999986  4578999999996 9999999865

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.18  E-value=0.0013  Score=45.50  Aligned_cols=36  Identities=17%  Similarity=0.172  Sum_probs=31.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||+.-|.++  ....+|+|++|.. |+++..|++.
T Consensus       200 ~~~Tvi~itH~l~--~~~~~D~v~vl~~-G~Iv~~G~~~  235 (253)
T d3b60a1         200 KNRTSLVIAHRLS--TIEQADEIVVVED-GIIVERGTHS  235 (253)
T ss_dssp             TTSEEEEECSCGG--GTTTCSEEEEEET-TEEEEEECHH
T ss_pred             cCCEEEEEECCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence            5789999999986  4578999999997 9999999865

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.18  E-value=0.0012  Score=45.42  Aligned_cols=36  Identities=14%  Similarity=0.206  Sum_probs=31.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +++|||+..|.++  ....+|+|++|.. |+++..|+..
T Consensus       187 ~~~Tvi~itH~l~--~~~~~D~i~vl~~-G~iv~~G~~~  222 (242)
T d1mv5a_         187 KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGKHN  222 (242)
T ss_dssp             TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSCHH
T ss_pred             CCCEEEEEECCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence            6899999999985  4467999999997 9999999875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0018  Score=44.71  Aligned_cols=35  Identities=11%  Similarity=0.021  Sum_probs=30.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      ++|||+..|..+  ..+.+|+|++|.. |+++..|++.
T Consensus       202 ~~Tvi~itH~l~--~~~~aDrI~vl~~-G~iv~~Gt~~  236 (251)
T d1jj7a_         202 SRSVLLITQHLS--LVEQADHILFLEG-GAIREGGTHQ  236 (251)
T ss_dssp             GCEEEEECSCHH--HHHTCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence            789999999974  5678999999997 9999999865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.11  E-value=0.0059  Score=41.73  Aligned_cols=37  Identities=11%  Similarity=0.016  Sum_probs=32.0

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +|.|||++-|... ++.++.||+++|.. |++++.|+++
T Consensus       182 ~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~~  218 (238)
T d1vpla_         182 EGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTVE  218 (238)
T ss_dssp             TTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEHH
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            5789999999864 57778999999997 9999999865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.36  E-value=0.013  Score=39.98  Aligned_cols=37  Identities=8%  Similarity=0.017  Sum_probs=32.4

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +|.|||++-|.. .++.++.|++++|.+ |++++.|++.
T Consensus       188 ~g~til~~tH~l-~~~~~~~drv~vl~~-G~iv~~g~~~  224 (240)
T d1ji0a_         188 EGTTILLVEQNA-LGALKVAHYGYVLET-GQIVLEGKAS  224 (240)
T ss_dssp             TTCCEEEEESCH-HHHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred             CCCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            478999998887 478899999999997 9999999865

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.0074  Score=40.87  Aligned_cols=37  Identities=14%  Similarity=0.025  Sum_probs=32.1

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +|.|||++.|... ++.++.|++++|.. |++++.|+++
T Consensus       181 ~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~~  217 (231)
T d1l7vc_         181 QGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE  217 (231)
T ss_dssp             TTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBHH
T ss_pred             CCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEECCHH
Confidence            5789999999965 48889999999996 9999999764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.73  E-value=0.041  Score=37.33  Aligned_cols=36  Identities=11%  Similarity=0.077  Sum_probs=31.4

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. ++..+.|++++|.. |+++..|++.
T Consensus       178 g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~~  213 (229)
T d3d31a2         178 KLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKPE  213 (229)
T ss_dssp             TCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECHH
T ss_pred             CcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            679999999875 67788999999997 9999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.056  Score=36.65  Aligned_cols=37  Identities=3%  Similarity=0.022  Sum_probs=31.5

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      .+.|||++-|.. .++..+-|++++|.. |+++..|++.
T Consensus       180 ~g~tii~vTHd~-~~a~~~~dri~vm~~-G~iv~~G~~~  216 (232)
T d2awna2         180 LGRTMIYVTHDQ-VEAMTLADKIVVLDA-GRVAQVGKPL  216 (232)
T ss_dssp             SCCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             cCCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEEeCHH
Confidence            478999998876 567788899999997 9999999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.33  E-value=0.049  Score=36.88  Aligned_cols=34  Identities=9%  Similarity=0.035  Sum_probs=29.1

