Citrus Sinensis ID: 037169

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860
Protein Sequence
MAVLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLICNGCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHECASSVPQLNKMVSTIQVLGNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYATAYCFREMPVTTPYNATVSRVETTIDDMDPPSLRILNHNGSNRAMNTESESDLLKGTNSLRELRRKRQTQWRGSENNILLSASFLEKNSLTAESNKPRHQNKQGSGRRRKGEWQQVKDMAKVV
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccccEEEEEEEEEEEcccccccEEEEEEEcccHHHcccccEEEEEcccccEEEEEEEEEEccccEEEEEEccccccccEEEEEEccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHcccccEEEEccccccccccccHHHHcccHHHHHHHHccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEEEEEcccccccccccccccccEEEEcccccEEEcccEEEEcccHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccEEEEEEEccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccHHHHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccHHHHHcccHHHHccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEccEEEEEcccccccEEEEEEEEEEEEcccccccEEEEEEEEccEHHEccEEEEEEcccccEEEEEEEEEEccccEEEEEEEEcccccEEEEEEEEcccccccccccccEEEEcccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccHHHccccEEEEEEEccccHHHHHcccEEEEEEEEcccccccccHHHHHHHcHHHHHHHHcccEEEEEEEccccccHHHHHcEccccccccHHHHHHHHHHHHHccccEEEEEEEEEEEEEcHHHHHHcccccccccEcEEEcccccEEEcccccEEEccHHHHHHHHHHHHHHcccccccHHHHHHHcEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHcHHHHHHHHccccccEEEEEEEEccEHHHHHHHHHHHHHHHcccccEcccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHEHEcccccccccccccccccccccccHHHHHHHHHcccccccccEEEcccHHcccccccccccccccccccccccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mavlyqsarfgnfsyrignlspgdylvdLHFAEIVnangpkgmrvFDVFMQEEKVLLEIDIYSivgankplQVVDVRVSVGMDEVLLIRFdgacgspivngiciknatnvpeslgdhghlicngcgteieitpAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLAREahecassvpqlnKMVSTIQVLGNIRVfcrcrplskeeasaghamvvdfsaakdgelgiltvdvfadasplvtsvlDGYNVCIFaygqtgtgktftmegtqqnrgvnyRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDlldtsptskkLEIRQasegfhhvpglteaKIENIKEVWDVLHigsnaravgsnnvnehssrsHCMLCISVKaknlingectksKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSlatksghipyrnskLTHLLQdslggdsktlmflqispseqdlgeTLSSLNFAsrvrgvelsparkqiDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKehdqsenvTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYATAYcfrempvttpynatvsrvettiddmdppslrilnhngsnramntesesdlLKGTNSLRELRRKRQTqwrgsenniLLSASFleknsltaesnkprhqnkqgsgrrrkgewQQVKDMAKVV
Flexible Loop (DISEMBL)
MAVLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLICNGCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHEcassvpqlnKMVSTIQVLGNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFtmegtqqnrgvnYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQasegfhhvpglteAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRvrgvelsparkqidisklQKVKMMLEKtkqevgskddVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQvsegmkgkeeicsNVQRKVKELENklkehdqsenvtalhHKVRELENRLKARTqefevhsgmlqQKIAELEEKLRKKEEYATAycfrempvttpynATVSRVETtiddmdppsLRILnhngsnramntesesdllkgtnSLRELRRkrqtqwrgsennilLSASFLEKNSltaesnkprhqnkqgsgrrrkgewqqvkdmakvv
Low Complexity Region (SEG)
MAVLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLICNGCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHECASSVPQLNKMVSTIQVLGNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAeleeklrkkeeYATAYCFREMPVTTPYNATVSRVETTIDDMDPPSLRILNHNGSNRAMNTESESDLLKGTNSLRELRRKRQTQWRGSENNILLSASFLEKNSLTAESNKPRHQNKQGSGRRRKGEWQQVKDMAKVV
Disordered region (IsUnstruct)
**VLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLICNGCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHECASSVPQLNKMVSTIQVLGNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLD**************EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGS********RSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERL*********************ALGDVISSLATKSGHIPYRNSKLTHLLQ********TLMFL********************************************************************************************************************************************************************************************EEYATAYCFREMPVTTPYNATVSRVE*****************************************************************************************************
Disordered Region (DISOPRED)
*AVLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGI*******************************************************************************************************************************************************PQLNKMVSTIQVLGNIRVFCRCRP**************DFSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSP***********EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL****CTKSKLWLVDLAGSERLAK***QGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKT*******************************************************************************************************************************************************************************************************************************************************************KDMAKVV
Disordered Region (DISEMBL)
MAVLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLICNGCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHECASSVPQLNKMVSTIQVLGNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYATAYCFREMPVTTPYNATVSRVETTIDDMDPPSLRILNHNGSNRAMNTESESDLLKGTNSLRELRRKRQTQWRGSENNILLSASFLEKNSL*********************************
Disordered Region (DISPRO)
MAVLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLICNGCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHECASSVPQLNKMVSTIQVLGNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSN**NEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAG*******************INRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEE*******************************PPS**************************SLR*LRRKRQTQWRGSENN*LLS******************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLICNGCGTEIEITPAQDKLMRMKSxxxxxxxxxxxxxxxxxxxxxCYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAxxxxxxxxxxxxxxxxxxxxxAHECASSVPQLNKMVSTIQVLGNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLQVSEGxxxxxxxxxxxxxxxxxxxxxxxxxxxxENxxxxxxxxxxxxxxxxxxxxxFEVHxxxxxxxxxxxxxxxxxxxxxxxxYCFREMPVTTPYNATVSRVETTIDDMDPPSLRILNHNGSNRAMNTESESDLLKGTNSLRELRRKRQTQWRGSENNILLSASFLEKNSLTAESNKPRHQNKQGSGRRRKGEWQQVKDMAKVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	860	2.2.26 [Sep-21-2011]
O81635	987	Kinesin-4 OS=Arabidopsis	no	no	0.396	0.345	0.468	3e-87
O35231	824	Kinesin-like protein KIFC	no	no	0.369	0.385	0.483	9e-87
Q9BVG8	833	Kinesin-like protein KIFC	no	no	0.369	0.381	0.483	4e-86
P45962	598	Kinesin-like protein klp-	yes	no	0.405	0.583	0.396	2e-70
P46864	745	Kinesin-2 OS=Arabidopsis	no	no	0.380	0.438	0.426	1e-69
P46867	784	Kinesin-like protein Klp6	yes	no	0.382	0.419	0.421	3e-69
Q9FHN8	1260	Kinesin-like calmodulin-b	no	no	0.379	0.258	0.411	4e-69
Q29DY1	797	Kinesin-like protein Klp6	yes	no	0.382	0.412	0.418	8e-69
F4JGP4	790	Kinesin-5 OS=Arabidopsis	no	no	0.369	0.402	0.414	1e-68
P46875	754	Kinesin-3 OS=Arabidopsis	no	no	0.377	0.431	0.411	3e-68

>sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2

 Score =  323 bits (829), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 179/382 (46%), Positives = 241/382 (63%), Gaps = 41/382 (10%)

Query: 258 KMVSTIQVL-GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV---------- 306
           K+ + +Q L GNIRV+CR RP    + S G       SA +D + G +T+          
Sbjct: 383 KLYNLVQDLKGNIRVYCRVRPFLPGQESGG------LSAVEDIDEGTITIRVPSKYGKAG 436

Query: 307 -----------------DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG----TQ 345
                            +VF+D  PLV SVLDGYNVCIFAYGQTG+GKTFTM G    T+
Sbjct: 437 QKPFMFNKVFGPSATQEEVFSDMQPLVRSVLDGYNVCIFAYGQTGSGKTFTMTGPKELTE 496

Query: 346 QNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASE 405
           ++ GVNYR L  LF ++ +RK+T +Y ISV  LE+YNEQ+RDLL     +K+LEIR  S 
Sbjct: 497 ESLGVNYRALADLFLLSNQRKDTTSYEISVQMLEIYNEQVRDLLAQDGQTKRLEIRNNSH 556

Query: 406 GFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING 465
              +VP  +   + +  +V  ++ +G   RAV S  +N+ SSRSH  + + V+ ++L +G
Sbjct: 557 NGINVPEASLVPVSSTDDVIQLMDLGHMNRAVSSTAMNDRSSRSHSCVTVHVQGRDLTSG 616

Query: 466 ECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
                 + LVDLAGSER+ K+EV G+RLKEAQ+IN+SLSALGDVISSL+ K+ H+PYRNS
Sbjct: 617 SILHGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISSLSQKTSHVPYRNS 676

Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQ 585
           KLT LLQDSLGG +KTLMF+ ISP    LGET+S+L FA RV  VEL  AR   D S+++
Sbjct: 677 KLTQLLQDSLGGSAKTLMFVHISPEPDTLGETISTLKFAERVGSVELGAARVNKDNSEVK 736

Query: 586 KVKMMLEKTKQEV---GSKDDV 604
           ++K  +   K  +   G+ +DV
Sbjct: 737 ELKEQIANLKMALVRKGNGNDV 758

Microtubule-binding motor protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O35231|KIFC3_MOUSE Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4

 Score =  322 bits (825), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 165/341 (48%), Positives = 224/341 (65%), Gaps = 23/341 (6%)

Query: 263 IQVLGNIRVFCRCRPLSKEEASAGHAM-VVDFSAAKDGELGIL----------------- 304
           +++ GNIRV  R RP++KE+     A   V F    D  + +L                 
Sbjct: 438 VRLKGNIRVIARVRPVTKEDGEGPEATNAVTFDPDDDSIIHLLHKGKPVSFELDKVFSPW 497

Query: 305 --TVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIA 362
               DVF +   L+TS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   
Sbjct: 498 ASQQDVFQEVQALITSCIDGFNVCIFAYGQTGAGKTYTMEGTPENPGINQRALQLLFSEV 557

Query: 363 EERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIEN 420
           +E+   + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE ++++
Sbjct: 558 QEKASDWQYNITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQS 616

Query: 421 IKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGS 480
           + ++  V   G N R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGS
Sbjct: 617 VDDINKVFEFGYNNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGS 676

Query: 481 ERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSK 540
           ER+ K+  +G RL+EAQ+INRSLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSK
Sbjct: 677 ERVGKSGAEGNRLREAQHINRSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSK 736

Query: 541 TLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI 581
           TLM +Q+SP E++  ETL SL FA RVR VEL P  ++ ++
Sbjct: 737 TLMVVQVSPVEKNTSETLYSLRFAERVRSVELGPGSRRTEL 777

Minus-end microtubule-dependent motor protein. Involved in apically targeted transport. Required for zonula adherens maintenance.

Mus musculus (taxid: 10090)

>sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4

 Score =  320 bits (819), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 165/341 (48%), Positives = 224/341 (65%), Gaps = 23/341 (6%)

Query: 263 IQVLGNIRVFCRCRPLSKEEASAGHAM-VVDFSAAKDGELGIL----------------- 304
           +++ GNIRV  R RP++KE+     A   V F A  D  + +L                 
Sbjct: 440 VRLKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQ 499

Query: 305 --TVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIA 362
               DVF +   LVTS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   
Sbjct: 500 ASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEV 559

Query: 363 EERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIEN 420
           +E+   + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE ++++
Sbjct: 560 QEKASDWEYTITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQS 618

Query: 421 IKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGS 480
           + ++  V   G   R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGS
Sbjct: 619 VDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGS 678

Query: 481 ERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSK 540
           ER+ K+  +G RL+EAQ+IN+SLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSK
Sbjct: 679 ERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSK 738

Query: 541 TLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI 581
           TLM +Q+SP E++  ETL SL FA RVR VEL P  ++ ++
Sbjct: 739 TLMVVQVSPVEKNTSETLYSLKFAERVRSVELGPGLRRAEL 779

Minus-end microtubule-dependent motor protein. Involved in apically targeted transport (By similarity). Required for zonula adherens maintenance.

Homo sapiens (taxid: 9606)

>sp|P45962|KLP3_CAEEL Kinesin-like protein klp-3 OS=Caenorhabditis elegans GN=klp-3 PE=1 SV=1

 Score =  268 bits (685), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 162/409 (39%), Positives = 231/409 (56%), Gaps = 60/409 (14%)

Query: 183 RMGLDNKCFQNLCLDQALEKQAAKLKDVAS-LYERDKRLWIIAMNELERKILIWKEEHSQ 241
           R+ LD K   N+C+ +      +K  D    L ER K        E+E++    K+ H+Q
Sbjct: 190 RLALDTKDAFNVCMAEMRMMLTSKTTDFFRVLIERYKA-------EMEKR----KQLHNQ 238

Query: 242 LAREAHECASSVPQLNKMVSTIQVLGNIRVFCRCRP-LSKEEASAGHAMVVD-------- 292
           L                    +++ GNIRVF R RP L+ E  +    +V+D        
Sbjct: 239 L--------------------VELNGNIRVFYRIRPQLASETDNQKPVVVIDEMDNGVVH 278

Query: 293 ---------FSAAKDGELGILTVD-----VFADASPLVTSVLDGYNVCIFAYGQTGTGKT 338
                     SA  D    ++  D     +F + SP++TS +DGYNVCIFAYG TG+GKT
Sbjct: 279 VSNTTGTRKTSAGADK---VIPTDFSQDQIFNEVSPIITSCIDGYNVCIFAYGHTGSGKT 335

Query: 339 FTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKL 398
           +TM+G     G+N R +  LF+ A+ER     Y I V+ +E+YNE+IRDLL+TS T+  L
Sbjct: 336 YTMDGPVTMPGINQRAIMQLFETAKERTGDIKYDIKVAMMEIYNEKIRDLLNTSNTN--L 393

Query: 399 EIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVK 458
            IRQ  EG   +PGL E  + + +EV + L  G   +AV +   N  SSRSH ++ + V 
Sbjct: 394 AIRQTEEGRSSIPGLEEVSVNSAEEVTETLARGRKNKAVAATEANIESSRSHVIVRVLVS 453

Query: 459 AKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG 518
           A NLI    T  +L LVDLAGSER+++T   G+ LKEAQ IN+SLS LG+V+ +L     
Sbjct: 454 ATNLITKATTVGRLNLVDLAGSERVSQTNATGQLLKEAQAINKSLSELGNVVLALRQNQK 513

Query: 519 HIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRV 567
           HIP+RN +LT +L+DSL GDSKTL+ + +SP  + L E++SS+NFA ++
Sbjct: 514 HIPFRNCQLTRILEDSLNGDSKTLVIVHLSPDAKSLNESISSVNFAEKI 562

Caenorhabditis elegans (taxid: 6239)

>sp|P46864|ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1

 Score =  265 bits (676), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 155/363 (42%), Positives = 211/363 (58%), Gaps = 36/363 (9%)

Query: 258 KMVSTIQVL-GNIRVFCRCRPLSKEEASAGHAMVVDFSAA-----------KDGELGILT 305
           K+ +TIQ L GNIRVFCR RPL   E S+  A  + +  +           ++G+    T
Sbjct: 376 KLHNTIQELKGNIRVFCRVRPLLSGENSSEEAKTISYPTSLEALGRGIDLLQNGQSHCFT 435

Query: 306 VD-----------VFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQN---RGVN 351
            D           VF + S LV S LDGY VCIFAYGQTG+GKT+TM G   N   +G+ 
Sbjct: 436 FDKVFVPSASQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGNPDEKGLI 495

Query: 352 YRTLELLFKIAEE-RKETFTYSISVSALEVYNEQIRDLLDTSP---------TSKKLEIR 401
            R LE +F+  +  R + + Y + VS LE+YNE IRDLL T+          + +K  I+
Sbjct: 496 PRCLEQIFQTRQSLRSQGWKYELQVSMLEIYNETIRDLLSTNKEAVRADNGVSPQKYAIK 555

Query: 402 QASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKN 461
             + G  HV  LT   + + K+V  +L   +  R+VG   +NE SSRSH +  + +   N
Sbjct: 556 HDASGNTHVVELTVVDVRSSKQVSFLLDHAARNRSVGKTAMNEQSSRSHFVFTLKISGFN 615

Query: 462 LINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIP 521
               +  +  L L+DLAGSERL+K+   G+RLKE Q IN+SLS+LGDVI +LA K  H+P
Sbjct: 616 ESTEQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLGDVIFALAKKEDHVP 675

Query: 522 YRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI 581
           +RNSKLT+LLQ  LGGDSKTLMF+ I+P     GE+L SL FA+RV   E+  A + ++ 
Sbjct: 676 FRNSKLTYLLQPCLGGDSKTLMFVNITPEPSSTGESLCSLRFAARVNACEIGTAHRHVNA 735

Query: 582 SKL 584
             L
Sbjct: 736 RPL 738

Possible role in mitosis.

Arabidopsis thaliana (taxid: 3702)

>sp|P46867|KLP68_DROME Kinesin-like protein Klp68D OS=Drosophila melanogaster GN=Klp68D PE=2 SV=2

 Score =  264 bits (674), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 152/361 (42%), Positives = 217/361 (60%), Gaps = 32/361 (8%)

Query: 269 IRVFCRCRPLSKEEASAGHAMVVDFSAAK---------DG---ELGILTVDVFADAS--- 313
           ++V  RCRP+S  E S     VV+    +         DG   +  + T D   DAS   
Sbjct: 20  VQVVVRCRPMSNRERSERSPEVVNVYPNRGVVELQNVVDGNKEQRKVFTYDAAYDASATQ 79

Query: 314 ---------PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR---GVNYRTLELLFKI 361
                    PLV+SVL+G+N CIFAYGQTGTGKTFTMEG + N    G+  RT E ++ +
Sbjct: 80  TTLYHEVVFPLVSSVLEGFNGCIFAYGQTGTGKTFTMEGVRGNDELMGIIPRTFEQIW-L 138

Query: 362 AEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENI 421
              R E F + + VS LE+Y E++RDLL   P SK LE+R+   G + VP L     +++
Sbjct: 139 HINRTENFQFLVDVSYLEIYMEELRDLL--KPNSKHLEVRERGSGVY-VPNLHAINCKSV 195

Query: 422 KEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSE 481
           +++  V+ +G+  R VG  N+NEHSSRSH +  I ++  +         KL L+DLAGSE
Sbjct: 196 EDMIKVMQVGNKNRTVGFTNMNEHSSRSHAIFMIKIEMCDTETNTIKVGKLNLIDLAGSE 255

Query: 482 RLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKT 541
           R +KT    ERLKEA  IN +LS+LG+VIS+LA  S H+PYR+SKLT LLQDSLGG+SKT
Sbjct: 256 RQSKTGASAERLKEASKINLALSSLGNVISALAESSPHVPYRDSKLTRLLQDSLGGNSKT 315

Query: 542 LMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ-IDISKLQKVKMMLEKTKQEVGS 600
           +M   I PS  +  ETL++L +ASR + ++  P + +    +KL++ +  +E+ K+ +G 
Sbjct: 316 IMIANIGPSNYNYNETLTTLRYASRAKSIQNQPIKNEDPQDAKLKEYQEEIERLKRLIGP 375

Query: 601 K 601
           +
Sbjct: 376 Q 376

Plus-end directed microtubule motor that may be used for anterograde axonal transport and could conceivably move cargos in fly neurons different than those moved by kinesin heavy chain or other plus-end directed motors.

Drosophila melanogaster (taxid: 7227)

>sp|Q9FHN8|KCBP_ARATH Kinesin-like calmodulin-binding protein OS=Arabidopsis thaliana GN=KCBP PE=1 SV=1

 Score =  263 bits (673), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 149/362 (41%), Positives = 217/362 (59%), Gaps = 36/362 (9%)

Query: 267  GNIRVFCRCRPLSKEEASAG--------------------------HAMVVDFSAAKDGE 300
            G IRV+CR RPL+++E+S                            +  V D  A++D  
Sbjct: 887  GKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQD-- 944

Query: 301  LGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK 360
                  D+F D   LV S +DGYNVCIFAYGQTG+GKTFT+ G + N G+  R  + LF 
Sbjct: 945  ------DIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFN 998

Query: 361  IAEERKETFTYSISVSALEVYNEQIRDLL-DTSPTSKKLEIRQASEGFHHVPGLTEAKIE 419
            I +   + F++S+    +E+Y + + DLL   S    KLEI++ S+G   V  +T   I 
Sbjct: 999  ILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPIS 1058

Query: 420  NIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAG 479
             ++E+  +L  GS  R V   N+NE SSRSH +L + +++ +L      + KL  VDLAG
Sbjct: 1059 TLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARGKLSFVDLAG 1118

Query: 480  SERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDS 539
            SER+ K+   G +LKEAQ+IN+SLSALGDVI +L++ + HIPYRN KLT L+ DSLGG++
Sbjct: 1119 SERVKKSGSAGCQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSLGGNA 1178

Query: 540  KTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVG 599
            KTLMF+ +SP+E +L ET +SL +ASRVR +   P+ K I   ++ ++K ++   K++ G
Sbjct: 1179 KTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPS-KHISSKEMVRLKKLVAYWKEQAG 1237

Query: 600  SK 601
             K
Sbjct: 1238 KK 1239

Minus-end microtubule-dependent motor protein involved in the regulation of cell division and trichome morphogenesis. Possesses basal and microtubule-stimulated ATPase activities.

Arabidopsis thaliana (taxid: 3702)

>sp|Q29DY1|KLP68_DROPS Kinesin-like protein Klp68D OS=Drosophila pseudoobscura pseudoobscura GN=Klp68D PE=3 SV=1

 Score =  262 bits (670), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 151/361 (41%), Positives = 214/361 (59%), Gaps = 32/361 (8%)

Query: 269 IRVFCRCRPLSKEEASAGHAMVVDFSA------------AKDGELGILTVDVFADAS--- 313
           ++V  RCRP+S  E S G   VV+               A   +  + T D   DAS   
Sbjct: 20  VQVVVRCRPMSNRERSEGSPEVVNVYPNRGVVELQNVVDANKEQRKVFTYDAAYDASASQ 79

Query: 314 ---------PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR---GVNYRTLELLFKI 361
                    PLV+SVL+G+N CIFAYGQTGTGKTFTMEG + N    G+  RT E ++ +
Sbjct: 80  TTLYHEVVFPLVSSVLEGFNGCIFAYGQTGTGKTFTMEGVRGNDDLMGIIPRTFEQIW-L 138

Query: 362 AEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENI 421
              R E F + + VS LE+Y E++RDLL   P SK LE+R+   G + VP L     +++
Sbjct: 139 HINRTENFQFLVDVSYLEIYMEELRDLL--KPNSKHLEVRERGSGVY-VPNLHAINCKSV 195

Query: 422 KEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSE 481
            ++  V+ +G+  R VG  N+NEHSSRSH +  I ++  +         KL L+DLAGSE
Sbjct: 196 DDMIRVMKVGNKNRTVGFTNMNEHSSRSHAIFMIKIEMCDTETNTIKVGKLNLIDLAGSE 255

Query: 482 RLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKT 541
           R +KT    ERLKEA  IN +LS+LG+VIS+LA  S H+PYR+SKLT LLQDSLGG+SKT
Sbjct: 256 RQSKTGASAERLKEASKINLALSSLGNVISALAESSPHVPYRDSKLTRLLQDSLGGNSKT 315

Query: 542 LMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ-IDISKLQKVKMMLEKTKQEVGS 600
           +M   I PS  +  ETL++L +ASR + ++  P + +    +KL++ +  +E+ K+ +  
Sbjct: 316 IMIANIGPSNYNYNETLTTLRYASRAKSIQNQPIKNEDPQDAKLKEYQEEIERLKRLIAP 375

Query: 601 K 601
           +
Sbjct: 376 Q 376

Plus-end directed microtubule motor that may be used for anterograde axonal transport and could conceivably move cargos in fly neurons different than those moved by kinesin heavy chain or other plus-end directed motors.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|F4JGP4|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1

 Score =  261 bits (668), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/357 (41%), Positives = 206/357 (57%), Gaps = 39/357 (10%)

Query: 261 STIQVLGNIRVFCRCRPLSKEEASAGHAMVVDFSAA-----------KDGELGILTVD-- 307
           + +++ GNIRVFCR RPL  ++     A V+ +  +           + G     T D  
Sbjct: 421 TILELKGNIRVFCRVRPLLPDDGGRQEASVIAYPTSTESLGRGIDVVQSGNKHPFTFDKV 480

Query: 308 ---------VFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TQQNRGVNYRTL 355
                    VF + S LV S LDGY VCIFAYGQTG+GKT+TM G   T + +G+  R+L
Sbjct: 481 FDHGASQEEVFFEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPETPEQKGLIPRSL 540

Query: 356 ELLFKIAEE-RKETFTYSISVSALEVYNEQIRDLL-------------DTSPTSKKLEIR 401
           E +FK ++    + + Y + VS LE+YNE IRDLL             D+S + ++  I 
Sbjct: 541 EQIFKTSQSLSTQGWKYKMQVSMLEIYNESIRDLLSTSRTIAIESVRADSSTSGRQYTIT 600

Query: 402 QASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKN 461
               G  HV  LT   + +I ++  +L   + +R+VG  ++NE SSRSH +  + +   N
Sbjct: 601 HDVNGNTHVSDLTIVDVCSIGQISSLLQQAAQSRSVGKTHMNEQSSRSHFVFTLRISGVN 660

Query: 462 LINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIP 521
               +  +  L L+DLAGSERL+++   G+RLKE Q IN+SLSAL DVI +LA K  H+P
Sbjct: 661 ESTEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSALSDVIFALAKKEDHVP 720

Query: 522 YRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
           +RNSKLT+LLQ  LGGDSKTLMF+ ISP     GE+L SL FA+RV   E+   R+Q
Sbjct: 721 FRNSKLTYLLQPCLGGDSKTLMFVNISPDPSSTGESLCSLRFAARVNACEIGIPRRQ 777

Kinesin that supports microtubule movement in an ATP-dependent manner and that functions as a minus-end directed motor as well as a plus-end tracking protein. During mitosis, is involved in early spindle assembly. Participates in the capture of antiparallel interpolar microtubules and helps in generating force to coalign microtubules.

Arabidopsis thaliana (taxid: 3702)

>sp|P46875|ATK3_ARATH Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1

 Score =  260 bits (665), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 148/360 (41%), Positives = 208/360 (57%), Gaps = 35/360 (9%)

Query: 261 STIQVLGNIRVFCRCRPLSKEEASAGHAMVVDFSAA-----------KDGELGILTVD-- 307
           + +++ GNIRVFCR RPL   E +      + +  +           ++ +    T D  
Sbjct: 389 TILELKGNIRVFCRVRPLLPGENNGDEGKTISYPTSLEALGRGIDLMQNAQKHAFTFDKV 448

Query: 308 ---------VFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQN---RGVNYRTL 355
                    VF + S LV S LDGY VCIFAYGQTG+GKT+TM G   N   +G+  R L
Sbjct: 449 FAPTASQEDVFTEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGNVEEKGLIPRCL 508

Query: 356 ELLFKIAEE-RKETFTYSISVSALEVYNEQIRDLL---------DTSPTSKKLEIRQASE 405
           E +F+  +  R + + Y + VS LE+YNE IRDLL         D+  + +K  I+  + 
Sbjct: 509 EQIFETRQSLRSQGWKYELQVSMLEIYNETIRDLLSTNKEAVRTDSGVSPQKHAIKHDAS 568

Query: 406 GFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING 465
           G  HV  LT   +++ +EV  +L   +  R+VG   +NE SSRSH +  + +   N    
Sbjct: 569 GNTHVAELTILDVKSSREVSFLLDHAARNRSVGKTQMNEQSSRSHFVFTLRISGVNESTE 628

Query: 466 ECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
           +  +  L L+DLAGSERL+K+   G+RLKE Q IN+SLS+LGDVI +LA K  H+P+RNS
Sbjct: 629 QQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLGDVIFALAKKEDHVPFRNS 688

Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQ 585
           KLT+LLQ  LGGD+KTLMF+ I+P     GE+L SL FA+RV   E+   R+Q +I  L+
Sbjct: 689 KLTYLLQPCLGGDAKTLMFVNIAPESSSTGESLCSLRFAARVNACEIGTPRRQTNIKPLE 748

Possible role in mitosis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	860
359492966	1014	PREDICTED: uncharacterized protein LOC10	0.959	0.813	0.652	0.0
255572862	1031	ATP binding protein, putative [Ricinus c	0.961	0.802	0.627	0.0
359495850	1071	PREDICTED: uncharacterized protein LOC10	0.961	0.772	0.603	0.0
296090514	979	unnamed protein product [Vitis vinifera]	0.959	0.842	0.598	0.0
224067114	1046	predicted protein [Populus trichocarpa]	0.945	0.777	0.588	0.0
255583233	1074	ATP binding protein, putative [Ricinus c	0.85	0.680	0.656	0.0
302142089	931	unnamed protein product [Vitis vinifera]	0.895	0.827	0.633	0.0
147802316	1233	hypothetical protein VITISV_000434 [Viti	0.952	0.664	0.584	0.0
147777244	958	hypothetical protein VITISV_019022 [Viti	0.917	0.823	0.606	0.0
356529697	1066	PREDICTED: uncharacterized protein LOC10	0.962	0.776	0.563	0.0

>gi|359492966|ref|XP_002283715.2| PREDICTED: uncharacterized protein LOC100250527 [Vitis vinifera]

 Score = 1148 bits (2970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/901 (65%), Positives = 680/901 (75%), Gaps = 76/901 (8%)

Query: 4   LYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYS 63
           +YQSARFGNF Y+  NLSPGDY VDLHFAEIVN NGPKGMRVFDVF+QEEKVL E+DIYS
Sbjct: 73  IYQSARFGNFCYQFENLSPGDYFVDLHFAEIVNTNGPKGMRVFDVFIQEEKVLSELDIYS 132

Query: 64  IVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLICN 123
           IV ANKPLQ+VDVRVSV  D ++ + F+G  GSP++NGICI+ A  +  S   HG + CN
Sbjct: 133 IVRANKPLQLVDVRVSVTKDGMITVSFEGVHGSPVINGICIRRAPPLAASEVKHGSIACN 192

Query: 124 GCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVR 183
            C  EIE++ AQ KL+RMK  AK EK+I+EL  QCQLK+DECYEAWMSLTAAN QLE VR
Sbjct: 193 NCAAEIELSSAQSKLIRMKFAAKYEKKIEELSGQCQLKSDECYEAWMSLTAANKQLEDVR 252

Query: 184 MGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLA 243
             LD + FQN   DQA+EKQA KL+D +++YE DK+ W+ ++NELE KI   K EHSQL+
Sbjct: 253 AELDKRIFQNYYQDQAMEKQAEKLRDASNMYEHDKKFWVASINELESKIKNMKREHSQLS 312

Query: 244 REAHECASSVPQLNKMVSTIQVL-----------------------------GNIRVFCR 274
            EAH+ A+S+P LNKM+  +Q +                             GNIRVFCR
Sbjct: 313 CEAHKSANSIPDLNKMIIAVQAIVAECDDLKLKYSEEQEKRKKLYNQIQEAKGNIRVFCR 372

Query: 275 CRPLSKEEASAGHAMVVDFSAAKDGELGILT--------------------VDVFADASP 314
           CRPLSKEE ++GHA +VDF+AAKDGEL +LT                    VD+ ADASP
Sbjct: 373 CRPLSKEEVASGHATIVDFTAAKDGELAMLTGGSTKKIFKFDRVYTPNDDQVDISADASP 432

Query: 315 LVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSIS 374
           +V SVLDGYNVCIFAYGQTGTGKTFTMEGT +NRGVNYRTLE LFKIAEERKE F Y+IS
Sbjct: 433 MVISVLDGYNVCIFAYGQTGTGKTFTMEGTNKNRGVNYRTLEQLFKIAEERKEIFKYTIS 492

Query: 375 VSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNA 434
           VS LEVYNEQIRDLL TSPTSKKLEIRQA+EG HHVPG+ EAK+ENIKEVWDVL  GSN 
Sbjct: 493 VSVLEVYNEQIRDLLATSPTSKKLEIRQATEGVHHVPGIVEAKVENIKEVWDVLQAGSNG 552

Query: 435 RAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLK 494
           RAVGSNNVNEHSSRSHCMLCI V+AKNL+NGECT SKLWLVDLAGSERLAKTEVQGERLK
Sbjct: 553 RAVGSNNVNEHSSRSHCMLCIMVRAKNLMNGECTNSKLWLVDLAGSERLAKTEVQGERLK 612

Query: 495 EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDL 554
           EAQNINRSLSALGDVIS+LATKS H+PYRNSKLTHLLQDSLGGDSKTLMF+QISPSEQDL
Sbjct: 613 EAQNINRSLSALGDVISALATKSSHVPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDL 672

Query: 555 GETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQN 614
           GETLSSLNFA+RVRGVEL PA+KQID+ +LQ++KMML++ KQE  SKD+ ++KLEENFQN
Sbjct: 673 GETLSSLNFATRVRGVELGPAKKQIDMGELQRMKMMLDRVKQESNSKDEALRKLEENFQN 732

Query: 615 LEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRK 674
           LE KAK   Q+ +NQ+EK+NELE QLESKT+ CRQLEKQLLQ+SE +K KEEI   +Q+K
Sbjct: 733 LEGKAKSRDQIYRNQKEKVNELELQLESKTESCRQLEKQLLQLSEEVKKKEEIGLTLQQK 792

