Citrus Sinensis ID: 037149

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQDLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFIQGWVL
Secondary Structure (PSIPRED)
cccccccHHHccccccccccccccccccHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccHHHHHHHHHHcccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRgklyefgsagINKTLERYQrccfnpqdnsierETQSWYQEATKLKAKYESLQRTQRHllgedlgplsVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQDLWNSaaagagnsnfsvhpshdspmncdpepalqigylnylpsegssvpkntvgetnfiqgwvl
Flexible Loop (DISEMBL)
mgrgrvelkrienkinrqvtfskrrngllKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVedlrkkerqlgdINKQLRIKLETEGQSFKAIQDLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEgssvpkntvgetnfiqgwvl
Low Complexity Region (SEG)
MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQDLWnsaaagagnsnFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFIQGWVL
Disordered region (IsUnstruct)
**************INRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQD********SWYQEA***************************************ALAL*******IMI*******************LRIKLE****SFKAIQDLWN****************************LQIGYLNYL***************NFIQGW**
Disordered Region (DISOPRED)
MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQ******************YQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLR*********************************************ALQIG*********************FIQGWVL
Disordered Region (DISEMBL)
MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQDLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFIQGWVL
Disordered Region (DISPRO)
*****VELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQ***************************DSPMNCDPEPALQIGYLNYL**********************L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSxxxxxxxxxxxxxxxxxxxxxxxxIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQDLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFIQGWVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
P29386	252	Agamous-like MADS-box pro	yes	no	0.995	0.964	0.715	6e-95
Q6EU39	250	MADS-box transcription fa	yes	no	0.991	0.968	0.682	5e-91
Q7XUN2	249	MADS-box transcription fa	no	no	0.983	0.963	0.640	9e-82
Q38837	244	Agamous-like MADS-box pro	no	no	0.975	0.975	0.585	6e-72
Q03489	241	Agamous-like MADS-box pro	N/A	no	0.954	0.966	0.532	4e-59
Q39685	233	MADS-box protein CMB1 OS=	N/A	no	0.946	0.991	0.544	7e-58
Q38694	250	Agamous-like MADS-box pro	N/A	no	0.872	0.852	0.565	1e-57
P29384	250	Developmental protein SEP	no	no	0.975	0.952	0.523	2e-57
O65874	247	MADS-box transcription fa	N/A	no	0.963	0.951	0.523	3e-57
O04067	254	Agamous-like MADS-box pro	N/A	no	0.971	0.933	0.513	1e-56

>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2

 Score =  347 bits (889), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 181/253 (71%), Positives = 203/253 (80%), Gaps = 10/253 (3%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVE+KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query: 61  GINKTLERYQRC--CFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLS 118
           GI  T+ERY RC  C +  +N  E  TQSW QE TKLK+KYESL RT R+LLGEDLG + 
Sbjct: 61  GIESTIERYNRCYNC-SLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMG 119

Query: 119 VKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKA 178
           VKELQ LE+QLE AL   RQRKTQ+M+E++EDLRKKERQLGDINKQL+IK ETEG +FK 
Sbjct: 120 VKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHAFKT 179

Query: 179 IQDLW-NSAAAGAG---NSNFSVHPSHDSPMNCDPEPALQIGYLN--YLPSEGSSVPK-N 231
            QDLW NSAA+ AG   NS F V PSH + ++C+ EP LQIG+    Y+  EGSSV K N
Sbjct: 180 FQDLWANSAASVAGDPNNSEFPVEPSHPNVLDCNTEPFLQIGFQQHYYVQGEGSSVSKSN 239

Query: 232 TVGETNFIQGWVL 244
             GETNF+QGWVL
Sbjct: 240 VAGETNFVQGWVL 252

Probable transcription factor. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1

 Score =  333 bits (855), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 172/252 (68%), Positives = 202/252 (80%), Gaps = 10/252 (3%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  GINKTLERYQRCCFNPQD-NSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSV 119
           GI KTLERYQ CC+N QD N+   ETQSWY E +KLKAK+E+LQRTQRHLLGEDLGPLSV
Sbjct: 61  GITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSV 120

Query: 120 KELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQS--FK 177
           KELQ LEKQLE AL+ ARQRKTQ+M+EQVE+LR+KERQLG+IN+QL+ KLE EG +  ++
Sbjct: 121 KELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYR 180

Query: 178 AIQDL-WNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLN-YLPSEGSSVPKNTV-- 233
           A+Q   W   A     + +   P H + M  D EP LQIGY + ++P+E +++ ++T   
Sbjct: 181 AMQQASWAQGAVVENGAAYVQPPPHSAAM--DSEPTLQIGYPHQFVPAEANTIQRSTAPA 238

Query: 234 -GETNFIQGWVL 244
             E NF+ GWVL
Sbjct: 239 GAENNFMLGWVL 250

Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2

 Score =  303 bits (775), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 162/253 (64%), Positives = 186/253 (73%), Gaps = 13/253 (5%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  GINKTLERYQRCCFNPQDNSIER---ETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPL 117
           GINKTLE+Y  CC+N Q ++      E QSWYQE ++LK K E LQR+QRH+LGEDLGPL
Sbjct: 61  GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPL 120

Query: 118 SVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSF- 176
           S+KELQ LEKQLE +L+ ARQRKTQIM+EQV+DLR+KERQLG++NKQL+ KLE E  S  
Sbjct: 121 SIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSN 180

Query: 177 --KAIQDLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGS---SVPKN 231
              AIQD W      +G    +  P    P + D EP LQIGY  ++  E +   S    
Sbjct: 181 CRSAIQDSWVHGTVVSGGRVLNAQP----PPDIDCEPTLQIGYYQFVRPEAANPRSNGGG 236

Query: 232 TVGETNFIQGWVL 244
                NF+ GW L
Sbjct: 237 GDQNNNFVMGWPL 249

Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38837|AGL13_ARATH Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2

 Score =  270 bits (691), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 144/246 (58%), Positives = 184/246 (74%), Gaps = 8/246 (3%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRG+VE+KRIENKI RQVTFSKR++GLLKKAYELSVLCDAEV+LIIFS+ GKLYEF + 
Sbjct: 1   MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNV 60

Query: 61  GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVK 120
           G+ +T+ERY RC  N  DN    +TQ   QE TKLK KYESL RT R+L+GEDL  +S+K
Sbjct: 61  GVGRTIERYYRCKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIK 120

Query: 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQ 180
           ELQ LE+QLEGAL+  R++KTQ+M+EQ+E+LR+KER+LGDIN +L  KLETE   FK  Q
Sbjct: 121 ELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKL--KLETEDHDFKGFQ 178

Query: 181 DLWNSAAAGAG-NSNFSVHPSHDSPM-NCDPEPALQIGY-LNYLPSEGSSVPKNTV---G 234
           DL  +    AG +++FS+  +H + + +C+    LQIG+  +Y   EGSSV K+      
Sbjct: 179 DLLLNPVLTAGCSTDFSLQSTHQNYISDCNLGYFLQIGFQQHYEQGEGSSVTKSNARSDA 238

Query: 235 ETNFIQ 240
           ETNF+Q
Sbjct: 239 ETNFVQ 244

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q03489|AGL9_PETHY Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2

 Score =  227 bits (579), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 133/250 (53%), Positives = 170/250 (68%), Gaps = 17/250 (6%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GS 59
           MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 60  AGINKTLERYQRCCFN-PQDNSIERETQ--SWYQEATKLKAKYESLQRTQRHLLGEDLGP 116
           + + KTLERYQ+C +  P+ N   RE    S  QE  KLKA+YE+LQR+QR+LLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 117 LSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSF 176
           L+ KEL++LE+QL+ +L   R  +TQ+M++Q++DL++KE  L + N+ L+ +L  EG + 
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRL-MEGSTL 179

Query: 177 KAIQDLWNSAAAGAGNSNFSVHPSHDS---PMNCDPEPALQIGYLNYLPSEGSSVPKNTV 233
                 W   A   G    +     D    P+ C  EP LQIGY N   + G + P    
Sbjct: 180 NL---QWQQNAQDVGYGRQATQTQGDGFFHPLEC--EPTLQIGYQNDPITVGGAGP---- 230

Query: 234 GETNFIQGWV 243
              N++ GW+
Sbjct: 231 SVNNYMAGWL 240

Probable transcription factor.