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL   40 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~   40 (98)
                      +.|||+..|.+.  +..+.||+++|.+ |+++.-|++
T Consensus       196 g~tii~vTHd~~--~a~~~drv~~m~~-G~Iv~~g~~  229 (230)
T d1l2ta_         196 GKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKL  229 (230)
T ss_dssp             CCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEEC
T ss_pred             CCEEEEECCCHH--HHHhCCEEEEEEC-CEEEEeccC
Confidence            789999999874  4489999999997 899998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.98  E-value=0.084  Score=35.89  Aligned_cols=37  Identities=22%  Similarity=0.021  Sum_probs=31.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +|.|||++-|... ++.++.|++++|.. |++|..|+++
T Consensus       199 ~g~til~vsHdl~-~~~~~~Drv~vm~~-G~iv~~g~~~  235 (254)
T d1g6ha_         199 KGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE  235 (254)
T ss_dssp             TTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESH
T ss_pred             CCCEEEEEeCcHH-HHHHhCCEEEEEeC-CEEEEEecHH
Confidence            5789999888764 57788999999997 9999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.68  E-value=0.093  Score=35.89  Aligned_cols=37  Identities=8%  Similarity=0.024  Sum_probs=30.6

Q ss_pred             CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +|.|||+..|... ++..+.||+++|.. |++|..|++.
T Consensus       198 ~g~til~vtHdl~-~~~~~adri~vm~~-G~iv~~g~~~  234 (258)
T d1b0ua_         198 EGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDPE  234 (258)
T ss_dssp             TTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             cCCceEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            4788888877664 56788999999997 9999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.38  E-value=0.11  Score=35.39  Aligned_cols=36  Identities=11%  Similarity=0.055  Sum_probs=30.7

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. ++..+.|++++|.. |+++..|+++
T Consensus       177 g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~~  212 (240)
T d2onka1         177 DVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKLK  212 (240)
T ss_dssp             TCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecHH
Confidence            678999888764 56888999999997 9999999764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.12  E-value=0.13  Score=35.00  Aligned_cols=36  Identities=8%  Similarity=0.111  Sum_probs=30.9

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+. ++..+.|++++|.+ |+++..|++.
T Consensus       187 g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~~  222 (239)
T d1v43a3         187 KVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSPT  222 (239)
T ss_dssp             TCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            789999999864 56788999999997 9999999764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.69  E-value=0.17  Score=34.36  Aligned_cols=36  Identities=6%  Similarity=0.025  Sum_probs=30.8

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      +.|||++-|.+ .++.++.|++++|.. |+++..|++.
T Consensus       191 g~tvi~vTHd~-~~~~~~~dri~vm~~-G~iv~~g~~~  226 (242)
T d1oxxk2         191 GVTLLVVSHDP-ADIFAIADRVGVLVK-GKLVQVGKPE  226 (242)
T ss_dssp             CCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEEECCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            67999998875 467788999999997 9999999764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=89.29  E-value=0.17  Score=34.30  Aligned_cols=36  Identities=8%  Similarity=0.030  Sum_probs=30.4

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      |.|||++-|... ++..+.|++++|.. |++|..|++.
T Consensus       190 g~tvi~vTHd~~-~~~~~~drv~vm~~-G~iv~~G~~~  225 (240)
T d1g2912         190 GVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSPD  225 (240)
T ss_dssp             TCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred             CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence            789999888754 56778899999997 9999999754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=88.86  E-value=0.22  Score=33.76  Aligned_cols=36  Identities=8%  Similarity=-0.065  Sum_probs=30.6

Q ss_pred             CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141            4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG   41 (98)
Q Consensus         4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~   41 (98)
                      |.|||+..|... ++..+.|++++|.. |+++..|++.
T Consensus       191 g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv~~G~~~  226 (240)
T d3dhwc1         191 GLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTVS  226 (240)
T ss_dssp             CCEEEEEBSCHH-HHHHHCSEEEEEET-TEEEEEEETT
T ss_pred             CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence            679999888764 45678899999997 9999999976