Query: 675 VKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKE 734
           VKELENK+KEH+  E+ T   HKV+ELEN+LK RTQ+FE+H+ +L+QKI ELE KL  + 
Sbjct: 793 VKELENKVKEHELEESKT---HKVKELENKLKERTQDFELHTSILKQKIKELESKLVMQG 849

Query: 735 EYATAYCFR------------------EMPVTTPYNATVSRVETTIDDMDPPSLRILNHN 776
           E                          E P  TP          T+   DP SLR L  N
Sbjct: 850 ESLGFQSLEKKNKGLEEKLRQPTPGSAERPRVTPNEQKAWSRTGTMCGTDPQSLRSL--N 907

Query: 777 GSNRAMNTESESDLLKGTNSLRELRRKRQTQWRGSENNILLSASFLE-KNSLTAESNKPR 835
            SN AM   S+S LLKG +SLRELRRKR+ Q +G ENN LLSAS +E K +L  ESNK R
Sbjct: 908 SSNGAM---SQSGLLKGADSLRELRRKRELQSKGIENNFLLSASLIEHKTTLQKESNKGR 964

Query: 836 H 836
           H
Sbjct: 965 H 965

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572862|ref|XP_002527363.1| ATP binding protein, putative [Ricinus communis] gi|223533282|gb|EEF35035.1| ATP binding protein, putative [Ricinus communis]

 Score = 1111 bits (2874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/910 (62%), Positives = 675/910 (74%), Gaps = 83/910 (9%)

Query: 1   MAVLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEID 60
           + ++YQSARFG+F Y+  +L  GDY VDLHFAEIVN NGPKGMRVFDVF+QEEKV+ E+D
Sbjct: 80  LPIIYQSARFGSFCYQFTSLPTGDYFVDLHFAEIVNTNGPKGMRVFDVFIQEEKVISELD 139

Query: 61  IYSIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHL 120
           IYSIVGANKPLQV++V VSVG D  +LIRF+G  GSPIV+GICIK A   P     H H+
Sbjct: 140 IYSIVGANKPLQVLNVLVSVGEDREILIRFEGILGSPIVSGICIKQAPEFPSFEEKHEHI 199

Query: 121 ICNGCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLE 180
           IC+ C TEI+I+ +Q K+   K ++K EK+I+EL   CQ+K DECYEAWMSLTAA+ QLE
Sbjct: 200 ICDNCATEIKISQSQKKVATAKCISKYEKKIEELNALCQVKADECYEAWMSLTAASQQLE 259

Query: 181 KVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHS 240
           K RM +DN+ FQN+CLDQAL+KQ+A+L D++  Y+ DK  W  A+ +LE+++ + K E S
Sbjct: 260 KARMEVDNRFFQNMCLDQALKKQSAELSDISGRYKCDKLSWFAAIEKLEKQVQMMKIEQS 319

Query: 241 QLAREAHECASSVPQLNKMVSTIQVL-----------------------------GNIRV 271
           QL+ EAHECA+S+  LNKM+ ++Q L                             GNIRV
Sbjct: 320 QLSHEAHECATSISDLNKMIFSVQALVDQYDDLKLKFNKEQAERKKLFNQVQEAKGNIRV 379

Query: 272 FCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVD----------VFAD---------- 311
           FCRCRPLS EE SAG+  VVDF AAK G+LG++             VF            
Sbjct: 380 FCRCRPLSMEETSAGYQTVVDFDAAKHGDLGVVMSSSTKKTFKFDRVFTPRDDQVDVFVD 439

Query: 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTY 371
            SP+V SVLDGYNVCIFAYGQTGTGKTFTMEGT+ NRGVNY+TL+ LF+IA ERKET  Y
Sbjct: 440 VSPMVISVLDGYNVCIFAYGQTGTGKTFTMEGTEGNRGVNYQTLQTLFRIAGERKETVKY 499

Query: 372 SISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIG 431
            ISVS LEVYNEQIRDLL TSPT+K+LEI+Q SEG HHVPGL EAK+ENIKEVWDVL  G
Sbjct: 500 DISVSVLEVYNEQIRDLLATSPTAKRLEIKQFSEGVHHVPGLVEAKVENIKEVWDVLQAG 559

Query: 432 SNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGE 491
           SNARAVGSNNVNEHSSRSHCMLC  V+AK+LINGECTKSKLWLVDLAGSERLAKTEVQGE
Sbjct: 560 SNARAVGSNNVNEHSSRSHCMLCTMVRAKSLINGECTKSKLWLVDLAGSERLAKTEVQGE 619

Query: 492 RLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSE 551
           RLKEAQNINRSLSALGDVIS+LATKS HIPYRNSKLTHLLQDSLGGDSKT+MF+QISPSE
Sbjct: 620 RLKEAQNINRSLSALGDVISALATKSSHIPYRNSKLTHLLQDSLGGDSKTMMFVQISPSE 679

Query: 552 QDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEEN 611
           +DLGETLSSLNFA+RVRGVEL PA+KQID+ +LQK+KMML+K KQE+ SKDDV+ KLEEN
Sbjct: 680 RDLGETLSSLNFATRVRGVELGPAKKQIDLVELQKLKMMLDKAKQELRSKDDVMYKLEEN 739

Query: 612 FQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNV 671
           FQNLE KAK   QLCKNQQEK NELE QL  KT+LC +LE QLLQ+S+GMKGKEEIC+N 
Sbjct: 740 FQNLEGKAKSKDQLCKNQQEKTNELERQLAMKTELCGKLENQLLQLSQGMKGKEEICTNF 799

Query: 672 QRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLR 731
           Q+KVKELENKLKE +Q+E+V  L +KV ELENR+K R QEFE+HS MLQQKI ELE KL 
Sbjct: 800 QQKVKELENKLKEREQAESVN-LQYKVNELENRMKERAQEFEIHSKMLQQKIRELENKLT 858

Query: 732 KKEEYATAYCFR-------------------------EMPVTTPYNATVSRVETTIDDMD 766
            + +Y+     +                         E    TP   T SR    + D+D
Sbjct: 859 MERDYSDPRLLQQKIKVLEEKLREHEQGECISKLWSAEKLGATPIQTTSSR----LGDVD 914

Query: 767 PPSLRILNHNGSNRAMNTESESDLLKGTNSLRELRRKRQTQWRGSENNILLSASFLEKNS 826
             + R L  + SNR+MN    S LLKG +SLRE+RRKR    +G+ENN LL+ S LEK +
Sbjct: 915 SSNRRSL--SASNRSMN--QGSLLLKGPDSLREVRRKRDIPSKGTENNFLLATSLLEKKT 970

Query: 827 LTAESNKPRH 836
            + + +K RH
Sbjct: 971 SSPQISKLRH 980

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495850|ref|XP_002266404.2| PREDICTED: uncharacterized protein LOC100249019 [Vitis vinifera]

 Score = 1067 bits (2760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/910 (60%), Positives = 664/910 (72%), Gaps = 83/910 (9%)

Query: 3    VLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIY 62
            ++YQSAR GNFSYR  NL PGDY VDLHF EI+N +GPKGMRVF+VF+QEEKVL + DI+
Sbjct: 122  LIYQSARLGNFSYRFENLHPGDYFVDLHFVEIINTDGPKGMRVFNVFVQEEKVLSDFDIF 181

Query: 63   SIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLIC 122
            SIVGANKP+Q+VD+RV V  D +++IRF+G  GSP+V+GICI+ A  +        +LIC
Sbjct: 182  SIVGANKPVQLVDLRVPVKEDGLIVIRFEGVNGSPMVSGICIRKAPMLSVPPASPEYLIC 241

Query: 123  NGCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKV 182
            N C  EIE++P Q KL + K   K EK+I+EL +QCQ KTDECYEAWMSLTAAN+QLEKV
Sbjct: 242  NHCSAEIEVSPIQKKLKQTKFTVKYEKKIEELTMQCQRKTDECYEAWMSLTAANEQLEKV 301

Query: 183  RMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQL 242
            RM LDNK FQ   LDQ +EKQA KL+ ++S YE DK++W+ A+N+L+ KI + K+EHSQL
Sbjct: 302  RMELDNKLFQTYSLDQTVEKQAEKLRHISSKYEHDKKVWVAALNDLDDKIKMMKQEHSQL 361

Query: 243  AREAHECASSVPQLNKMVSTIQVL-----------------------------GNIRVFC 273
            +REAHECA S+P+LN+MV  +Q L                             GNIRVFC
Sbjct: 362  SREAHECADSIPELNQMVVAVQALVAQCEDFKMKYIEEQTKRKKLYNQVQEAKGNIRVFC 421

Query: 274  RCRPLSKEEASAGHAMVVDFSAAKDGELGILT--------------------VDVFADAS 313
            RCRP  KEE SAG A VVD   AKDG+LGILT                    VDVFADAS
Sbjct: 422  RCRPFRKEELSAGSATVVDLDGAKDGDLGILTGGSTRKNFKFDRVYTPKDDQVDVFADAS 481

Query: 314  PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSI 373
            P+V SVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLE LFK+AEER +TFTYS+
Sbjct: 482  PMVISVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEELFKVAEERSDTFTYSL 541

Query: 374  SVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSN 433
            SVS LEVYNEQIRDLL TSP SKKLEI+Q+SEGFHHVPG+ EAK+ENIKEVW VL  GSN
Sbjct: 542  SVSVLEVYNEQIRDLLATSPASKKLEIKQSSEGFHHVPGIVEAKVENIKEVWKVLQAGSN 601

Query: 434  ARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERL 493
            ARAVGSNNVNEHSSRSHCMLCI VKAKNL+NG+CTKSKLWLVDLAGSERLAKT+VQGERL
Sbjct: 602  ARAVGSNNVNEHSSRSHCMLCIMVKAKNLMNGDCTKSKLWLVDLAGSERLAKTDVQGERL 661

Query: 494  KEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQD 553
            KEAQNINRSLSALGDVIS+LATKS H+PYRNSKLTHLLQDSLGGDSKTLMF+QISPSE D
Sbjct: 662  KEAQNINRSLSALGDVISALATKSSHVPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEHD 721

Query: 554  LGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQ 613
            LGETLSSLNFASRVRGVEL PA++QID  +LQK+K ML+K +QE  SKD+ ++KLEE+ Q
Sbjct: 722  LGETLSSLNFASRVRGVELGPAKRQIDTGELQKMKTMLDKARQESRSKDESLRKLEESLQ 781

Query: 614  NLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQR 673
            +LE KA+G  Q+ K QQEKI ELE QLE KT L  Q EKQ+ Q+SE +KG+EE+CS++Q 
Sbjct: 782  HLEGKARGKDQIYKTQQEKIKELEGQLELKTSLHGQSEKQISQLSERLKGREEVCSSLQH 841

Query: 674  KVKELENKLKEH-----------------------DQ---SENVTALHHKVRELENRLKA 707
            KVK+LE+KLKE                        DQ   SE  ++L  KV ELE +L+ 
Sbjct: 842  KVKDLESKLKEQVKESESHSFILQQKIKELDRKLKDQEQSSEAASSLQQKVNELERKLRE 901

Query: 708  RTQEFEVHSGMLQQKIAELEEKLRKKEEYATAYCFRE---MPVTTPYNATVSRVETTIDD 764
            + +  EV + +L  KI ELEEKLR++E+ +    +++   +   TP        +  + D
Sbjct: 902  QEESSEV-AALLHLKIKELEEKLREQEQQSECLTYQDCASVSRVTPIEVKPRVRDEFMSD 960

Query: 765  MDPPSLRILNHNGSNRAMNTESESDLLKGTNSLRELRRKRQTQWRGSENNILLSASFLEK 824
            ++P  LR  N N  NR M+    S  L+GT+SL + R++R+ +    ENN ++S S  + 
Sbjct: 961  VEPNILR--NSNTMNRPMS--QGSTFLRGTDSLSDKRKRREFRSTEMENNTIVSNSSNDN 1016

Query: 825  NSLTAESNKP 834
             +  ++  KP
Sbjct: 1017 RTRQSDPPKP 1026

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090514|emb|CBI40845.3| unnamed protein product [Vitis vinifera]

 Score = 1055 bits (2728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/913 (59%), Positives = 660/913 (72%), Gaps = 88/913 (9%)

Query: 3   VLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIY 62
           ++YQSAR GNFSYR  NL PGDY VDLHF EI+N +GPKGMRVF+VF+QEEK     DI+
Sbjct: 29  LIYQSARLGNFSYRFENLHPGDYFVDLHFVEIINTDGPKGMRVFNVFVQEEKA--NFDIF 86

Query: 63  SIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLIC 122
           SIVGANKP+Q+VD+RV V  D +++IRF+G  GSP+V+GICI+ A  +        +LIC
Sbjct: 87  SIVGANKPVQLVDLRVPVKEDGLIVIRFEGVNGSPMVSGICIRKAPMLSVPPASPEYLIC 146

Query: 123 NGCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKV 182
           N C  EIE++P Q KL + K   K EK+I+EL +QCQ KTDECYEAWMSLTAAN+QLEKV
Sbjct: 147 NHCSAEIEVSPIQKKLKQTKFTVKYEKKIEELTMQCQRKTDECYEAWMSLTAANEQLEKV 206

Query: 183 RMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQL 242
           RM LDNK FQ   LDQ +EKQA KL+ ++S YE DK++W+ A+N+L+ KI + K+EHSQL
Sbjct: 207 RMELDNKLFQTYSLDQTVEKQAEKLRHISSKYEHDKKVWVAALNDLDDKIKMMKQEHSQL 266

Query: 243 AREAHECASSVPQLNKMVSTIQVL--------------------------------GNIR 270
           +REAHECA S+P+LN+MV  +Q L                                 NIR
Sbjct: 267 SREAHECADSIPELNQMVVAVQALVAQCEDFKMKYIEEQTKRKKLYNQVQEAKGMFCNIR 326

Query: 271 VFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILT--------------------VDVFA 310
           VFCRCRP  KEE SAG A VVD   AKDG+LGILT                    VDVFA
Sbjct: 327 VFCRCRPFRKEELSAGSATVVDLDGAKDGDLGILTGGSTRKNFKFDRVYTPKDDQVDVFA 386

Query: 311 DASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFT 370
           DASP+V SVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLE LFK+AEER +TFT
Sbjct: 387 DASPMVISVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEELFKVAEERSDTFT 446

Query: 371 YSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHI 430
           YS+SVS LEVYNEQIRDLL TSP SKKLEI+Q+SEGFHHVPG+ EAK+ENIKEVW VL  
Sbjct: 447 YSLSVSVLEVYNEQIRDLLATSPASKKLEIKQSSEGFHHVPGIVEAKVENIKEVWKVLQA 506

Query: 431 GSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQG 490
           GSNARAVGSNNVNEHSSRSHCMLCI VKAKNL+NG+CTKSKLWLVDLAGSERLAKT+VQG
Sbjct: 507 GSNARAVGSNNVNEHSSRSHCMLCIMVKAKNLMNGDCTKSKLWLVDLAGSERLAKTDVQG 566

Query: 491 ERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPS 550
           ERLKEAQNINRSLSALGDVIS+LATKS H+PYRNSKLTHLLQDSLGGDSKTLMF+QISPS
Sbjct: 567 ERLKEAQNINRSLSALGDVISALATKSSHVPYRNSKLTHLLQDSLGGDSKTLMFVQISPS 626

Query: 551 EQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEE 610
           E DLGETLSSLNFASRVRGVEL PA++QID  +LQK+K ML+K +QE  SKD+ ++KLEE
Sbjct: 627 EHDLGETLSSLNFASRVRGVELGPAKRQIDTGELQKMKTMLDKARQESRSKDESLRKLEE 686

Query: 611 NFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSN 670
           + Q+LE KA+G  Q+ K QQEKI ELE QLE KT L  Q EKQ+ Q+SE +KG+EE+CS+
Sbjct: 687 SLQHLEGKARGKDQIYKTQQEKIKELEGQLELKTSLHGQSEKQISQLSERLKGREEVCSS 746

Query: 671 VQRKVKELENKLKEH-----------------------DQ---SENVTALHHKVRELENR 704
           +Q KVK+LE+KLKE                        DQ   SE  ++L  KV ELE +
Sbjct: 747 LQHKVKDLESKLKEQVKESESHSFILQQKIKELDRKLKDQEQSSEAASSLQQKVNELERK 806

Query: 705 LKARTQEFEVHSGMLQQKIAELEEKLRKKEEYATAYCFRE---MPVTTPYNATVSRVETT 761
           L+ + +  EV + +L  KI ELEEKLR++E+ +    +++   +   TP        +  
Sbjct: 807 LREQEESSEV-AALLHLKIKELEEKLREQEQQSECLTYQDCASVSRVTPIEVKPRVRDEF 865

Query: 762 IDDMDPPSLRILNHNGSNRAMNTESESDLLKGTNSLRELRRKRQTQWRGSENNILLSASF 821
           + D++P  LR  N N  NR M+    S  L+GT+SL + R++R+ +    ENN ++S S 
Sbjct: 866 MSDVEPNILR--NSNTMNRPMS--QGSTFLRGTDSLSDKRKRREFRSTEMENNTIVSNSS 921

Query: 822 LEKNSLTAESNKP 834
            +  +  ++  KP
Sbjct: 922 NDNRTRQSDPPKP 934

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067114|ref|XP_002302362.1| predicted protein [Populus trichocarpa] gi|222844088|gb|EEE81635.1| predicted protein [Populus trichocarpa]

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/943 (58%), Positives = 664/943 (70%), Gaps = 130/943 (13%)

Query: 4   LYQSARFG-NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIY 62
           +YQSARFG N SY+  ++  G+YLVDLHFAEIV  NGPKGMRVFDV       + E+D+Y
Sbjct: 75  VYQSARFGTNLSYKFNDMPAGEYLVDLHFAEIVYTNGPKGMRVFDV-------ISELDVY 127

Query: 63  SIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPES--------- 113
           SIVG NKPLQVVDVRVSVG D V+ +RFDG  GSPIV+GI IK AT +P           
Sbjct: 128 SIVGDNKPLQVVDVRVSVGEDGVIFMRFDGVVGSPIVSGIYIKQATELPSKAIVSVLYLP 187

Query: 114 -----LGDHGHL-------------------ICNGCGTEIEITPAQDKLMRMKSMAKCEK 149
                +G    L                   +CN C  E++++  Q+++MR  S+A+ EK
Sbjct: 188 YWSVLIGSLTSLRCFLSYKLNAESSVKQELSLCNNCAAEVKVSSDQNRVMRTNSLARYEK 247

Query: 150 RIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKD 209
           +I+ELK QCQLKTDEC+EAWMSLTAAN++LEK+RM LDN+ F+N+ LDQA++KQ A+L+D
Sbjct: 248 KIEELKAQCQLKTDECHEAWMSLTAANEELEKIRMELDNRFFRNMQLDQAMQKQKAELRD 307

Query: 210 VASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHECASSVPQLNKMVSTIQVL--- 266
           V+  YE DK+LW  A+++ E+KI + K EHSQL  +AH CA+++P+LNKM+  ++ +   
Sbjct: 308 VSRRYECDKKLWAAAIDDFEKKIKMMKIEHSQLFHDAHACANTIPELNKMIIAVRDIVAQ 367

Query: 267 --------------------------GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGE 300
                                     GNIRVFCRCRPL+KEE S G   VVDFSAAKD  
Sbjct: 368 HEDLKLKLNEEQAKSKKLYNQALEAKGNIRVFCRCRPLTKEEMSIGCQTVVDFSAAKD-- 425

Query: 301 LGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK 360
                VDVFADAS LVTSVLDGYNVCIFAYGQTGTGKTFTMEGT+QNRGVNYRTL  LFK
Sbjct: 426 -----VDVFADASALVTSVLDGYNVCIFAYGQTGTGKTFTMEGTKQNRGVNYRTLHQLFK 480

Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTS-KKLEIRQASEGFHHVPGLTEAKIE 419
           IAE+RKET TY ISVS LEVYNEQIRDLL TS T+ K+L+I+Q S+G  HVPG+ EAK+E
Sbjct: 481 IAEQRKETVTYDISVSVLEVYNEQIRDLLATSTTTTKRLDIKQVSDGVQHVPGIVEAKVE 540

Query: 420 NIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAG 479
           NIK+ WDVL  GSNARAVGSNNVNE SSRSHCMLC  V+AKNL+N ECT SKLWLVDLAG
Sbjct: 541 NIKQAWDVLQAGSNARAVGSNNVNERSSRSHCMLCTMVRAKNLVNDECTMSKLWLVDLAG 600

Query: 480 SERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDS 539
           SERLAKTEVQGERLKEAQNINRSLSALGDVIS LA KS HIPYRNSKLTHLLQDSLGGDS
Sbjct: 601 SERLAKTEVQGERLKEAQNINRSLSALGDVISCLANKSSHIPYRNSKLTHLLQDSLGGDS 660

Query: 540 KTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVG 599
           KTLM +QISPSE D+GETLSSLNFA+RVRGVEL PA+KQID+ +LQK K ML+K KQE+ 
Sbjct: 661 KTLMLVQISPSEHDIGETLSSLNFATRVRGVELGPAKKQIDMGELQKFKTMLDKAKQELR 720

Query: 600 SKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSE 659
           SKDD ++KLEE FQN+E KAK   QL KNQQEK+NELESQL SKT+LCRQLEKQLLQ+SE
Sbjct: 721 SKDDAMRKLEEGFQNVEGKAKVKDQLFKNQQEKVNELESQLASKTELCRQLEKQLLQLSE 780

Query: 660 GMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGML 719
           G K KEEICS+ Q+KV ELE KLKE +++ ++  LH KV+ELENR+K RTQEFE+H+  L
Sbjct: 781 GKKEKEEICSDFQQKVNELEKKLKEQEEAASMN-LHCKVKELENRMKERTQEFELHTKSL 839

Query: 720 QQKIAELEEKLRKK--------------------------------------------EE 735
           QQK+ ELE +++++                                             +
Sbjct: 840 QQKVKELENRMKERTQEFELHTKSLQQKLKEAENKLWEKENSESQSLQHKINVLGEGLRQ 899

Query: 736 YATAYCFREMPVTTPYNAT--VSRVETTIDDMDPPSLRILNHNGSNRAMNTESESDLLKG 793
           +    C    P      AT  +SR+E  I D+DP   + LN   +NR +N   E  LL G
Sbjct: 900 HEQGDCLPRPPSAEKSEATPVLSRMEN-IYDVDPLGQKSLN--STNRTIN--QEPSLLHG 954

Query: 794 TNSLRELRRKRQTQWRGSENNILLSASFLEKNSLTAESNKPRH 836
             SLRELRRK   + RG ENN L+SAS LEK  L +ES+K +H
Sbjct: 955 NTSLRELRRKGDIKSRGMENNFLISASSLEKKRLPSESSKAKH 997

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583233|ref|XP_002532381.1| ATP binding protein, putative [Ricinus communis] gi|223527905|gb|EEF29993.1| ATP binding protein, putative [Ricinus communis]

 Score = 1042 bits (2694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/781 (65%), Positives = 615/781 (78%), Gaps = 50/781 (6%)

Query: 3   VLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIY 62
            +YQSARFG+FSYR  NL PG Y VDLHF EI+N NGP+G+RVFDVF+QEEKVL E DI+
Sbjct: 122 FIYQSARFGSFSYRFDNLPPGSYFVDLHFVEIINTNGPRGLRVFDVFIQEEKVLSEFDIF 181

Query: 63  SIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLIC 122
           S+VGANKPLQ+VD RVSV  D V+LIRF+G  GSP+V+G+CI+ A  V        +L C
Sbjct: 182 SVVGANKPLQLVDSRVSVKEDGVILIRFEGIIGSPVVSGLCIRKAPEVSVPCQTQDYLKC 241

Query: 123 NGCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKV 182
           N C TEIEI+  Q K++R ++  K EKRI+EL  +CQ K++EC+EAWMSLTAAN+QLEKV
Sbjct: 242 NNCATEIEISSDQKKILRARATDKYEKRIQELITECQHKSNECHEAWMSLTAANEQLEKV 301

Query: 183 RMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQL 242
           RM LDNK FQ+  LDQ + KQA  L+++ ++YERDK+ W  A+  L+ K+ + KEEHS+L
Sbjct: 302 RMELDNKTFQSRSLDQTVGKQAENLRNITNMYERDKQYWAAAVENLQNKVKMMKEEHSRL 361

Query: 243 AREAHECASSVPQLNKMVSTIQVL-----------------------------GNIRVFC 273
           + EAHECA S+P+L+KMV+ +Q L                             GNIRVFC
Sbjct: 362 SYEAHECADSIPELSKMVTAVQALVAQCEDLKAKYSEEQAKRKELYNQIQEAKGNIRVFC 421

Query: 274 RCRPLSKEEASAGHAMVVDFSAAKDGELGILT--------------------VDVFADAS 313
           RCRPLSK E+SAG   VVDF AAKDG+LGI+T                    VDVFADAS
Sbjct: 422 RCRPLSKAESSAGCTTVVDFDAAKDGDLGIITGGSTRKTFKFDRVFTPRDNQVDVFADAS 481

Query: 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSI 373
           PLV SVLDGYNVCIFAYGQTGTGKTFTMEGT+Q+RGVNYRTLE LFKIA+ER ETFTYSI
Sbjct: 482 PLVLSVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFKIAKERSETFTYSI 541

Query: 374 SVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSN 433
           SVS LEVYNEQIRDLL TSPTSKKLEI+Q+SEG HHVPG+ EAK++N+KEVW+VL  GSN
Sbjct: 542 SVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEAKVDNLKEVWNVLQAGSN 601

Query: 434 ARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERL 493
           ARAVGSNNVNEHSSRSHCMLC+ VKAKNL+NGECTKSKLWLVDLAGSERLAKT+VQGERL
Sbjct: 602 ARAVGSNNVNEHSSRSHCMLCVMVKAKNLMNGECTKSKLWLVDLAGSERLAKTDVQGERL 661

Query: 494 KEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQD 553
           KEAQNINRSLSALGDVI +LATKS HIPYRNSKLTHLLQDSLGGDSKTLMF+QISP+EQD
Sbjct: 662 KEAQNINRSLSALGDVIYALATKSSHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPTEQD 721

Query: 554 LGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQ 613
           + ETLSSLNFA+RVRG+E  PA++QID S+LQK+K++L+K +QE  SK++ ++KLEEN Q
Sbjct: 722 VSETLSSLNFATRVRGIEFGPAKRQIDTSELQKMKLLLDKARQECKSKEESLRKLEENLQ 781

Query: 614 NLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQR 673
           NLE KA+G  Q+ KNQQEKI ELE QLE K+ L  QL KQ+ Q+S+ +KGKE+IC+ + +
Sbjct: 782 NLENKARGKDQVYKNQQEKIKELEGQLEFKSTLHSQLGKQISQLSDRLKGKEDICNGLLQ 841

Query: 674 KVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKK 733
           KVKEL+NKL+E  QS++ TA   KV+ELEN+LK + QE E +S  LQ KI ELE KL+++
Sbjct: 842 KVKELDNKLRERQQSDS-TAFQQKVKELENKLKEQVQESESYSFALQHKIKELERKLKEQ 900

Query: 734 E 734
           E
Sbjct: 901 E 901

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142089|emb|CBI19292.3| unnamed protein product [Vitis vinifera]

 Score = 1038 bits (2683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/853 (63%), Positives = 629/853 (73%), Gaps = 83/853 (9%)

Query: 59  IDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHG 118
           +DIYSIV ANKPLQ+VDVRVSV  D ++ + F+G  GSP++NGICI+ A  +  S   HG
Sbjct: 21  LDIYSIVRANKPLQLVDVRVSVTKDGMITVSFEGVHGSPVINGICIRRAPPLAASEVKHG 80

Query: 119 HLICNGCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQ 178
            + CN C  EIE++ AQ KL+RMK  AK EK+I+EL  QCQLK+DECYEAWMSLTAAN Q
Sbjct: 81  SIACNNCAAEIELSSAQSKLIRMKFAAKYEKKIEELSGQCQLKSDECYEAWMSLTAANKQ 140

Query: 179 LEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEE 238
           LE VR  LD + FQN   DQA+EKQA KL+D +++YE DK+ W+ ++NELE KI   K E
Sbjct: 141 LEDVRAELDKRIFQNYYQDQAMEKQAEKLRDASNMYEHDKKFWVASINELESKIKNMKRE 200

Query: 239 HSQLAREAHECASSVPQLNKMVSTIQV--------------------------------- 265
           HSQL+ EAH+ A+S+P LNKM+  +Q                                  
Sbjct: 201 HSQLSCEAHKSANSIPDLNKMIIAVQAIAVAECDDLKLKYSEEQEKRKKLYNQIQEAKGN 260

Query: 266 ---LGNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILT----------------- 305
              L N+ VFCRCRPLSKEE ++GHA +VDF+AAKDGEL +LT                 
Sbjct: 261 LFYLKNLMVFCRCRPLSKEEVASGHATIVDFTAAKDGELAMLTGGSTKKIFKFDRVYTPN 320

Query: 306 ---VDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIA 362
              VD+ ADASP+V SVLDGYNVCIFAYGQTGTGKTFTMEGT +NRGVNYRTLE LFKIA
Sbjct: 321 DDQVDISADASPMVISVLDGYNVCIFAYGQTGTGKTFTMEGTNKNRGVNYRTLEQLFKIA 380

Query: 363 EERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIK 422
           EERKE F Y+ISVS LEVYNEQIRDLL TSPTSKKLEIRQA+EG HHVPG+ EAK+ENIK
Sbjct: 381 EERKEIFKYTISVSVLEVYNEQIRDLLATSPTSKKLEIRQATEGVHHVPGIVEAKVENIK 440

Query: 423 EVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSER 482
           EVWDVL  GSN RAVGSNNVNEHSSRSHCMLCI V+AKNL+NGECT SKLWLVDLAGSER
Sbjct: 441 EVWDVLQAGSNGRAVGSNNVNEHSSRSHCMLCIMVRAKNLMNGECTNSKLWLVDLAGSER 500

Query: 483 LAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTL 542
           LAKTEVQGERLKEAQNINRSLSALGDVIS+LATKS H+PYRNSKLTHLLQDSLGGDSKTL
Sbjct: 501 LAKTEVQGERLKEAQNINRSLSALGDVISALATKSSHVPYRNSKLTHLLQDSLGGDSKTL 560

Query: 543 MFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKD 602
           MF+QISPSEQDLGETLSSLNFA+RVRGVEL PA+KQID+ +LQ++KMML++ KQE  SKD
Sbjct: 561 MFVQISPSEQDLGETLSSLNFATRVRGVELGPAKKQIDMGELQRMKMMLDRVKQESNSKD 620

Query: 603 DVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMK 662
           + ++KLEENFQNLE KAK   Q+ +NQ+EK+NELE QLESKT+ CRQLEKQLLQ+SE +K
Sbjct: 621 EALRKLEENFQNLEGKAKSRDQIYRNQKEKVNELELQLESKTESCRQLEKQLLQLSEEVK 680

Query: 663 GKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQK 722
            KEEI   +Q+KVKELENK+KEH+  E+ T   HKV+ELEN+LK RTQ+FE+H+ +L+QK
Sbjct: 681 KKEEIGLTLQQKVKELENKVKEHELEESKT---HKVKELENKLKERTQDFELHTSILKQK 737

Query: 723 IAELEEKLRKKEEYATAYCFR------------------EMPVTTPYNATVSRVETTIDD 764
           I ELE KL  + E                          E P  TP          T+  
Sbjct: 738 IKELESKLVMQGESLGFQSLEKKNKGLEEKLRQPTPGSAERPRVTPNEQKAWSRTGTMCG 797

Query: 765 MDPPSLRILNHNGSNRAMNTESESDLLKGTNSLRELRRKRQTQWRGSENNILLSASFLE- 823
            DP SLR L  N SN AM   S+S LLKG +SLRELRRKR+ Q +G ENN LLSAS +E 
Sbjct: 798 TDPQSLRSL--NSSNGAM---SQSGLLKGADSLRELRRKRELQSKGIENNFLLSASLIEH 852

Query: 824 KNSLTAESNKPRH 836
           K +L  ESNK RH
Sbjct: 853 KTTLQKESNKGRH 865

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802316|emb|CAN63715.1| hypothetical protein VITISV_000434 [Vitis vinifera]

 Score = 1033 bits (2670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/928 (58%), Positives = 656/928 (70%), Gaps = 109/928 (11%)

Query: 2    AVLYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDI 61
             ++YQSAR GNFSYR  NL PGDY VDLHF EI+N +GPKGMRVF+V       L + DI
Sbjct: 121  PLIYQSARLGNFSYRFENLHPGDYFVDLHFVEIINTDGPKGMRVFNV-------LSDFDI 173

Query: 62   YSIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIK---------------- 105
            +SIVGANKP+Q+VD+RV V  D +++IRF+G  GSP+V+GICI+                
Sbjct: 174  FSIVGANKPVQLVDLRVPVKEDGLIVIRFEGVNGSPMVSGICIRKAPMLSRNKIFIHLSC 233