Petunia hybrida (taxid: 4102)

>sp|Q39685|CMB1_DIACA MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1

 Score =  223 bits (569), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 134/246 (54%), Positives = 163/246 (66%), Gaps = 15/246 (6%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALI+FS+RGKLYEF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  G-INKTLERYQRCCFNPQDNS-IERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLS 118
             +NKTLERYQRC +   + S   +ET+S YQE  KLKAK + LQR+ R+LLGEDLG LS
Sbjct: 61  SCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELS 120

Query: 119 VKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKA 178
            KEL+ LE QL+ +L   R  KTQ M++Q+ DL+KKE  L + N+ L+ KLE    SF+ 
Sbjct: 121 TKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEESCASFRP 180

Query: 179 IQDLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNF 238
               W+    G G       P    P+ C+    LQIGY N    +  +   +      F
Sbjct: 181 N---WDVRQPGDG----FFEP---LPLPCNNN--LQIGY-NEATQDQMNATTSAQNVHGF 227

Query: 239 IQGWVL 244
            QGW+L
Sbjct: 228 AQGWML 233

Dianthus caryophyllus (taxid: 3570)

>sp|Q38694|AGL9_ARADE Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1

 Score =  223 bits (567), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/223 (56%), Positives = 158/223 (70%), Gaps = 10/223 (4%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GS 59
           MGRGRVELK IENKINRQVTF+KRR  LLKKAYELSVLCDAEVALIIFS+RGKLYEF  S
Sbjct: 1   MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 60  AGINKTLERYQRCCF-NPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLS 118
             + KTLE+YQ+C F +P+   I RETQS  QE  KLK + E+LQR+QR+LLGEDLGPL 
Sbjct: 61  TSMLKTLEKYQKCNFGSPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLG 120

Query: 119 VKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKA 178
            KEL+ LE+QL+ +L   R  +TQ M++Q+ DL+++E+ L + NK L+ + E   Q+ + 
Sbjct: 121 SKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQ- 179

Query: 179 IQDLW---NSAAAGAGNSNFSVH-PSHDSPMNCDPEPALQIGY 217
            Q +W   N+ A G G      H  +   P+ C  EP LQIGY
Sbjct: 180 -QQVWDPSNTHAVGYGRQPAQHHGEAFYHPLEC--EPTLQIGY 219

Probable transcription factor active in inflorescence development and floral organogenesis.

Aranda deborah (taxid: 29714)

>sp|P29384|SEP2_ARATH Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1

 Score =  222 bits (565), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/256 (52%), Positives = 169/256 (66%), Gaps = 18/256 (7%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS- 59
           MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEV+LI+FS+RGKLYEF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query: 60  AGINKTLERYQRCCFNP--QDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPL 117
           + + KTLERYQ+C +     +N   +E ++ Y+E  KLK +YE+LQR QR+LLGEDLGPL
Sbjct: 61  SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 118 SVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE-GQSF 176
           + KEL+ LE+QL+G+L   R  KTQ M++Q+ DL+ KE  L D N+ L +KLE   G   
Sbjct: 121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRH 180

Query: 177 KAIQDLWNSAAAGAGNSNFSV-HPSHDS-----PMNCDPEPALQIGYLNYLPSE--GSSV 228
             I   W     G    N +  HP   S      + CD  P LQIGY + + SE    +V
Sbjct: 181 HHIGGGWE----GGDQQNIAYGHPQAHSQGLYQSLECD--PTLQIGYSHPVCSEQMAVTV 234

Query: 229 PKNTVGETNFIQGWVL 244
              +     +I GW+L
Sbjct: 235 QGQSQQGNGYIPGWML 250

Probable transcription factor. Functions with SEPALLATA1/AGL2 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|O65874|MTF1_PEA MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1

 Score =  221 bits (564), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 133/254 (52%), Positives = 171/254 (67%), Gaps = 19/254 (7%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS- 59
           MGRGRVELKR+ENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALI+FS+RGKLYEF S 
Sbjct: 1   MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 60  AGINKTLERYQRCCFN-PQDNSIERET----QSWYQEATKLKAKYESLQRTQRHLLGEDL 114
           + + KTLERYQ+C +  P+ N   +E      S  QE  KLKA+YESLQR+QR+L+GEDL
Sbjct: 61  SSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDL 120

Query: 115 GPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQ 174
           GPLS K+L+ LE+QL+ +L   R  +TQ M++Q+ DL++KE  L + N+ LR ++  EG 
Sbjct: 121 GPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRM--EGY 178

Query: 175 SFKAIQDLWNSAAAGAGNSNFSVHPSHDSPMNCDP---EPALQIGYLNYLPSEGSSVPKN 231
              ++Q   ++   G G  +   H   D      P   EP LQIGY    P  GS V   
Sbjct: 179 QINSLQLNLSAEDMGYGR-HHQGHTHGDELFQVQPIECEPTLQIGYHQGDP--GSVV--- 232

Query: 232 TVGET--NFIQGWV 243
           T G +  N++ GW+
Sbjct: 233 TAGPSMNNYMGGWL 246

Probable transcription factor.

Pisum sativum (taxid: 3888)

>sp|O04067|AGL9_SINAL Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1

 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/253 (51%), Positives = 164/253 (64%), Gaps = 16/253 (6%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GS 59
           MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 60  AGINKTLERYQRCCFN-PQDNSIERET----QSWYQEATKLKAKYESLQRTQRHLLGEDL 114
           + + +TLERYQ+C +  P+ N   RE      S  QE  KLK +Y++LQRTQR+LLGEDL
Sbjct: 61  SSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 115 GPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQ 174
           GPLS KEL+ LE+QL+ +L   R  +TQ M++Q+ DL+ KER L + NK LR++L    Q
Sbjct: 121 GPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQ 180

Query: 175 SFKAIQDLWNSAAAGAGNSN----FSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPK 230
               +           G  +     + H +   P+ C  EP LQ+GY         + P 
Sbjct: 181 MPLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLEC--EPILQMGYQGQQDHGMEAGP- 237

Query: 231 NTVGETNFIQGWV 243
               E N++ GW+
Sbjct: 238 ---SENNYMLGWL 247

Probable transcription factor active in inflorescence development and floral organogenesis.

Sinapis alba (taxid: 3728)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
212525794	243	MADS-13 [Gossypium hirsutum]	0.995	1.0	0.831	1e-116
255541402	244	mads box protein, putative [Ricinus comm	0.995	0.995	0.840	1e-115
225453839	244	PREDICTED: MADS-box protein 3 [Vitis vin	1.0	1.0	0.823	1e-115
317106629	244	JHL05D22.6 [Jatropha curcas]	0.995	0.995	0.840	1e-115
187942348	247	MADS3 [Carica papaya]	1.0	0.987	0.838	1e-115
402691611	243	MADS-box protein [Pyrus pyrifolia var. c	0.995	1.0	0.815	1e-114
3646340	243	MADS-box protein [Malus x domestica] gi|	0.995	1.0	0.811	1e-113
326631095	245	MADS-box protein [Hibiscus cannabinus]	1.0	0.995	0.816	1e-110
224127478	246	predicted protein [Populus trichocarpa]	0.995	0.987	0.793	1e-109
388490896	244	unknown [Lotus japonicus]	0.995	0.995	0.751	1e-104

>gi|212525794|gb|ACJ26768.1| MADS-13 [Gossypium hirsutum]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/244 (83%), Positives = 224/244 (91%), Gaps = 1/244 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSS 60

Query: 61  GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVK 120
           G++KTLERYQRCCF PQDNS+ERETQ+WYQE TKLKAKYE+LQRTQRHLLGEDLGPL+VK
Sbjct: 61  GMSKTLERYQRCCFTPQDNSLERETQNWYQEVTKLKAKYEALQRTQRHLLGEDLGPLNVK 120

Query: 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQ 180
           ELQNLEKQLEGALALARQRKTQIMIEQ+EDLRKKER+LGD+NKQL+IKLE EGQ+ K IQ
Sbjct: 121 ELQNLEKQLEGALALARQRKTQIMIEQMEDLRKKERELGDLNKQLKIKLEAEGQNLKTIQ 180

Query: 181 DLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFIQ 240
            LW+S AA A  SNF +HPSH  PM+CD EP LQIGY +++ +EGSSVPK+  GETNFI 
Sbjct: 181 GLWSSGAA-AETSNFPLHPSHPHPMDCDHEPVLQIGYHHFVQAEGSSVPKSMAGETNFIH 239

Query: 241 GWVL 244
           GWV+
Sbjct: 240 GWVI 243

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541402|ref|XP_002511765.1| mads box protein, putative [Ricinus communis] gi|223548945|gb|EEF50434.1| mads box protein, putative [Ricinus communis]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/245 (84%), Positives = 220/245 (89%), Gaps = 2/245 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG+A
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNA 60

Query: 61  GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVK 120
           G  KTLERYQRCCF PQDNSIERETQ+WYQE TKLKAKYESLQRTQRHLLGEDLGPLSVK
Sbjct: 61  GTTKTLERYQRCCFTPQDNSIERETQNWYQEVTKLKAKYESLQRTQRHLLGEDLGPLSVK 120

Query: 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQ 180
           ELQNLEKQLEGALALARQRKTQIMIEQ+EDLRKKER LGD+NKQL+ KLE EGQ+ KAIQ
Sbjct: 121 ELQNLEKQLEGALALARQRKTQIMIEQMEDLRKKERHLGDLNKQLKFKLEAEGQNLKAIQ 180

Query: 181 DLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGY-LNYLPSEGSSVPKNTVGETNFI 239
           DLWNS A   G SNF++HPS  +PM CDP P LQIGY  +Y+ +EGSSV +N   ETNF+
Sbjct: 181 DLWNSGAT-EGTSNFTLHPSQSNPMECDPGPVLQIGYHHHYVQAEGSSVGRNMGSETNFM 239