Query: 106  NATNVPESLGDHGHLICNGCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDEC 165
            N+  VP +  ++  LICN C  EIE++P Q KL + K   K EK+I+EL +QCQ KTDEC
Sbjct: 234  NSKTVPPASPEY--LICNHCSAEIEVSPIQKKLKQTKFTVKYEKKIEELTMQCQRKTDEC 291

Query: 166  YEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAM 225
            YEAWMSLTAAN+QLEKVRM LDNK FQ   LDQ +EKQA KL+ ++S YE DK++W+ A+
Sbjct: 292  YEAWMSLTAANEQLEKVRMELDNKLFQTYSLDQTVEKQAEKLRHISSKYEHDKKVWVAAL 351

Query: 226  NELERKILIWKEEHSQLAREAHECASSVPQLNKMVSTIQVLGNIRVFCRCRPLSKEEASA 285
            N+L+ KI   K+EHSQL+REAHECA S+P+LN+MV  +Q LGNIRVFCRCRP  KEE SA
Sbjct: 352  NDLDDKIKXMKQEHSQLSREAHECADSIPELNQMVVAVQALGNIRVFCRCRPFRKEELSA 411

Query: 286  GHAMVVDFSAAKDGELGILT--------------------VDVFADASPLVTSVLDGYNV 325
            G A VVD   AKDG+LGILT                    VDVFADASP+V SVLDGYNV
Sbjct: 412  GSATVVDLDXAKDGDLGILTGGSTRKNFKFDRVYTPKDDQVDVFADASPMVISVLDGYNV 471

Query: 326  CIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQI 385
            CIFAYGQTGTGKTFTMEGTQQNRGVNYRTLE LFK+AEER +TFTYS+SVS LEVYNEQI
Sbjct: 472  CIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEELFKVAEERSDTFTYSLSVSVLEVYNEQI 531

Query: 386  RDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEH 445
            RDLL TSPTSKKLEI+Q+SEGFHHVPG+ EAK+ENIKEVW VL  GSNARAVGSNNVNEH
Sbjct: 532  RDLLATSPTSKKLEIKQSSEGFHHVPGIVEAKVENIKEVWKVLQAGSNARAVGSNNVNEH 591

Query: 446  SSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSA 505
            SSRSHCMLCI VKAKNL+NGE TKSKLWLVDLAGSERLAKT+VQGERLKEAQNINRSLSA
Sbjct: 592  SSRSHCMLCIMVKAKNLMNGESTKSKLWLVDLAGSERLAKTDVQGERLKEAQNINRSLSA 651

Query: 506  LGDVISSLATKSGHIPY------------------------------RNSKLTHLLQDSL 535
            LGDVIS+LATKS H+PY                              RNSKLTHLLQDSL
Sbjct: 652  LGDVISALATKSSHVPYRSNXRYFLPSDYSCINFHILIYFRILFVDFRNSKLTHLLQDSL 711

Query: 536  GGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTK 595
            GGDSKTLMF+QISPSE DLGETLSSLNFASRVRGVEL PA++QID  +LQK+K ML+K +
Sbjct: 712  GGDSKTLMFVQISPSEHDLGETLSSLNFASRVRGVELGPAKRQIDTGELQKMKTMLDKAR 771

Query: 596  QEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLL 655
            QE  SKD+ ++KLE + Q+LE KA+G  Q+ K QQEKI ELE QLE KT L  Q EKQ+ 
Sbjct: 772  QESRSKDESLRKLEXSLQHLEGKARGKDQIYKTQQEKIKELEGQLELKTSLHGQSEKQIS 831

Query: 656  QVSEGMKGKEEICSNVQRKVKELENKLKEH--------------------------DQSE 689
            Q+SE +KG+ E+CS++Q KVK+LE+KLKE                             SE
Sbjct: 832  QLSERLKGRXEVCSSLQHKVKDLESKLKEQVKESESHSFXLQQKIKELXRKLKXQEQSSE 891

Query: 690  NVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYATAYCFRE---MP 746
              ++L  KV ELE +L+ + +  EV + +L  KI ELEEKLR++E+ +    +++   + 
Sbjct: 892  AASSLQQKVNELERKLREQEESSEV-AALLHLKIKELEEKLREQEQQSECLTYQDCASVS 950

Query: 747  VTTPYNATVSRVETTIDDMDPPSLRILNHNGSNRAMNTESESDLLKGTNSLRELRRKRQT 806
              TP        +  + D++P  LR  N N  NR M+    S  L+GT+SL + R++R+ 
Sbjct: 951  RVTPIEVKPRVRDEFMSDVEPNILR--NSNTMNRPMS--QGSTFLRGTDSLSDKRKRREF 1006

Query: 807  QWRGSENNILLSASFLEKNSLTAESNKP 834
            +    ENN ++S S  +  +  ++  KP
Sbjct: 1007 RSTEMENNTIVSNSSNDNRTRQSDPPKP 1034

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777244|emb|CAN72159.1| hypothetical protein VITISV_019022 [Vitis vinifera]

 Score =  992 bits (2565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/875 (60%), Positives = 625/875 (71%), Gaps = 86/875 (9%)

Query: 4   LYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYS 63
           +YQSARFGNF Y+  NLSPGDY VDLHFAEIVN NGPKGMRVFDV       L E+DIYS
Sbjct: 79  IYQSARFGNFCYQFENLSPGDYFVDLHFAEIVNTNGPKGMRVFDV-------LSELDIYS 131

Query: 64  IVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLICN 123
           IV ANKPLQ+VDVRVSV  D ++ + F+G  GSP++NGICI+ A  +  S   HG + CN
Sbjct: 132 IVRANKPLQLVDVRVSVTKDGMITVSFEGVHGSPVINGICIRRAPPLAASEVKHGSIACN 191

Query: 124 GCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVR 183
            C  EIE++ AQ KL+RMK  AK EK+I+EL  QCQLK+DECYEAWMSLTAAN QLE VR
Sbjct: 192 NCAAEIELSSAQSKLIRMKFAAKYEKKIEELSGQCQLKSDECYEAWMSLTAANKQLEDVR 251

Query: 184 MGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLA 243
             LD + FQN   DQA+EKQA KL+D +++YE DK+ W+ ++NELE KI   K EHSQL+
Sbjct: 252 AELDKRIFQNYYQDQAMEKQAEKLRDASNMYEHDKKFWVASINELESKIKNMKREHSQLS 311

Query: 244 REAHECASSVPQLNKMVSTIQVLGNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGI 303
            EAH+ A+S+P LNKM+  +Q +GNIRVFCRCRPLSKEE ++GHA +VDF+AAKDGEL +
Sbjct: 312 CEAHKSANSIPDLNKMIIAVQAIGNIRVFCRCRPLSKEEVASGHATIVDFTAAKDGELAM 371

Query: 304 LT---------------------------------VDVFADASPLVTSVLDGYNVCIFAY 330
           LT                                 VD+ ADASP+       + V I   
Sbjct: 372 LTGGSTKKIFKFDRVYTPNDDQVCRTXADVSFVITVDISADASPMGQEKPSQWKVPI--- 428

Query: 331 GQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAE-----ERKE-TFTYSISVSALEVYNEQ 384
                                 RT E +  +       +RKE  F Y+ISVS LEVYNEQ
Sbjct: 429 ----------------------RTEESIIGLWSSCLRLQRKERNFKYTISVSVLEVYNEQ 466

Query: 385 IRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNE 444
           IRDLL TSPTSKKLEIRQA+EG HHVPG+ EAK+ENIKEVWDVL  GSN RAVGSNNVNE
Sbjct: 467 IRDLLATSPTSKKLEIRQATEGVHHVPGIVEAKVENIKEVWDVLQAGSNGRAVGSNNVNE 526

Query: 445 HSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLS 504
           HSSRSHCMLCI V+AKNL+NGECT SKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLS
Sbjct: 527 HSSRSHCMLCIMVRAKNLMNGECTNSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLS 586

Query: 505 ALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFA 564
           ALGDVIS+LATKS H+PYRNSKLTHLLQDSLGGDSKTLMF+QISPSEQDLGETLSSLNFA
Sbjct: 587 ALGDVISALATKSSHVPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLGETLSSLNFA 646

Query: 565 SRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQ 624
           +RVRGVEL PA+KQID+ +LQ++KMML++ KQE  SKD+ ++KLEENFQNLE KAK   Q
Sbjct: 647 TRVRGVELGPAKKQIDMGELQRMKMMLDRVKQESNSKDEALRKLEENFQNLEGKAKSRDQ 706

Query: 625 LCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKE 684
           + +NQ+EK+NELE QLESKT+ CRQLEKQLLQ+SE +K KEEI   +Q KVKELENKLKE
Sbjct: 707 IYRNQKEKVNELELQLESKTESCRQLEKQLLQLSEXVKKKEEIGLTLQXKVKELENKLKE 766

Query: 685 HDQSE--NVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYATAYCF 742
             Q    + + L  K++ELE++L  + +     S  L++K   LEEKLR+    +     
Sbjct: 767 RTQDFELHTSILKQKIKELESKLVMQGESLGFQS--LEKKNKGLEEKLRQPTPGSA---- 820

Query: 743 REMPVTTPYNATVSRVETTIDDMDPPSLRILNHNGSNRAMNTESESDLLKGTNSLRELRR 802
            E P  TP          T+   DP SLR L  N SN AM   S+S LLKG +SLRELRR
Sbjct: 821 -ERPRVTPNEQKAWSRTGTMCGTDPQSLRSL--NSSNGAM---SQSGLLKGADSLRELRR 874

Query: 803 KRQTQWRGSENNILLSASFLE-KNSLTAESNKPRH 836
           KR+ Q +G ENN LLSAS +E K +L  ESNK RH
Sbjct: 875 KRELQSKGIENNFLLSASLIEHKTTLQKESNKGRH 909

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529697|ref|XP_003533425.1| PREDICTED: uncharacterized protein LOC100800016 [Glycine max]

 Score =  988 bits (2553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/920 (56%), Positives = 641/920 (69%), Gaps = 92/920 (10%)

Query: 4    LYQSARFGNFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYS 63
            +YQSAR G+F YR  NL PGDY+VDLHF EI+N NGPKGMRVF+V +Q+EKVL E+DIY+
Sbjct: 105  IYQSARLGSFCYRFDNLPPGDYIVDLHFVEIININGPKGMRVFNVHIQDEKVLSELDIYA 164

Query: 64   IVGANKPLQVVDVRVSVGMDEVLLIRFDGACGSPIVNGICIKNATNVPESLGDHGHLICN 123
            +VGANKPLQ+VD+RVSV  D V+LIRF+   GSP+V+GICI+ AT  P       ++ C+
Sbjct: 165  VVGANKPLQMVDLRVSVKDDGVILIRFESISGSPVVSGICIRRATKAPVPQVKSDYIKCS 224

Query: 124  GCGTEIEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVR 183
             C  +IEI  +Q K+M+ KS AK E +IKEL +QC LK  ECY+AWMSLTA N+QLE+V+
Sbjct: 225  SCAVQIEIPSSQMKVMQAKSTAKYESKIKELTMQCDLKAKECYQAWMSLTATNEQLEEVQ 284

Query: 184  MGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLA 243
            M LD   F +L  DQ +EKQA  L+++++ YE DK+ W  A+N L+ KI + K ++S L+
Sbjct: 285  MELDKVTFNSLTTDQTVEKQAESLRNISNRYELDKKKWAEAINSLQEKIKLMKSDYSNLS 344

Query: 244  REAHECASSVPQLNKMVSTIQVL-----------------------------GNIRVFCR 274
             EAHEC  S+P+LNKMV  +Q L                             GNIRVFCR
Sbjct: 345  FEAHECVDSIPELNKMVFAVQDLVKQCEDLKVKYNEEMAKRKKLFNEVQEAKGNIRVFCR 404

Query: 275  CRPLSKEEASAGHAMVVDFSAAKDGELGILT--------------------VDVFADASP 314
            CRPL+K E SAG   +VDF AAKD  LGILT                    VDVFADAS 
Sbjct: 405  CRPLNKAEISAGCNTIVDFDAAKDSCLGILTSGSTKKSFRFDRVYTPKDDQVDVFADASS 464

Query: 315  LVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSIS 374
            +V SVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLE LFK+++ER ETF+Y IS
Sbjct: 465  MVISVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEHLFKVSKERSETFSYDIS 524

Query: 375  VSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNA 434
            VS +EVYNEQIRDLL T  TSK+LEI+QASEGFHHVPG+ EA+I+NI EVW+VL +G+NA
Sbjct: 525  VSVIEVYNEQIRDLLATGQTSKRLEIKQASEGFHHVPGVVEARIDNINEVWNVLQVGNNA 584

Query: 435  RAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLK 494
            RAVGSNNVNEHSSRSHC+LCI+VKAKNL+NGE TKSKLWLVDLAGSERLAKT+VQGERLK
Sbjct: 585  RAVGSNNVNEHSSRSHCLLCIAVKAKNLLNGESTKSKLWLVDLAGSERLAKTDVQGERLK 644

Query: 495  EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDL 554
            EAQNINRSLSALGDVIS+LA KS HIPYRNSKLTHLLQDSLGGDSKTLMF+QISPS+QD+
Sbjct: 645  EAQNINRSLSALGDVISALAAKSSHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSDQDV 704

Query: 555  GETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQN 614
            GETLSSLNFA+RVRGVEL P +KQID S++QK+K MLEK + E   KD+ ++KLEEN QN
Sbjct: 705  GETLSSLNFATRVRGVELGPVKKQIDTSEVQKMKAMLEKARSECRIKDESMRKLEENLQN 764

Query: 615  LEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRK 674
            LE KAKG  Q+ KN QEKI ELE Q+E K  +    EKQ+ Q+S+ ++GKEE CS +Q+K
Sbjct: 765  LESKAKGKDQIYKNLQEKIKELEGQIELKKAMQNDSEKQISQLSDKLRGKEETCSTLQQK 824

Query: 675  VKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKE 734
            VKELE K+KE  QSE+ +    KV +LE +LK + Q  E  S +L+ KI ELE KL+++E
Sbjct: 825  VKELEKKMKEQLQSESAS-FQQKVWDLEKKLKDQMQGSESESAILKDKIKELERKLKEQE 883

Query: 735  EYATAYCFREMPV--------TTPYNATVSRVETTIDDMDP-----------PS------ 769
            + + +   ++M             +  T S V+ T+    P           PS      
Sbjct: 884  QSSMSLLRQQMEQLEDRYREREQQWQQTDSFVDATVKAATPDVGKSCMSEECPSEIETGI 943

Query: 770  LR--------------ILNHNGSNRAMNTESESDLLKGTNSLRELRRKRQTQWRGSENNI 815
            LR              +   NGS R ++    S L KG +S  ++R KR+ +    ENN 
Sbjct: 944  LRCSDSENRQISQGSSLFKGNGSTRKIS--QGSCLFKGNDSTHKIRSKREFR-SNDENNF 1000

Query: 816  LLSASFLEKNSLTAESNKPR 835
             + +S      +  +S+ P+
Sbjct: 1001 AMPSSLQHDRRVARKSDPPK 1020

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	860
UNIPROTKB|F1LPW9	824	Kifc3 "Protein Kifc3" [Rattus	0.318	0.332	0.541	2.9e-86
TAIR|locus:2061992	983	AT2G47500 [Arabidopsis thalian	0.388	0.339	0.492	3.6e-86
MGI|MGI:109202	824	Kifc3 "kinesin family member C	0.318	0.332	0.541	4.6e-86
UNIPROTKB|B7Z484	848	KIFC3 "cDNA FLJ56036, highly s	0.318	0.323	0.537	4.6e-86
UNIPROTKB|F5H3M2	724	KIFC3 "Kinesin-like protein KI	0.318	0.378	0.537	4.6e-86
UNIPROTKB|F5H4I9	768	KIFC3 "Kinesin-like protein KI	0.318	0.356	0.537	4.6e-86
UNIPROTKB|Q9BVG8	833	KIFC3 "Kinesin-like protein KI	0.318	0.328	0.537	4.6e-86
UNIPROTKB|E2QS65	764	KIFC3 "Uncharacterized protein	0.318	0.358	0.534	2.5e-85
UNIPROTKB|F1PZT6	933	KIFC3 "Uncharacterized protein	0.318	0.293	0.534	2.5e-85
UNIPROTKB|F6UN94	842	KIFC3 "Uncharacterized protein	0.318	0.325	0.534	2.5e-85

UNIPROTKB|F1LPW9 Kifc3 "Protein Kifc3" [Rattus norvegicus (taxid:10116)]

 Score = 762 (273.3 bits), Expect = 2.9e-86, Sum P(3) = 2.9e-86
 Identities = 150/277 (54%), Positives = 201/277 (72%)

Query:   307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
             DVF +   L+TS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   +E+ 
Sbjct:   502 DVFQEVQALITSCIDGFNVCIFAYGQTGAGKTYTMEGTPENPGINQRALQLLFSEVQEKA 561

Query:   367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENIKEV 424
               + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE +++++ ++
Sbjct:   562 SDWQYNITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDI 620

Query:   425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
               V   G N R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGSER+ 
Sbjct:   621 NKVFEFGYNNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 680

Query:   485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
             K+  +G RL+EAQ+INRSLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSKTLM 
Sbjct:   681 KSGAEGNRLREAQHINRSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 740

Query:   545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI 581
             +Q+SP E++  ETL SL FA RVR VEL P  ++ ++
Sbjct:   741 VQVSPVEKNTSETLYSLKFAERVRSVELGPGSRRTEL 777

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

TAIR|locus:2061992 AT2G47500 [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 3.6e-86, Sum P(3) = 3.6e-86
 Identities = 171/347 (49%), Positives = 236/347 (68%)

Query:   307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG----TQQNRGVNYRTLELLFKIA 362
             +VF+D  PL+ SVLDGYNVCIFAYGQTG+GKTFTM G    T++++GVNYR L  LF +A
Sbjct:   457 EVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTFTMSGPRDLTEKSQGVNYRALGDLFLLA 516

Query:   363 EERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIK 422
             E+RK+TF Y I+V  +E+YNEQ+RDLL T  ++K+LEIR +S+    VP  +   + +  
Sbjct:   517 EQRKDTFRYDIAVQMIEIYNEQVRDLLVTDGSNKRLEIRNSSQKGLSVPDASLVPVSSTF 576

Query:   423 EVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSER 482
             +V D++  G   RAVGS  +N+ SSRSH  L + V+ ++L +G   +  + LVDLAGSER
Sbjct:   577 DVIDLMKTGHKNRAVGSTALNDRSSRSHSCLTVHVQGRDLTSGAVLRGCMHLVDLAGSER 636

Query:   483 LAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTL 542
             + K+EV G+RLKEAQ+INRSLSALGDVI+SLA K+ H+PYRNSKLT LLQDSLGG +KTL
Sbjct:   637 VDKSEVTGDRLKEAQHINRSLSALGDVIASLAHKNPHVPYRNSKLTQLLQDSLGGQAKTL 696

Query:   543 MFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKD 602
             MF+ ISP    +GET+S+L FA RV  VEL  AR   D S ++++K  +   K  +  K+
Sbjct:   697 MFVHISPEADAVGETISTLKFAERVATVELGAARVNNDTSDVKELKEQIATLKAALARKE 756

Query:   603 DVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQ--LESKTQLC 647
                    E+ QN  +K  G  +  K +  ++ E+ +   +  K++ C
Sbjct:   757 ------AESQQNNILKTPGGSEKHKAKTGEV-EIHNNNIMTKKSESC 796

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007018 "microtubule-based movement" evidence=IEA

MGI|MGI:109202 Kifc3 "kinesin family member C3" [Mus musculus (taxid:10090)]

 Score = 762 (273.3 bits), Expect = 4.6e-86, Sum P(3) = 4.6e-86
 Identities = 150/277 (54%), Positives = 201/277 (72%)

Query:   307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
             DVF +   L+TS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   +E+ 
Sbjct:   502 DVFQEVQALITSCIDGFNVCIFAYGQTGAGKTYTMEGTPENPGINQRALQLLFSEVQEKA 561

Query:   367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENIKEV 424
               + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE +++++ ++
Sbjct:   562 SDWQYNITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDI 620

Query:   425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
               V   G N R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGSER+ 
Sbjct:   621 NKVFEFGYNNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 680

Query:   485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
             K+  +G RL+EAQ+INRSLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSKTLM 
Sbjct:   681 KSGAEGNRLREAQHINRSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 740

Query:   545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI 581
             +Q+SP E++  ETL SL FA RVR VEL P  ++ ++
Sbjct:   741 VQVSPVEKNTSETLYSLRFAERVRSVELGPGSRRTEL 777

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005871 "kinesin complex" evidence=IDA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005915 "zonula adherens" evidence=ISO

GO:0007017 "microtubule-based process" evidence=IDA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007030 "Golgi organization" evidence=IMP

GO:0008152 "metabolic process" evidence=TAS

GO:0008569 "minus-end-directed microtubule motor activity" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045218 "zonula adherens maintenance" evidence=ISO

GO:0090136 "epithelial cell-cell adhesion" evidence=ISO

UNIPROTKB|B7Z484 KIFC3 "cDNA FLJ56036, highly similar to Homo sapiens kinesin family member C3 (KIFC3), mRNA" [Homo sapiens (taxid:9606)]

 Score = 754 (270.5 bits), Expect = 4.6e-86, Sum P(3) = 4.6e-86
 Identities = 149/277 (53%), Positives = 200/277 (72%)

Query:   307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
             DVF +   LVTS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   +E+ 
Sbjct:   526 DVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKA 585

Query:   367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENIKEV 424
               + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE +++++ ++
Sbjct:   586 SDWEYTITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDI 644

Query:   425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
               V   G   R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGSER+ 
Sbjct:   645 NKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 704

Query:   485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
             K+  +G RL+EAQ+IN+SLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSKTLM 
Sbjct:   705 KSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 764

Query:   545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI 581
             +Q+SP E++  ETL SL FA RVR VEL P  ++ ++
Sbjct:   765 VQVSPVEKNTSETLYSLKFAERVRSVELGPGLRRAEL 801

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F5H3M2 KIFC3 "Kinesin-like protein KIFC3" [Homo sapiens (taxid:9606)]

 Score = 754 (270.5 bits), Expect = 4.6e-86, Sum P(3) = 4.6e-86
 Identities = 149/277 (53%), Positives = 200/277 (72%)

Query:   307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
             DVF +   LVTS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   +E+ 
Sbjct:   402 DVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKA 461

Query:   367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENIKEV 424
               + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE +++++ ++
Sbjct:   462 SDWEYTITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDI 520

Query:   425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
               V   G   R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGSER+ 
Sbjct:   521 NKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 580

Query:   485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
             K+  +G RL+EAQ+IN+SLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSKTLM 
Sbjct:   581 KSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 640

Query:   545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI 581
             +Q+SP E++  ETL SL FA RVR VEL P  ++ ++
Sbjct:   641 VQVSPVEKNTSETLYSLKFAERVRSVELGPGLRRAEL 677

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F5H4I9 KIFC3 "Kinesin-like protein KIFC3" [Homo sapiens (taxid:9606)]

 Score = 754 (270.5 bits), Expect = 4.6e-86, Sum P(3) = 4.6e-86
 Identities = 149/277 (53%), Positives = 200/277 (72%)

Query:   307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
             DVF +   LVTS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   +E+ 
Sbjct:   446 DVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKA 505

Query:   367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENIKEV 424
               + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE +++++ ++
Sbjct:   506 SDWEYTITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDI 564

Query:   425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
               V   G   R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGSER+ 
Sbjct:   565 NKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 624

Query:   485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
             K+  +G RL+EAQ+IN+SLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSKTLM 
Sbjct:   625 KSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 684

Query:   545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI 581
             +Q+SP E++  ETL SL FA RVR VEL P  ++ ++
Sbjct:   685 VQVSPVEKNTSETLYSLKFAERVRSVELGPGLRRAEL 721

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|Q9BVG8 KIFC3 "Kinesin-like protein KIFC3" [Homo sapiens (taxid:9606)]

 Score = 754 (270.5 bits), Expect = 4.6e-86, Sum P(3) = 4.6e-86
 Identities = 149/277 (53%), Positives = 200/277 (72%)

Query:   307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
             DVF +   LVTS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   +E+ 
Sbjct:   504 DVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKA 563

Query:   367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENIKEV 424
               + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE +++++ ++
Sbjct:   564 SDWEYTITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDI 622

Query:   425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
               V   G   R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGSER+ 
Sbjct:   623 NKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 682

Query:   485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
             K+  +G RL+EAQ+IN+SLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSKTLM 
Sbjct:   683 KSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 742

Query:   545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI 581
             +Q+SP E++  ETL SL FA RVR VEL P  ++ ++
Sbjct:   743 VQVSPVEKNTSETLYSLKFAERVRSVELGPGLRRAEL 779

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0090136 "epithelial cell-cell adhesion" evidence=IMP

GO:0045218 "zonula adherens maintenance" evidence=IMP

GO:0005915 "zonula adherens" evidence=IDA

GO:0003777 "microtubule motor activity" evidence=TAS

GO:0007601 "visual perception" evidence=TAS

UNIPROTKB|E2QS65 KIFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 754 (270.5 bits), Expect = 2.5e-85, Sum P(3) = 2.5e-85
 Identities = 148/277 (53%), Positives = 200/277 (72%)

Query:   307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
             DVF +   L+TS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   +E+ 
Sbjct:   442 DVFQEVQALITSCIDGFNVCIFAYGQTGAGKTYTMEGTPENPGINQRALQLLFSEVQEKA 501

Query:   367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENIKEV 424
               + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE +++++ ++
Sbjct:   502 SDWEYTITVSAAEIYNEVLRDLLGQEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSVADI 560

Query:   425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
               V   G   R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGSER+ 
Sbjct:   561 NKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 620

Query:   485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
             K+  +G RL+EAQ+IN+SLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSKTLM 
Sbjct:   621 KSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 680

Query:   545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI 581
             +Q+SP E++  ETL SL FA RVR VEL P  ++ ++
Sbjct:   681 VQVSPVEKNTSETLYSLKFAERVRSVELGPGSRRAEL 717

GO:0005524 "ATP binding" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|F1PZT6 KIFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 754 (270.5 bits), Expect = 2.5e-85, Sum P(3) = 2.5e-85
 Identities = 148/277 (53%), Positives = 200/277 (72%)

Query:   307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
             DVF +   L+TS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   +E+ 
Sbjct:   611 DVFQEVQALITSCIDGFNVCIFAYGQTGAGKTYTMEGTPENPGINQRALQLLFSEVQEKA 670

Query:   367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENIKEV 424
               + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE +++++ ++
Sbjct:   671 SDWEYTITVSAAEIYNEVLRDLLGQEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSVADI 729

Query:   425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
               V   G   R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGSER+ 
Sbjct:   730 NKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 789

Query:   485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
             K+  +G RL+EAQ+IN+SLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSKTLM 
Sbjct:   790 KSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 849

Query:   545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI 581
             +Q+SP E++  ETL SL FA RVR VEL P  ++ ++
Sbjct:   850 VQVSPVEKNTSETLYSLKFAERVRSVELGPGSRRAEL 886

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|F6UN94 KIFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 754 (270.5 bits), Expect = 2.5e-85, Sum P(3) = 2.5e-85
 Identities = 148/277 (53%), Positives = 200/277 (72%)

Query:   307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
             DVF +   L+TS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   +E+ 
Sbjct:   522 DVFQEVQALITSCIDGFNVCIFAYGQTGAGKTYTMEGTPENPGINQRALQLLFSEVQEKA 581

Query:   367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENIKEV 424
               + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE +++++ ++
Sbjct:   582 SDWEYTITVSAAEIYNEVLRDLLGQEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSVADI 640

Query:   425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
               V   G   R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGSER+ 
Sbjct:   641 NKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 700

Query:   485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
             K+  +G RL+EAQ+IN+SLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSKTLM 
Sbjct:   701 KSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 760

Query:   545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI 581
             +Q+SP E++  ETL SL FA RVR VEL P  ++ ++
Sbjct:   761 VQVSPVEKNTSETLYSLKFAERVRSVELGPGSRRAEL 797

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II001018 hypothetical protein (1046 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	860
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	1e-171
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	1e-131
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	1e-130
cd00106	328	cd00106, KISc, Kinesin motor domain	1e-117
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	4e-95
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	3e-94
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	5e-90
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	3e-87
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	1e-82
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	1e-76
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	2e-76
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	5e-75
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	3e-72
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	2e-66
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	1e-65
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	2e-62
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	6e-59
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	5e-57
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	6e-40
pfam11721	164	pfam11721, Malectin, Di-glucose binding within end	1e-19
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	5e-16
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-06
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
pfam10498	355	pfam10498, IFT57, Intra-flagellar transport protei	1e-04
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	2e-04
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-04
pfam12819	335	pfam12819, Malectin_like, Carbohydrate-binding pro	4e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-04
pfam13851	201	pfam13851, GAS, Growth-arrest specific micro-tubul	8e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
pfam05622	713	pfam05622, HOOK, HOOK protein	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
pfam05667	536	pfam05667, DUF812, Protein of unknown function (DU	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	0.003
CHL00094	621	CHL00094, dnaK, heat shock protein 70	0.004
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score =  499 bits (1286), Expect = e-171
 Identities = 181/328 (55%), Positives = 223/328 (67%), Gaps = 23/328 (7%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILT--------------------V 306
           GNIRVFCR RPL   E++   + V+ F     G + +                       
Sbjct: 2   GNIRVFCRVRPLLPSESTEY-SSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQE 60

Query: 307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
           DVF + SPLV S LDGYNVCIFAYGQTG+GKT+TMEG  +N G+  R LE LF  AEE K
Sbjct: 61  DVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELK 120

Query: 367 E-TFTYSISVSALEVYNEQIRDLLDTSP-TSKKLEIRQASEGFHHVPGLTEAKIENIKEV 424
           E  ++Y+I+ S LE+YNE IRDLL T P   KKLEI+  S+G  +V  LTE  + + +EV
Sbjct: 121 EKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEV 180

Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
             +L++GS  R+V S N+NEHSSRSH +  + ++  NL  GE T+ KL LVDLAGSERL 
Sbjct: 181 TRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSERLK 240

Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
           K+   G+RLKEAQ IN+SLSALGDVIS+L +K  H+PYRNSKLT+LLQDSLGG+SKTLMF
Sbjct: 241 KSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMF 300

Query: 545 LQISPSEQDLGETLSSLNFASRVRGVEL 572
           + ISP E +L ETL SL FASRVR VEL
Sbjct: 301 VNISPLESNLSETLCSLRFASRVRSVEL 328

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score =  395 bits (1016), Expect = e-131
 Identities = 156/326 (47%), Positives = 207/326 (63%), Gaps = 29/326 (8%)

Query: 274 RCRPLSKEEASAGHAMVVDFSAAKDGELGIL----------------------TVDVFAD 311
           R RPL++ E S G + +V+       +   +                         V+ +
Sbjct: 1   RVRPLNEREKSRGSSDIVNVDETDSEDKESVVITNKGREKTFTFDRVFDPEATQEFVYEE 60

Query: 312 -ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG--TQQNRGVNYRTLELLFKIAEERKE- 367
            A PLV SVL+GYNV IFAYGQTG+GKT+TMEG   ++  G+  R LE LF+  EERKE 
Sbjct: 61  TAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGDPPEEEPGIIPRALEDLFERIEERKER 120

Query: 368 TFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDV 427
            +++S+ VS LE+YNE+I DLL  S   KKL IR+  +   +V GLTE ++ + +EV ++
Sbjct: 121 KWSFSVRVSYLEIYNEKIYDLLSPSSKKKKLRIREDPKKGVYVKGLTEVEVTSAEEVLEL 180

Query: 428 LHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL-INGECTKSKLWLVDLAGSERLAKT 486
           L +G+  R V S N+NE SSRSH +  I+V+ +N   +G     KL LVDLAGSER +KT
Sbjct: 181 LELGNKNRTVASTNMNEESSRSHAIFTITVEQRNRDTDGSVKTGKLNLVDLAGSERASKT 240

Query: 487 EV-QGERLKEAQNINRSLSALGDVISSLATK-SGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
               G RLKEA NIN+SLSALG+VI++LA   S HIPYR+SKLT LLQDSLGG+SKTLM 
Sbjct: 241 GAAGGRRLKEAANINKSLSALGNVINALAENQSSHIPYRDSKLTRLLQDSLGGNSKTLMI 300

Query: 545 LQISPSEQDLGETLSSLNFASRVRGV 570
             ISPS+ +  ETLS+L FASR + +
Sbjct: 301 ANISPSDSNYEETLSTLRFASRAKNI 326

Length = 326

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score =  393 bits (1012), Expect = e-130
 Identities = 165/336 (49%), Positives = 216/336 (64%), Gaps = 29/336 (8%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGIL----------------------T 305
           NIRV  R RPL+K E S     VV F       L +                        
Sbjct: 1   NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGKTLTVRSPKNRQGEKKFTFDKVFDATASQ 60

Query: 306 VDVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEE 364
            DVF + A+PLV SVL+GYN  IFAYGQTG+GKT+TM GT  + G+  R L+ LF+  ++
Sbjct: 61  EDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEKIDK 120

Query: 365 RKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEV 424
           R+E + +S+ VS LE+YNE+IRDLL  +P+SKKLEIR+  +G  +V GLTE  + + +EV
Sbjct: 121 REEGWQFSVKVSYLEIYNEKIRDLL--NPSSKKLEIREDEKGGVYVKGLTEISVSSFEEV 178

Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHC--MLCISVKAKNLINGECTKSKLWLVDLAGSER 482
           +++L  G+  R V +  +NE SSRSH    + +  K KN  +G    SKL LVDLAGSER
Sbjct: 179 YNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSSGSGKASKLNLVDLAGSER 238

Query: 483 LAKTEVQGERLKEAQNINRSLSALGDVISSLA--TKSGHIPYRNSKLTHLLQDSLGGDSK 540
             KT  +G+RLKEA NIN+SLSALG+VI++LA  +KS HIPYR+SKLT LLQDSLGG+SK
Sbjct: 239 AKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKSRHIPYRDSKLTRLLQDSLGGNSK 298

Query: 541 TLMFLQISPSEQDLGETLSSLNFASRVRGVELSPAR 576
           TLM   +SPS  +L ETLS+L FASR + ++  P  
Sbjct: 299 TLMIANVSPSSSNLEETLSTLRFASRAKEIKNKPIV 334

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score =  360 bits (925), Expect = e-117
 Identities = 155/329 (47%), Positives = 200/329 (60%), Gaps = 29/329 (8%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV--------------------- 306
           NIRV  R RPL+  E S      +     K   L                          
Sbjct: 1   NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQ 59

Query: 307 -DVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEE 364
            DV+   A PLV SVL+GYN  IFAYGQTG+GKT+TM G+ ++ G+  R LE LF + +E
Sbjct: 60  EDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDE 119

Query: 365 RKETFT-YSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKE 423
           RKE    +S+SVS LE+YNE++ DLL   P SK L +R+  +G  +V GLTE ++ + ++
Sbjct: 120 RKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAED 179

Query: 424 VWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGEC--TKSKLWLVDLAGSE 481
              +L  G   R   S  +NE SSRSH +  I V+ +N  N       SKL LVDLAGSE
Sbjct: 180 ALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSE 239

Query: 482 RLAKTEVQGERLKEAQNINRSLSALGDVISSLAT--KSGHIPYRNSKLTHLLQDSLGGDS 539
           R  KT  +G+RLKEA+NIN+SLSALG+VIS+L++  K  HIPYR+SKLT LLQDSLGG+S
Sbjct: 240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNS 299

Query: 540 KTLMFLQISPSEQDLGETLSSLNFASRVR 568
           KTLM   ISPS ++  ETLS+L FASR +
Sbjct: 300 KTLMIANISPSSENYDETLSTLRFASRAK 328

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score =  300 bits (771), Expect = 4e-95
 Identities = 137/321 (42%), Positives = 198/321 (61%), Gaps = 24/321 (7%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV-----------------DVFA 310
           NI+V CR RPL+++E   G   +V F       +                      DV+ 
Sbjct: 3   NIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYN 62

Query: 311 D-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT---QQNRGVNYRTLELLFKIAEERK 366
             A P+V  VL+GYN  IFAYGQTG+GKT+TMEG     + +G+  R +  +F+      
Sbjct: 63  FVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMD 122

Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWD 426
           E   + + VS LE+Y E+IRDLLD S  +  L++ +      +V GLTE  + + +EV +
Sbjct: 123 ENLEFHVKVSYLEIYMEKIRDLLDVSKDN--LQVHEDKNRGVYVKGLTERFVSSPEEVLE 180

Query: 427 VLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKT 486
           V++ G + RAV S N+NE SSRSH +  I++K +N+  G   + KL+LVDLAGSE+++KT
Sbjct: 181 VINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKVSKT 240

Query: 487 EVQGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDSLGGDSKTLMFL 545
             +G+ L+EA+ IN+SLSALG+VI++L   KS HIPYR+SKLT +LQDSLGG+S+T + +
Sbjct: 241 GAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLII 300

Query: 546 QISPSEQDLGETLSSLNFASR 566
             SPS  +  ETLS+L F +R
Sbjct: 301 CCSPSSYNESETLSTLRFGAR 321

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score =  299 bits (767), Expect = 3e-94
 Identities = 128/336 (38%), Positives = 185/336 (55%), Gaps = 36/336 (10%)

Query: 269 IRVFCRCRPLSKEEASAGHAMVVDFSAAK-------------DGELGILTV--DVFADA- 312
           +RV  R RPL  +E   G  + V     +             D      T   +V+    
Sbjct: 3   VRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTSQEEVYNTCV 62

Query: 313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT------QQNRGVNYRTLELLFKIAEERK 366
           +PLV  + +GYN  + AYGQTG+GKT+TM         ++  G+  R ++ +FK  +E+K
Sbjct: 63  APLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKK 122

Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKK-LEIRQASEGFHHVPGLTEAKIENIKEVW 425
           +   + + VS LE+YNE++RDLL  S + K  ++IR+ S+G   + GLTE  + + +EV 
Sbjct: 123 DEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVM 182

Query: 426 DVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN----------GECTKSKLWLV 475
             L  GS +R   S  +N  SSRSH +  I+++                     SK   V
Sbjct: 183 SCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFV 242

Query: 476 DLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKS---GHIPYRNSKLTHLLQ 532
           DLAGSERL KT   G+RLKE  +IN  L ALG+VIS+L  +S    H+PYR+SKLT LLQ
Sbjct: 243 DLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQ 302

Query: 533 DSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           DSLGG+S TLM   +SP++ +  ETL++L +A+R R
Sbjct: 303 DSLGGNSHTLMIACVSPADSNFEETLNTLKYANRAR 338

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score =  287 bits (737), Expect = 5e-90
 Identities = 143/332 (43%), Positives = 196/332 (59%), Gaps = 37/332 (11%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVD-------------------------FSAAKDGELG 302
           N++V  RCRPL+K E S G   +V                          F A  D    
Sbjct: 2   NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPN-- 59

Query: 303 ILTVDVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ---QNRGVNYRTLELL 358
               DV+ + A PLV SVL+GYN  IFAYGQTGTGKTFTMEG +   + RG+   +   +
Sbjct: 60  STQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHI 119

Query: 359 FKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKI 418
           F     + E   + + VS LE+YNE++RDLL      KKLE+++  +   +V  L+   +
Sbjct: 120 FGHIA-KAENVQFLVRVSYLEIYNEEVRDLL-GKDQKKKLELKERPDRGVYVKDLSMFVV 177

Query: 419 ENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING--ECTK-SKLWLV 475
           +N +E+  ++ +G+  R+VG+ N+NE SSRSH +  I+++            +  KL LV
Sbjct: 178 KNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLV 237

Query: 476 DLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDS 534
           DLAGSER +KT   G+RLKEA  IN SLSALG+VIS+L   KS HIPYR+SKLT LLQDS
Sbjct: 238 DLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 297

Query: 535 LGGDSKTLMFLQISPSEQDLGETLSSLNFASR 566
           LGG+SKT+M   I P++ +  ETLS+L +A+R
Sbjct: 298 LGGNSKTVMCANIGPADYNYDETLSTLRYANR 329

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score =  280 bits (719), Expect = 3e-87
 Identities = 135/336 (40%), Positives = 187/336 (55%), Gaps = 39/336 (11%)

Query: 268 NIRVFCRCRPLSKEEASAG----------HAMVVDFSAAKDGELGIL---TVD------- 307
           ++ V  R RP +++E   G            +V D    +D    +      +       
Sbjct: 1   SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDR 60

Query: 308 VFADAS-----------PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLE 356
           VF + S           PLV  VL+GYN  +FAYG TG GKT TM GT  + G+   T++
Sbjct: 61  VFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMK 120

Query: 357 LLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEA 416
            LF   EERK+   + +S+S LE+YNE IRDLL  SP+S  LE+R+       V GLTE 
Sbjct: 121 DLFDKIEERKDDKEFEVSLSYLEIYNETIRDLL--SPSSGPLELREDPNQGIVVAGLTEH 178

Query: 417 KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL---INGECTKSKLW 473
           + ++ +E+ ++L  G+  R       N  SSRSH +L I+V+ K+    IN +    KL 
Sbjct: 179 QPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLS 238

Query: 474 LVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLTHL 530
           L+DLAGSER + T  +G+RLKE  NINRSL ALG+ I++L        HIPYR+SKLT L
Sbjct: 239 LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRL 298

Query: 531 LQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASR 566
           L+DSLGG+ KT+M   ISPS     ET ++L +A+R
Sbjct: 299 LKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANR 334

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score =  269 bits (689), Expect = 1e-82
 Identities = 125/348 (35%), Positives = 191/348 (54%), Gaps = 47/348 (13%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK-----DGELGILT---------------- 305
            N++V  R RP +  E + G   +V                                   
Sbjct: 1   ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHD 60

Query: 306 ---------VDVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTL 355
                     DVF D    L+    +GYNVC+FAYGQTG+GK++TM G ++ +G+  R  
Sbjct: 61  SEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLC 120

Query: 356 ELLFK-IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-KLEIRQ-ASEGFHHVPG 412
           E LF+ I  ++++  +Y + VS +E+YNE++RDLL+    +K  L++R+    G + V  
Sbjct: 121 EELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPY-VED 179

Query: 413 LTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL---INGECTK 469
           L++  + + +++ ++L  G+ +R   S N+N+ SSRSH +  I +  K L    +    K
Sbjct: 180 LSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEK 239

Query: 470 -SKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA--------TKSGHI 520
            SK+ LVDLAGSER + T  +G+RLKE  NIN+SL+ LG VIS+LA         KS  I
Sbjct: 240 VSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFI 299

Query: 521 PYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           PYR+S LT LL+++LGG+SKT M   ISP++ +  ETLS+L +A R +
Sbjct: 300 PYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAK 347

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score =  251 bits (644), Expect = 1e-76
 Identities = 127/324 (39%), Positives = 175/324 (54%), Gaps = 32/324 (9%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGEL--------GILTVD-VFADAS----- 313
            I+V  R RPL+  E+       V +S   D  +           T D VF   S     
Sbjct: 1   KIKVSVRVRPLNPRESDNEQ---VAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREV 57

Query: 314 ------PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKE 367
                 P+V S L+GYN  IFAYGQT +GKTFTM G +Q  G+    +  +F+  ++  +
Sbjct: 58  YERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPD 117

Query: 368 TFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDV 427
              + + VS LE+YNE+I+DLL  SP+ ++L IR+       V GLTE  + + + +  +
Sbjct: 118 R-EFLLRVSYLEIYNEKIKDLL--SPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQL 174

Query: 428 LHIGSNARAVGSNNVNEHSSRSHC---MLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
           +  G   R VG  + NE SSRSH    +   S +  +  +G    S L L+DLAGSER A
Sbjct: 175 IARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSER-A 233

Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSL--ATKSGHIPYRNSKLTHLLQDSLGGDSKTL 542
                GER KE   IN+SL  LG VIS L     SGHIPYR+SKLT +LQ SL G+++T 
Sbjct: 234 SQTGAGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTA 293

Query: 543 MFLQISPSEQDLGETLSSLNFASR 566
           +   ISP+   + ETL++L FASR
Sbjct: 294 IICTISPASSHVEETLNTLKFASR 317

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score =  252 bits (645), Expect = 2e-76
 Identities = 134/341 (39%), Positives = 183/341 (53%), Gaps = 46/341 (13%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILT---------------------- 305
           NI+V  RCRP +  E     ++VV+ S +   E+ + T                      
Sbjct: 3   NIQVVVRCRPRNSRERKEKSSVVVEVSGSSK-EIIVSTGGADKQSTKTYTFDKVFGPEAD 61

Query: 306 -VDVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
            ++V++   SP++  VL GYN  IFAYGQTGTGKT+TMEG + +            G+  
Sbjct: 62  QIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIP 121

Query: 353 RTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLL-DTSPTSKKLEI---RQASEGFH 408
           R L  LF+  E +     YS+ VS LE+YNE++ DLL   S  +K L I        G  
Sbjct: 122 RALYQLFEKLESQNTE--YSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVV 179

Query: 409 HVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHC--MLCISVKAKNLINGE 466
            + GL E  + N  E   +L  GS  R   +  +N+ SSRSH    + I +K   +   E
Sbjct: 180 -IQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEE 238

Query: 467 CTK-SKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
             K  KL LVDLAGSE + ++  + +R +EA NIN+SL  LG VI++L  KS HIPYR S
Sbjct: 239 LVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRES 298

Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASR 566
           KLT LLQDSLGG +KT +   ISP+  +L ETLS+L +A R
Sbjct: 299 KLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHR 339

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score =  247 bits (633), Expect = 5e-75
 Identities = 126/267 (47%), Positives = 172/267 (64%), Gaps = 11/267 (4%)

Query: 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TQQNRGVNYRTLELLFKIAEERKET 368
           A P+V S LDGYN  IFAYGQTG GKTFTM G   + ++RG+  R LE +F+    R  T
Sbjct: 69  AKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA-T 127

Query: 369 FTYSISVSALEVYNEQIRDLLDTSP----TSKKLEIRQASEGFHHVPGLTEAKIENIKEV 424
            TY++ VS LE+YNEQ+ DLL  +P    +   + I + SE   HV GL+       +E 
Sbjct: 128 KTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEA 187

Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECT--KSKLWLVDLAGSER 482
            ++L +G   R +   ++N+ SSRSHC+  I +++++   G      SKL LVDLAGSER
Sbjct: 188 LNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSER 247

Query: 483 LAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG-HIPYRNSKLTHLLQDSLGGDSKT 541
           ++KT V G+ LKEA+ IN+SLS L  VI++L+ K+  H+PYRNSKLTH+L+DSLGG+ KT
Sbjct: 248 VSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKT 307

Query: 542 LMFLQISPSEQDLGETLSSLNFASRVR 568
           +M   I     +L ETLS+L FA RV 
Sbjct: 308 VMLATIWVEPSNLDETLSTLRFAQRVA 334

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score =  240 bits (614), Expect = 3e-72
 Identities = 135/337 (40%), Positives = 182/337 (54%), Gaps = 39/337 (11%)

Query: 268 NIRVFCRCRPLSKEEASAGH--AMVVDFSAAK------------DGELGILTV--DVFAD 311
            ++V  R RP ++ EA  G    +    S               D      T   DVF  
Sbjct: 2   AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTNQEDVFQS 61

Query: 312 -ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG--------TQQNRGVNYRTLELLF--- 359
              PLV   L GYN  IFAYGQTG+GKT+TM G            +GV  R  E LF   
Sbjct: 62  VGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLI 121

Query: 360 -KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQ-ASEGFHHVPGLTEAK 417
            +  E+R +   +    S LE+YNEQI DLLD  PTS+ L+IR+   +G + V  LTE  
Sbjct: 122 QREEEKRGDGLKFLCKCSFLEIYNEQITDLLD--PTSRNLKIREDIKKGVY-VENLTEEY 178

Query: 418 IENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTK--SKLWLV 475
           + + ++V+ VL  G + R V + ++N  SSRSH +   ++++            S+L LV
Sbjct: 179 VSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLV 238

Query: 476 DLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA----TKSGHIPYRNSKLTHLL 531
           DLAGSER      +G RLKEA+NIN+SLS LG VI +L      K  H+PYR+SKLT LL
Sbjct: 239 DLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLL 298

Query: 532 QDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           +DSLGG++KT +   +SPS +  GETLS+L FA R +
Sbjct: 299 RDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAK 335

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score =  224 bits (572), Expect = 2e-66
 Identities = 110/263 (41%), Positives = 152/263 (57%), Gaps = 7/263 (2%)

Query: 307 DVF-ADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER 365
           D+F  +  P+V  +L G N  +FAYG TG GKT TM G     G+  RTL  L ++   R
Sbjct: 63  DIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMG--R 120

Query: 366 KETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVW 425
           K+ +T + S+S  E+YNE++ DLL+  P  K+L IR+  +G   + GLT   I+++ E  
Sbjct: 121 KQAWTGAFSMSYYEIYNEKVYDLLE--PAKKELPIREDKDGNILIVGLTSKPIKSMAEFE 178

Query: 426 DVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAK 485
           +     S  R V +  +N++SSRSH +L I V           + KL L+DLAGSE   +
Sbjct: 179 EAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN--IQLEGKLNLIDLAGSEDNRR 236

Query: 486 TEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFL 545
           T  +G RLKE+  IN SL  L  V+ +L      IPYR SKLT LLQDSLGG S+ +M  
Sbjct: 237 TGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVA 296

Query: 546 QISPSEQDLGETLSSLNFASRVR 568
            I+P      +TLS+LNFASR +
Sbjct: 297 NIAPERSFYQDTLSTLNFASRSK 319

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score =  229 bits (586), Expect = 1e-65
 Identities = 144/421 (34%), Positives = 223/421 (52%), Gaps = 20/421 (4%)

Query: 311 DASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFT 370
              PL+ S+L GYN  +FAYGQTG+GKT+TM GT++  G+   +L+ LF   E+   T  
Sbjct: 77  TIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKD 136

Query: 371 YSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHI 430
           +++S+S LE+YNE+I DLL  +  S    IR+ S     V GLTE  + + +E+ D+L  
Sbjct: 137 FAVSISYLEIYNEKIYDLLSPNEESLN--IREDSLLGVKVAGLTEKHVSSKEEILDLLRK 194

Query: 431 GSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQG 490
           G   R   S  +N+ SSRSH +  I + +KN ++G    SKL LVDLAGSER A+T  +G
Sbjct: 195 GEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRG 254

Query: 491 ERLKEAQNINRSLSALGDVISSL--ATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQIS 548
            RLKE  +IN+SL  LG+VI++L    KSGHIPYR SKLT LLQDSLGG+  T +   IS
Sbjct: 255 TRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTIS 314

Query: 549 PSEQDLGETLSSLNFASRVRGVELSPARKQIDIS--KLQKVKMMLEKTKQEVGSKDDVIQ 606
           PS     ET+++L FASR + ++          S  +++++K  L + + E+       Q
Sbjct: 315 PSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQ 374

Query: 607 KLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVS--EGMKGK 664
                     + A       ++ +++   L+S+++   +       +  ++   EG K K
Sbjct: 375 SQLSQSSLSGIFAYM-----QSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYK 429

Query: 665 EEICSN---VQRKVKELENKLKEHDQSENV-TALHHKVRELENRL---KARTQEFEVHSG 717
             +      + R +   E +L +     +    L H +  L + +    +   E E  S 
Sbjct: 430 STLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESEKASK 489

Query: 718 M 718
           +
Sbjct: 490 L 490

Length = 568

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score =  213 bits (545), Expect = 2e-62
 Identities = 120/345 (34%), Positives = 175/345 (50%), Gaps = 55/345 (15%)

Query: 269 IRVFCRCRPLSKEE---ASAGHAMVVDF----------SAAKDGELGILTV--------- 306
           ++V+ R RPLSK+E      G   V++           SAA+  E               
Sbjct: 3   VKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKV 62

Query: 307 --------DVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEL 357
                   + F   A PLV  +L G N  +F YG T +GKT+TM+G+  + G+  R+L++
Sbjct: 63  FGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDV 122

Query: 358 LFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTS----KKLEIRQASEGFHHVPGL 413
           +F           YS+ VS +E+YN  I DLL+ SP+S    + L +R+   G  +V GL
Sbjct: 123 IFNSIGG------YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGL 176

Query: 414 TEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCIS-VKAKNLINGECTK--- 469
           TE ++ + +E  +V   G   R V    +N  SSRSH +  I  V+A    +G+  +   
Sbjct: 177 TEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKD 236

Query: 470 ----SKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSL------ATKSGH 519
               S+L LVDLAGSER ++T+  GERLKEA NIN SL  LG  I  L       + +  
Sbjct: 237 QITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKM 296

Query: 520 IPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFA 564
           +PYR+SKLTHL Q+   G+ K  M + ++P   D  ETL  + F+
Sbjct: 297 VPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFS 341

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score =  203 bits (519), Expect = 6e-59
 Identities = 112/331 (33%), Positives = 166/331 (50%), Gaps = 40/331 (12%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMV-----------------VDFSAAKDGELGILTVD-VF 309
            I V  R RPL+ +E S G   V                 VD +   +        D VF
Sbjct: 2   KITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHT--FRFDYVF 59

Query: 310 ADAS-----------PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELL 358
            +A            PL+  V +G     FAYGQTG+GKT+TM G +   G+       +
Sbjct: 60  DEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDI 119

Query: 359 FKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKI 418
           F++    +      ++VS  E+Y  ++ DLL+     K+L + +  +G   + GLTE  +
Sbjct: 120 FRLLA--QPNDDLGVTVSFFEIYGGKLFDLLNDR---KRLSVLEDGKGNVQIVGLTEKPV 174

Query: 419 ENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLA 478
            ++ E+ +++  G++ R  GS   N+ SSRSH +L I +K K L        KL  +DLA
Sbjct: 175 TSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDLA 231

Query: 479 GSERLAKTEVQG-ERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGG 537
           GSER A T     +  KE   IN+SL AL + I +LA+   H+P+R SKLT +L+DS  G
Sbjct: 232 GSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIG 291

Query: 538 DSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           +SKT+M   ISPS      TL++L +A RV+
Sbjct: 292 NSKTVMIATISPSASSCEHTLNTLRYADRVK 322

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score =  212 bits (542), Expect = 5e-57
 Identities = 147/391 (37%), Positives = 209/391 (53%), Gaps = 57/391 (14%)

Query: 269 IRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELG-ILTVDVFADA------------SPL 315
           ++V  R +PL+K E   G  +V   S       G   T D  AD             +PL
Sbjct: 100 VKVIVRMKPLNKGEE--GEMIVQKMSNDSLTINGQTFTFDSIADPESTQEDIFQLVGAPL 157

Query: 316 VTSVLDGYNVCIFAYGQTGTGKTFTMEG----------TQQNRGVNYRTLELLF-KIAEE 364
           V + L G+N  +FAYGQTG+GKT+TM G          +   +G+  R  E LF +I EE
Sbjct: 158 VENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEE 217

Query: 365 R----KETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIEN 420
           +         Y    S LE+YNEQI DLLD  P+ K L+IR+  +   +V  LTE  ++ 
Sbjct: 218 QIKHADRQLKYQCRCSFLEIYNEQITDLLD--PSQKNLQIREDVKSGVYVENLTEEYVKT 275

Query: 421 IKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKA--KNLINGECT--KSKLWLVD 476
           +K+V  +L  G + R  G+ ++N  SSRSH +    V++  K++ +G  +   S++ LVD
Sbjct: 276 MKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVD 335

Query: 477 LAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-----KSGHIPYRNSKLTHLL 531
           LAGSER   T   G+RLKEA NINRSLS LG++I+ LA      K  HIPYR+S+LT LL
Sbjct: 336 LAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLL 395

Query: 532 QDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMML 591
           Q+SLGG++K  M   ISPS+    ET S+L FA R + +              +   ++ 
Sbjct: 396 QESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAI--------------KNKAVVN 441

Query: 592 EKTKQEVGSKDDVIQKLEENFQNLEVKAKGN 622
           E  + +V    +VI++L +  Q   VKA GN
Sbjct: 442 EVMQDDVNFLREVIRQLRDELQ--RVKANGN 470

Length = 1320

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score =  145 bits (367), Expect = 6e-40
 Identities = 66/132 (50%), Positives = 86/132 (65%), Gaps = 3/132 (2%)

Query: 421 IKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKN-LINGECTKS--KLWLVDL 477
           + +V D++  G+  R   +  +NEHSSRSH +  I    KN L +        K+ LVDL
Sbjct: 55  VTDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDL 114

Query: 478 AGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGG 537
           AGSER+  +  +G RL E  NIN+SLS LG+VIS+LA +  H+PYR SKLT LLQDSLGG
Sbjct: 115 AGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGG 174

Query: 538 DSKTLMFLQISP 549
           +S+TLM   ISP
Sbjct: 175 NSRTLMVACISP 186

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

>gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 14/113 (12%)

Query: 4   LYQSARFG--NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDI 61
           LYQ+ R+   +FSY I  L  G+Y V LHFAEI       G RVFDV++Q + VL + DI
Sbjct: 52  LYQTERYSPSSFSYYIPCLENGNYTVILHFAEIYFGEDGLGRRVFDVYVQGKLVLKDFDI 111

Query: 62  YSIVG-ANKPLQVVDVRVSV--GMDEV---------LLIRFDGACGSPIVNGI 102
            +  G   K      + V+V  G  E+         LLI F G  G+P ++ I
Sbjct: 112 VAEAGGKGKTAHKEYIPVTVTDGTLEIHFYWAGKGTLLIPFRGVYGNPKISAI 164

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. Length = 164

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score = 76.8 bits (189), Expect = 5e-16
 Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 30/96 (31%)

Query: 271 VFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAY 330
           V  R RP                              VF D  PL+ S LDGYNVCIFAY
Sbjct: 1   VCVRVRP------------------------------VFRDVGPLLQSALDGYNVCIFAY 30

Query: 331 GQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
           GQTG+GKT+TMEG ++  G+  RT+  +  + ++  
Sbjct: 31  GQTGSGKTYTMEGKREGAGIIPRTVTDVIDLMDKGN 66

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.1 bits (133), Expect = 1e-07
 Identities = 35/145 (24%), Positives = 75/145 (51%), Gaps = 2/145 (1%)

Query: 591 LEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQL 650
           LE+ ++E+   +  I++L+   + L  + +   +     +E+I ELE ++    +   +L
Sbjct: 255 LEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEEL 314

Query: 651 EKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQ 710
           E +L ++ E ++  +E    ++ +++E E  L+E +Q   +  L     ELE +L A  +
Sbjct: 315 ENELEELEERLEELKEKIEALKEELEERETLLEELEQ--LLAELEEAKEELEEKLSALLE 372

Query: 711 EFEVHSGMLQQKIAELEEKLRKKEE 735
           E E     L++++AELE +L +   
Sbjct: 373 ELEELFEALREELAELEAELAEIRN 397

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 53.9 bits (130), Expect = 3e-07
 Identities = 35/153 (22%), Positives = 79/153 (51%), Gaps = 4/153 (2%)

Query: 583 KLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLES 642
            +++ +  LE+  +E+      + +L E  + LE      V+  +  +E+I ELE +LES
Sbjct: 194 LIKEKEKELEEVLREINEISSELPELREELEKLE----KEVKELEELKEEIEELEKELES 249

Query: 643 KTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELE 702
                R+LE+++ ++ E ++  ++    ++ KVKEL+   ++ ++   ++  + +  +  
Sbjct: 250 LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDEL 309

Query: 703 NRLKARTQEFEVHSGMLQQKIAELEEKLRKKEE 735
             ++ R    E     ++++I ELEEK  + EE
Sbjct: 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEE 342

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 5e-06
 Identities = 52/266 (19%), Positives = 108/266 (40%), Gaps = 22/266 (8%)

Query: 480 SERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDS 539
            E     E   +  KE + ++R +SAL   ++ L  +   +  R ++L+  L +      
Sbjct: 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA--- 761

Query: 540 KTLMFLQISPSEQDLGETLSSLNFASRVRG-----VELSPARKQIDISKLQKVKMMLEKT 594
                 +I   E+ L E    L  A          +E      +     L +++  L   
Sbjct: 762 ------EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL 815

Query: 595 KQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQL 654
            +E  +  + ++ LE      E + +   +  +   E I  L +++E   +L  +LE +L
Sbjct: 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875

Query: 655 LQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEV 714
             +       EE  + ++ +++EL  +L+E +     + L  ++ EL  +L     + E+
Sbjct: 876 EALLNERASLEEALALLRSELEELSEELRELES--KRSELRRELEELREKLA----QLEL 929

Query: 715 HSGMLQQKIAELEEKLRKKEEYATAY 740
               L+ +I  L+E+L   EEY+   
Sbjct: 930 RLEGLEVRIDNLQERLS--EEYSLTL 953

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 27/273 (9%)

Query: 253 VPQLNKMVSTIQVLGNIRVFCRCRPLSKEEASAG-----HAMVVDFSAAKDGELGILTVD 307
            P  N    TI  L         +   +  +S+        +  D S  +      + + 
Sbjct: 314 SPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSE----IEIL 369

Query: 308 VFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKE 367
           VF + S L  S L G    IFAY Q+   +T T++   +   +    +   F+  +  KE
Sbjct: 370 VFREQSQLSQSSLSG----IFAYMQSLKKETETLK--SRIDLIMKSIISGTFERKKLLKE 423

Query: 368 TF-TYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWD 426
               Y  ++  L +  +++  L +   + KK +I + ++  H +  L  +  E   +  +
Sbjct: 424 EGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVE 483

Query: 427 VLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK---LWLVDLAGSERL 483
                   R+  S  +N  SSRSH          + +NG  + +K   L  VDLAGSER 
Sbjct: 484 SEKASKL-RSSASTKLNLRSSRSHSKFR------DHLNGSNSSTKELSLNQVDLAGSERK 536

Query: 484 AKTEVQGERLKEAQNINRSLSALGDVISSLATK 516
             ++  GE L+E Q++N+SLS+LGDVI +L +K
Sbjct: 537 V-SQSVGELLRETQSLNKSLSSLGDVIHALGSK 568

Length = 568

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 4e-05
 Identities = 40/181 (22%), Positives = 82/181 (45%), Gaps = 26/181 (14%)

Query: 571 ELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQ 630
           EL      + ++KL++++  LE+ ++E+   ++ +++L+E  +  E              
Sbjct: 221 ELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAE-------------- 266

Query: 631 EKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEH----- 685
           ++I EL+S+LE   +   +L+++LL++ E ++  E   S ++ +++ELEN+L+E      
Sbjct: 267 KEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLE 326

Query: 686 -------DQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYAT 738
                     E +      + ELE  L    +  E     L   + ELEE      E   
Sbjct: 327 ELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386

Query: 739 A 739
            
Sbjct: 387 E 387

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 6e-05
 Identities = 44/203 (21%), Positives = 93/203 (45%), Gaps = 40/203 (19%)

Query: 546 QISPSEQDLGETLSSLNFASRVRGVELSPARKQI--DISKLQKVKMMLEKTKQEVGSKDD 603
            I   E++L E L  +N        E+S    ++  ++ KL+K    LE+ K+E+   + 
Sbjct: 194 LIKEKEKELEEVLREIN--------EISSELPELREELEKLEKEVKELEELKEEIEELEK 245

Query: 604 VIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQ------LESKTQLCRQLEKQLLQV 657
            ++ LE + + LE K +   +  +  +++I ELE +      L+ K +   +L +   + 
Sbjct: 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEY 305

Query: 658 SEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSG 717
            + ++  E+  S ++ ++  +E ++KE ++ E       ++ EL+ +LK           
Sbjct: 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEE------RLEELKKKLK----------- 348

Query: 718 MLQQKIAELEEKLRKKEEYATAY 740
                  ELE++L + EE    Y
Sbjct: 349 -------ELEKRLEELEERHELY 364

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 9e-05
 Identities = 42/196 (21%), Positives = 100/196 (51%), Gaps = 7/196 (3%)

Query: 582 SKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLE 641
            ++++++   +  ++E+   ++ +++ E     LE + +   Q  +  +++I ELE ++E
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838

Query: 642 SKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVREL 701
              +   +LE++L ++ + ++  +E    ++ + +ELE++LKE ++ +    L  ++REL
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE--LEEELREL 896

Query: 702 ENRL---KARTQEFEVHSGMLQQKIAELEEKLRKKEEYATAYCFREMPVTTPYNATVSRV 758
           E+ L   K   ++       L+ K+  LE +L + EE        E  + T     + R+
Sbjct: 897 ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEY--EDTLETELEREIERL 954

Query: 759 ETTIDDMDPPSLRILN 774
           E  I+ + P +LR + 
Sbjct: 955 EEEIEALGPVNLRAIE 970

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 39/173 (22%), Positives = 94/173 (54%), Gaps = 16/173 (9%)

Query: 582 SKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQL- 640
            + ++ +  LE+T++ +   +D++++LE+  + LE +A+   +  +  + ++ ELE  L 
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAE-KAERYQELKAELRELELALL 230

Query: 641 -----ESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKE-----HDQSEN 690
                E + +L  +LE++L ++ E ++  +E     +++++EL+++L+E      +  E 
Sbjct: 231 LAKLKELRKEL-EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289

Query: 691 VTALHHKVRELE---NRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYATAY 740
           +  L  ++ ELE   + L+ R +E E     L++++ EL+EK+   +E     
Sbjct: 290 LLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER 342

Length = 1163

>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 21/142 (14%), Positives = 61/142 (42%), Gaps = 17/142 (11%)

Query: 582 SKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLE 641
             L + K  L+K  Q++    + I   E                 K+   ++ +L  +  
Sbjct: 230 KSLPETKQYLKKLSQDLSKALEKISSRE-----------------KHLNNQLEQLVQEYR 272

Query: 642 SKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVREL 701
              +   Q++++  Q S+G+       + +  ++++++ +++E   S +  +   K+++ 
Sbjct: 273 EARRTLSQVQEKYNQASQGVSELTRELNEISEELEQVKQEMEERGASMSDGSPLVKIKQA 332

Query: 702 ENRLKARTQEFEVHSGMLQQKI 723
             +LK   ++ ++  G+LQ  +
Sbjct: 333 ITKLKEEIKQMDLRIGVLQHTL 354

Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bidirectional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated. This protein is known as Huntington-interacting protein-1 in humans. Length = 355

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 44.8 bits (107), Expect = 2e-04
 Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 576 RKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKI-N 634
           R  +  + +++ K ++ + K+++   +++I  LEE  + LE KA+   +    + EK+  
Sbjct: 496 RLGLPENIIEEAKKLIGEDKEKL---NELIASLEELERELEQKAE-EAEALLKEAEKLKE 551

Query: 635 ELESQLES----KTQLCRQLEKQLLQ-VSEGMKGKEEICSNVQRKVKELENKLKEHDQSE 689
           ELE + E     + +L  + EK+  Q + E  K  +EI   +++  K     +K H+  E
Sbjct: 552 ELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIE 611

Query: 690 NVTALHHKVRELENRLK-ARTQEFEVHSGM------LQQKIAELEEKLRKKE 734
               L+    + E + K  + ++ E+  G       L QK  E+      KE
Sbjct: 612 ARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK-GEVLSIPDDKE 662

Length = 782

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 47/212 (22%), Positives = 90/212 (42%), Gaps = 33/212 (15%)

Query: 551 EQDLGETLSSLNFASRVRGVELSPARKQIDI--SKLQKVKMMLEKTKQEVGSKDDVIQKL 608
           E +L   +S L    R    +L   +K+ D+  +KL  +    +K KQ + S +  ++  
Sbjct: 429 ESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSE 488

Query: 609 EENFQNLEVKAKGNVQLCKNQQEK--------INELESQLESKTQLCRQLEKQLLQVSEG 660
            ++  N E +     +  K ++E             E   ES  Q  + LE ++ ++   
Sbjct: 489 ADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHD 548

Query: 661 MKGKEEICSNVQRKVKELENKLKEHDQSENV-----TALHHKVRELENRLKART------ 709
           +K KEE C  ++++ +EL  K +E ++   V      A+  K   LEN L A T      
Sbjct: 549 LKLKEEECRMLEKEAQELR-KYQESEKETEVLMSALQAMQDKNLMLENSLSAETRLKLDL 607

Query: 710 --------QEFEVHSGMLQQK---IAELEEKL 730
                   ++ E+  G + ++   I +L+ K+
Sbjct: 608 FSALGDVKRQLEIAHGAIYKREAEIVDLKSKI 639

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 32/163 (19%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 575 ARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKIN 634
            R+ +     Q +  + E  ++       ++++LEE F+ L  +           + ++ 
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELE 400

Query: 635 ELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTAL 694
           EL+ ++ES  +   +L ++L  + E +K  E     +Q +++EL  +L+E    E +  L
Sbjct: 401 ELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEE--LEEQLEEL 458

Query: 695 HHKVRELENRL-KARTQEFEVHSGM--LQQKIAELEEKLRKKE 734
             +++ELE  L + + +   +   +  L+ ++  LE + R  +
Sbjct: 459 RDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 46/186 (24%), Positives = 95/186 (51%), Gaps = 31/186 (16%)

Query: 571 ELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQ- 629
           EL  A+++I+  ++ K+   + + K+E+      I++L+        KAKG   +C  + 
Sbjct: 395 ELEKAKEEIE-EEISKITARIGELKKEIKELKKAIEELK--------KAKGKCPVCGREL 445

Query: 630 ------------QEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSN--VQRKV 675
                         ++  +E +L+   +  R+L K+L ++ + +K + E+     +  ++
Sbjct: 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQL 505

Query: 676 KELENKLKEHD------QSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEK 729
           KELE KLK+++      ++E    L  K+ +L+  +K+  +E E     L++K+AELE+K
Sbjct: 506 KELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-LKKKLAELEKK 564

Query: 730 LRKKEE 735
           L + EE
Sbjct: 565 LDELEE 570

Length = 880

>gnl|CDD|221790 pfam12819, Malectin_like, Carbohydrate-binding protein of the ER

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 17/112 (15%)

Query: 1   MAVLYQSARFG-------NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEE 53
            AV  Q+A          NF++ + + +  +Y V LHFAEI +       R FD+++  +
Sbjct: 226 SAV-LQTAVTPTNASAPLNFTWDLVDPNF-EYYVYLHFAEIQSL----ETREFDIYINGK 279

Query: 54  KVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFDGACGS---PIVNGI 102
            V  ++    +      L  +D  V+V    +L I      GS   P++N +
Sbjct: 280 TVYGDVSPKYLGTDTGAL-YLDFPVNVSGGGLLNISLVPTSGSTLPPLLNAL 330

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. Length = 335

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 5e-04
 Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 8/151 (5%)

Query: 593 KTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEK 652
           + K+   ++   +++LEE    LE + +   +  K+ + ++  LE  LE   +   +LE+
Sbjct: 657 RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716

Query: 653 QLLQVSEGMKGKEEICSNVQRKVKELENKLKEH--------DQSENVTALHHKVRELENR 704
           QL ++   +   EE    +Q +++ELE +L+E         ++ E +      + E   +
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 705 LKARTQEFEVHSGMLQQKIAELEEKLRKKEE 735
           LK   +E E     LQ+++ ELEE+L + E 
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAER 807

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.6 bits (103), Expect = 5e-04
 Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 546 QISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKM-MLEKTKQEVGSKDDV 604
           +I   E+ L E          ++   L     +++  K+++ ++  LE+  +E+  K + 
Sbjct: 233 EIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIER 292

Query: 605 IQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGK 664
           +++LE   + LE + +G   L +  +E + +L+S  E   +L  +LEK   ++ E  + K
Sbjct: 293 LEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEK 352

Query: 665 EEICSNVQRKVKELENKLKE-----HDQSENVTALHHKVRELENRLKARTQEFEVHSGML 719
            E+   ++ ++KELE +L+E         E +  L   ++EL+  L   +   E     L
Sbjct: 353 NELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEEL 412

Query: 720 QQKIAELEEKLRKKEEYATAYCFRE 744
           ++   ELEE  R+ EE        E
Sbjct: 413 EELEKELEELERELEELEEEIKKLE 437

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.1 bits (102), Expect = 6e-04
 Identities = 38/145 (26%), Positives = 76/145 (52%), Gaps = 13/145 (8%)

Query: 603 DVIQKLEENFQNLE--VKAKGNVQ-LCKNQQEKINELESQLESKTQLCRQLEKQLLQVSE 659
           +VI++++   + LE  +K   N++ L K +++++ E+  ++   +    +L ++L ++ +
Sbjct: 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK 228

Query: 660 GMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGML 719
            +K  EE+   ++   KELE+         +   L  K+RELE R++   +E E     L
Sbjct: 229 EVKELEELKEEIEELEKELESLEG------SKRKLEEKIRELEERIEELKKEIEE----L 278

Query: 720 QQKIAELEEKLRKKEEYATAYCFRE 744
           ++K+ EL+E   K EEY     F E
Sbjct: 279 EEKVKELKELKEKAEEYIKLSEFYE 303

Length = 880

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 6e-04
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 4   LYQSARFG-----NFSYRIGNLSPG-DYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLL 57
           LYQSA        + SY + ++ P  +Y V LHFAEI N+   +G RVFDV +  +    
Sbjct: 254 LYQSALVSTDTQPDLSYTM-DVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFK 312

Query: 58  EIDIYSIVG 66
           ++DI  + G
Sbjct: 313 DVDIVKMSG 321

Length = 623

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 7e-04
 Identities = 36/152 (23%), Positives = 82/152 (53%), Gaps = 13/152 (8%)

Query: 591 LEKTKQEVGSKDDVIQKLEENFQNLEVK---AKGNVQLCKNQQEKIN----ELESQLESK 643
           L++ ++E+   +  ++KLEE  ++L+ +    +  ++  + Q E++     EL+ +L + 
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL 728

Query: 644 TQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELEN 703
            +   QL+ +L ++ E ++  EE    +Q +++ELE +L+  +  E +  L  ++ ELE 
Sbjct: 729 EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE--EALAKLKEEIEELEE 786

Query: 704 RLKARTQEFEVHSGMLQQKIAELEEKLRKKEE 735
           + +A  +E E     L++++ E E +L   E 
Sbjct: 787 KRQALQEELE----ELEEELEEAERRLDALER 814

Length = 1163

>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 15/118 (12%)

Query: 622 NVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENK 681
           N++L K+ +E+I E++   E   +L  ++ ++  ++ E +K         + +V+EL  K
Sbjct: 25  NLELIKSLKEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLK-------KAEEEVEELRKK 77

Query: 682 LKEHDQ-SENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELE---EKLRKKEE 735
           LK++++  +++  L  +++ELE  LK    E EV    L+Q+  ++E   ++L  K E
Sbjct: 78  LKDYEKDKQSLKNLKARLKELEKELKNLKWESEV----LEQRFEKVERERDELYDKFE 131

This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localisation of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localised to regions of dynein regulation in mammalian cells. Length = 201

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 550 SEQDLGETLSSLNFASRVRGVELSPARKQIDI--SKLQKVKMMLEKTKQEVGSKDDVIQK 607
           S ++L E L  L        +EL  A K+++    +L+K++  L+K  +E+   +  +++
Sbjct: 586 SVEELEERLKELEPFYN-EYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEE 644

Query: 608 LEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEI 667
           L +  + LE K   + +  +  +E+  EL  +L        +LEK+  ++ + ++  +E 
Sbjct: 645 LRKELEELEKKY--SEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE 702

Query: 668 CSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKAR 708
               ++  KELE   K     E V  L  KV++ +  LK R
Sbjct: 703 LEEREKAKKELEKLEK---ALERVEELREKVKKYKALLKER 740

Length = 880

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 12/142 (8%)

Query: 631 EKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSEN 690
           E+I EL+  LE   +   +LE QL   ++ +   ++   ++Q+ ++E  +K ++    ++
Sbjct: 481 ERITELQQLLEDANRRNNELETQLRLANQRILELQQQVEDLQKALQEQGSKSEDSSLLKS 540

Query: 691 VTALH----HKVRELENRLKARTQEFEVH-SGMLQQKIAELEEKLRKKEEYATAYCFREM 745
               H    H+  E   + + + +E E      L +KIAELE  L+KK+E   A   R  
Sbjct: 541 KLEEHLEQLHEANEELQKKREQIEELEPDQDQNLSRKIAELEAALQKKDEDMRAMEER-- 598

Query: 746 PVTTPYNATVSRVETTIDDMDP 767
                Y   V +    I  +DP
Sbjct: 599 -----YKKYVEKAREVIKTLDP 615

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 34/165 (20%), Positives = 78/165 (47%), Gaps = 7/165 (4%)

Query: 571 ELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQ 630
           EL    +  +  + ++++  +E  ++ +   ++  ++LEE    L       ++  K ++
Sbjct: 214 ELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIRE 273

Query: 631 EKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSEN 690
           E++ ELE  LE   +   +LE+   ++ E ++ + E    +  +++EL  KLK     E 
Sbjct: 274 EELRELERLLEELEEKIERLEELEREIEE-LEEELEGLRALLEELEELLEKLKS--LEER 330

Query: 691 VTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEE 735
           +  L  K+ +LE+ L+    E       L + + E  ++L ++ E
Sbjct: 331 LEKLEEKLEKLESELE----ELAEEKNELAKLLEERLKELEERLE 371

Length = 908

>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812)

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 624 QLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK 683
              K ++ ++  L+ Q++       ++  ++  ++  +K   E  + V+++ +ELE + K
Sbjct: 263 DRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEEYK 322

Query: 684 EHDQS--------ENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKE 734
              ++         NV  L   V     RL    Q++E H   L  +   L+EK R KE
Sbjct: 323 IKKRTVELLPDAENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEYRSLKEKNRNKE 381

This family consists of several eukaryotic proteins of unknown function. Length = 536

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 35/162 (21%), Positives = 80/162 (49%), Gaps = 9/162 (5%)

Query: 582  SKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLE 641
             +L+++K  LE+ + E    +D +++LEE  + LE + +   +L     E   E+E   E
Sbjct: 856  KELEELKEELEELEAEKEELEDELKELEEEKEELEEELR---ELESELAELKEEIEKLRE 912

Query: 642  SKTQLCRQLEKQLLQVSEGMKGKEEICSN-----VQRKVKELENKLKEHDQ-SENVTALH 695
               +L  +LE+  +++ E  +  EE   +     ++R+++ LE +++     +      +
Sbjct: 913  RLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEY 972

Query: 696  HKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYA 737
             +V E    LK++ ++ E     L + I EL+++ R++ +  
Sbjct: 973  EEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKET 1014

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 42/163 (25%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 582 SKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLE 641
            ++ +++  +E+ ++E+ +  + I +LE+  Q L  +     +  +  + ++ ELES+L+
Sbjct: 274 LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333

Query: 642 SKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVREL 701
              +   +LE++L ++ E ++  E     ++ +++ELE++L+E +  E +  L  KV +L
Sbjct: 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE--EQLETLRSKVAQL 391

Query: 702 EN----------RLKARTQEFEVHSGMLQQKIAELEEKLRKKE 734
           E           RL+AR +  E     LQQ+I EL +KL + E
Sbjct: 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 23/141 (16%), Positives = 59/141 (41%), Gaps = 15/141 (10%)

Query: 603 DVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMK 662
             +++L E  + L+ + K   +  +    ++ ELE +LE       +L  ++ ++ E ++
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLE-------ELRLEVSELEEEIE 284

Query: 663 GKEEICSNVQRKVKELENKLKEHDQS--------ENVTALHHKVRELENRLKARTQEFEV 714
             ++    +  ++  LE + +   +         E + A   ++    + L     E E 
Sbjct: 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344

Query: 715 HSGMLQQKIAELEEKLRKKEE 735
               L++++  LE +L + E 
Sbjct: 345 KLEELKEELESLEAELEELEA 365

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 30/167 (17%), Positives = 74/167 (44%), Gaps = 14/167 (8%)

Query: 578 QIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKIN--- 634
           +  I +L+     L +  +++   + + ++L+E  +  E++ +   +  + + E +    
Sbjct: 184 KAKIEELEGQLSELLEDIEDL--LEALEEELKELKKLEEIQEEQEEEELEQEIEALEERL 241

Query: 635 -ELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKE-HDQSENVT 692
            ELE + E       +LE+   ++ E    + E     + +++ELE  L+E  ++ E + 
Sbjct: 242 AELEEEKE-------RLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLE 294

Query: 693 ALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYATA 739
            L  ++ ELE  L+      E    +L++  +  E   + +E+    
Sbjct: 295 ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKL 341

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 7/161 (4%)

Query: 581 ISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQL 640
           + K  +    LE+  QE+  +   +    E  Q    + +  ++  + + E++ E   +L
Sbjct: 377 LEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKL 436

Query: 641 ESKTQLCRQLEKQLLQVSEGMKGKEEICSN------VQRKVKELENKLKEHDQSENVTAL 694
           E +       E  + ++  G   K  +C         +  ++  E +L+E ++  +    
Sbjct: 437 EEQINQLESKELMIAEL-AGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKE 495

Query: 695 HHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEE 735
             ++RE    L+   +E E     L +    L+E+L +K E
Sbjct: 496 EAELREEIEELEKELRELEEELIELLELEEALKEELEEKLE 536

Length = 908

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 14/157 (8%)

Query: 582 SKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLE 641
            K Q+    LEK K E+  K++ I+ L+ N   L        +  + Q     + E   +
Sbjct: 323 QKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELH-------KQLRKQGISTEQFELMNQ 375

Query: 642 SKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQS-ENVT----ALHH 696
            + +L R+L+K  +Q  +  K  +      Q   K LE  L+++D   +N+T     + H
Sbjct: 376 EREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGH 435

Query: 697 KVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKK 733
            V +   ++    Q F   SG+  + I +   +L  +
Sbjct: 436 NVNDSSLKINIE-QLFPKGSGI-NESIKKSILELNDE 470

Length = 622

>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 18/107 (16%)

Query: 600 SKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSE 659
            KD+V + ++E        A+ N    K ++EKI +L++Q ES   LC Q EKQL ++  
Sbjct: 503 PKDEVERMVKE--------AEKNAAEDKEKREKI-DLKNQAES---LCYQAEKQLKEL-- 548

Query: 660 GMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLK 706
               K++I    + K++ L  KL++  Q++N  ++   + EL+  L 
Sbjct: 549 ----KDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKALM 591

Length = 621

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 59/257 (22%), Positives = 108/257 (42%), Gaps = 25/257 (9%)

Query: 487 EVQGERLKEAQNINRSLS-ALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFL 545
           E   ERL+E +    SL   + +V S L      I      L H L+++L         L
Sbjct: 733 EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL-HKLEEALND-------L 784

Query: 546 QISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVI 605
           +   S   + E  + L+        +L     +I+ ++L++++  L +   E    +  I
Sbjct: 785 EARLSHSRIPEIQAELS--------KLEEEVSRIE-ARLREIEQKLNRLTLEKEYLEKEI 835

Query: 606 QKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKE 665
           Q+L+E   +L+ + K   +  +N   K  ELE +LE      R LE +L  + +     E
Sbjct: 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895

Query: 666 EICSNVQRKVKELENKL--KEHDQSENVTALHHKVRELENRLKARTQEFEVHS-----GM 718
                ++RK++ELE ++  K    SE    L     EL      + ++ E+         
Sbjct: 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED 955

Query: 719 LQQKIAELEEKLRKKEE 735
           +Q ++  +EE++R  E 
Sbjct: 956 VQAELQRVEEEIRALEP 972

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	860
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	100.0
KOG4280	574	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0245	1221	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0240	607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	100.0
PLN03188	1320	kinesin-12 family protein; Provisional	100.0
cd01370	338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	100.0
cd01373	337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	100.0
KOG0242	675	consensus Kinesin-like protein [Cytoskeleton]	100.0
cd01368	345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	100.0
cd01365	356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	100.0
KOG0241	1714	consensus Kinesin-like protein [Cytoskeleton]	100.0
cd01367	322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	100.0
cd01364	352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	100.0
cd01371	333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	100.0
cd01369	325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	100.0
cd01376	319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	100.0
cd01372	341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	100.0
cd01366	329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	100.0
cd01374	321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	100.0
cd01375	334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	100.0
KOG0247	809	consensus Kinesin-like protein [Cytoskeleton]	100.0
smart00129	335	KISc Kinesin motor, catalytic domain. ATPase. Micr	100.0
PF00225	335	Kinesin: Kinesin motor domain; InterPro: IPR001752	100.0
cd00106	328	KISc Kinesin motor domain. This catalytic (head) d	100.0
KOG0246	676	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0244	913	consensus Kinesin-like protein [Cytoskeleton]	100.0
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	100.0
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	100.0
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.83
PLN03150	623	hypothetical protein; Provisional	99.54
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	99.19
PLN03150	623	hypothetical protein; Provisional	98.8
KOG3593	355	consensus Predicted receptor-like serine/threonine	98.74
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	98.46
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	98.41
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.78
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.13
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.89
PRK11637	428	AmiB activator; Provisional	96.46
KOG0996	1293	consensus Structural maintenance of chromosome pro	96.38
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.33
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.27
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.04
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.97
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.94
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.73
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.61
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.59
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.53
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.48
KOG4673	961	consensus Transcription factor TMF, TATA element m	95.41
PRK09039	343	hypothetical protein; Validated	95.4
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.36
PRK11637	428	AmiB activator; Provisional	95.36
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.17
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.91
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	94.88
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	94.8
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.77
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.43
PHA02562	562	46 endonuclease subunit; Provisional	94.43
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.32
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.02
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	93.93
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	93.91
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.78
PHA02562	562	46 endonuclease subunit; Provisional	93.64
PRK09039	343	hypothetical protein; Validated	93.52
PF14662	193	CCDC155: Coiled-coil region of CCDC155	93.46
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.44
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	93.42
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.31
PRK02224	880	chromosome segregation protein; Provisional	93.14
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.11
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	93.01
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.0
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	93.0
PRK03918	880	chromosome segregation protein; Provisional	92.99
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	92.72
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	92.64
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	92.6
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	92.39
COG4942	420	Membrane-bound metallopeptidase [Cell division and	92.32
PF14662	193	CCDC155: Coiled-coil region of CCDC155	92.27
COG4942	420	Membrane-bound metallopeptidase [Cell division and	92.21
PRK04778	569	septation ring formation regulator EzrA; Provision	92.2
KOG0971	1243	consensus Microtubule-associated protein dynactin	92.13
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.1
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	91.99
PRK03918	880	chromosome segregation protein; Provisional	91.82
KOG0996	1293	consensus Structural maintenance of chromosome pro	91.47
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	91.47
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	91.46
PRK04863	1486	mukB cell division protein MukB; Provisional	91.4
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	91.4
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	91.38
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	91.37
PRK04863	1486	mukB cell division protein MukB; Provisional	91.31
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.3
KOG0971	1243	consensus Microtubule-associated protein dynactin	91.28
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	91.14
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	90.97
PF00038	312	Filament: Intermediate filament protein; InterPro:	90.95
PRK06835	329	DNA replication protein DnaC; Validated	90.85
COG4372	499	Uncharacterized protein conserved in bacteria with	90.79
PRK03992	389	proteasome-activating nucleotidase; Provisional	90.32
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.27
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	90.24
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	89.9
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	89.84
KOG0933	1174	consensus Structural maintenance of chromosome pro	89.78
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	89.7
COG4372	499	Uncharacterized protein conserved in bacteria with	89.62
PRK04778	569	septation ring formation regulator EzrA; Provision	89.52
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	89.42
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	89.41
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	89.3
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.3
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	89.28
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	89.26
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	88.9
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	88.79
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	88.65
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	88.45
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	88.3
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	88.29
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.25
KOG0933	1174	consensus Structural maintenance of chromosome pro	88.06
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	87.83
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	87.58
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	87.44
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	86.98
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	86.6
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	86.57
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	86.25
PLN02939	977	transferase, transferring glycosyl groups	86.04
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	85.83
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	85.83
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	85.8
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	85.48
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	85.44
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	84.99
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	84.9
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	84.83
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	84.83
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	84.79
COG5185	622	HEC1 Protein involved in chromosome segregation, i	84.77
KOG0964	1200	consensus Structural maintenance of chromosome pro	84.76
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	84.73
KOG1003	205	consensus Actin filament-coating protein tropomyos	84.58
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	84.44
PRK06893	229	DNA replication initiation factor; Validated	84.42
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	84.16
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	84.16
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	84.07
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	83.8
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	83.67
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	83.64
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	83.5
KOG0018	1141	consensus Structural maintenance of chromosome pro	83.15
PRK01156	895	chromosome segregation protein; Provisional	83.06
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	83.06
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	83.04
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	82.55
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	82.45
PRK11281	1113	hypothetical protein; Provisional	82.16
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	82.08
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	81.86
PRK10436	462	hypothetical protein; Provisional	81.85
TIGR02533	486	type_II_gspE general secretory pathway protein E.	81.82
PRK10929	1109	putative mechanosensitive channel protein; Provisi	81.67
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	81.55
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	81.54
PF13245	76	AAA_19: Part of AAA domain	81.47
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	81.24
PRK10884	206	SH3 domain-containing protein; Provisional	81.07
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	80.95
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	80.89
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	80.53
PRK06620	214	hypothetical protein; Validated	80.49
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	80.41
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	80.36
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	80.35
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	80.28
KOG1003	205	consensus Actin filament-coating protein tropomyos	80.27
COG2433	652	Uncharacterized conserved protein [Function unknow	80.15
PRK12704	520	phosphodiesterase; Provisional	80.12
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	80.06
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	80.01

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=5e-86  Score=779.81  Aligned_cols=331  Identities=41%  Similarity=0.632  Sum_probs=290.4

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEecCCC----------------------CCccceeEEEEecc-chhhHHHhhCCc
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK----------------------DGELGILTVDVFAD-ASPLVTSVLDGY  323 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~----------------------~~~~~~~~~dVf~~-v~plV~~~l~G~  323 (860)
                      -||+|+|||||++.+|....++.+|+.++..                      .|++...+.|||.. |.|+|..|+.||
T Consensus        49 ~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~Gy  128 (1041)
T KOG0243|consen   49 VNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGY  128 (1041)
T ss_pred             CceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccC
Confidence            6999999999999999988888888766521                      11111112345555 799999999999


Q ss_pred             cEEEEeeccCCCCccccccC--------CCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCC
Q 037169          324 NVCIFAYGQTGTGKTFTMEG--------TQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTS  395 (860)
Q Consensus       324 N~~IfaYGqTGSGKTyTM~G--------~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~  395 (860)
                      |||||||||||+||||||+|        .++++|||||++.+||+.+....  .+|+|+|||+|+|||.|+|||++....
T Consensus       129 NCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~~~  206 (1041)
T KOG0243|consen  129 NCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASEDTS  206 (1041)
T ss_pred             CceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCcccc
Confidence            99999999999999999999        56789999999999999998765  589999999999999999999976554


Q ss_pred             -CceEEEecC-----CCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCC---c
Q 037169          396 -KKLEIRQAS-----EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING---E  466 (860)
Q Consensus       396 -~~l~i~~~~-----~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~---~  466 (860)
                       +.+.+..++     +|++.|.|+.++.|+++.|++.+|.+|...|++++|.||.+|||||+||+|+|+......+   -
T Consensus       207 ~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geel  286 (1041)
T KOG0243|consen  207 DKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEEL  286 (1041)
T ss_pred             ccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhh
Confidence             667777665     6899999999999999999999999999999999999999999999999999977643322   2


Q ss_pred             eeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEe
Q 037169          467 CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ  546 (860)
Q Consensus       467 ~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~  546 (860)
                      ...|||+||||||||.++++|+.+.|.+||+.||+||.+||+||+||..+++|||||+|||||||||||||.+||+||+|
T Consensus       287 vK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIAT  366 (1041)
T KOG0243|consen  287 VKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIAT  366 (1041)
T ss_pred             HhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHhHHHHHHHHHHhhcccccccccccC---------hHHHHHHHHHHHHHHHHhc
Q 037169          547 ISPSEQDLGETLSSLNFASRVRGVELSPARKQID---------ISKLQKVKMMLEKTKQEVG  599 (860)
Q Consensus       547 VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~---------~~~~~~lk~~l~~~k~e~~  599 (860)
                      |||+..+++||++||.||.||++|+|+|..++.-         ..+|.+|+..+...+.+..
T Consensus       367 iSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnG  428 (1041)
T KOG0243|consen  367 ISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNG  428 (1041)
T ss_pred             eCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCc
Confidence            9999999999999999999999999999988643         2466777766666555443

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=100.00  E-value=6.5e-85  Score=766.99  Aligned_cols=456  Identities=43%  Similarity=0.558  Sum_probs=369.4

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhh-------hhHHHHHHHHHHHHHHH
Q 037169          141 MKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLD---NKCFQN-------LCLDQALEKQAAKLKDV  210 (860)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~~~~-------~~~~~~~~~~~~~~~~~  210 (860)
                      .|...+++..+..+..++......+.++...|.....+-..+...+.   .....+       ...++.+.....++..+
T Consensus       174 ~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l  253 (670)
T KOG0239|consen  174 LKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEEL  253 (670)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            56667788888888888877777777777666553333222222211   111111       11122233333444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc---hhhHHhhhhhccC-CCeEEEEEeCCCCchhhhCC
Q 037169          211 ASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHECASSV---PQLNKMVSTIQVL-GNIRVFCRCRPLSKEEASAG  286 (860)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~~~~~~~---~~~~~~~~~~~~~-gnIrV~~RvRP~~~~E~~~~  286 (860)
                      +..+..++......-...+..++.+...+..|...........   ...++++|+|+++ |||||||||||+.+.+....
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~  333 (670)
T KOG0239|consen  254 KAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRL  333 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccc
Confidence            5555555555555444555555444444443433322222222   5668999999887 99999999999999887642


Q ss_pred             CceEEE----------------------ecCCCCCccceeEEEEeccchhhHHHhhCCccEEEEeeccCCCCccccccC-
Q 037169          287 HAMVVD----------------------FSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG-  343 (860)
Q Consensus       287 ~~~~v~----------------------~~~~~~~~~~~~~~dVf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G-  343 (860)
                      ...++.                      |.+++.+.+...+.|||.++.|+|+++|||||+||||||||||||||||.| 
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~  413 (670)
T KOG0239|consen  334 QSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP  413 (670)
T ss_pred             cccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCC
Confidence            222221                      333334444555678999999999999999999999999999999999999 


Q ss_pred             CCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCCCceEecCeeEEEeCChHH
Q 037169          344 TQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKE  423 (860)
Q Consensus       344 ~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e  423 (860)
                      +++++|||||++.+||..+.....+|.|.+.+||+|||||.|+|||.+.+...++.|+++++|..+|+|++.+.|.+.++
T Consensus       414 ~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~  493 (670)
T KOG0239|consen  414 TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEE  493 (670)
T ss_pred             CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHH
Confidence            69999999999999999999988899999999999999999999998765567899999999999999999999999999


Q ss_pred             HHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcccccccccchhchHHHhHhhhhH
Q 037169          424 VWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSL  503 (860)
Q Consensus       424 ~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL  503 (860)
                      ++.++..|..+|++++|.+|++|||||+||+|+|.+.+..++..+.|.|+|||||||||+++++++|+|++|+++||+||
T Consensus       494 v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSL  573 (670)
T KOG0239|consen  494 VDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSL  573 (670)
T ss_pred             HHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhhcccccccccccChHH
Q 037169          504 SALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISK  583 (860)
Q Consensus       504 ~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~~~~  583 (860)
                      ++||+||.||+.+..||||||||||+||++||||++||+|||+|||...++.||+++|+||+|++.+++++++.+....+
T Consensus       574 S~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~  653 (670)
T KOG0239|consen  574 SALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSD  653 (670)
T ss_pred             hhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHHHHH
Q 037169          584 LQKVKMMLEKTKQ  596 (860)
Q Consensus       584 ~~~lk~~l~~~k~  596 (860)
                      ...+......++.
T Consensus       654 ~~~~~~~~~~~~~  666 (670)
T KOG0239|consen  654 DVSLKRFGQLEKL  666 (670)
T ss_pred             hhhhhhhhhhhhh
Confidence            7777666655543

>KOG4280 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=3.6e-82  Score=721.29  Aligned_cols=333  Identities=45%  Similarity=0.641  Sum_probs=293.5

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEecCC-----------------------CCCccceeEEEEecc-chhhHHHhhCC
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAA-----------------------KDGELGILTVDVFAD-ASPLVTSVLDG  322 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~-----------------------~~~~~~~~~~dVf~~-v~plV~~~l~G  322 (860)
                      -+|+||+||||++..+...+...++.++..                       ..++....+.|||.. +.|+|++|++|
T Consensus         5 ~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~G   84 (574)
T KOG4280|consen    5 CKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEG   84 (574)
T ss_pred             cceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcc
Confidence            478999999999998776654444433221                       111112223456655 68999999999


Q ss_pred             ccEEEEeeccCCCCccccccCC-CCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEE
Q 037169          323 YNVCIFAYGQTGTGKTFTMEGT-QQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIR  401 (860)
Q Consensus       323 ~N~~IfaYGqTGSGKTyTM~G~-~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~  401 (860)
                      ||+||||||||||||||||.|+ ++..|||||+|.+||..+....+...|.|+|||+|||||.|+|||++.+. +.+.|+
T Consensus        85 yNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~-~~l~lr  163 (574)
T KOG4280|consen   85 YNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP-KGLELR  163 (574)
T ss_pred             cCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-CCceee
Confidence            9999999999999999999999 67789999999999999999877778999999999999999999986543 689999


Q ss_pred             ecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeec-cCC--ceeEeeEEEeecC
Q 037169          402 QASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL-ING--ECTKSKLWLVDLA  478 (860)
Q Consensus       402 ~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~-~~~--~~~~skL~lVDLA  478 (860)
                      ++++.|+||.|++++.|.|+++++.+|..|..+|++++|.||.+|||||+||+|+|+.... ..+  ....|+|+|||||
T Consensus       164 e~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLa  243 (574)
T KOG4280|consen  164 EDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLA  243 (574)
T ss_pred             EcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeecc
Confidence            9999999999999999999999999999999999999999999999999999999998332 222  3467999999999


Q ss_pred             CcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCC-cccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhH
Q 037169          479 GSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG-HIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGET  557 (860)
Q Consensus       479 GSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~-hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ET  557 (860)
                      ||||..++++.|+|++||.+||+||++||+||.||++++. ||||||||||+||||||||||||+||+||||+..+++||
T Consensus       244 gsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ET  323 (574)
T KOG4280|consen  244 GSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEET  323 (574)
T ss_pred             chhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHH
Confidence            9999999999999999999999999999999999999766 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccccccccCh-HHHHHHHHHHHHHHHHhcC
Q 037169          558 LSSLNFASRVRGVELSPARKQIDI-SKLQKVKMMLEKTKQEVGS  600 (860)
Q Consensus       558 l~TL~fA~r~r~I~~~p~~~~~~~-~~~~~lk~~l~~~k~e~~~  600 (860)
                      ++||+||+|++.|+|.|.++.... ..+..++.+++.++.++..
T Consensus       324 lsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~  367 (574)
T KOG4280|consen  324 LSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDP  367 (574)
T ss_pred             HHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhcc
Confidence            999999999999999999988765 5677777788777777654

>KOG0245 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=4.1e-81  Score=724.07  Aligned_cols=334  Identities=35%  Similarity=0.558  Sum_probs=296.6