Query: 240 QGWVL 244
           QGWVL
Sbjct: 240 QGWVL 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453839|ref|XP_002277624.1| PREDICTED: MADS-box protein 3 [Vitis vinifera] gi|20385586|gb|AAM21343.1|AF373602_1 MADS-box protein 3 [Vitis vinifera] gi|296089120|emb|CBI38823.3| unnamed protein product [Vitis vinifera]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/244 (82%), Positives = 221/244 (90%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVK 120
           G  KTLERYQR C+ PQDN++E ETQSWYQE +KLKAKYESLQRTQRHLLGEDLGPLSVK
Sbjct: 61  GTTKTLERYQRVCYTPQDNNMECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSVK 120

Query: 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQ 180
           ELQNLEKQLEGALA ARQRKTQ+MIEQ+EDLR+KERQLGD+NKQL++KLE EGQS KAIQ
Sbjct: 121 ELQNLEKQLEGALAQARQRKTQMMIEQMEDLRRKERQLGDLNKQLKLKLEAEGQSLKAIQ 180

Query: 181 DLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFIQ 240
             WN + A AGNS+F VHPS  +PM+C+PEP LQIGY +Y+P+EG SV K+  GE+NFIQ
Sbjct: 181 GSWNPSTATAGNSSFPVHPSQSNPMDCEPEPILQIGYHHYVPAEGPSVSKSMAGESNFIQ 240

Query: 241 GWVL 244
           GWVL
Sbjct: 241 GWVL 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106629|dbj|BAJ53135.1| JHL05D22.6 [Jatropha curcas]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/245 (84%), Positives = 219/245 (89%), Gaps = 2/245 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVK 120
           G  KTLERYQRCCF PQDNSIERETQSWYQE  KLKAKYESLQRTQRHLLGEDLGPLSVK
Sbjct: 61  GTTKTLERYQRCCFTPQDNSIERETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVK 120

Query: 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQ 180
           ELQNLEKQLEGALALARQRKTQIMIEQ+EDLRKKER LGD+NKQL+ KLE EGQS KAIQ
Sbjct: 121 ELQNLEKQLEGALALARQRKTQIMIEQMEDLRKKERHLGDLNKQLKFKLEAEGQSLKAIQ 180

Query: 181 DLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYL-PSEGSSVPKNTVGETNFI 239
           ++WNS AA  GN NF +H S  +P++CDP P LQIGY +Y+  +EGSSV +  V ETNFI
Sbjct: 181 EIWNSGAAD-GNGNFGLHTSQSNPLDCDPGPVLQIGYRHYVQAAEGSSVGRTMVNETNFI 239

Query: 240 QGWVL 244
           QGWVL
Sbjct: 240 QGWVL 244

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|187942348|gb|ACD39984.1| MADS3 [Carica papaya]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/247 (83%), Positives = 224/247 (90%), Gaps = 3/247 (1%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGST 60

Query: 61  GINKTLERYQRCC-FNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSV 119
           GI KTLERYQRC  FNPQ+NS+ERETQSWYQE  KLKAKYESLQRTQRHLLGEDLGPL++
Sbjct: 61  GIAKTLERYQRCSSFNPQENSLERETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLNI 120

Query: 120 KELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAI 179
           KELQNLEKQLEGALALARQRKTQIMIEQ+EDLRK+ERQLGD+NKQL+IKLE EGQSFKA+
Sbjct: 121 KELQNLEKQLEGALALARQRKTQIMIEQMEDLRKRERQLGDLNKQLKIKLEAEGQSFKAM 180

Query: 180 QDLWNS-AAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPS-EGSSVPKNTVGETN 237
           Q LW+S AAAG   S+F++HPS  +PMNCDPEP LQIGY  Y+ S EG SVPK+   ETN
Sbjct: 181 QGLWSSGAAAGPSTSHFALHPSQSNPMNCDPEPVLQIGYQQYVGSDEGPSVPKSMACETN 240

Query: 238 FIQGWVL 244
           FIQGW+L
Sbjct: 241 FIQGWLL 247

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402691611|dbj|BAK18784.2| MADS-box protein [Pyrus pyrifolia var. culta]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/244 (81%), Positives = 219/244 (89%), Gaps = 1/244 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEV LIIFSSRGKLYEF SA
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSSRGKLYEFASA 60

Query: 61  GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVK 120
           G++KTLERYQRC F P +NSIERETQSWYQE TKLKAKYESLQRTQRHLLGEDLGPLSVK
Sbjct: 61  GMSKTLERYQRCSFTPHENSIERETQSWYQEVTKLKAKYESLQRTQRHLLGEDLGPLSVK 120

Query: 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQ 180
           ELQNLEKQLEGALA  RQRKTQ+MIEQ+EDLRKKER LGD+NKQLR+KLE EGQ+   IQ
Sbjct: 121 ELQNLEKQLEGALAQTRQRKTQLMIEQMEDLRKKERHLGDLNKQLRVKLEEEGQNLNVIQ 180

Query: 181 DLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFIQ 240
           ++W+S AA AG+SNFS+H S  +PM+C PEP +Q+GY  Y P+EGSS+PK+  GETNFIQ
Sbjct: 181 NMWSSDAA-AGSSNFSLHSSQTNPMDCTPEPVMQMGYHQYHPAEGSSIPKSLTGETNFIQ 239

Query: 241 GWVL 244
           GWVL
Sbjct: 240 GWVL 243

Source: Pyrus pyrifolia var. culta

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3646340|emb|CAA04325.1| MADS-box protein [Malus x domestica] gi|302398915|gb|ADL36752.1| MADS domain class transcription factor [Malus x domestica]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/244 (81%), Positives = 219/244 (89%), Gaps = 1/244 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEV LIIFSSRGKLYEF SA
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSSRGKLYEFASA 60

Query: 61  GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVK 120
           G++KTLERYQRC F P +NSIERETQSWYQE TKLKAKYESLQRTQRHLLGEDLGPLSVK
Sbjct: 61  GMSKTLERYQRCSFTPPENSIERETQSWYQEVTKLKAKYESLQRTQRHLLGEDLGPLSVK 120

Query: 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQ 180
           ELQNLEKQLEGALA  RQRKTQ+MIEQ+EDLRKKER LGD+NKQLR+KLE EGQ+   IQ
Sbjct: 121 ELQNLEKQLEGALAQTRQRKTQLMIEQMEDLRKKERHLGDLNKQLRVKLEAEGQNLNVIQ 180

Query: 181 DLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFIQ 240
           ++W+S AA AG+SNFS+H S  +PM+C PEP +Q+GY  Y P+EGSS+P++  GETNFIQ
Sbjct: 181 NMWSSDAA-AGSSNFSLHSSQTNPMDCTPEPVIQMGYHQYHPAEGSSIPRSLTGETNFIQ 239

Query: 241 GWVL 244
           GWVL
Sbjct: 240 GWVL 243

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326631095|gb|ADZ98838.1| MADS-box protein [Hibiscus cannabinus]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/245 (81%), Positives = 223/245 (91%), Gaps = 1/245 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVT SKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS+
Sbjct: 1   MGRGRVELKRIENKINRQVTLSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSS 60

Query: 61  GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVK 120
            ++KTLERYQRCC  PQDNS+ERETQSWYQE TKLKAKYE+LQRTQRHLLGEDLGPL+VK
Sbjct: 61  SMSKTLERYQRCCITPQDNSLERETQSWYQEVTKLKAKYEALQRTQRHLLGEDLGPLNVK 120

Query: 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQ 180
           ELQNLEKQLEGALALARQRKTQIMIEQ+EDLRKKER+LGD+NKQL+IKLETEGQ+ K IQ
Sbjct: 121 ELQNLEKQLEGALALARQRKTQIMIEQMEDLRKKERELGDLNKQLKIKLETEGQNLKTIQ 180

Query: 181 DLW-NSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFI 239
            LW +  AA A +S+F++HPSH  PM+CD EP LQIGY +++ +EGSSVPK+  GETNFI
Sbjct: 181 GLWSSGTAAAAESSSFALHPSHTHPMDCDHEPVLQIGYNHFVQAEGSSVPKSMAGETNFI 240

Query: 240 QGWVL 244
            GWV+
Sbjct: 241 HGWVI 245

Source: Hibiscus cannabinus

Species: Hibiscus cannabinus

Genus: Hibiscus

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127478|ref|XP_002320084.1| predicted protein [Populus trichocarpa] gi|222860857|gb|EEE98399.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/247 (79%), Positives = 217/247 (87%), Gaps = 4/247 (1%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQR-HLLGEDLGPLSV 119
            + KTLERYQRCC+ PQ+NSIERETQSWY EATKLKAKYESLQRTQR HLLGEDLGPL+V
Sbjct: 61  SVTKTLERYQRCCYTPQENSIERETQSWYLEATKLKAKYESLQRTQRLHLLGEDLGPLNV 120

Query: 120 KELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAI 179
           KELQNLEKQLEGALALARQRK Q++ EQ+EDLRKKER LGD+N+ L++KLE EGQ+ KAI
Sbjct: 121 KELQNLEKQLEGALALARQRKQQVLTEQMEDLRKKERHLGDLNRHLKLKLEAEGQNLKAI 180

Query: 180 QDLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSV--PKNTVGETN 237
           QD WNS AA  G+SNF +H +  S M+CDP P LQIGY +Y+P+EGSSV   K+   ETN
Sbjct: 181 QDYWNSGAAD-GSSNFHLHRAQSSQMDCDPGPVLQIGYHHYVPAEGSSVSASKSMPDETN 239