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEEecCCC-------------CCcccee-------------EEEEecc-chhhHHH
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVDFSAAK-------------DGELGIL-------------TVDVFAD-ASPLVTS  318 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~-------------~~~~~~~-------------~~dVf~~-v~plV~~  318 (860)
                      ..+|.|+||||||+..|....+..|+...+..             .|.+...             +..||.+ +.|+++.
T Consensus         3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~   82 (1221)
T KOG0245|consen    3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH   82 (1221)
T ss_pred             CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence            36899999999999999988777777544321             1111111             1237777 6899999


Q ss_pred             hhCCccEEEEeeccCCCCccccccCCC--CCCCchhhHHHHHHHHHHH-hcCCceEEEEEEEEEEeccccccccCCCCCC
Q 037169          319 VLDGYNVCIFAYGQTGTGKTFTMEGTQ--QNRGVNYRTLELLFKIAEE-RKETFTYSISVSALEVYNEQIRDLLDTSPTS  395 (860)
Q Consensus       319 ~l~G~N~~IfaYGqTGSGKTyTM~G~~--~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~  395 (860)
                      +++|||+||||||||||||||||+|.+  +++|||||++++||..+.. ......|+|.|||+|||||.|+|||+.++..
T Consensus        83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~k  162 (1221)
T KOG0245|consen   83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSK  162 (1221)
T ss_pred             HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCC
Confidence            999999999999999999999999987  8999999999999999986 3456899999999999999999999965667


Q ss_pred             CceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCC----ceeEee
Q 037169          396 KKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING----ECTKSK  471 (860)
Q Consensus       396 ~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~----~~~~sk  471 (860)
                      ..|++|++|--|+||.+|+.+.|+|..|+..+|..|++.|++++|+||+.|||||+||+|.+.+......    ...+|+
T Consensus       163 g~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SK  242 (1221)
T KOG0245|consen  163 GGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSK  242 (1221)
T ss_pred             CCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeee
Confidence            8999999999999999999999999999999999999999999999999999999999999988754322    457899


Q ss_pred             EEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc-------CCCcccCCCCcchhhcccccCCCcceeEE
Q 037169          472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-------KSGHIPYRNSKLTHLLQDSLGGDSKTLMF  544 (860)
Q Consensus       472 L~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~-------~~~hVPYRdSKLT~LLqdsLgGnskT~mI  544 (860)
                      ++|||||||||.+.+|+.|+|+||+.+|||||.+||.||+||+.       ++.+||||||-|||||++.|||||||.||
T Consensus       243 IsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMI  322 (1221)
T KOG0245|consen  243 ISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMI  322 (1221)
T ss_pred             eeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhh
Confidence            99999999999999999999999999999999999999999985       23499999999999999999999999999


Q ss_pred             EecCCCCCCHHhHHHHHHHHHHhhcccccccccccChHH-HHHHHHHHHHHHHHhc
Q 037169          545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISK-LQKVKMMLEKTKQEVG  599 (860)
Q Consensus       545 ~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~~~~-~~~lk~~l~~~k~e~~  599 (860)
                      +++||++.||+|||+|||||.|||.|++.+.++...... |++|++++.+|+.-+.
T Consensus       323 AAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~  378 (1221)
T KOG0245|consen  323 AALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLR  378 (1221)
T ss_pred             hccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999988876554 6778888888876654

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]

Probab=100.00  E-value=7.2e-79  Score=676.85  Aligned_cols=312  Identities=42%  Similarity=0.629  Sum_probs=286.0

Q ss_pred             cCCCeEEEEEeCCCCchhhhCCCceEEEecC------------------CCCCccceeEEEEecc-chhhHHHhhCCccE
Q 037169          265 VLGNIRVFCRCRPLSKEEASAGHAMVVDFSA------------------AKDGELGILTVDVFAD-ASPLVTSVLDGYNV  325 (860)
Q Consensus       265 ~~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~------------------~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~  325 (860)
                      +.++|+|+||+||++..|...|...+..|.+                  ++.|.....+.+||.. +.|+|++||.|||+
T Consensus         5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG   84 (607)
T KOG0240|consen    5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG   84 (607)
T ss_pred             CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence            5699999999999999887766555444433                  2223333334456655 78999999999999


Q ss_pred             EEEeeccCCCCccccccCCCC---CCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEe
Q 037169          326 CIFAYGQTGTGKTFTMEGTQQ---NRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQ  402 (860)
Q Consensus       326 ~IfaYGqTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~  402 (860)
                      ||||||||||||||||.|...   ..||+||++++||+.+.....+..|+|+|||||||+|+|+|||+  +....+.+.+
T Consensus        85 TvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~--~~k~nlsvhe  162 (607)
T KOG0240|consen   85 TVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLD--PEKTNLSVHE  162 (607)
T ss_pred             eEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhC--cccCCceeec
Confidence            999999999999999999765   56999999999999999999999999999999999999999998  4566899999


Q ss_pred             cCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCccc
Q 037169          403 ASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSER  482 (860)
Q Consensus       403 ~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr  482 (860)
                      |...+++|+|+++..|.++++++++++.|..+|+++.|+||.+|||||+||+|+|.+.+..+.....|+|.||||||||+
T Consensus       163 DK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGSEk  242 (607)
T KOG0240|consen  163 DKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGSEK  242 (607)
T ss_pred             ccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhchHHHhHhhhhHHHHHHHHHHhccC-CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHH
Q 037169          483 LAKTEVQGERLKEAQNINRSLSALGDVISSLATK-SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSL  561 (860)
Q Consensus       483 ~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~-~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL  561 (860)
                      ++++|+.|.-+.|+.+||+||+|||+||+||+.+ ..|||||||||||||||+|||||+|.+|+|+||+..+..||.+||
T Consensus       243 vsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl  322 (607)
T KOG0240|consen  243 VSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTL  322 (607)
T ss_pred             cCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccch
Confidence            9999999999999999999999999999999987 889999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccccccc
Q 037169          562 NFASRVRGVELSPARKQ  578 (860)
Q Consensus       562 ~fA~r~r~I~~~p~~~~  578 (860)
                      +|+.|++.|+|.+..+.
T Consensus       323 ~fg~rak~ikN~v~~n~  339 (607)
T KOG0240|consen  323 RFGNRAKTIKNTVWVNL  339 (607)
T ss_pred             hhccccccccchhhhhh
Confidence            99999999999887653

>PLN03188 kinesin-12 family protein; Provisional

Probab=100.00  E-value=2.3e-76  Score=703.09  Aligned_cols=329  Identities=39%  Similarity=0.600  Sum_probs=283.5

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEE------------EecCCCCCccceeEEEEecc-chhhHHHhhCCccEEEEeecc
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVV------------DFSAAKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFAYGQ  332 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v------------~~~~~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~IfaYGq  332 (860)
                      -++|+|||||||++..|.  +...++            .|.++..++....+.+||.. +.|+|+++++|||+|||||||
T Consensus        97 ds~VkV~VRVRPl~~~E~--g~~iV~~~s~dsl~I~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQ  174 (1320)
T PLN03188         97 DSGVKVIVRMKPLNKGEE--GEMIVQKMSNDSLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQ  174 (1320)
T ss_pred             CCCeEEEEEcCCCCCccC--CCeeEEEcCCCeEEEeCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCC
Confidence            379999999999998763  222222            13344444444555778888 589999999999999999999


Q ss_pred             CCCCccccccCCC----------CCCCchhhHHHHHHHHHHHh-----cCCceEEEEEEEEEEeccccccccCCCCCCCc
Q 037169          333 TGTGKTFTMEGTQ----------QNRGVNYRTLELLFKIAEER-----KETFTYSISVSALEVYNEQIRDLLDTSPTSKK  397 (860)
Q Consensus       333 TGSGKTyTM~G~~----------~~~GIipRal~~LF~~~~~~-----~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~  397 (860)
                      |||||||||+|+.          .++|||||++++||..+...     ...+.|.|+|||+|||||.|+|||++  ..+.
T Consensus       175 TGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp--~~k~  252 (1320)
T PLN03188        175 TGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDP--SQKN  252 (1320)
T ss_pred             CCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccc--ccCC
Confidence            9999999999964          46899999999999998653     23568999999999999999999984  3457


Q ss_pred             eEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc--C--CceeEeeEE
Q 037169          398 LEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI--N--GECTKSKLW  473 (860)
Q Consensus       398 l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~--~--~~~~~skL~  473 (860)
                      +.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|......  +  .....|+|+
T Consensus       253 L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLn  332 (1320)
T PLN03188        253 LQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRIN  332 (1320)
T ss_pred             ceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999865432  2  234579999


Q ss_pred             EeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc-----CCCcccCCCCcchhhcccccCCCcceeEEEecC
Q 037169          474 LVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-----KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQIS  548 (860)
Q Consensus       474 lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~-----~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VS  548 (860)
                      |||||||||..++++.|.+++|+.+||+||++||+||.+|+.     +..||||||||||+||||+|||||+|+||||||
T Consensus       333 LVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VS  412 (1320)
T PLN03188        333 LVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAIS  412 (1320)
T ss_pred             EEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecC
Confidence            999999999999999999999999999999999999999985     457999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHHHHHhhcccccccccccChHHHHHHHHHHHHHHHHh
Q 037169          549 PSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEV  598 (860)
Q Consensus       549 P~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~~~~~~~lk~~l~~~k~e~  598 (860)
                      |+..+++||++||+||+|++.|++.|..+.....++..++.++..++.++
T Consensus       413 Ps~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL  462 (1320)
T PLN03188        413 PSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDEL  462 (1320)
T ss_pred             CchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988765554444555555444443

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup

Probab=100.00  E-value=1.1e-75  Score=649.38  Aligned_cols=301  Identities=43%  Similarity=0.643  Sum_probs=272.8

Q ss_pred             CeEEEEEeCCCCchhhhCCCceEEEecC--------CC----------------------CCccceeEEEEecc-chhhH
Q 037169          268 NIRVFCRCRPLSKEEASAGHAMVVDFSA--------AK----------------------DGELGILTVDVFAD-ASPLV  316 (860)
Q Consensus       268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~--------~~----------------------~~~~~~~~~dVf~~-v~plV  316 (860)
                      ||||||||||+.+.|...+...++....        ..                      .++....+.+||.+ +.|+|
T Consensus         1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv   80 (338)
T cd01370           1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV   80 (338)
T ss_pred             CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence            7999999999999987666555554322        11                      11111122346665 46999


Q ss_pred             HHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCC
Q 037169          317 TSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK  396 (860)
Q Consensus       317 ~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~  396 (860)
                      +++++|||+||||||||||||||||+|++.++|||||++++||+.+......+.|.|++||+|||||.|+|||++.  .+
T Consensus        81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~--~~  158 (338)
T cd01370          81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS--SG  158 (338)
T ss_pred             HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC--CC
Confidence            9999999999999999999999999999999999999999999999988878999999999999999999999853  56


Q ss_pred             ceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc---CCceeEeeEE
Q 037169          397 KLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI---NGECTKSKLW  473 (860)
Q Consensus       397 ~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~---~~~~~~skL~  473 (860)
                      .+.+++++.++++|+|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+..   ......|+|+
T Consensus       159 ~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~  238 (338)
T cd01370         159 PLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLS  238 (338)
T ss_pred             CceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEE
Confidence            8999999999999999999999999999999999999999999999999999999999999988765   4567889999


Q ss_pred             EeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCC---CcccCCCCcchhhcccccCCCcceeEEEecCCC
Q 037169          474 LVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKS---GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPS  550 (860)
Q Consensus       474 lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~---~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~  550 (860)
                      |||||||||..+++..|.+++|+.+||+||++|++||.+|+.+.   .||||||||||+||+|+||||++|+||+||||+
T Consensus       239 ~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~  318 (338)
T cd01370         239 LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPS  318 (338)
T ss_pred             EEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence            99999999999999999999999999999999999999999877   899999999999999999999999999999999


Q ss_pred             CCCHHhHHHHHHHHHHhhcc
Q 037169          551 EQDLGETLSSLNFASRVRGV  570 (860)
Q Consensus       551 ~~~~~ETl~TL~fA~r~r~I  570 (860)
                      ..+++||++||+||+||++|
T Consensus       319 ~~~~~eTl~TL~fa~ra~~I  338 (338)
T cd01370         319 SSHYEETHNTLKYANRAKNI  338 (338)
T ss_pred             hhhHHHHHHHHHHHHHhccC
Confidence            99999999999999999986

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup

Probab=100.00  E-value=7.5e-75  Score=642.59  Aligned_cols=302  Identities=42%  Similarity=0.626  Sum_probs=266.4

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEec----------------CCCCCccceeEEEEecc-chhhHHHhhCCccEEEEe
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFS----------------AAKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFA  329 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~----------------~~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~Ifa  329 (860)
                      .||||||||||+...|...+...++...                ++..+.....+.+||.+ +.|+|+++++|||+||||
T Consensus         1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~a   80 (337)
T cd01373           1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFA   80 (337)
T ss_pred             CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEE
Confidence            4899999999999988755444444322                22222222334567777 589999999999999999


Q ss_pred             eccCCCCccccccCCCC--------CCCchhhHHHHHHHHHHHh----cCCceEEEEEEEEEEeccccccccCCCCCCCc
Q 037169          330 YGQTGTGKTFTMEGTQQ--------NRGVNYRTLELLFKIAEER----KETFTYSISVSALEVYNEQIRDLLDTSPTSKK  397 (860)
Q Consensus       330 YGqTGSGKTyTM~G~~~--------~~GIipRal~~LF~~~~~~----~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~  397 (860)
                      ||||||||||||+|+..        ++||+||++++||..+...    .....|.|++||+|||||.|+|||++  ....
T Consensus        81 YGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~--~~~~  158 (337)
T cd01373          81 YGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDP--TSRN  158 (337)
T ss_pred             eCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCC--CCCC
Confidence            99999999999999763        6899999999999988653    24568999999999999999999974  3457


Q ss_pred             eEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCC--ceeEeeEEEe
Q 037169          398 LEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING--ECTKSKLWLV  475 (860)
Q Consensus       398 l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~--~~~~skL~lV  475 (860)
                      +.+++++.++++|+|++++.|.|++|++.+|..|..+|++++|.+|.+|||||+||+|.|...+...+  ....|+|+||
T Consensus       159 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~V  238 (337)
T cd01373         159 LKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLV  238 (337)
T ss_pred             ceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999987664433  3567999999


Q ss_pred             ecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc----CCCcccCCCCcchhhcccccCCCcceeEEEecCCCC
Q 037169          476 DLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT----KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSE  551 (860)
Q Consensus       476 DLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~----~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~  551 (860)
                      |||||||..++++.|.+++|+.+||+||++|++||.+|+.    +..|||||+||||+||+|+|||||+|+||+||||+.
T Consensus       239 DLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~  318 (337)
T cd01373         239 DLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSS  318 (337)
T ss_pred             ECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCc
Confidence            9999999999999999999999999999999999999974    468999999999999999999999999999999999


Q ss_pred             CCHHhHHHHHHHHHHhhcc
Q 037169          552 QDLGETLSSLNFASRVRGV  570 (860)
Q Consensus       552 ~~~~ETl~TL~fA~r~r~I  570 (860)
                      .+++||++||+||+|++.|
T Consensus       319 ~~~~eTl~TL~fa~rak~I  337 (337)
T cd01373         319 KCFGETLSTLKFAQRAKLI  337 (337)
T ss_pred             ccHHHHHHHHHHHHHhhcC
Confidence            9999999999999999976

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second

>KOG0242 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=3.1e-74  Score=679.12  Aligned_cols=310  Identities=42%  Similarity=0.642  Sum_probs=278.2

Q ss_pred             CCeEEEEEeCCCCchhhhCCC----------ceE-------------EEecCCCCCccceeEEEEecc-chhhHHHhhCC
Q 037169          267 GNIRVFCRCRPLSKEEASAGH----------AMV-------------VDFSAAKDGELGILTVDVFAD-ASPLVTSVLDG  322 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~----------~~~-------------v~~~~~~~~~~~~~~~dVf~~-v~plV~~~l~G  322 (860)
                      .+|.|+|||||+.+.+...+.          ..+             ..|.+++.|.....+.+||.. ++|+|.+++.|
T Consensus         6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G   85 (675)
T KOG0242|consen    6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG   85 (675)
T ss_pred             ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence            589999999999987322111          100             122333444445556778887 89999999999


Q ss_pred             ccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEe
Q 037169          323 YNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQ  402 (860)
Q Consensus       323 ~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~  402 (860)
                      ||++|||||||||||||||.|.+.+|||||+++.+||+.+.... .+.|.|.|||+|||||.|+|||+++  ...+.|++
T Consensus        86 ~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~--~~~L~irE  162 (675)
T KOG0242|consen   86 FNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPD--GGDLRLRE  162 (675)
T ss_pred             cccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCC--CCCceEeE
Confidence            99999999999999999999999999999999999999999876 7899999999999999999999854  44599999


Q ss_pred             cCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCccc
Q 037169          403 ASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSER  482 (860)
Q Consensus       403 ~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr  482 (860)
                      |+.++++|+||++..|.|+++++.+|..|..+|+++.|.+|..|||||+||+|.|.......+. ..|+|+|||||||||
T Consensus       163 D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLAGSER  241 (675)
T KOG0242|consen  163 DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLAGSER  241 (675)
T ss_pred             cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhhhhhh
Confidence            9999999999999999999999999999999999999999999999999999999987754442 678999999999999


Q ss_pred             ccccccchhchHHHhHhhhhHHHHHHHHHHhccC--CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHH
Q 037169          483 LAKTEVQGERLKEAQNINRSLSALGDVISSLATK--SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSS  560 (860)
Q Consensus       483 ~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~--~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~T  560 (860)
                      ..++++.|.|++|+.+||+||.+||+||.+|+.+  ..||||||||||||||++||||++|+|||||+|+..+++||.+|
T Consensus       242 as~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nT  321 (675)
T KOG0242|consen  242 ASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNT  321 (675)
T ss_pred             hhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHH
Confidence            9999999999999999999999999999999976  56999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccccccccC
Q 037169          561 LNFASRVRGVELSPARKQID  580 (860)
Q Consensus       561 L~fA~r~r~I~~~p~~~~~~  580 (860)
                      |+||+|++.|.+.+..+.+.
T Consensus       322 L~fAsrak~i~~~~~~n~~~  341 (675)
T KOG0242|consen  322 LKFASRAKEITTKAQVNVIL  341 (675)
T ss_pred             HHHHHHhhhcccccccceec
Confidence            99999999999998877553

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup

Probab=100.00  E-value=4e-73  Score=630.55  Aligned_cols=295  Identities=38%  Similarity=0.596  Sum_probs=260.9

Q ss_pred             CeEEEEEeCCCCchhhhCCCceEEEecC------------------------------CCCCccceeEEEEecc-chhhH
Q 037169          268 NIRVFCRCRPLSKEEASAGHAMVVDFSA------------------------------AKDGELGILTVDVFAD-ASPLV  316 (860)
Q Consensus       268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~------------------------------~~~~~~~~~~~dVf~~-v~plV  316 (860)
                      +|+|||||||+.+.|...+...++....                              +..+.....+.+||.. +.|+|
T Consensus         2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v   81 (345)
T cd01368           2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV   81 (345)
T ss_pred             CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence            7999999999999886554443332211                              0111111122345655 57999


Q ss_pred             HHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCC--
Q 037169          317 TSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPT--  394 (860)
Q Consensus       317 ~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~--  394 (860)
                      +++++|||+||||||||||||||||+|++.++|||||++++||+.+..      |.|++||+|||||.|+|||++.+.  
T Consensus        82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~~~~~  155 (345)
T cd01368          82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDSPSST  155 (345)
T ss_pred             HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCccccc
Confidence            999999999999999999999999999999999999999999999875      899999999999999999986543  


Q ss_pred             --CCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC--------
Q 037169          395 --SKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN--------  464 (860)
Q Consensus       395 --~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~--------  464 (860)
                        .+.+.++++++++++|+|++++.|.|++|++.+|..|..+|.+++|.+|.+|||||+||+|++.......        
T Consensus       156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~  235 (345)
T cd01368         156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK  235 (345)
T ss_pred             cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence              3579999999999999999999999999999999999999999999999999999999999998765432        


Q ss_pred             CceeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc------CCCcccCCCCcchhhcccccCCC
Q 037169          465 GECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT------KSGHIPYRNSKLTHLLQDSLGGD  538 (860)
Q Consensus       465 ~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~------~~~hVPYRdSKLT~LLqdsLgGn  538 (860)
                      +....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.      +..|||||+||||+||+|+||||
T Consensus       236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~  315 (345)
T cd01368         236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE  315 (345)
T ss_pred             CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence            446789999999999999999999999999999999999999999999986      56899999999999999999999


Q ss_pred             cceeEEEecCCCCCCHHhHHHHHHHHHHhh
Q 037169          539 SKTLMFLQISPSEQDLGETLSSLNFASRVR  568 (860)
Q Consensus       539 skT~mI~~VSP~~~~~~ETl~TL~fA~r~r  568 (860)
                      ++|+||+||||+..+++||++||+||.+++
T Consensus       316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~  345 (345)
T cd01368         316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ  345 (345)
T ss_pred             CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999985

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins

Probab=100.00  E-value=1.9e-72  Score=627.90  Aligned_cols=310  Identities=40%  Similarity=0.628  Sum_probs=277.1

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEecCC-----------------------CCCccc-------eeEEEEecc-chhh
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAA-----------------------KDGELG-------ILTVDVFAD-ASPL  315 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~-----------------------~~~~~~-------~~~~dVf~~-v~pl  315 (860)
                      +||+|||||||++..|...++..++.++..                       ..+...       ..+.+||.+ +.|+
T Consensus         1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~   80 (356)
T cd01365           1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL   80 (356)
T ss_pred             CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence            689999999999999887766655543321                       111111       223456655 5799


Q ss_pred             HHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcC-CceEEEEEEEEEEeccccccccCCCC-
Q 037169          316 VTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKE-TFTYSISVSALEVYNEQIRDLLDTSP-  393 (860)
Q Consensus       316 V~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~i~DLL~~~~-  393 (860)
                      |+++++|||+||||||||||||||||+|+..++|||||++++||+.+..... ...|.|++||+|||||.|+|||++.+ 
T Consensus        81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~  160 (356)
T cd01365          81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK  160 (356)
T ss_pred             HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence            9999999999999999999999999999999999999999999999987654 67899999999999999999998764 


Q ss_pred             CCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc----CCceeE
Q 037169          394 TSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI----NGECTK  469 (860)
Q Consensus       394 ~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~----~~~~~~  469 (860)
                      ....+.+++++.++++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+....    ......
T Consensus       161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~  240 (356)
T cd01365         161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKV  240 (356)
T ss_pred             CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEE
Confidence            4568999999999999999999999999999999999999999999999999999999999999887654    345678


Q ss_pred             eeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccC--------CCcccCCCCcchhhcccccCCCcce
Q 037169          470 SKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATK--------SGHIPYRNSKLTHLLQDSLGGDSKT  541 (860)
Q Consensus       470 skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~--------~~hVPYRdSKLT~LLqdsLgGnskT  541 (860)
                      |+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+..        ..|||||+||||+||+++|||+++|
T Consensus       241 s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t  320 (356)
T cd01365         241 SKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKT  320 (356)
T ss_pred             EEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceE
Confidence            99999999999999999999999999999999999999999999863        4899999999999999999999999


Q ss_pred             eEEEecCCCCCCHHhHHHHHHHHHHhhcccccccc
Q 037169          542 LMFLQISPSEQDLGETLSSLNFASRVRGVELSPAR  576 (860)
Q Consensus       542 ~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~  576 (860)
                      +||+||||...+++||++||+||++++.|++.|..
T Consensus       321 ~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~  355 (356)
T cd01365         321 AMIATISPADINYEETLSTLRYADRAKKIVNVAVV  355 (356)
T ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence            99999999999999999999999999999999864

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.

>KOG0241 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=2.2e-72  Score=639.02  Aligned_cols=373  Identities=34%  Similarity=0.546  Sum_probs=308.9

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEecCCC--------------CCccceeE------------------EEEecc-ch
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK--------------DGELGILT------------------VDVFAD-AS  313 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~--------------~~~~~~~~------------------~dVf~~-v~  313 (860)
                      .+|||+|||||++.+|.+-....+++.+...              ......|.                  .+||.. ..
T Consensus         4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~   83 (1714)
T KOG0241|consen    4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGE   83 (1714)
T ss_pred             cceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcch
Confidence            6899999999999999887666666544211              01111121                  456766 45


Q ss_pred             hhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEeccccccccCCC
Q 037169          314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRDLLDTS  392 (860)
Q Consensus       314 plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~DLL~~~  392 (860)
                      -+|+++|+|||+||||||||||||||||+|..+++|||||++..||..+... .....|.|.|||+|||||++||||+|.
T Consensus        84 ~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk  163 (1714)
T KOG0241|consen   84 GILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPK  163 (1714)
T ss_pred             HHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCC
Confidence            6889999999999999999999999999999999999999999999998764 456789999999999999999999998


Q ss_pred             CCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc--CCc--ee
Q 037169          393 PTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI--NGE--CT  468 (860)
Q Consensus       393 ~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~--~~~--~~  468 (860)
                      +.++.+.++++.--|+||.||++..|.|++|+-.++..|+++|++++|+||..|||||+||.|.|.+.-.+  ++.  ..
T Consensus       164 ~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeK  243 (1714)
T KOG0241|consen  164 GSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEK  243 (1714)
T ss_pred             CCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhh
Confidence            88999999999999999999999999999999999999999999999999999999999999999875332  222  35


Q ss_pred             EeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc------CCCcccCCCCcchhhcccccCCCccee
Q 037169          469 KSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT------KSGHIPYRNSKLTHLLQDSLGGDSKTL  542 (860)
Q Consensus       469 ~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~------~~~hVPYRdSKLT~LLqdsLgGnskT~  542 (860)
                      .|+|+|||||||||..++++.|.|++|+.+||+||++||.||+||++      ++++||||||-||+||+|+|||||+|+
T Consensus       244 vsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTv  323 (1714)
T KOG0241|consen  244 VSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTV  323 (1714)
T ss_pred             eeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeE
Confidence            79999999999999999999999999999999999999999999985      346999999999999999999999999


Q ss_pred             EEEecCCCCCCHHhHHHHHHHHHHhhcccccccccccCh-HHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHHhh
Q 037169          543 MFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI-SKLQKVKMMLEKTKQEVGSKD-DVIQKLEENFQNLEVKAK  620 (860)
Q Consensus       543 mI~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~~-~~~~~lk~~l~~~k~e~~~~~-~~i~~le~~~~~l~~~~~  620 (860)
                      ||+||||++++|+||++|||||.|||.|+|....+.... .-+.+++.++++++..+...+ .....+++.+++++..++
T Consensus       324 MiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~  403 (1714)
T KOG0241|consen  324 MIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIK  403 (1714)
T ss_pred             EEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988776654 346778888888777665422 223344444444433221


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHH
Q 037169          621 GNVQLCKNQQEKINELESQLES  642 (860)
Q Consensus       621 ~~~~~~~~~~~k~~ele~~l~~  642 (860)
                         +.....++++..++.+...
T Consensus       404 ---ei~~twEEkl~ktE~in~e  422 (1714)
T KOG0241|consen  404 ---EITVTWEEKLRKTEEINQE  422 (1714)
T ss_pred             ---HHHhHHHHHHHHHHHHHHH
Confidence               2223344555555544443

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group

Probab=100.00  E-value=1.7e-71  Score=612.27  Aligned_cols=294  Identities=37%  Similarity=0.563  Sum_probs=262.7

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEecCC--------------------------CCCccceeEEEEecc-chhhHHHh
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAA--------------------------KDGELGILTVDVFAD-ASPLVTSV  319 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~--------------------------~~~~~~~~~~dVf~~-v~plV~~~  319 (860)
                      .||+|||||||+.+.|...+...++..+..                          ..+.....+.+||+. +.|+|+++
T Consensus         1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~   80 (322)
T cd01367           1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV   80 (322)
T ss_pred             CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence            489999999999999875554443332221                          111111122346655 68999999


Q ss_pred             hCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceE
Q 037169          320 LDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLE  399 (860)
Q Consensus       320 l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~  399 (860)
                      ++|||+||||||||||||||||+|+..++||+||++++||+.+....  ..|.|++||+|||||.++|||++   .+.+.
T Consensus        81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~---~~~l~  155 (322)
T cd01367          81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND---RKRLS  155 (322)
T ss_pred             hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC---cccee
Confidence            99999999999999999999999999999999999999999998655  68999999999999999999985   46799


Q ss_pred             EEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCC
Q 037169          400 IRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAG  479 (860)
Q Consensus       400 i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAG  479 (860)
                      +++++.++++|+|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|...+.   ....|+|+||||||
T Consensus       156 i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~vDLAG  232 (322)
T cd01367         156 VLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDLAG  232 (322)
T ss_pred             EEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEeecCC
Confidence            999999999999999999999999999999999999999999999999999999999988764   45789999999999


Q ss_pred             cccccccc-cchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHH
Q 037169          480 SERLAKTE-VQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETL  558 (860)
Q Consensus       480 SEr~~~t~-~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl  558 (860)
                      |||...++ ..|.+++|+.+||+||++|++||.+|+.++.||||||||||+||+|+||||++|+||+||||+..+++||+
T Consensus       233 sE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl  312 (322)
T cd01367         233 SERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTL  312 (322)
T ss_pred             ccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHH
Confidence            99998765 46899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 037169          559 SSLNFASRVR  568 (860)
Q Consensus       559 ~TL~fA~r~r  568 (860)
                      +||+||+|+|
T Consensus       313 ~tL~fa~r~k  322 (322)
T cd01367         313 NTLRYADRVK  322 (322)
T ss_pred             HHHHHHHhhC
Confidence            9999999985

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

Probab=100.00  E-value=1e-70  Score=613.35  Aligned_cols=310  Identities=43%  Similarity=0.631  Sum_probs=274.8

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEecCC----------------------CCCccceeEEEEecc-chhhHHHhhCCc
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAA----------------------KDGELGILTVDVFAD-ASPLVTSVLDGY  323 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~----------------------~~~~~~~~~~dVf~~-v~plV~~~l~G~  323 (860)
                      +||+|+|||||+...|...+...++.....                      ..+.....+.+||.. +.|+|+++++||
T Consensus         2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~   81 (352)
T cd01364           2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY   81 (352)
T ss_pred             CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence            699999999999998876555554444322                      111122223456665 689999999999


Q ss_pred             cEEEEeeccCCCCccccccCCC-----------CCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCC
Q 037169          324 NVCIFAYGQTGTGKTFTMEGTQ-----------QNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTS  392 (860)
Q Consensus       324 N~~IfaYGqTGSGKTyTM~G~~-----------~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~  392 (860)
                      |+||||||||||||||||+|+.           .++|||||++.+||+.+...  ...|.|++||+|||||.|+|||++.
T Consensus        82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~  159 (352)
T cd01364          82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSSE  159 (352)
T ss_pred             eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCCc
Confidence            9999999999999999999984           34899999999999999875  5689999999999999999999865


Q ss_pred             C-CCCceEEEec--CCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC---Cc
Q 037169          393 P-TSKKLEIRQA--SEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN---GE  466 (860)
Q Consensus       393 ~-~~~~l~i~~~--~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~---~~  466 (860)
                      . ..+.+.++++  ..++++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.......   ..
T Consensus       160 ~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~  239 (352)
T cd01364         160 SDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEEL  239 (352)
T ss_pred             cccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCcc
Confidence            3 3567999999  5889999999999999999999999999999999999999999999999999998765432   23


Q ss_pred             eeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEe
Q 037169          467 CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ  546 (860)
Q Consensus       467 ~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~  546 (860)
                      ...|+|+||||||||+..++++.+.+++|+..||+||++|++||.+|+.++.|||||+||||+||+|+|||||+|+||+|
T Consensus       240 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~  319 (352)
T cd01364         240 VKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIAT  319 (352)
T ss_pred             EEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHhHHHHHHHHHHhhcccccccccc
Q 037169          547 ISPSEQDLGETLSSLNFASRVRGVELSPARKQ  578 (860)
Q Consensus       547 VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~  578 (860)
                      |||+..+++||++||+||+++++|++.|..++
T Consensus       320 vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~  351 (352)
T cd01364         320 ISPASINLEETLSTLEYAHRAKNIKNKPEVNQ  351 (352)
T ss_pred             eCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence            99999999999999999999999999998764

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins

Probab=100.00  E-value=3.4e-70  Score=604.71  Aligned_cols=301  Identities=46%  Similarity=0.700  Sum_probs=269.8

Q ss_pred             CeEEEEEeCCCCchhhhCCCceEEEecCCC-----------------------CCccceeEEEEecc-chhhHHHhhCCc
Q 037169          268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAK-----------------------DGELGILTVDVFAD-ASPLVTSVLDGY  323 (860)
Q Consensus       268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~~~-----------------------~~~~~~~~~dVf~~-v~plV~~~l~G~  323 (860)
                      ||+|+|||||+++.|...++..++..++..                       .++....+.+||+. +.|+|+++++||
T Consensus         2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~   81 (333)
T cd01371           2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGY   81 (333)
T ss_pred             CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCC
Confidence            899999999999988877666555543221                       11112222456666 689999999999