Query: 238 FIQGWVL 244
           F QGW+L
Sbjct: 240 FFQGWIL 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490896|gb|AFK33514.1| unknown [Lotus japonicus]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/245 (75%), Positives = 213/245 (86%), Gaps = 2/245 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           MGRGRVELKRIENKINRQVTFSKRRNGLLKKA ELS+LCDAEVALIIFSSRGKLYEFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKACELSILCDAEVALIIFSSRGKLYEFGSV 60

Query: 61  GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVK 120
           G  KT++RYQRC FNPQD  +  ETQSWYQE +KLKAKYESLQRTQRHLLGEDLGPLSVK
Sbjct: 61  GTAKTIDRYQRCSFNPQDEHVNCETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSVK 120

Query: 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQ 180
           ELQNLEKQLEGALA ARQRKT+IMIEQ+E+LR +ER LGD+NKQL++KLE+EG + K ++
Sbjct: 121 ELQNLEKQLEGALAQARQRKTEIMIEQMEELRARERHLGDLNKQLKLKLESEGYNPKVME 180

Query: 181 DLWNSAAAGAGNSNFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVG-ETNFI 239
           +LW+S +A AG SNF  HP+  +PM+C PEP LQIGY  Y+ +E SS+PKN++  ETNF+
Sbjct: 181 NLWSSTSA-AGTSNFPFHPAQSNPMDCQPEPFLQIGYHQYVQAESSSIPKNSMTCETNFM 239

Query: 240 QGWVL 244
            GW+L
Sbjct: 240 HGWML 244

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
UNIPROTKB|Q6EUV6	247	grcd3 "MADS domain protein" [G	0.979	0.967	0.718	5.1e-90
TAIR|locus:2043600	252	AGL6 "AT2G45650" [Arabidopsis	0.995	0.964	0.683	1.7e-84
UNIPROTKB|Q6EU39	250	MADS6 "MADS-box transcription	0.991	0.968	0.678	5e-83
UNIPROTKB|Q7XUN2	249	MADS17 "MADS-box transcription	0.983	0.963	0.648	9e-77
TAIR|locus:2098826	244	AGL13 "AGAMOUS-like 13" [Arabi	0.975	0.975	0.577	4.1e-65
UNIPROTKB|Q03489	241	FBP2 "Agamous-like MADS-box pr	0.954	0.966	0.528	4.2e-56
UNIPROTKB|D2T2F9	252	grcd5 "GRCD5 protein" [Gerbera	0.959	0.928	0.513	1.6e-54
TAIR|locus:2076522	250	SEP2 "SEPALLATA 2" [Arabidopsi	0.987	0.964	0.513	2.1e-54
UNIPROTKB|O65874	247	MTF1 "MADS-box transcription f	0.963	0.951	0.519	5.5e-54
TAIR|locus:2032372	251	SEP3 "SEPALLATA3" [Arabidopsis	0.959	0.932	0.517	5.5e-54

UNIPROTKB|Q6EUV6 grcd3 "MADS domain protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
 Identities = 181/252 (71%), Positives = 204/252 (80%)

Query:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
             MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEV LIIFSSR KLYEFGS 
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSSRDKLYEFGSV 60

Query:    61 GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVK 120
             G+ KTLERYQRCCFNPQDN+ ERETQSWYQE +KLKAK+ESLQRTQRHLLGEDLGPLSVK
Sbjct:    61 GVMKTLERYQRCCFNPQDNNNERETQSWYQEVSKLKAKFESLQRTQRHLLGEDLGPLSVK 120

Query:   121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL-------ETEG 173
             EL NLEKQLEGAL  ARQRKTQIM+EQ+E+LR+KER+LGD+NK L+IK+       + EG
Sbjct:   121 ELHNLEKQLEGALTQARQRKTQIMVEQMEELRRKERELGDMNKHLKIKVSHELSTFDAEG 180

Query:   174 QSFKA-IQDLWXXXXXXXXXXXFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNT 232
             Q ++A +   W           F++HPS  +PM+C  EP LQIGY  ++  EGSSV +N 
Sbjct:   181 QGYRAQLPCPWNSGTNNT----FTMHPSQSNPMDCQQEPILQIGYNQFMHGEGSSVQRNM 236

Query:   233 VGETNFIQGWVL 244
             VGE N I GWVL
Sbjct:   237 VGE-NGIHGWVL 247

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2043600 AGL6 "AT2G45650" [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 173/253 (68%), Positives = 194/253 (76%)

Query:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
             MGRGRVE+KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 
Sbjct:     1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query:    61 GINKTLERYQRC--CFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLS 118
             GI  T+ERY RC  C +  +N  E  TQSW QE TKLK+KYESL RT R+LLGEDLG + 
Sbjct:    61 GIESTIERYNRCYNC-SLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMG 119

Query:   119 VKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKA 178
             VKELQ LE+QLE AL   RQRKTQ+M+E++EDLRKKERQLGDINKQL+IK ETEG +FK 
Sbjct:   120 VKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHAFKT 179

Query:   179 IQDLWXXXXXXXXX----XXFSVHPSHDSPMNCDPEPALQIGYLN--YLPSEGSSVPK-N 231
              QDLW               F V PSH + ++C+ EP LQIG+    Y+  EGSSV K N
Sbjct:   180 FQDLWANSAASVAGDPNNSEFPVEPSHPNVLDCNTEPFLQIGFQQHYYVQGEGSSVSKSN 239

Query:   232 TVGETNFIQGWVL 244
               GETNF+QGWVL
Sbjct:   240 VAGETNFVQGWVL 252

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0048437 "floral organ development" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q6EU39 MADS6 "MADS-box transcription factor 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 171/252 (67%), Positives = 200/252 (79%)

Query:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
             MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query:    61 GINKTLERYQRCCFNPQD-NSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSV 119
             GI KTLERYQ CC+N QD N+   ETQSWY E +KLKAK+E+LQRTQRHLLGEDLGPLSV
Sbjct:    61 GITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSV 120

Query:   120 KELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQS--FK 177
             KELQ LEKQLE AL+ ARQRKTQ+M+EQVE+LR+KERQLG+IN+QL+ KLE EG +  ++
Sbjct:   121 KELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYR 180

Query:   178 AIQDL-WXXXXXXXXXXXFSVHPSHDSPMNCDPEPALQIGYLN-YLPSEGSSVPKNTV-- 233
             A+Q   W           +   P H + M  D EP LQIGY + ++P+E +++ ++T   
Sbjct:   181 AMQQASWAQGAVVENGAAYVQPPPHSAAM--DSEPTLQIGYPHQFVPAEANTIQRSTAPA 238

Query:   234 -GETNFIQGWVL 244
               E NF+ GWVL
Sbjct:   239 GAENNFMLGWVL 250

GO:0005515 "protein binding" evidence=IPI

GO:0010022 "meristem determinacy" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

UNIPROTKB|Q7XUN2 MADS17 "MADS-box transcription factor 17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 164/253 (64%), Positives = 186/253 (73%)

Query:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
             MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query:    61 GINKTLERYQRCCFNPQ-DNSIER--ETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPL 117
             GINKTLE+Y  CC+N Q  NS     E QSWYQE ++LK K E LQR+QRH+LGEDLGPL
Sbjct:    61 GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPL 120

Query:   118 SVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFK 177
             S+KELQ LEKQLE +L+ ARQRKTQIM+EQV+DLR+KERQLG++NKQL+ KLE E  S  
Sbjct:   121 SIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSN 180

Query:   178 ---AIQDLWXXXXXXXXXXXFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVG 234
                AIQD W            +  P    P + D EP LQIGY  ++  E ++   N  G
Sbjct:   181 CRSAIQDSWVHGTVVSGGRVLNAQP----PPDIDCEPTLQIGYYQFVRPEAANPRSNGGG 236

Query:   235 ---ETNFIQGWVL 244
                  NF+ GW L
Sbjct:   237 GDQNNNFVMGWPL 249

GO:0010093 "specification of floral organ identity" evidence=IMP

TAIR|locus:2098826 AGL13 "AGAMOUS-like 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 142/246 (57%), Positives = 178/246 (72%)

Query:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
             MGRG+VE+KRIENKI RQVTFSKR++GLLKKAYELSVLCDAEV+LIIFS+ GKLYEF + 
Sbjct:     1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNV 60

Query:    61 GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVK 120
             G+ +T+ERY RC  N  DN    +TQ   QE TKLK KYESL RT R+L+GEDL  +S+K
Sbjct:    61 GVGRTIERYYRCKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIK 120

Query:   121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQ 180
             ELQ LE+QLEGAL+  R++KTQ+M+EQ+E+LR+KER+LGDIN +L  KLETE   FK  Q
Sbjct:   121 ELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKL--KLETEDHDFKGFQ 178

Query:   181 DLWXXXXXXXX-XXXFSVHPSHDSPMN-CDPEPALQIGYL-NYLPSEGSSVPKNTV---G 234
             DL             FS+  +H + ++ C+    LQIG+  +Y   EGSSV K+      
Sbjct:   179 DLLLNPVLTAGCSTDFSLQSTHQNYISDCNLGYFLQIGFQQHYEQGEGSSVTKSNARSDA 238

Query:   235 ETNFIQ 240
             ETNF+Q
Sbjct:   239 ETNFVQ 244

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

UNIPROTKB|Q03489 FBP2 "Agamous-like MADS-box protein AGL9 homolog" [Petunia x hybrida (taxid:4102)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 132/250 (52%), Positives = 170/250 (68%)

Query:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GS 59
             MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    60 AGINKTLERYQRCCFN-PQDNSIERETQ--SWYQEATKLKAKYESLQRTQRHLLGEDLGP 116
             + + KTLERYQ+C +  P+ N   RE    S  QE  KLKA+YE+LQR+QR+LLGEDLGP
Sbjct:    61 SSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query:   117 LSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSF 176
             L+ KEL++LE+QL+ +L   R  +TQ+M++Q++DL++KE  L + N+ L+ +L  EG + 
Sbjct:   121 LNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRL-MEGSTL 179

Query:   177 KAIQDLWXXXXXXXXXXXFSVHPSHDS---PMNCDPEPALQIGYLNYLPSEGSSVPKNTV 233
               +Q  W            +     D    P+ C  EP LQIGY N   + G + P    
Sbjct:   180 N-LQ--WQQNAQDVGYGRQATQTQGDGFFHPLEC--EPTLQIGYQNDPITVGGAGPS--- 231

Query:   234 GETNFIQGWV 243
                N++ GW+
Sbjct:   232 -VNNYMAGWL 240

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|D2T2F9 grcd5 "GRCD5 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 133/259 (51%), Positives = 170/259 (65%)

Query:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GS 59
             MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    60 AGINKTLERYQRCCFNPQD--NSIERETQ--SWYQEATKLKAKYESLQRTQRHLLGEDLG 115
             + + KTLERYQ+C +   D  N   RE    S  QE  KLKA+YE+LQR+QR+LLGEDLG
Sbjct:    61 SSMLKTLERYQKCNYGAPDQTNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEDLG 120

Query:   116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQS 175
             PL+ KEL++LE+QL+ +L   R  +TQ+M++ + DL+KKE  L + N+ L+ +L  EG  
Sbjct:   121 PLNCKELESLERQLDTSLKHIRSARTQLMLDTLTDLQKKEHALNEANRTLKQRL-IEGTQ 179

Query:   176 FKAIQDLWXXXXXXXXXXXFSVH-PSHDS------PMNCDPEPALQIGY----LNYLPSE 224
               ++   W              H P H +      P++C P   LQIGY    +N   +E
Sbjct:   180 INSLH--WYPQAPQEVCYDDRQHAPQHQTDEAFFHPLDCGP--TLQIGYQTDPINVAGAE 235

Query:   225 GSSVPKNTVGETNFIQGWV 243
               + P       N++QGW+
Sbjct:   236 AVAGPSMN----NYMQGWL 250

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2076522 SEP2 "SEPALLATA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 130/253 (51%), Positives = 168/253 (66%)

Query:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS- 59
             MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEV+LI+FS+RGKLYEF S 
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query:    60 AGINKTLERYQRCCFNPQD--NSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPL 117
             + + KTLERYQ+C +   +  N   +E ++ Y+E  KLK +YE+LQR QR+LLGEDLGPL
Sbjct:    61 SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query:   118 SVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE-GQSF 176
             + KEL+ LE+QL+G+L   R  KTQ M++Q+ DL+ KE  L D N+ L +KLE   G   
Sbjct:   121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRH 180

Query:   177 KAIQDLWXXXXXXXXXXXFSVHP-SHDSPM--NCDPEPALQIGYLNYLPSEGSSVPKNTV 233
               I   W              HP +H   +  + + +P LQIGY + + SE  +V     
Sbjct:   181 HHIGGGWEGGDQQNIAYG---HPQAHSQGLYQSLECDPTLQIGYSHPVCSEQMAVTVQGQ 237

Query:   234 GE--TNFIQGWVL 244
              +    +I GW+L
Sbjct:   238 SQQGNGYIPGWML 250

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009908 "flower development" evidence=NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O65874 MTF1 "MADS-box transcription factor 1" [Pisum sativum (taxid:3888)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 132/254 (51%), Positives = 167/254 (65%)

Query:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS- 59
             MGRGRVELKR+ENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALI+FS+RGKLYEF S 
Sbjct:     1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query:    60 AGINKTLERYQRCCFN-PQDNSIERETQ----SWYQEATKLKAKYESLQRTQRHLLGEDL 114
             + + KTLERYQ+C +  P+ N   +E      S  QE  KLKA+YESLQR+QR+L+GEDL
Sbjct:    61 SSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDL 120

Query:   115 GPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQ 174
             GPLS K+L+ LE+QL+ +L   R  +TQ M++Q+ DL++KE  L + N+ LR ++E  G 
Sbjct:   121 GPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRME--GY 178

Query:   175 SFKAIQDLWXXXXXXXXXXXFSVHPSHDSPMNCDP---EPALQIGYLNYLPSEGSSVPKN 231
                ++Q L               H   D      P   EP LQIGY    P  GS V   
Sbjct:   179 QINSLQ-LNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDP--GSVV--- 232

Query:   232 TVGET--NFIQGWV 243
             T G +  N++ GW+
Sbjct:   233 TAGPSMNNYMGGWL 246

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0009888 "tissue development" evidence=NAS

TAIR|locus:2032372 SEP3 "SEPALLATA3" [Arabidopsis thaliana (taxid:3702)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 131/253 (51%), Positives = 163/253 (64%)

Query:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GS 59
             MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    60 AGINKTLERYQRCCFN-PQDNSIERETQ----SWYQEATKLKAKYESLQRTQRHLLGEDL 114
             + + +TLERYQ+C +  P+ N   RE      S  QE  KLK +Y++LQRTQR+LLGEDL
Sbjct:    61 SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query:   115 GPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQ 174
             GPLS KEL++LE+QL+ +L   R  +TQ M++Q+ DL+ KER L + NK LR++L  +G 
Sbjct:   121 GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRL-ADGY 179

Query:   175 SFKAIQDLWXXXXXXXXXXXFSVHPSHDS----PMNCDPEPALQIGYLNYLPSEGSSVPK 230
                 +Q                    H      P+ C  EP LQIGY       G+    
Sbjct:   180 QMP-LQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLEC--EPILQIGYQGQQDGMGAGPSV 236

Query:   231 NTVGETNFIQGWV 243
             N     N++ GW+
Sbjct:   237 N-----NYMLGWL 244

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0001708 "cell fate specification" evidence=RCA;IMP

GO:0010093 "specification of floral organ identity" evidence=RCA;IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0048833 "specification of floral organ number" evidence=IMP

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29386	AGL6_ARATH	No assigned EC number	0.7154	0.9959	0.9642	yes	no
Q6EU39	MADS6_ORYSJ	No assigned EC number	0.6825	0.9918	0.968	yes	no
Q03489	AGL9_PETHY	No assigned EC number	0.532	0.9549	0.9668	N/A	no
Q39685	CMB1_DIACA	No assigned EC number	0.5447	0.9467	0.9914	N/A	no
O04067	AGL9_SINAL	No assigned EC number	0.5138	0.9713	0.9330	N/A	no
A2Y9P0	MADS5_ORYSI	No assigned EC number	0.5570	0.8729	0.9466	N/A	no
Q38694	AGL9_ARADE	No assigned EC number	0.5650	0.8729	0.852	N/A	no
O65874	MTF1_PEA	No assigned EC number	0.5236	0.9631	0.9514	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	MADS3	SubName- Full=MADS-box protein 3 (Chromosome chr15 scaffold_37, whole genome shotgun sequence); (244 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037199001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (128 aa)							•		0.483

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	3e-45
pfam01486	100	pfam01486, K-box, K-box region	1e-35
smart00432	59	smart00432, MADS, MADS domain	4e-35
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	3e-33
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	6e-27
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	2e-26
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	9e-09

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  145 bits (369), Expect = 3e-45
 Identities = 55/71 (77%), Positives = 62/71 (87%)

Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61
          GRG++E+KRIEN  NRQVTFSKRRNGLLKKA+ELSVLCDAEVALIIFSS GKLYEF S  
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 62 INKTLERYQRC 72
          + K +ERYQ+ 
Sbjct: 61 MEKIIERYQKT 71

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score =  122 bits (308), Expect = 1e-35
 Identities = 50/89 (56%), Positives = 67/89 (75%)

Query: 82  ERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKT 141
           E + ++  QEA KLK + E+LQR QRHLLGEDLG LS+KELQ LE+QLE  L   R RK 
Sbjct: 11  ESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKN 70

Query: 142 QIMIEQVEDLRKKERQLGDINKQLRIKLE 170
           ++++ Q+E+L+KKER+L + N+ LR KLE
Sbjct: 71  ELLLNQIEELQKKERELQEENRNLRQKLE 99

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  119 bits (300), Expect = 4e-35
 Identities = 47/58 (81%), Positives = 52/58 (89%)

Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 59
          GR ++E+KRIENK NRQVTFSKRRNGL KKA+ELSVLCDAEVALI+FS  GKLYEF S
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  114 bits (288), Expect = 3e-33
 Identities = 46/58 (79%), Positives = 52/58 (89%)

Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 59
          GRG++E+KRIENK +RQVTFSKRRNGL KKA ELSVLCDAEVA+I+FS  GKLYEF S
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 98.9 bits (247), Expect = 6e-27
 Identities = 37/58 (63%), Positives = 44/58 (75%)

Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 59
          GR ++++KRIENK  R VTFSKRR GL KKA ELS LC AEVA+I++S  GKLY F  
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWP 58

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 96.7 bits (241), Expect = 2e-26
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 9  KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 59
          KRIENK NRQVTFSKRRNG+ KKA+ELSVLCDAEVA+IIFSS GKLYE+ S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 54.6 bits (131), Expect = 9e-09
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF 57
           +   ++ +  I NK  R VTFSKR++G+ KKA+ELSVL   EV L++ S  G ++ F
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTF 137

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.98
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.93
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.84
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.77
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.47
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.85
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	88.39
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	88.1
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	86.96
PRK15422	79	septal ring assembly protein ZapB; Provisional	86.94
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	86.85
PRK04098	158	sec-independent translocase; Provisional	85.99
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	85.38
PF14662	193	CCDC155: Coiled-coil region of CCDC155	85.31
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	83.92
PRK13169	110	DNA replication intiation control protein YabA; Re	82.62
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	82.6
PRK10884	206	SH3 domain-containing protein; Provisional	81.55
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	81.2
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	80.3

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=8e-40  Score=275.80  Aligned_cols=162  Identities=48%  Similarity=0.687  Sum_probs=133.0

Q ss_pred             CCccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccc--cchhhhhhhhhcCCCCC
Q 037149            1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG--INKTLERYQRCCFNPQD   78 (244)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~s--m~~ileRY~~~~~~~~~   78 (244)
                      |||+||+|+||+|+++|||||+|||+||||||+|||||||||||||||||+|++|+|++++  |..+++||.........
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999966  99999999987655433


Q ss_pred             C-Cchhhh---------------------HHhHHHHHHHHHHHHHHhh---hhhhhccCCCCCCCH-HHHHHHHHHHHHH
Q 037149           79 N-SIERET---------------------QSWYQEATKLKAKYESLQR---TQRHLLGEDLGPLSV-KELQNLEKQLEGA  132 (244)
Q Consensus        79 ~-~~~~e~---------------------q~l~~E~~kLk~kie~Lq~---~~r~l~GedL~~Ls~-~EL~~LE~~Le~s  132 (244)
                      . ....+.                     +.+..+...++...+.++.   ..+++.|++|.+++. .+|..++.+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            2 111111                     1133444555555555553   378999999999999 9999999999999


Q ss_pred             HHHHHHHHhhhhHHHHH-HHHHHHHHHHHHH
Q 037149          133 LALARQRKTQIMIEQVE-DLRKKERQLGDIN  162 (244)
Q Consensus       133 L~~IR~rK~ql~~e~i~-~Lkkke~~L~eeN  162 (244)
                      +..+|..+...+.+++. .++.++..+.+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKEKSLEAEN  191 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccchhccccC
Confidence            99999999999998887 6666655554443

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.98  E-value=1.2e-33  Score=204.86  Aligned_cols=74  Identities=74%  Similarity=1.090  Sum_probs=71.9

Q ss_pred             CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhhcCC
Q 037149            2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFN   75 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~~~~   75 (244)
                      ||+||+|++|||+.+|++||+||++||||||+||||||||+||||||||+|++|+|+||++.+||+||...+..
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~   74 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGS   74 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999988654

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=2.1e-30  Score=190.50  Aligned_cols=75  Identities=51%  Similarity=0.800  Sum_probs=70.7

Q ss_pred             CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccc-cchhhhhhhhhcCCC
Q 037149            2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG-INKTLERYQRCCFNP   76 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~s-m~~ileRY~~~~~~~   76 (244)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|++|+|++++ +..+|+||...+...
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~   76 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALE   76 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhh
Confidence            899999999999999999999999999999999999999999999999999999998855 999999998876543

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=8.4e-30  Score=174.88  Aligned_cols=59  Identities=80%  Similarity=1.169  Sum_probs=57.8

Q ss_pred             CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeeccc
Q 037149            2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA   60 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~   60 (244)
                      ||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|++|.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999875

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=4.6e-29  Score=171.32  Aligned_cols=59  Identities=78%  Similarity=1.164  Sum_probs=57.5

Q ss_pred             CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeeccc
Q 037149            2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA   60 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~   60 (244)
                      ||+||+|++|+|+..|++||+|||.||+|||+||||||||+||+|||||+|++|+|+++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            89999999999999999999999999999999999999999999999999999999864

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.93  E-value=9.4e-28  Score=159.70  Aligned_cols=51  Identities=69%  Similarity=1.023  Sum_probs=47.2

Q ss_pred             eeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecc
Q 037149            9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS   59 (244)
Q Consensus         9 k~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s   59 (244)
                      |+|+|+..|++||+|||.||||||+|||+||||+||||||||+|++|.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999987

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.84  E-value=1.8e-20  Score=142.50  Aligned_cols=91  Identities=52%  Similarity=0.739  Sum_probs=86.6

Q ss_pred             chhhhHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 037149           81 IERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGD  160 (244)
Q Consensus        81 ~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~e  160 (244)
                      .+...+.|..++.+|+.+++.|+..+|+++|+||++||++||++||++|+.+|.+||+||+++|.++|..|++|++.|.+
T Consensus        10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~   89 (100)
T PF01486_consen   10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE   89 (100)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 037149          161 INKQLRIKLET  171 (244)
Q Consensus       161 eN~~L~~k~~~  171 (244)
                      +|..|+.++.|
T Consensus        90 en~~L~~~~~e  100 (100)
T PF01486_consen   90 ENNQLRQKIEE  100 (100)
T ss_pred             HHHHHHHHhcC
Confidence            99999999865

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.77  E-value=1.1e-19  Score=158.52  Aligned_cols=66  Identities=42%  Similarity=0.761  Sum_probs=63.5

Q ss_pred             CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhh
Q 037149            2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLE   67 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ile   67 (244)
                      ||.||+|++|||+..|.|||||||.|+||||+|||||.+.+|-|+|.|.+|-+|.|+++.++.||.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~  128 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMIT  128 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccccccccc
Confidence            799999999999999999999999999999999999999999999999999999999998877774

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.47  E-value=2.4e-14  Score=130.34  Aligned_cols=67  Identities=37%  Similarity=0.607  Sum_probs=63.6

Q ss_pred             CCccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhh
Q 037149            1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLE   67 (244)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ile   67 (244)
                      |||+|+.|..|+|+..|.|||+||+.|++|||+||+||.+.+|.|+|.|.+|+++.|++|..+.|+.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~  147 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK  147 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence            7899999999999999999999999999999999999999999999999999999999987666653

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.85  E-value=0.37  Score=34.30  Aligned_cols=50  Identities=24%  Similarity=0.397  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149          117 LSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET  171 (244)
Q Consensus       117 Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~  171 (244)
                      +|++.|.+||..+..++..|..     +..++..|+.+-..|.++|..|+.....
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~   50 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQ   50 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            5788999999999999999854     5567788888877777777777766544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=88.39  E-value=9.8  Score=29.94  Aligned_cols=44  Identities=25%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149          127 KQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET  171 (244)
Q Consensus       127 ~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~  171 (244)
                      ..|+.+-..--.+|. .+..++..++++...|.++|+.|..+|+.
T Consensus        87 ~~l~~~e~sw~~qk~-~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   87 AELEESEASWEEQKE-QLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333333334443 45788999999999999999999998864

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=88.10  E-value=0.86  Score=35.01  Aligned_cols=26  Identities=38%  Similarity=0.589  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149          146 EQVEDLRKKERQLGDINKQLRIKLET  171 (244)
Q Consensus       146 e~i~~Lkkke~~L~eeN~~L~~k~~~  171 (244)
                      .++..||+|.+.|+|||+.|+-|++-
T Consensus        72 ~e~~rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          72 REVLRLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567888899999999999998863

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=86.96  E-value=1.1  Score=30.66  Aligned_cols=31  Identities=42%  Similarity=0.508  Sum_probs=25.4

Q ss_pred             hhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 037149          108 HLLGEDLGPLSVKELQNLEKQLEGALALARQ  138 (244)
Q Consensus       108 ~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~  138 (244)
                      +.+|+||+.||++||..--..|+.=+.+++.
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~   42 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEA   42 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999877777776666654

The function of this family is unknown.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=86.94  E-value=8.6  Score=27.77  Aligned_cols=43  Identities=19%  Similarity=0.407  Sum_probs=27.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037149          117 LSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQ  164 (244)
Q Consensus       117 Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~  164 (244)
                      +|++=|.+||..+..++..|-     |+.=+|++||.|-..|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            477788888888888777762     3444556666555555555444

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=86.85  E-value=0.16  Score=28.06  Aligned_cols=15  Identities=27%  Similarity=0.729  Sum_probs=12.0