Q ss_pred             cEEEEeeccCCCCccccccCCCC---CCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEE
Q 037169          324 NVCIFAYGQTGTGKTFTMEGTQQ---NRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEI  400 (860)
Q Consensus       324 N~~IfaYGqTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i  400 (860)
                      |+||||||||||||||||+|+..   ++|||||++++||+.+..... ..|.|++||+|||||.|+|||++.. .+.+.+
T Consensus        82 n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~-~~~l~i  159 (333)
T cd01371          82 NGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ-KKKLEL  159 (333)
T ss_pred             ceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC-CCceeE
Confidence            99999999999999999999887   899999999999999987654 6899999999999999999998542 357999


Q ss_pred             EecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc---CCceeEeeEEEeec
Q 037169          401 RQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI---NGECTKSKLWLVDL  477 (860)
Q Consensus       401 ~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~---~~~~~~skL~lVDL  477 (860)
                      ++++.++++|+|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|...+..   .+....|+|+||||
T Consensus       160 ~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDL  239 (333)
T cd01371         160 KERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDL  239 (333)
T ss_pred             EEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999999987653   34466899999999


Q ss_pred             CCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCC-cccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHh
Q 037169          478 AGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG-HIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGE  556 (860)
Q Consensus       478 AGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~-hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~E  556 (860)
                      |||||..+++..|.+++|+..||+||.+|++||.+|+.+.. |||||+||||+||+++||||++|+||+||||...+++|
T Consensus       240 AGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~e  319 (333)
T cd01371         240 AGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDE  319 (333)
T ss_pred             CCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHH
Confidence            99999999999999999999999999999999999998775 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 037169          557 TLSSLNFASRVRGV  570 (860)
Q Consensus       557 Tl~TL~fA~r~r~I  570 (860)
                      |++||+||+|+|.|
T Consensus       320 Tl~TL~fa~r~r~I  333 (333)
T cd01371         320 TLSTLRYANRAKNI  333 (333)
T ss_pred             HHHHHHHHHHhhcC
Confidence            99999999999976

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

Probab=100.00  E-value=3.6e-70  Score=602.72  Aligned_cols=302  Identities=45%  Similarity=0.692  Sum_probs=275.0

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEecCCC-----------------CCccceeEEEEecc-chhhHHHhhCCccEEEE
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK-----------------DGELGILTVDVFAD-ASPLVTSVLDGYNVCIF  328 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~-----------------~~~~~~~~~dVf~~-v~plV~~~l~G~N~~If  328 (860)
                      .+|+|+|||||+.+.|...+...++.+....                 .+.....+.+||.. +.|+|+++++|||+|||
T Consensus         2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~   81 (325)
T cd01369           2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF   81 (325)
T ss_pred             CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence            4899999999999988666655555544331                 11111222456655 58999999999999999


Q ss_pred             eeccCCCCccccccCCCC---CCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCC
Q 037169          329 AYGQTGTGKTFTMEGTQQ---NRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASE  405 (860)
Q Consensus       329 aYGqTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~  405 (860)
                      |||||||||||||+|++.   ++||+||++++||+.+........|.|++||+|||||.++|||++.  ...+.+++++.
T Consensus        82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~--~~~l~i~~~~~  159 (325)
T cd01369          82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS--KDNLQVHEDKN  159 (325)
T ss_pred             EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc--cCCceEEEcCC
Confidence            999999999999999988   8999999999999999888777899999999999999999999853  45689999999


Q ss_pred             CceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcccccc
Q 037169          406 GFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAK  485 (860)
Q Consensus       406 g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~  485 (860)
                      ++++|+|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+||||||||+..+
T Consensus       160 ~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~~~~  239 (325)
T cd01369         160 RGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKVSK  239 (325)
T ss_pred             CCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999988888888999999999999999999


Q ss_pred             cccchhchHHHhHhhhhHHHHHHHHHHhccCC-CcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHH
Q 037169          486 TEVQGERLKEAQNINRSLSALGDVISSLATKS-GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFA  564 (860)
Q Consensus       486 t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA  564 (860)
                      +++.|.+++|+..||+||++|++||.+|+++. .|||||+||||+||+|+|||+|+|+||+||||+..+++||++||+||
T Consensus       240 ~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a  319 (325)
T cd01369         240 TGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFG  319 (325)
T ss_pred             cCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHH
Confidence            99999999999999999999999999999877 99999999999999999999999999999999999999999999999


Q ss_pred             HHhhcc
Q 037169          565 SRVRGV  570 (860)
Q Consensus       565 ~r~r~I  570 (860)
                      +|+++|
T Consensus       320 ~r~~~i  325 (325)
T cd01369         320 ARAKTI  325 (325)
T ss_pred             HHhhcC
Confidence            999976

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup

Probab=100.00  E-value=4.6e-70  Score=600.38  Aligned_cols=293  Identities=39%  Similarity=0.556  Sum_probs=260.5

Q ss_pred             CeEEEEEeCCCCchhhhCCCceEEEe-cC------------------------CCCCccceeEEEEecc-chhhHHHhhC
Q 037169          268 NIRVFCRCRPLSKEEASAGHAMVVDF-SA------------------------AKDGELGILTVDVFAD-ASPLVTSVLD  321 (860)
Q Consensus       268 nIrV~~RvRP~~~~E~~~~~~~~v~~-~~------------------------~~~~~~~~~~~dVf~~-v~plV~~~l~  321 (860)
                      ||+|||||||+.+.|....  .++.. +.                        +..+.....+.+||.. +.|+|+++++
T Consensus         1 ~i~V~vRvRP~~~~e~~~~--~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~   78 (319)
T cd01376           1 NVRVVVRVRPFLDCEEDSS--SCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS   78 (319)
T ss_pred             CcEEEEEeCcCCccccCCC--ceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence            7999999999988874321  11211 11                        1111111222456666 7899999999


Q ss_pred             CccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEE
Q 037169          322 GYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIR  401 (860)
Q Consensus       322 G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~  401 (860)
                      |||+||||||||||||||||+|++.++||+||++++||+.+....  +.|.|++||+|||||.|+|||++.  ...+.|+
T Consensus        79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--~~~l~i~  154 (319)
T cd01376          79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA--WTGAFSMSYYEIYNEKVYDLLEPA--KKELPIR  154 (319)
T ss_pred             CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc--ccceEEEEEEEEECCEeeEccCCC--CCCceEE
Confidence            999999999999999999999999999999999999999886543  689999999999999999999853  4578999


Q ss_pred             ecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcc
Q 037169          402 QASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSE  481 (860)
Q Consensus       402 ~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSE  481 (860)
                      ++++|+++|+|++++.|.|++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+.  .....|+|+||||||||
T Consensus       155 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDLAGsE  232 (319)
T cd01376         155 EDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDLAGSE  232 (319)
T ss_pred             EcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEECCCCC
Confidence            9999999999999999999999999999999999999999999999999999999988753  33678999999999999


Q ss_pred             cccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHH
Q 037169          482 RLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSL  561 (860)
Q Consensus       482 r~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL  561 (860)
                      +..+++..|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||...+++||++||
T Consensus       233 ~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL  312 (319)
T cd01376         233 DNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTL  312 (319)
T ss_pred             cccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 037169          562 NFASRVR  568 (860)
Q Consensus       562 ~fA~r~r  568 (860)
                      +||+|+|
T Consensus       313 ~fa~r~~  319 (319)
T cd01376         313 NFASRSK  319 (319)
T ss_pred             HHHHhhC
Confidence            9999986

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily

Probab=100.00  E-value=7.7e-70  Score=603.72  Aligned_cols=304  Identities=41%  Similarity=0.652  Sum_probs=274.1

Q ss_pred             CeEEEEEeCCCCchhhhCCCceEEEecCC---------------CCCccceeEEEEecc-chhhHHHhhCCccEEEEeec
Q 037169          268 NIRVFCRCRPLSKEEASAGHAMVVDFSAA---------------KDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFAYG  331 (860)
Q Consensus       268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~~---------------~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~IfaYG  331 (860)
                      +|+||||+||+.+.|...+...++.+.+.               ..+.....+.+||.. +.|+|+++++|||+||||||
T Consensus         2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG   81 (341)
T cd01372           2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYG   81 (341)
T ss_pred             CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeec
Confidence            69999999999999877666555544332               222222334567776 67999999999999999999


Q ss_pred             cCCCCccccccCCC------CCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCC-CCCceEEEecC
Q 037169          332 QTGTGKTFTMEGTQ------QNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSP-TSKKLEIRQAS  404 (860)
Q Consensus       332 qTGSGKTyTM~G~~------~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~-~~~~l~i~~~~  404 (860)
                      ||||||||||+|+.      .++|||||++++||+.+........|.|++||+|||||.++|||.+.. ....+.+++++
T Consensus        82 ~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~  161 (341)
T cd01372          82 QTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDS  161 (341)
T ss_pred             CCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECC
Confidence            99999999999974      579999999999999999877778999999999999999999998653 35689999999


Q ss_pred             CCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc----------CCceeEeeEEE
Q 037169          405 EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI----------NGECTKSKLWL  474 (860)
Q Consensus       405 ~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~----------~~~~~~skL~l  474 (860)
                      .++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+..          ......|+|+|
T Consensus       162 ~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~  241 (341)
T cd01372         162 KGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHF  241 (341)
T ss_pred             CCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEE
Confidence            99999999999999999999999999999999999999999999999999999988763          34567899999


Q ss_pred             eecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCC---CcccCCCCcchhhcccccCCCcceeEEEecCCCC
Q 037169          475 VDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKS---GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSE  551 (860)
Q Consensus       475 VDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~---~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~  551 (860)
                      |||||||+..++++.|.+++|+..||+||.+|++||.+|+.++   .|||||+||||+||+|+|||+++|+||+||||..
T Consensus       242 VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~  321 (341)
T cd01372         242 VDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPAD  321 (341)
T ss_pred             EECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCh
Confidence            9999999999999999999999999999999999999999876   7999999999999999999999999999999999


Q ss_pred             CCHHhHHHHHHHHHHhhccc
Q 037169          552 QDLGETLSSLNFASRVRGVE  571 (860)
Q Consensus       552 ~~~~ETl~TL~fA~r~r~I~  571 (860)
                      .+++||++||+||+|+++|+
T Consensus       322 ~~~~eTl~tL~~a~~~~~ik  341 (341)
T cd01372         322 SNFEETLNTLKYANRARNIK  341 (341)
T ss_pred             hhHHHHHHHHHHHHHhccCC
Confidence            99999999999999999985

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

Probab=100.00  E-value=2e-69  Score=597.61  Aligned_cols=307  Identities=59%  Similarity=0.866  Sum_probs=277.2

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEEecCC--------------------CCCccceeEEEEeccchhhHHHhhCCccE
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVDFSAA--------------------KDGELGILTVDVFADASPLVTSVLDGYNV  325 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~--------------------~~~~~~~~~~dVf~~v~plV~~~l~G~N~  325 (860)
                      .|+||||||+||+.+.|.. ....++.++..                    ..+.....+.+||..+.|+|+++++|+|+
T Consensus         1 ~~~i~V~vRirP~~~~e~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~~~   79 (329)
T cd01366           1 KGNIRVFCRVRPLLPSEST-EYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNV   79 (329)
T ss_pred             CCCEEEEEEcCcCCccccC-CCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCCce
Confidence            3899999999999988752 22222222222                    11111222356777799999999999999


Q ss_pred             EEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcC-CceEEEEEEEEEEeccccccccCCCC-CCCceEEEec
Q 037169          326 CIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKE-TFTYSISVSALEVYNEQIRDLLDTSP-TSKKLEIRQA  403 (860)
Q Consensus       326 ~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~i~DLL~~~~-~~~~l~i~~~  403 (860)
                      ||||||+|||||||||+|+..++||+||++++||..+..... ++.|.|++||+|||||.++|||++.+ ..+.+.++++
T Consensus        80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~  159 (329)
T cd01366          80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD  159 (329)
T ss_pred             EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence            999999999999999999999999999999999999987654 68999999999999999999998653 3578999999


Q ss_pred             CCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcccc
Q 037169          404 SEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERL  483 (860)
Q Consensus       404 ~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~  483 (860)
                      +.++++++|++++.|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+...+....|+|+||||||||+.
T Consensus       160 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE~~  239 (329)
T cd01366         160 SKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSERL  239 (329)
T ss_pred             CCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999888788888999999999999999


Q ss_pred             cccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHH
Q 037169          484 AKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNF  563 (860)
Q Consensus       484 ~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~f  563 (860)
                      .+.++.|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+++|||+++|+||+||||...+++||++||+|
T Consensus       240 ~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~  319 (329)
T cd01366         240 KKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRF  319 (329)
T ss_pred             ccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccc
Q 037169          564 ASRVRGVELS  573 (860)
Q Consensus       564 A~r~r~I~~~  573 (860)
                      |+++++|+++
T Consensus       320 a~~~~~i~~~  329 (329)
T cd01366         320 ASRVRSVELG  329 (329)
T ss_pred             HHHhhcccCC
Confidence            9999999864

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

Probab=100.00  E-value=3.1e-69  Score=594.33  Aligned_cols=298  Identities=40%  Similarity=0.606  Sum_probs=266.3

Q ss_pred             CeEEEEEeCCCCchhhhCCCceEEEecC-----------------CCCCccceeEEEEecc-chhhHHHhhCCccEEEEe
Q 037169          268 NIRVFCRCRPLSKEEASAGHAMVVDFSA-----------------AKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFA  329 (860)
Q Consensus       268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~-----------------~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~Ifa  329 (860)
                      ||+||||+||+...|... ...++.++.                 +..+.....+.+||.. +.|+|+++++|||+||||
T Consensus         1 ~V~V~vRvRP~~~~e~~~-~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a   79 (321)
T cd01374           1 KIKVSVRVRPLNPRESDN-EQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA   79 (321)
T ss_pred             CeEEEEEcCcCCcccccC-CcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence            799999999999887632 222222222                 1222222333557766 689999999999999999


Q ss_pred             eccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCCCceE
Q 037169          330 YGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHH  409 (860)
Q Consensus       330 YGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~g~~~  409 (860)
                      ||||||||||||+|+..++||+||++++||..+.... ...|.|++||+|||||.|+|||++.  ...+.+++++.++++
T Consensus        80 yG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~--~~~l~i~~~~~~~~~  156 (321)
T cd01374          80 YGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPS--PQELRIREDPNKGVV  156 (321)
T ss_pred             ecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCC--CCCceEEECCCCCEE
Confidence            9999999999999999999999999999999997655 4589999999999999999999854  367999999999999


Q ss_pred             ecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC---CceeEeeEEEeecCCccccccc
Q 037169          410 VPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN---GECTKSKLWLVDLAGSERLAKT  486 (860)
Q Consensus       410 v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~---~~~~~skL~lVDLAGSEr~~~t  486 (860)
                      ++|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.......   +....|+|+|||||||||..+.
T Consensus       157 v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~  236 (321)
T cd01374         157 VAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQT  236 (321)
T ss_pred             eCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccC
Confidence            9999999999999999999999999999999999999999999999999887655   5677899999999999999998


Q ss_pred             ccchhchHHHhHhhhhHHHHHHHHHHhccCC--CcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHH
Q 037169          487 EVQGERLKEAQNINRSLSALGDVISSLATKS--GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFA  564 (860)
Q Consensus       487 ~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~--~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA  564 (860)
                      + .+.+++|+.+||+||++|++||.+|+.+.  .|||||+||||+||+++|||+++|+||+||||...+++||++||+||
T Consensus       237 ~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a  315 (321)
T cd01374         237 G-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFA  315 (321)
T ss_pred             C-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHH
Confidence            8 89999999999999999999999999975  99999999999999999999999999999999999999999999999


Q ss_pred             HHhhcc
Q 037169          565 SRVRGV  570 (860)
Q Consensus       565 ~r~r~I  570 (860)
                      +|++.|
T Consensus       316 ~r~~~i  321 (321)
T cd01374         316 SRAKKV  321 (321)
T ss_pred             HHHhcC
Confidence            999876

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

Probab=100.00  E-value=6.7e-69  Score=594.54  Aligned_cols=299  Identities=45%  Similarity=0.668  Sum_probs=264.7

Q ss_pred             CeEEEEEeCCCCchhhhC------CCce------------------EEEecCCCCCccceeEEEEecc-chhhHHHhhCC
Q 037169          268 NIRVFCRCRPLSKEEASA------GHAM------------------VVDFSAAKDGELGILTVDVFAD-ASPLVTSVLDG  322 (860)
Q Consensus       268 nIrV~~RvRP~~~~E~~~------~~~~------------------~v~~~~~~~~~~~~~~~dVf~~-v~plV~~~l~G  322 (860)
                      .||||||+||+...+...      +...                  --.|.++..++. ..+.+||+. +.|+|+++++|
T Consensus         1 ~i~V~vRvRP~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G   79 (334)
T cd01375           1 TIQVFVRVRPTPTKQGSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDG   79 (334)
T ss_pred             CeEEEEECCCCCCCCCccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCC
Confidence            489999999998744321      0000                  011333334444 455678877 57999999999


Q ss_pred             ccEEEEeeccCCCCccccccCCC---CCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCC----CC
Q 037169          323 YNVCIFAYGQTGTGKTFTMEGTQ---QNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSP----TS  395 (860)
Q Consensus       323 ~N~~IfaYGqTGSGKTyTM~G~~---~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~----~~  395 (860)
                      ||+||||||||||||||||+|+.   .++||+||++++||+.++... +..|.|++||+|||||.++|||++.+    ..
T Consensus        80 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~  158 (334)
T cd01375          80 YNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEALESL  158 (334)
T ss_pred             CccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCccccccC
Confidence            99999999999999999999986   478999999999999997654 46899999999999999999998764    34


Q ss_pred             CceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEe--eccCCceeEeeEE
Q 037169          396 KKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK--NLINGECTKSKLW  473 (860)
Q Consensus       396 ~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~--~~~~~~~~~skL~  473 (860)
                      +.+.+++++.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.  .........|+|+
T Consensus       159 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~  238 (334)
T cd01375         159 PAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLN  238 (334)
T ss_pred             CceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999987  3344456789999


Q ss_pred             EeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCC-CcccCCCCcchhhcccccCCCcceeEEEecCCCCC
Q 037169          474 LVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKS-GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQ  552 (860)
Q Consensus       474 lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~  552 (860)
                      |||||||||..++++.|.+++|+..||+||++|++||.+|+.++ .||||||||||+||+|+|||+|+|+||+||||...
T Consensus       239 ~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~  318 (334)
T cd01375         239 LVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPS  318 (334)
T ss_pred             EEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchh
Confidence            99999999999999999999999999999999999999999988 99999999999999999999999999999999999


Q ss_pred             CHHhHHHHHHHHHHhh
Q 037169          553 DLGETLSSLNFASRVR  568 (860)
Q Consensus       553 ~~~ETl~TL~fA~r~r  568 (860)
                      +++||++||+||+|++
T Consensus       319 ~~~eTl~TL~fa~r~~  334 (334)
T cd01375         319 NLDETLSTLRFAQRVA  334 (334)
T ss_pred             hHHHHHHHHHHHHhcC
Confidence            9999999999999984

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80

>KOG0247 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=1.8e-68  Score=606.09  Aligned_cols=309  Identities=38%  Similarity=0.592  Sum_probs=270.3

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEE--------------------------ecCCCCCccceeEEEEecc-chhhHHH
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVD--------------------------FSAAKDGELGILTVDVFAD-ASPLVTS  318 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~--------------------------~~~~~~~~~~~~~~dVf~~-v~plV~~  318 (860)
                      +..+.||||+||+.....+.|+..+++                          |.+.+.|+....+.|||+. +.|+|.+
T Consensus        30 ~d~v~v~~rvrP~~~~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~d  109 (809)
T KOG0247|consen   30 KDPVLVVCRVRPLSDASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKD  109 (809)
T ss_pred             hcchheeEeecCCCCCccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHHHH
Confidence            467899999999885333333333322                          3333444445555778877 7899999


Q ss_pred             hhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh---------------------------------
Q 037169          319 VLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER---------------------------------  365 (860)
Q Consensus       319 ~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~---------------------------------  365 (860)
                      ++.|.|..+|+||.|||||||||+|++.++||+||+++.||..++..                                 
T Consensus       110 lLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~  189 (809)
T KOG0247|consen  110 LLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAML  189 (809)
T ss_pred             HHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhcc
Confidence            99999999999999999999999999999999999999999865321                                 


Q ss_pred             -------------------------------cCCceEEEEEEEEEEeccccccccCCCCCC----CceEEEecCCCceEe
Q 037169          366 -------------------------------KETFTYSISVSALEVYNEQIRDLLDTSPTS----KKLEIRQASEGFHHV  410 (860)
Q Consensus       366 -------------------------------~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~----~~l~i~~~~~g~~~v  410 (860)
                                                     +.+..|+|+|||+|||||.|||||.+.+..    +...++++.+|..||
T Consensus       190 nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~V  269 (809)
T KOG0247|consen  190 NDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYV  269 (809)
T ss_pred             ccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCeee
Confidence                                           123579999999999999999999876542    225678999999999


Q ss_pred             cCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc--CCceeEeeEEEeecCCccccccccc
Q 037169          411 PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI--NGECTKSKLWLVDLAGSERLAKTEV  488 (860)
Q Consensus       411 ~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~--~~~~~~skL~lVDLAGSEr~~~t~~  488 (860)
                      .|+++|.|.+.+|++++|+.|.++|++++|.+|..|||||+||+|.+.+.+..  .+..+.|.|+|||||||||..++++
T Consensus       270 kgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~  349 (809)
T KOG0247|consen  270 KGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQN  349 (809)
T ss_pred             ccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccccc
Confidence            99999999999999999999999999999999999999999999999887765  5667899999999999999999999


Q ss_pred             chhchHHHhHhhhhHHHHHHHHHHhccC-----CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHH
Q 037169          489 QGERLKEAQNINRSLSALGDVISSLATK-----SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNF  563 (860)
Q Consensus       489 ~g~rlkE~~~INkSL~aLg~vI~aL~~~-----~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~f  563 (860)
                      .|.||+||++||.||.+||+||.+|+.+     +.+|||||||||++++.+|.|.++.+||+||+|.+.+|+|+++.|+|
T Consensus       350 sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkF  429 (809)
T KOG0247|consen  350 SGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKF  429 (809)
T ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHH
Confidence            9999999999999999999999999863     36999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccc
Q 037169          564 ASRVRGVELSP  574 (860)
Q Consensus       564 A~r~r~I~~~p  574 (860)
                      |+.+..|.+.+
T Consensus       430 aeiaq~v~v~~  440 (809)
T KOG0247|consen  430 AEIAQEVEVAR  440 (809)
T ss_pred             HHhcccccccC
Confidence            99999997654

>smart00129 KISc Kinesin motor, catalytic domain

Probab=100.00  E-value=4.7e-66  Score=571.98  Aligned_cols=307  Identities=53%  Similarity=0.773  Sum_probs=277.3

Q ss_pred             CeEEEEEeCCCCchhhhCCCceEEEecCCCC-----------CccceeE-----------EEEecc-chhhHHHhhCCcc
Q 037169          268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKD-----------GELGILT-----------VDVFAD-ASPLVTSVLDGYN  324 (860)
Q Consensus       268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~~~~-----------~~~~~~~-----------~dVf~~-v~plV~~~l~G~N  324 (860)
                      +|+|+|||||+...|...+...++.+.....           +....+.           .+||.. +.|+|+++++|+|
T Consensus         1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~   80 (335)
T smart00129        1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN   80 (335)
T ss_pred             CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence            6899999999999987766555555543311           1111222           345554 5799999999999


Q ss_pred             EEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecC
Q 037169          325 VCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQAS  404 (860)
Q Consensus       325 ~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~  404 (860)
                      +||||||+|||||||||+|++.++||+||++++||+.+........|+|++||+|||||.++|||++.  .+.+.+++++
T Consensus        81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~--~~~l~i~~~~  158 (335)
T smart00129       81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS--PKKLEIREDK  158 (335)
T ss_pred             eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--CCCcEEEECC
Confidence            99999999999999999999999999999999999999887767899999999999999999999854  5679999999


Q ss_pred             CCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEe--eccCCceeEeeEEEeecCCccc
Q 037169          405 EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK--NLINGECTKSKLWLVDLAGSER  482 (860)
Q Consensus       405 ~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~--~~~~~~~~~skL~lVDLAGSEr  482 (860)
                      .+++++.|++++.|.|++|++.++..|..+|.+++|.+|..|||||+||+|+|.+.  +...+....|+|+||||||||+
T Consensus       159 ~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~  238 (335)
T smart00129      159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSER  238 (335)
T ss_pred             CCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCc
Confidence            99999999999999999999999999999999999999999999999999999966  5556667899999999999999


Q ss_pred             ccccccchhchHHHhHhhhhHHHHHHHHHHhcc--CCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHH
Q 037169          483 LAKTEVQGERLKEAQNINRSLSALGDVISSLAT--KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSS  560 (860)
Q Consensus       483 ~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~--~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~T  560 (860)
                      ..+.++.|.+++|+..||+||.+|++||.+|+.  +..|||||+|+||+||+++|||+++|+||+||||...+++||++|
T Consensus       239 ~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~t  318 (335)
T smart00129      239 ASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLST  318 (335)
T ss_pred             cccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHH
Confidence            999999999999999999999999999999998  677999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccccc
Q 037169          561 LNFASRVRGVELSPAR  576 (860)
Q Consensus       561 L~fA~r~r~I~~~p~~  576 (860)
                      |+||+++++|++.|.+
T Consensus       319 L~~a~~~~~i~~~p~~  334 (335)
T smart00129      319 LRFASRAKEIKNKAIV  334 (335)
T ss_pred             HHHHHHHhhcccCCCc
Confidence            9999999999999965

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=100.00  E-value=1.3e-65  Score=568.25  Aligned_cols=297  Identities=47%  Similarity=0.713  Sum_probs=262.9

Q ss_pred             EeCCCCchhhhCCCceEEEec-----------------------CCCCCccceeEEEEecc-chhhHHHhhCCccEEEEe
Q 037169          274 RCRPLSKEEASAGHAMVVDFS-----------------------AAKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFA  329 (860)
Q Consensus       274 RvRP~~~~E~~~~~~~~v~~~-----------------------~~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~Ifa  329 (860)
                      ||||+++.|...+....+...                       ++..+.....+.+||.. +.|+|+++++|||+||||
T Consensus         1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a   80 (335)
T PF00225_consen    1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA   80 (335)
T ss_dssp             EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred             CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence            899999999887766544332                       11111111122456666 699999999999999999


Q ss_pred             eccCCCCccccccCC--CCCCCchhhHHHHHHHHHHHhcCC--ceEEEEEEEEEEeccccccccCCCC--CCCceEEEec
Q 037169          330 YGQTGTGKTFTMEGT--QQNRGVNYRTLELLFKIAEERKET--FTYSISVSALEVYNEQIRDLLDTSP--TSKKLEIRQA  403 (860)
Q Consensus       330 YGqTGSGKTyTM~G~--~~~~GIipRal~~LF~~~~~~~~~--~~~~V~vS~lEIYnE~i~DLL~~~~--~~~~l~i~~~  403 (860)
                      ||+|||||||||+|+  ..++||+||++++||..+......  +.|.|+|||+|||||.|+|||++.+  ..+.+.++++
T Consensus        81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~  160 (335)
T PF00225_consen   81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED  160 (335)
T ss_dssp             EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred             eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence            999999999999999  899999999999999999987664  7999999999999999999999763  3468999999


Q ss_pred             CCCc-eEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCc----eeEeeEEEeecC
Q 037169          404 SEGF-HHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGE----CTKSKLWLVDLA  478 (860)
Q Consensus       404 ~~g~-~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~----~~~skL~lVDLA  478 (860)
                      +..+ ++|.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|+|.+.......    ...|+|+|||||
T Consensus       161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa  240 (335)
T PF00225_consen  161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA  240 (335)
T ss_dssp             TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred             cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence            9865 99999999999999999999999999999999999999999999999999998876654    478999999999


Q ss_pred             Cccccccccc-chhchHHHhHhhhhHHHHHHHHHHhccC--CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHH
Q 037169          479 GSERLAKTEV-QGERLKEAQNINRSLSALGDVISSLATK--SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLG  555 (860)
Q Consensus       479 GSEr~~~t~~-~g~rlkE~~~INkSL~aLg~vI~aL~~~--~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~  555 (860)
                      |||+..+.++ .+.+++|+..||+||.+|++||.+|+.+  ..|||||+||||+||+|+|||||+|+||+||||...+++
T Consensus       241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~  320 (335)
T PF00225_consen  241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE  320 (335)
T ss_dssp             ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred             cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence            9999999886 4888999999999999999999999998  899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhcc
Q 037169          556 ETLSSLNFASRVRGV  570 (860)
Q Consensus       556 ETl~TL~fA~r~r~I  570 (860)
                      ||++||+||++++.|
T Consensus       321 eTl~tL~fa~~~~~I  335 (335)
T PF00225_consen  321 ETLSTLRFASRAREI  335 (335)
T ss_dssp             HHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999999986

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....