Q ss_pred             ceeeeeeecCCCcee
Q 037149           42 EVALIIFSSRGKLYE   56 (244)
Q Consensus        42 eValIvfS~~gkl~e   56 (244)
                      |-.+.+|||+|++|.
T Consensus         2 D~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    2 DRSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSSTTSBBTTSSBHH
T ss_pred             CCCceeECCCCeEEe
Confidence            345679999999985

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PRK04098 sec-independent translocase; Provisional

Probab=85.99  E-value=0.3  Score=39.99  Aligned_cols=29  Identities=24%  Similarity=0.273  Sum_probs=18.7

Q ss_pred             ceeeeeeecCCCceeecccccchhhhhhhhh
Q 037149           42 EVALIIFSSRGKLYEFGSAGINKTLERYQRC   72 (244)
Q Consensus        42 eValIvfS~~gkl~ef~s~sm~~ileRY~~~   72 (244)
                      =||||||+| +||+++.- .+-+.+-.+++.
T Consensus        14 vVaLlvfGP-~KLP~~~r-~lGk~ir~~K~~   42 (158)
T PRK04098         14 VVAIIFLGP-DKLPQAMV-DIAKFFKAVKKT   42 (158)
T ss_pred             HHHHhhcCc-hHHHHHHH-HHHHHHHHHHHH
Confidence            589999998 48876542 344555555554

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=85.38  E-value=15  Score=33.48  Aligned_cols=62  Identities=19%  Similarity=0.359  Sum_probs=48.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149          112 EDLGPLSVKELQNLEKQLEGALALARQRKTQI--MIEQVEDLRKKERQLGDINKQLRIKLETEG  173 (244)
Q Consensus       112 edL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql--~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~  173 (244)
                      .+++.++..+|..+-..|...-..|..+|..+  +..++..++.+...+.++-..+...|.+.+
T Consensus       201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999999998877765  556777777777777777777777776543

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=85.31  E-value=22  Score=30.12  Aligned_cols=78  Identities=24%  Similarity=0.346  Sum_probs=52.9

Q ss_pred             HHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 037149           86 QSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQL  165 (244)
Q Consensus        86 q~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L  165 (244)
                      +.+..|..+|+..++.+......+         ..|+..|..++-+.=.-  ..+...+.+++++|+.--..|.|+|+.|
T Consensus        18 ~~L~~en~kL~~~ve~~ee~na~L---------~~e~~~L~~q~~s~Qqa--l~~aK~l~eEledLk~~~~~lEE~~~~L   86 (193)
T PF14662_consen   18 QKLADENAKLQRSVETAEEGNAQL---------AEEITDLRKQLKSLQQA--LQKAKALEEELEDLKTLAKSLEEENRSL   86 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367778888888888777666655         34566666666544322  3344567788888888888888888888


Q ss_pred             HHHHHhccc
Q 037149          166 RIKLETEGQ  174 (244)
Q Consensus       166 ~~k~~~~~~  174 (244)
                      ..+....+.
T Consensus        87 ~aq~rqlEk   95 (193)
T PF14662_consen   87 LAQARQLEK   95 (193)
T ss_pred             HHHHHHHHH
Confidence            777665443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=83.92  E-value=5  Score=36.52  Aligned_cols=78  Identities=18%  Similarity=0.322  Sum_probs=51.3

Q ss_pred             HHHHHHHHhhhhhhhc--cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149           95 LKAKYESLQRTQRHLL--GEDLGPLSVKELQNLEKQLEGALALARQRKTQI--MIEQVEDLRKKERQLGDINKQLRIKLE  170 (244)
Q Consensus        95 Lk~kie~Lq~~~r~l~--GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql--~~e~i~~Lkkke~~L~eeN~~L~~k~~  170 (244)
                      +..+...|+.+..++.  -++++.++.++|..+-..|..-...|...+.++  +.+++..+..+.....+.-..+...|.
T Consensus       177 l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~  256 (312)
T smart00787      177 LRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA  256 (312)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444433332  346788999999999999999999888777765  446666666666666666666666665


Q ss_pred             hc
Q 037149          171 TE  172 (244)
Q Consensus       171 ~~  172 (244)
                      +.
T Consensus       257 ~a  258 (312)
T smart00787      257 EA  258 (312)
T ss_pred             HH
Confidence            53

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=82.62  E-value=10  Score=29.20  Aligned_cols=48  Identities=29%  Similarity=0.328  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149          119 VKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET  171 (244)
Q Consensus       119 ~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~  171 (244)
                      ++.|.+||+++...+..+..-|     .++..|-..-..|.-||..|++.+.+
T Consensus         7 fd~l~~le~~l~~l~~el~~LK-----~~~~el~EEN~~L~iEN~~Lr~~l~~   54 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALK-----KQLAELLEENTALRLENDKLRERLEE   54 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667778888777776665544     33344444455566666666666665

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=82.60  E-value=3  Score=28.36  Aligned_cols=26  Identities=27%  Similarity=0.506  Sum_probs=16.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149          143 IMIEQVEDLRKKERQLGDINKQLRIK  168 (244)
Q Consensus       143 l~~e~i~~Lkkke~~L~eeN~~L~~k  168 (244)
                      .+.++|.+|..+...|+.||..|+..
T Consensus        18 vLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   18 VLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44566666666666666666666553

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=81.55  E-value=25  Score=30.08  Aligned_cols=22  Identities=14%  Similarity=0.191  Sum_probs=12.4

Q ss_pred             HhHHHHHHHHHHHHHHhhhhhh
Q 037149           87 SWYQEATKLKAKYESLQRTQRH  108 (244)
Q Consensus        87 ~l~~E~~kLk~kie~Lq~~~r~  108 (244)
                      .....+.+++.+++.++....+
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~  111 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNN  111 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666554444

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=81.20  E-value=12  Score=28.63  Aligned_cols=48  Identities=31%  Similarity=0.401  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149          119 VKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET  171 (244)
Q Consensus       119 ~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~  171 (244)
                      ++.|.+||++|..-+..|..-|     .++..|-..=..|.-||..|+..+.+
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK-----~~~~~l~EEN~~L~~EN~~Lr~~l~~   54 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELK-----KQLQELLEENARLRIENEHLRERLEE   54 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666665555554332     22233333333444445555555544

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.30  E-value=18  Score=25.57  Aligned_cols=48  Identities=17%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149          117 LSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL  169 (244)
Q Consensus       117 Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~  169 (244)
                      +|++=|..||..+..++.-|     +|+.=+|++||.|-..|..+-..++...
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~r   48 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQR   48 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence            46777888888888877776     3455566666666555555544444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		8e-18
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		9e-18
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		1e-17
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		2e-17
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-16
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		1e-16
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		2e-11
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		3e-10
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		4e-10

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 55/68 (80%)
Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61
          GR ++++ RI ++ NRQVTF+KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 INKTLERY 69
          ++K L +Y
Sbjct: 61 MDKVLLKY 68

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 87.0 bits (214), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 55/68 (80%)
Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61
          GR ++++ RI ++ NRQVTF+KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 INKTLERY 69
          ++K L +Y
Sbjct: 61 MDKVLLKY 68

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 56/69 (81%)
Query: 1  MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
          MGR ++++ RI ++ NRQVTF+KR+ GL+KKAYELSVLCD E+ALIIF+S  +L+++ S 
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 GINKTLERY 69
           +++ L +Y
Sbjct: 61 DMDRVLLKY 69

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 55/68 (80%)
Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61
          GR ++++ RI ++ NRQVTF+KR+ GL+KKAYELSVL DAE+ALIIF+S  KL+++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 62 INKTLERY 69
          ++K L +Y
Sbjct: 61 MDKVLLKY 68

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 55/68 (80%)
Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61
          GR ++++ RI ++ NRQVTF+KR+ GL+KKAYELSVLCD E+ALIIF+S  +L+++ S  
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 62 INKTLERY 69
          +++ L +Y
Sbjct: 61 MDRVLLKY 68

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 55/68 (80%)
Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61
          GR ++++ RI ++ NRQVTF+KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 INKTLERY 69
          ++K L +Y
Sbjct: 61 MDKVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 3  RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGI 62
          R ++E+K IENK  R VTFSKR++G++KKA+ELSVL   +V L++ S  G +Y F +   
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 77
Query: 63 NKTLERYQ-----RCCFNPQDN 79
             + + +     + C N  D+
Sbjct: 78 EPIVTQQEGRNLIQACLNAPDD 99

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 3  RGRVELKR--IENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
          RGRV++K   I+NK+ R  TFSKR+ G++KKAYELS L   +V L++ S  G +Y F + 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68
Query: 61 GI-----NKTLERYQRCCFNPQDN 79
           +     ++T +   + C N  D+
Sbjct: 69 KLQPMITSETGKALIQTCLNSPDS 92

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 3  RGRVELKR--IENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 59
          RGRV++K   I+NK+ R  TFSKR+ G++KKAYELS L   +V L++ S  G +Y F +
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	5e-45
1hbx_A	92	SRF, serum response factor; gene regulation, trans	9e-44
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-43
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	4e-43
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	1e-42

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  145 bits (367), Expect = 5e-45
 Identities = 38/79 (48%), Positives = 57/79 (72%)

Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61
          GR ++++ RI ++ NRQVTF+KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 INKTLERYQRCCFNPQDNS 80
          ++K L +Y       +  +
Sbjct: 61 MDKVLLKYTEYNEPHESRT 79

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  141 bits (358), Expect = 9e-44
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 1  MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           GR +++++ I+NK+ R  TFSKR+ G++KKAYELS L   +V L++ S  G +Y F + 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 GINKTLERYQR-----CCFNPQD 78
           +   +           C N  D
Sbjct: 70 KLQPMITSETGKALIQTCLNSPD 92

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  140 bits (356), Expect = 1e-43
 Identities = 38/71 (53%), Positives = 55/71 (77%)

Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61
          GR ++++ RI ++ NRQVTF+KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 INKTLERYQRC 72
          ++K L +Y   
Sbjct: 61 MDKVLLKYTEY 71

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  140 bits (355), Expect = 4e-43
 Identities = 29/77 (37%), Positives = 45/77 (58%)

Query: 1  MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
            R ++E+K IENK  R VTFSKR++G++KKA+ELSVL   +V L++ S  G +Y F + 
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 GINKTLERYQRCCFNPQ 77
               + + +       
Sbjct: 76 KFEPIVTQQEGRNLIQA 92

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  139 bits (352), Expect = 1e-42
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
            GR +++++ I+NK+ R  TFSKR+ G++KKAYELS L   +V L++ S  G +Y F + 
Sbjct: 9   RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61  GINKTLERYQRC-----CFNPQDNSIERETQS 87
            +   +           C N  D+    +  +
Sbjct: 69  KLQPMITSETGKALIQTCLNSPDSPPRSDPTT 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.36
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	86.25
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	84.24
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	84.1
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	82.67
1j1d_C	133	Troponin I, TNI; THIN filament, muscle regulation,	80.58

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.3e-39  Score=233.94  Aligned_cols=73  Identities=52%  Similarity=0.881  Sum_probs=70.3

Q ss_pred             CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhhcC
Q 037149            2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCF   74 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~~~   74 (244)
                      ||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|+|++|++||+||+.++.
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999998764

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=5.9e-39  Score=236.03  Aligned_cols=76  Identities=50%  Similarity=0.845  Sum_probs=73.1

Q ss_pred             CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhhcCCCC
Q 037149            2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQ   77 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~~~~~~   77 (244)
                      ||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+|++|+|+|++|.+||+||+.++....
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~   76 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHE   76 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999876443

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=1.8e-37  Score=231.90  Aligned_cols=72  Identities=40%  Similarity=0.663  Sum_probs=70.2

Q ss_pred             CCccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhh
Q 037149            1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRC   72 (244)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~   72 (244)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||+|||||||++||+|+|+||+|..||+||...
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~   87 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   87 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999754

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=3.7e-37  Score=227.34  Aligned_cols=70  Identities=37%  Similarity=0.664  Sum_probs=68.7

Q ss_pred             CCccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhh
Q 037149            1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQ   70 (244)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~   70 (244)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||+|||||||++|++|+|+|++|..+|++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999874

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=9.1e-37  Score=229.46  Aligned_cols=78  Identities=37%  Similarity=0.698  Sum_probs=72.2

Q ss_pred             CCccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhh-----hhhhcCC
Q 037149            1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLER-----YQRCCFN   75 (244)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileR-----Y~~~~~~   75 (244)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||+|||||||++|++|+|+|++|..+|++     |.+++..
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~Gk~l~~~c~~   88 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLN   88 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHHHHHHHHHTTC
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhhhhHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998     6666655


Q ss_pred             CCC
Q 037149           76 PQD   78 (244)
Q Consensus        76 ~~~   78 (244)
                      ..+
T Consensus        89 ~~~   91 (103)
T 1k6o_B           89 SPD   91 (103)
T ss_dssp             C--
T ss_pred             CCC
Confidence            443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.36  E-value=1.1  Score=31.50  Aligned_cols=46  Identities=17%  Similarity=0.368  Sum_probs=36.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037149          117 LSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRI  167 (244)
Q Consensus       117 Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~  167 (244)
                      +|++=|.+||..+..++..|     .++.-+|++||.|-..|.++|..++.
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~   48 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH   48 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            68888999999999999888     45566778888777777777777554

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=86.25  E-value=9.8  Score=29.29  Aligned_cols=71  Identities=18%  Similarity=0.178  Sum_probs=43.3

Q ss_pred             HhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 037149           87 SWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLR  166 (244)
Q Consensus        87 ~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~  166 (244)
                      +...|+.+++.+++.|+.....+         -+|+..|-..|...--.+.+     ...++..|+++...|++++..|.
T Consensus        65 NiadEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~e~-----~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           65 NIADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKAES-----SAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888888777776654443         45566665555554444433     23555666666666666666666


Q ss_pred             HHHHh
Q 037149          167 IKLET  171 (244)
Q Consensus       167 ~k~~~  171 (244)
                      .++.+
T Consensus       131 ~~~~~  135 (138)
T 3hnw_A          131 TELND  135 (138)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            65544

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=84.24  E-value=7.2  Score=26.72  Aligned_cols=52  Identities=19%  Similarity=0.282  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149          114 LGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE  172 (244)
Q Consensus       114 L~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~  172 (244)
                      +++++.  +.+|+..|......||.+.     +.|..|.+......++.+.|+.+|...
T Consensus        15 ~~~mgt--i~eLq~~L~~K~eELr~kd-----~~I~eLEk~L~ekd~eI~~LqseLDKf   66 (72)
T 3nmd_A           15 IEGRGS--LRDLQYALQEKIEELRQRD-----ALIDELELELDQKDELIQMLQNELDKY   66 (72)
T ss_dssp             ----CH--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCc--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444  8888888999999998874     557888888888888888999888764

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=84.10  E-value=6.9  Score=25.70  Aligned_cols=53  Identities=25%  Similarity=0.369  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037149          115 GPLSVKELQNLEKQLEGALALARQ--RKTQIMIEQVEDLRKKERQLGDINKQLRI  167 (244)
Q Consensus       115 ~~Ls~~EL~~LE~~Le~sL~~IR~--rK~ql~~e~i~~Lkkke~~L~eeN~~L~~  167 (244)
                      ++.++.|-.++-+.|-.+=.+|-.  +-+.-+.+++.-++++.+.|+.||..|+.
T Consensus         8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A            8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            456778888777777776666632  22334678888899999999999999874

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=82.67  E-value=3.8  Score=24.99  Aligned_cols=27  Identities=22%  Similarity=0.309  Sum_probs=22.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149          144 MIEQVEDLRKKERQLGDINKQLRIKLE  170 (244)
Q Consensus       144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~  170 (244)
                      |.....+|..+...|+.||..||+.+.
T Consensus        15 le~~naeLEervstLq~EN~mLRqvl~   41 (42)
T 2oqq_A           15 LENKNSELEERLSTLQNENQMLRHILK   41 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            455678888889999999999998764

>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2

Probab=80.58  E-value=11  Score=28.93  Aligned_cols=31  Identities=29%  Similarity=0.462  Sum_probs=26.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037149          113 DLGPLSVKELQNLEKQLEGALALARQRKTQI  143 (244)
Q Consensus       113 dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql  143 (244)
                      +|++||.++|+.+=+.|-..+..+-+-|.-+
T Consensus        54 ~id~ls~~~L~e~~keLh~~I~~LEeEKYDl   84 (133)
T 1j1d_C           54 ELAGLGFAELQDLARQLHARVDKVDEERYDI   84 (133)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            7999999999999999999998887766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	2e-38
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-38
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	2e-37

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 2e-38
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 1  MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60
           GR +++++ I+NK+ R  TFSKR+ G++KKAYELS L   +V L++ S  G +Y F + 
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 GINKTLERYQ-----RCCFNPQD 78
           +   +         + C N  D
Sbjct: 62 KLQPMITSETGKALIQTCLNSPD 84

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 2e-38
 Identities = 38/70 (54%), Positives = 55/70 (78%)

Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61
          GR ++++ RI ++ NRQVTF+KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 INKTLERYQR 71
          ++K L +Y  
Sbjct: 61 MDKVLLKYTE 70

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  124 bits (312), Expect = 2e-37
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61
           R ++E+K IENK  R VTFSKR++G++KKA+ELSVL   +V L++ S  G +Y F +  
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 62 INKTLERYQRC-----CFNPQDN 79
              + + +       C N  D+
Sbjct: 63 FEPIVTQQEGRNLIQACLNAPDD 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=223.68  Aligned_cols=71  Identities=54%  Similarity=0.932  Sum_probs=69.7

Q ss_pred             CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhh
Q 037149            2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRC   72 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~   72 (244)
                      ||+||+|++|||+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+||++++||+||.++
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999874

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=218.60  Aligned_cols=72  Identities=36%  Similarity=0.628  Sum_probs=70.1

Q ss_pred             CCccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhh
Q 037149            1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRC   72 (244)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~   72 (244)
                      +||+||+|++|||+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+++.+|+||...
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999999999999999754

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-36  Score=218.08  Aligned_cols=72  Identities=40%  Similarity=0.661  Sum_probs=70.1

Q ss_pred             CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhhc
Q 037149            2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCC   73 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~~   73 (244)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+|..||+||...+
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~~   74 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN   74 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999998753