>cd00106 KISc Kinesin motor domain

Probab=100.00  E-value=1.1e-64  Score=559.18  Aligned_cols=300  Identities=50%  Similarity=0.736  Sum_probs=266.8

Q ss_pred             CeEEEEEeCCCCchhhhCCCceEEEecCC----------------------CCCccceeEEEEecc-chhhHHHhhCCcc
Q 037169          268 NIRVFCRCRPLSKEEASAGHAMVVDFSAA----------------------KDGELGILTVDVFAD-ASPLVTSVLDGYN  324 (860)
Q Consensus       268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~~----------------------~~~~~~~~~~dVf~~-v~plV~~~l~G~N  324 (860)
                      +|+||||+||+...|.. +...++.++..                      ..+.....+.+||.. +.|+|+++++|+|
T Consensus         1 ~i~V~vRvrP~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~   79 (328)
T cd00106           1 NIRVVVRIRPLNGRESK-SEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN   79 (328)
T ss_pred             CeEEEEEcCCCCccccc-CCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence            69999999999887622 22223333221                      111111222446655 5699999999999


Q ss_pred             EEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcC-CceEEEEEEEEEEeccccccccCCCCCCCceEEEec
Q 037169          325 VCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKE-TFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQA  403 (860)
Q Consensus       325 ~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~  403 (860)
                      +||||||+|||||||||+|+..++||+||++++||+.+..... ...|.|++||+|||+|.|+|||++.+....+.++++
T Consensus        80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~  159 (328)
T cd00106          80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLRED  159 (328)
T ss_pred             eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEc
Confidence            9999999999999999999999999999999999999987653 568999999999999999999986544678999999


Q ss_pred             CCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCc--eeEeeEEEeecCCcc
Q 037169          404 SEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGE--CTKSKLWLVDLAGSE  481 (860)
Q Consensus       404 ~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~--~~~skL~lVDLAGSE  481 (860)
                      +.+++++.|++++.|.|++|++.++..|.++|.+++|.+|..|||||+||+|+|...+.....  ...|+|+||||||||
T Consensus       160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse  239 (328)
T cd00106         160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSE  239 (328)
T ss_pred             CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCC
Confidence            999999999999999999999999999999999999999999999999999999998876655  789999999999999


Q ss_pred             cccccccchhchHHHhHhhhhHHHHHHHHHHhccCC--CcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHH
Q 037169          482 RLAKTEVQGERLKEAQNINRSLSALGDVISSLATKS--GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLS  559 (860)
Q Consensus       482 r~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~--~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~  559 (860)
                      +..+++..+.+++|+..||+||++|++||.+|+.+.  .|||||+||||+||+|+|||+++|+||+||||...+++||++
T Consensus       240 ~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~  319 (328)
T cd00106         240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLS  319 (328)
T ss_pred             cccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence            999999999999999999999999999999999988  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 037169          560 SLNFASRVR  568 (860)
Q Consensus       560 TL~fA~r~r  568 (860)
                      ||+||+|+|
T Consensus       320 tL~~a~r~~  328 (328)
T cd00106         320 TLRFASRAK  328 (328)
T ss_pred             HHHHHHhcC
Confidence            999999985

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil

>KOG0246 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=5.7e-63  Score=547.60  Aligned_cols=303  Identities=32%  Similarity=0.496  Sum_probs=261.2

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEecCCC--------------------------CCccceeEEEEecc-chhhHHHh
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK--------------------------DGELGILTVDVFAD-ASPLVTSV  319 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~--------------------------~~~~~~~~~dVf~~-v~plV~~~  319 (860)
                      -.|.|+||-||++..|.......+++.....                          .++-...+.+||.- +.|||..+
T Consensus       208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I  287 (676)
T KOG0246|consen  208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI  287 (676)
T ss_pred             ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence            5799999999999999766555455432111                          11111112334532 79999999


Q ss_pred             hCCccEEEEeeccCCCCccccccCCCC------CCCchhhHHHHHHHHHHH-hcCCceEEEEEEEEEEeccccccccCCC
Q 037169          320 LDGYNVCIFAYGQTGTGKTFTMEGTQQ------NRGVNYRTLELLFKIAEE-RKETFTYSISVSALEVYNEQIRDLLDTS  392 (860)
Q Consensus       320 l~G~N~~IfaYGqTGSGKTyTM~G~~~------~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~i~DLL~~~  392 (860)
                      |+|--+|+||||||||||||||.|+-.      ..||..++.+++|..+.. .-....+.|++||||||+.++||||+. 
T Consensus       288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~-  366 (676)
T KOG0246|consen  288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND-  366 (676)
T ss_pred             HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-
Confidence            999999999999999999999988742      359999999999999875 233467899999999999999999974 


Q ss_pred             CCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeE
Q 037169          393 PTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL  472 (860)
Q Consensus       393 ~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL  472 (860)
                        .++|.+.+|.++.+.|.||++..|.+.+|++++|..|+..|+++.|..|.+|||||+||+|.+....   +....|++
T Consensus       367 --k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~hGKf  441 (676)
T KOG0246|consen  367 --KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKLHGKF  441 (676)
T ss_pred             --ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cceeEeEE
Confidence              5789999999999999999999999999999999999999999999999999999999999997642   24678999


Q ss_pred             EEeecCCccccccccc-chhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCC-CcceeEEEecCCC
Q 037169          473 WLVDLAGSERLAKTEV-QGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGG-DSKTLMFLQISPS  550 (860)
Q Consensus       473 ~lVDLAGSEr~~~t~~-~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgG-nskT~mI~~VSP~  550 (860)
                      +||||||+||...+.. ..+...|+..|||||+||..||.||...+.|+|||.||||++|+|||=| ||+|+||+||||.
T Consensus       442 SlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg  521 (676)
T KOG0246|consen  442 SLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPG  521 (676)
T ss_pred             EEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCC
Confidence            9999999999987654 4556679999999999999999999999999999999999999999977 9999999999999


Q ss_pred             CCCHHhHHHHHHHHHHhhccccccc
Q 037169          551 EQDLGETLSSLNFASRVRGVELSPA  575 (860)
Q Consensus       551 ~~~~~ETl~TL~fA~r~r~I~~~p~  575 (860)
                      ..+++.||+|||||.|+|.....+.
T Consensus       522 ~~ScEhTLNTLRYAdRVKeLsv~~~  546 (676)
T KOG0246|consen  522 ISSCEHTLNTLRYADRVKELSVDGG  546 (676)
T ss_pred             cchhhhhHHHHHHHHHHHhhcCCCC
Confidence            9999999999999999998765443

>KOG0244 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=2e-63  Score=580.15  Aligned_cols=323  Identities=41%  Similarity=0.603  Sum_probs=281.6

Q ss_pred             eCCCCchhhhCCCceEEEecCCCC----CccceeEEE-Eec----------c-chhhHHHhhCCccEEEEeeccCCCCcc
Q 037169          275 CRPLSKEEASAGHAMVVDFSAAKD----GELGILTVD-VFA----------D-ASPLVTSVLDGYNVCIFAYGQTGTGKT  338 (860)
Q Consensus       275 vRP~~~~E~~~~~~~~v~~~~~~~----~~~~~~~~d-Vf~----------~-v~plV~~~l~G~N~~IfaYGqTGSGKT  338 (860)
                      |||+...|...|+..++.|.+...    +.-..+++| ||.          . |.|+++.+|+|||++++||||||||||
T Consensus         1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkT   80 (913)
T KOG0244|consen    1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKT   80 (913)
T ss_pred             CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCce
Confidence            699999999999988888654321    111223333 332          2 789999999999999999999999999


Q ss_pred             ccccCC----CCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCCCceEecCee
Q 037169          339 FTMEGT----QQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLT  414 (860)
Q Consensus       339 yTM~G~----~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~g~~~v~gl~  414 (860)
                      |||.+.    ..+.|+|||++.++|..+..... +.|.|.|||+|||++.|+|||.+......+.+++ +.|.+.++|++
T Consensus        81 ytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~glt  158 (913)
T KOG0244|consen   81 YTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRGLT  158 (913)
T ss_pred             eecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEeeh
Confidence            999876    23459999999999999987655 7899999999999999999998654445577777 78989999999


Q ss_pred             EEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEee-ccCCceeEeeEEEeecCCcccccccccchhch
Q 037169          415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKN-LINGECTKSKLWLVDLAGSERLAKTEVQGERL  493 (860)
Q Consensus       415 e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~-~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl  493 (860)
                      ++.|.+..++...+..|...|++++|+||..|||||+||++.+++.. .......+++|+|||||||||.++|+++|+|+
T Consensus       159 e~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdrl  238 (913)
T KOG0244|consen  159 EKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDRL  238 (913)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhhh
Confidence            99999999999999999999999999999999999999999998743 33334567999999999999999999999999


Q ss_pred             HHHhHhhhhHHHHHHHHHHhccCCC--cccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhhccc
Q 037169          494 KEAQNINRSLSALGDVISSLATKSG--HIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVE  571 (860)
Q Consensus       494 kE~~~INkSL~aLg~vI~aL~~~~~--hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~  571 (860)
                      +|+.+||.+|++||+||+||.....  ||||||||||+||||+||||+.|+||+||||+..+++||++||+||.|++.|+
T Consensus       239 KEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~ik  318 (913)
T KOG0244|consen  239 KEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIK  318 (913)
T ss_pred             hhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhc
Confidence            9999999999999999999987554  99999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccC-hHHHHHHHHHHHHHHHHhc
Q 037169          572 LSPARKQID-ISKLQKVKMMLEKTKQEVG  599 (860)
Q Consensus       572 ~~p~~~~~~-~~~~~~lk~~l~~~k~e~~  599 (860)
                      |+|..++.. ..++..++.+++.++.++-
T Consensus       319 nk~vvN~d~~~~~~~~lK~ql~~l~~ell  347 (913)
T KOG0244|consen  319 NKPVVNQDPKSFEMLKLKAQLEPLQVELL  347 (913)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            999998843 3467778888877766654

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=5.2e-57  Score=528.15  Aligned_cols=331  Identities=40%  Similarity=0.584  Sum_probs=288.4

Q ss_pred             cCCCeEEEEEeCCCCchhhhC---------CCce-EEEecCCCCCccceeEEEEecc-chhhHHHhhCCccEEEEeeccC
Q 037169          265 VLGNIRVFCRCRPLSKEEASA---------GHAM-VVDFSAAKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFAYGQT  333 (860)
Q Consensus       265 ~~gnIrV~~RvRP~~~~E~~~---------~~~~-~v~~~~~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~IfaYGqT  333 (860)
                      ...+++++++..|-...+...         .... ...|.+++.+.....+.+||.. +.|++++++.||||||||||||
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqT   99 (568)
T COG5059          20 SVSDIKSTIRIIPGELGERLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQT   99 (568)
T ss_pred             eecCceEEEeecCCCcchheeecccccccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEccc
Confidence            358899999999965542100         0111 2234445555666667788877 7899999999999999999999


Q ss_pred             CCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCCCceEecCe
Q 037169          334 GTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGL  413 (860)
Q Consensus       334 GSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~g~~~v~gl  413 (860)
                      ||||||||.|...++||||+++..||+.+.....+..|.|.+||+|||||.++|||.+....  +.++++..+++.|.|+
T Consensus       100 gsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~--~~~~~~~~~~v~v~~l  177 (568)
T COG5059         100 GSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEES--LNIREDSLLGVKVAGL  177 (568)
T ss_pred             CCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccc--ccccccCCCceEeecc
Confidence            99999999999999999999999999999987767789999999999999999999864433  7788999999999999


Q ss_pred             eEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcccccccccchhch
Q 037169          414 TEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERL  493 (860)
Q Consensus       414 ~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl  493 (860)
                      ++..+.+.+|++.+|..|..+|+++.|.+|..|||||+||++.+.+.+...+....++|+||||||||+...++..+.|+
T Consensus       178 ~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~  257 (568)
T COG5059         178 TEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRL  257 (568)
T ss_pred             eEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchh
Confidence            99999999999999999999999999999999999999999999999887777777899999999999999999999999


Q ss_pred             HHHhHhhhhHHHHHHHHHHhcc--CCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhhccc
Q 037169          494 KEAQNINRSLSALGDVISSLAT--KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVE  571 (860)
Q Consensus       494 kE~~~INkSL~aLg~vI~aL~~--~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~  571 (860)
                      +|+..||+||.+||+||.+|..  +..|||||+|||||||+++|||+++|+|||||+|...+++||++||+||.|++.|+
T Consensus       258 ~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~  337 (568)
T COG5059         258 KEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIK  337 (568)
T ss_pred             hhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999997  78899999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc--cChHHHHHHHHHHHHHHHH
Q 037169          572 LSPARKQ--IDISKLQKVKMMLEKTKQE  597 (860)
Q Consensus       572 ~~p~~~~--~~~~~~~~lk~~l~~~k~e  597 (860)
                      +.+..+.  ....++..++..+...+..
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~  365 (568)
T COG5059         338 NKIQVNSSSDSSREIEEIKFDLSEDRSE  365 (568)
T ss_pred             CcccccCcCcchHHHHHHHhhhhhhhhh
Confidence            9988774  2233444444444444333

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=100.00  E-value=4e-51  Score=417.14  Aligned_cols=176  Identities=55%  Similarity=0.846  Sum_probs=169.1

Q ss_pred             EeccchhhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEecccccc
Q 037169          308 VFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRD  387 (860)
Q Consensus       308 Vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~D  387 (860)
                      ||..+.|+|+.+++|||+||||||||||||||||+|++.++||+||++++                              
T Consensus         8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------   57 (186)
T cd01363           8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------   57 (186)
T ss_pred             HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence            89987799999999999999999999999999999999999999999987                              


Q ss_pred             ccCCCCCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC---
Q 037169          388 LLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN---  464 (860)
Q Consensus       388 LL~~~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~---  464 (860)
                                                          ++.++..|..+|.+++|.+|..|||||+||+|++...+...   
T Consensus        58 ------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~  101 (186)
T cd01363          58 ------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASAT  101 (186)
T ss_pred             ------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCc
Confidence                                                88999999999999999999999999999999999877654   


Q ss_pred             CceeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEE
Q 037169          465 GECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF  544 (860)
Q Consensus       465 ~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI  544 (860)
                      +....|+|+||||||||+..+++..+.+++|+..||+||++|++||.+|++++.|||||+||||+||+|+|||||+|+||
T Consensus       102 ~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i  181 (186)
T cd01363         102 EQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMV  181 (186)
T ss_pred             cceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEE
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCC
Q 037169          545 LQISP  549 (860)
Q Consensus       545 ~~VSP  549 (860)
                      +||||
T Consensus       182 ~~vsP  186 (186)
T cd01363         182 ACISP  186 (186)
T ss_pred             EEeCc
Confidence            99999

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.83  E-value=6.7e-21  Score=192.92  Aligned_cols=98  Identities=41%  Similarity=0.700  Sum_probs=73.2

Q ss_pred             cccccccccc--CceEEEeeCCCCcEEEEEEeeecccCC----CCCcceEEEEEECCEEEeeccchhhccCCCc-ceEE-
Q 037169            2 AVLYQSARFG--NFSYRIGNLSPGDYLVDLHFAEIVNAN----GPKGMRVFDVFMQEEKVLLEIDIYSIVGANK-PLQV-   73 (860)
Q Consensus         2 p~lYqTaR~g--~~sY~f~~v~~G~Y~V~LhFaEi~~~~----~~~g~RvFdV~ing~~vl~~fDI~~~~G~~~-a~~~-   73 (860)
                      +.||||+|+|  .|+|.||.+++|.|.|+|||||+++..    ..+|+|+|||+|||++++++|||++++|+.. +++. 
T Consensus        56 ~~Lyqt~R~g~~~f~Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~  135 (174)
T PF11721_consen   56 DPLYQTERYGPSSFSYDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRR  135 (174)
T ss_dssp             HHTTT-----SSSEEEEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEE
T ss_pred             hhhhHhhcCCCCceEEEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEE
Confidence            4699999998  789999779999999999999999984    4499999999999999999999999999876 6666 


Q ss_pred             E-EEEEeeCCCceEEEEEE------------ccCCCcEEEEE
Q 037169           74 V-DVRVSVGMDEVLLIRFD------------GACGSPIVNGI  102 (860)
Q Consensus        74 ~-~~~V~~~~~g~L~I~F~------------~~~g~p~InaI  102 (860)
                      + .+.|+   ||.|+|.|.            +..++|+||||
T Consensus       136 ~~~v~v~---dg~L~i~f~~~~~~~~~i~~~~~~~~p~IsaI  174 (174)
T PF11721_consen  136 FFNVTVT---DGTLNIQFVWAGKGTLCIPFIGSYGNPLISAI  174 (174)
T ss_dssp             EEEEEEE---TTEEETTEEEE--SEEEEEEESSSSSSSEEEE
T ss_pred             EEEEEEe---CCcEEEEEEecCCCcEEeeccccCCCcEEeeC
Confidence            3 56665   899999998            88999999998

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=2.1e-14  Score=172.06  Aligned_cols=106  Identities=33%  Similarity=0.474  Sum_probs=86.2

Q ss_pred             ccccccccc-----CceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECCEEEeeccchhhccCCC-cceEE-EE
Q 037169            3 VLYQSARFG-----NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGAN-KPLQV-VD   75 (860)
Q Consensus         3 ~lYqTaR~g-----~~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing~~vl~~fDI~~~~G~~-~a~~~-~~   75 (860)
                      .||||||.+     +++|.|+..++|.|+|+|||||+.......++|+|||+|||+.++++|||....|.. .+++. +.
T Consensus       253 ~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~  332 (623)
T PLN03150        253 SLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKT  332 (623)
T ss_pred             HHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeE
Confidence            389999883     488999655778999999999998655567999999999999999999997766654 44444 44


Q ss_pred             EEEeeCCCceEEEEEEccCCC-cEEEEEEEeecCCCC
Q 037169           76 VRVSVGMDEVLLIRFDGACGS-PIVNGICIKNATNVP  111 (860)
Q Consensus        76 ~~V~~~~~g~L~I~F~~~~g~-p~InaIEI~k~~~~~  111 (860)
                      +.++   +|.|+|+|.|..+. |+||||||++..+..
T Consensus       333 v~~~---~g~l~isl~p~~~s~pilNaiEI~~~~~~~  366 (623)
T PLN03150        333 VAVS---GRTLTIVLQPKKGTHAIINAIEVFEIITAE  366 (623)
T ss_pred             Eeec---CCeEEEEEeeCCCCcceeeeeeeeeccccc
Confidence            4444   58899999988776 999999999987743

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=99.19  E-value=4.5e-11  Score=133.90  Aligned_cols=102  Identities=25%  Similarity=0.350  Sum_probs=73.2

Q ss_pred             cccccccc-c------CceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECCEEEeeccchhhccCCCcceEE-E
Q 037169            3 VLYQSARF-G------NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQV-V   74 (860)
Q Consensus         3 ~lYqTaR~-g------~~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing~~vl~~fDI~~~~G~~~a~~~-~   74 (860)
                      .||+||+. +      +++|.| +.++..|.|+||||||.......++|+|||+|||+.+.++++.....+...++.. +
T Consensus       235 ~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~  313 (347)
T PF12819_consen  235 AVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDY  313 (347)
T ss_pred             HHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecce
Confidence            48999988 2      355776 4444589999999999986546678999999999998875555222222233333 4


Q ss_pred             EEEEeeCCCceEEEEEEccCCC---cEEEEEEEeec
Q 037169           75 DVRVSVGMDEVLLIRFDGACGS---PIVNGICIKNA  107 (860)
Q Consensus        75 ~~~V~~~~~g~L~I~F~~~~g~---p~InaIEI~k~  107 (860)
                      .+.+.  ..+.+.|++.+..++   |+|||+||++.
T Consensus       314 ~~~~~--~~~~~~isL~~t~~S~lppiLNalEIy~v  347 (347)
T PF12819_consen  314 VVNVP--DSGFLNISLGPTPDSTLPPILNALEIYKV  347 (347)
T ss_pred             EEEec--CCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence            44444  456799999877665   99999999973

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>PLN03150 hypothetical protein; Provisional

Probab=98.80  E-value=2.1e-08  Score=120.80  Aligned_cols=101  Identities=20%  Similarity=0.247  Sum_probs=77.4

Q ss_pred             ccccccccccC------ceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECC---EEEeeccchhhccCCCcceE
Q 037169            2 AVLYQSARFGN------FSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQE---EKVLLEIDIYSIVGANKPLQ   72 (860)
Q Consensus         2 p~lYqTaR~g~------~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing---~~vl~~fDI~~~~G~~~a~~   72 (860)
                      +.+|+|+|+.+      +.|.||..++|.|+||+||....+.+.. ...+|||+++|   .+++.+|+..     ...++
T Consensus        66 ~~~~~t~R~F~~~~g~~~cY~~~~~~~g~ylVRl~F~~~~y~~~~-~~~~Fdv~~~~~~~~tv~~~~~~~-----~~~v~  139 (623)
T PLN03150         66 APPLKTLRYFPLSDGPENCYNINRVPKGHYSVRVFFGLVAEPNFD-SEPLFDVSVEGTQISSLKSGWSSH-----DEQVF  139 (623)
T ss_pred             cchhhccccCCcccccccceEeeecCCCcEEEEEEeecCCcCCCC-CCCceEEEECcEEEEEEecCcccC-----CCcEE
Confidence            35799999944      5799977888999999999998766533 56789999999   5566666532     12344


Q ss_pred             E-EEEEEeeCCCceEEEEEEccC-CCcEEEEEEEeecCCCC
Q 037169           73 V-VDVRVSVGMDEVLLIRFDGAC-GSPIVNGICIKNATNVP  111 (860)
Q Consensus        73 ~-~~~~V~~~~~g~L~I~F~~~~-g~p~InaIEI~k~~~~~  111 (860)
                      + +.+.++   ++.|.|.|.+.. +.||||||||.+.|..-
T Consensus       140 ~E~i~~~~---~~~l~vcf~~~~~~~pFIs~iEv~~l~~~~  177 (623)
T PLN03150        140 AEALVFLT---DGSASICFHSTGHGDPAILSIEILQVDDKA  177 (623)
T ss_pred             EEEEEEec---CCcEEEEEecCCCCCCceeEEEEEEcCccc
Confidence            4 666666   778999998754 67999999999998643

>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]

Probab=98.74  E-value=4e-09  Score=111.34  Aligned_cols=109  Identities=28%  Similarity=0.397  Sum_probs=90.5

Q ss_pred             ccccccccc--CceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEEC-CEEEeeccchhhccC-CCcceEE-EEE-
Q 037169            3 VLYQSARFG--NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQ-EEKVLLEIDIYSIVG-ANKPLQV-VDV-   76 (860)
Q Consensus         3 ~lYqTaR~g--~~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~in-g~~vl~~fDI~~~~G-~~~a~~~-~~~-   76 (860)
                      .+|||+||.  .|+|..|....|+|.+.|.|||.+|.  .++..+|||.+| +..+++++||+.++| .++|... ..+ 
T Consensus       109 ily~ter~neetFgyd~pik~dgdyalvlkfaevyF~--~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~  186 (355)
T KOG3593|consen  109 ILYQTERYNEETFGYDVPIKEDGDYALVLKFAEVYFK--TCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCL  186 (355)
T ss_pred             hhhhhcccchhhhcccccccCCCceehhhhHHHHHHH--hhhhhheeeeeccceeEEeccchhhhcCCCcccccceEEEE
Confidence            589999994  58899977789999999999999998  889999999999 899999999999988 4555443 222 


Q ss_pred             ----------EEeeCCCceEEEEE-EccCCCcEEEEEEEeecCCCCCC
Q 037169           77 ----------RVSVGMDEVLLIRF-DGACGSPIVNGICIKNATNVPES  113 (860)
Q Consensus        77 ----------~V~~~~~g~L~I~F-~~~~g~p~InaIEI~k~~~~~~~  113 (860)
                                .++....|.|+|.| ++..++|.+||..|+.+.--.+|
T Consensus       187 i~~gkls~~gess~~t~gkl~le~~kg~ldnpk~~a~aIl~g~v~dvP  234 (355)
T KOG3593|consen  187 IGQGKLSVCGESSISTLGKLNLEFLKGVLDNPKDCARAILVGTVGDVP  234 (355)
T ss_pred             EcCceEEEEeeeEEeecceEEEEeecccCCChhhhhHHHhhccccccc
Confidence                      22333468899999 68889999999999998777666

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=98.46  E-value=5.7e-10  Score=132.24  Aligned_cols=247  Identities=27%  Similarity=0.317  Sum_probs=147.3

Q ss_pred             HHhhhhhccCCCeEEEEEeCCCCchhhhC-----------CCceEEEecC--CCCCcccee-----------EEEEeccc
Q 037169          257 NKMVSTIQVLGNIRVFCRCRPLSKEEASA-----------GHAMVVDFSA--AKDGELGIL-----------TVDVFADA  312 (860)
Q Consensus       257 ~~~~~~~~~~gnIrV~~RvRP~~~~E~~~-----------~~~~~v~~~~--~~~~~~~~~-----------~~dVf~~v  312 (860)
                      +.|++.++...+++|+|+|+|.+......           .-...+....  ....+...+           ...+|.+.
T Consensus       295 RlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  374 (568)
T COG5059         295 RLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQ  374 (568)
T ss_pred             HHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            45666777667999999999988442111           0001111110  000111111           12345556


Q ss_pred             hhhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEeccccccccCC
Q 037169          313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRDLLDT  391 (860)
Q Consensus       313 ~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~DLL~~  391 (860)
                      .-+++..++|    +++||++++|+++||.  ....++..-.+...|...... ...|.|...+-++++|-....++...
T Consensus       375 ~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e  448 (568)
T COG5059         375 SQLSQSSLSG----IFAYMQSLKKETETLK--SRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREE  448 (568)
T ss_pred             Hhhhhhhhhh----HHHHHhhhhhhhhccc--chhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888    9999999999999995  233455566657777765542 33456666666667762222222221


Q ss_pred             CCCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEee
Q 037169          392 SPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK  471 (860)
Q Consensus       392 ~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~sk  471 (860)
                      ........+............+.........+..... .+...+..+++..|.+++++|++|+......+...+...   
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~---  524 (568)
T COG5059         449 ELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKELS---  524 (568)
T ss_pred             hcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhhHHHH---
Confidence            1111100000000000000000011111111222222 467788899999999999999999887765544333322   


Q ss_pred             EEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhc
Q 037169          472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA  514 (860)
Q Consensus       472 L~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~  514 (860)
                      +++|||||+||. -+.+-|.++++...+|++|..++++|.++.
T Consensus       525 ~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~  566 (568)
T COG5059         525 LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG  566 (568)
T ss_pred             hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence            899999999999 999999999999999999999999998864

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=98.41  E-value=1.3e-06  Score=98.12  Aligned_cols=107  Identities=19%  Similarity=0.276  Sum_probs=73.9

Q ss_pred             ccccccccccC----ceEEEeeCCC--CcEEEEEEeeecccCCCC----CcceEEEEEECCEEEeeccchhhccCCCcce
Q 037169            2 AVLYQSARFGN----FSYRIGNLSP--GDYLVDLHFAEIVNANGP----KGMRVFDVFMQEEKVLLEIDIYSIVGANKPL   71 (860)
Q Consensus         2 p~lYqTaR~g~----~sY~f~~v~~--G~Y~V~LhFaEi~~~~~~----~g~RvFdV~ing~~vl~~fDI~~~~G~~~a~   71 (860)
                      +.+|+|+|..+    ..|.|+..++  |.|+|||||.-..+.+..    ...-.||+++++... ..+++..  ....++
T Consensus        48 ~~~y~taR~F~~g~r~cY~l~~~~~~~~~yliRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~-~tV~~~~--~~~~~~  124 (347)
T PF12819_consen   48 SPPYQTARIFPEGSRNCYTLPVTPPGGGKYLIRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFW-STVNLSN--SPSSPV  124 (347)
T ss_pred             ccccceEEEcCCCCccEEEeeccCCCCceEEEEEEeccccccccccccccCCcceEEEECCcee-EEEEecC--CCcceE
Confidence            46899999943    7799976643  499999999986655221    123468888888763 3333322  111334


Q ss_pred             EE-EEEEEeeCCCceEEEEEEccC-CC-cEEEEEEEeecCCCCCC
Q 037169           72 QV-VDVRVSVGMDEVLLIRFDGAC-GS-PIVNGICIKNATNVPES  113 (860)
Q Consensus        72 ~~-~~~~V~~~~~g~L~I~F~~~~-g~-p~InaIEI~k~~~~~~~  113 (860)
                      ++ +.+.|.  .++.|.|.|.+.. |. ||||||||++.|..--|
T Consensus       125 ~~E~ii~v~--~~~~l~vclv~~~~g~~pFIsaiEl~~lp~~ly~  167 (347)
T PF12819_consen  125 VKEFIINVT--WSDTLSVCLVPTGSGTFPFISAIELRPLPDSLYP  167 (347)
T ss_pred             EEEEEEEEc--CCCcEEEEEEeCCCCCCCceeEEEEEECCcccee
Confidence            44 566665  3578999998776 77 99999999999876553

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.78  E-value=0.18  Score=62.97  Aligned_cols=105  Identities=20%  Similarity=0.216  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH---HHHHHHHHHHHH-HHHHHHHH
Q 037169          144 MAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQA---LEKQAAKLKDVA-SLYERDKR  219 (860)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~  219 (860)
                      +.+.++++++++++......||.++...+.....+...++.+..........+...   +++++..++.-. +.++.+..
T Consensus       318 ~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~  397 (1074)
T KOG0250|consen  318 LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELE  397 (1074)
T ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            34567777777777777778888888777666665555555544444333333322   233443333332 44444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169          220 LWIIAMNELERKILIWKEEHSQLAREAHE  248 (860)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~e~~~l~~e~~~  248 (860)
                      +.+..+..|+.++..+.....+|..+...
T Consensus       398 e~e~k~~~L~~evek~e~~~~~L~~e~~~  426 (1074)
T KOG0250|consen  398 ERENKLEQLKKEVEKLEEQINSLREELNE  426 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555444433

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.13  E-value=0.55  Score=61.37  Aligned_cols=46  Identities=28%  Similarity=0.428  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169          638 SQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK  683 (860)
Q Consensus       638 ~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~  683 (860)
                      .++.........++.++.++.......++.+..+...+.+++..+.
T Consensus       814 ~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  859 (1163)
T COG1196         814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELE  859 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3333333333444445555554444444555555544544444443

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.89  E-value=0.094  Score=51.70  Aligned_cols=130  Identities=25%  Similarity=0.272  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 037169          589 MMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEIC  668 (860)
Q Consensus       589 ~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~  668 (860)
                      ..+...+.+.+...+.+..|+.++...............+.+..+..|+.++...+..+.+++.+|..+..........+
T Consensus        10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l   89 (140)
T PF10473_consen   10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL   89 (140)
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666677777777777766655443333334455666778889999999999999999999988888888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 037169          669 SNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELE  727 (860)
Q Consensus       669 ~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe  727 (860)
                      ...+.++.+|+....         .+...+...|.....+.+.+.....+|+.++.+|.
T Consensus        90 q~~q~kv~eLE~~~~---------~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L~  139 (140)
T PF10473_consen   90 QKKQEKVSELESLNS---------SLENLLQEKEQEKVQLKEESKSAVEMLQKQLKELN  139 (140)
T ss_pred             HHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            888888888876543         35566667777777777777777777777776653

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK11637 AmiB activator; Provisional

Probab=96.46  E-value=0.64  Score=54.04  Aligned_cols=10  Identities=0%  Similarity=0.159  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 037169          585 QKVKMMLEKT  594 (860)
Q Consensus       585 ~~lk~~l~~~  594 (860)
                      ..++..++..
T Consensus        50 ~~l~~qi~~~   59 (428)
T PRK11637         50 KSIQQDIAAK   59 (428)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.38  E-value=2.4  Score=53.81  Aligned_cols=56  Identities=16%  Similarity=0.405  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-hhhhchHHHHHHHHHHHHHHHHHHH
Q 037169          628 NQQEKINELESQLESK------TQLCRQLEKQLLQVS-EGMKGKEEICSNVQRKVKELENKLK  683 (860)
Q Consensus       628 ~~~~k~~ele~~l~~~------~~~~~~le~~l~~l~-~~~~~~ee~~~~lq~~~~ele~~l~  683 (860)
                      .+++.+.+++.+++..      .+.+.+|+..+..+. +..+...+.++.+.+++..++..+.
T Consensus       862 ~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~  924 (1293)
T KOG0996|consen  862 ELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIA  924 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHH
Confidence            3344444555444433      133444444444442 2222333444455555555554444

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.33  E-value=0.39  Score=47.64  Aligned_cols=80  Identities=20%  Similarity=0.323  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 037169          600 SKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELE  679 (860)
Q Consensus       600 ~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele  679 (860)
                      ...+....++..+..++......++.+..++.++..++.+++.....+......+.........    .+.++.++..||
T Consensus        11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rriq~LE   86 (143)
T PF12718_consen   11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRIQLLE   86 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhHHHHH
Confidence            3334444555555555555555556666666666666666665555555554444333222211    124555555555


Q ss_pred             HHHH
Q 037169          680 NKLK  683 (860)
Q Consensus       680 ~~l~  683 (860)
                      ..|.
T Consensus        87 eele   90 (143)
T PF12718_consen   87 EELE   90 (143)
T ss_pred             HHHH
Confidence            5544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.27  E-value=0.16  Score=62.36  Aligned_cols=107  Identities=22%  Similarity=0.348  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH---------------HHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 037169          629 QQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKE---------------EICSNVQRKVKELENKLKEHDQSENVTA  693 (860)
Q Consensus       629 ~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~e---------------e~~~~lq~~~~ele~~l~~~~q~~~~~~  693 (860)
                      .+..+..||.++.+.+.....+|++|..-+...+..+               +-.+.+.++.++||.+++.+..+-.  .
T Consensus       486 DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk--~  563 (697)
T PF09726_consen  486 DKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELK--Q  563 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence            3444566777777777777777777765543322221               2334466677777777766544321  2


Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169          694 LHHKVRELENRLKARTQE---FEVHSGMLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       694 le~ki~~lE~kl~~~~~~---~e~~~~~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      .+.++..+|.+.+++...   .+.+.+.|-..+..+++|-...|.-|
T Consensus       564 kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL  610 (697)
T PF09726_consen  564 KEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL  610 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            344555555555433332   22334444444444444444444444

; GO: 0016021 integral to membrane

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.04  E-value=0.81  Score=54.24  Aligned_cols=13  Identities=31%  Similarity=0.419  Sum_probs=8.9

Q ss_pred             eeEEEeecCCccc
Q 037169          470 SKLWLVDLAGSER  482 (860)
Q Consensus       470 skL~lVDLAGSEr  482 (860)
                      =.++.||=.|.=+
T Consensus        90 YqfcYv~~~g~V~  102 (546)
T PF07888_consen   90 YQFCYVDQKGEVR  102 (546)
T ss_pred             EEEEEECCCccEE
Confidence            3567788877655

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.97  E-value=0.42  Score=58.78  Aligned_cols=109  Identities=25%  Similarity=0.318  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhh-hhh----hHHHHHHHHHHHHHHHH---HHHHHHHH
Q 037169          643 KTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHD-QSE----NVTALHHKVRELENRLK---ARTQEFEV  714 (860)
Q Consensus       643 ~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~-q~~----~~~~le~ki~~lE~kl~---~~~~~~e~  714 (860)
                      ......+||.++.+++..++.+++.+..+..++.++...-++-. ..+    +...++.|-.-||+-|.   ..+.++=.
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfs  622 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFS  622 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33455667777777777777777777777766655543211100 000    11234555555555542   33334444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhh--hccccCCCCCCC
Q 037169          715 HSGMLQQKIAELEEKLRKKEEYATA--YCFREMPVTTPY  751 (860)
Q Consensus       715 ~~~~lq~qi~eLe~kl~~Qeeq~~~--~~~~~~~~~~p~  751 (860)
                      ....-+.+++.++..++.+++.+..  ..|.++-+.-|.
T Consensus       623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~  661 (697)
T PF09726_consen  623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS  661 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            4566677888888888888877732  334444444444

; GO: 0016021 integral to membrane

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.94  E-value=1.4  Score=47.28  Aligned_cols=79  Identities=18%  Similarity=0.307  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 037169          647 CRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAEL  726 (860)
Q Consensus       647 ~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eL  726 (860)
                      ...|..++..+.++..+++..+..+..+...++..+.         .+..++..++..+....+.++.....+.++...+
T Consensus        91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~---------~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~  161 (239)
T COG1579          91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE---------DLKERLERLEKNLAEAEARLEEEVAEIREEGQEL  161 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444443333         2333344444444444444444444444444444


Q ss_pred             HHHHHHHH
Q 037169          727 EEKLRKKE  734 (860)
Q Consensus       727 e~kl~~Qe  734 (860)
                      ..+..+..
T Consensus       162 ~~~~~~L~  169 (239)
T COG1579         162 SSKREELK  169 (239)
T ss_pred             HHHHHHHH
Confidence            33333333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.73  E-value=0.88  Score=48.78  Aligned_cols=35  Identities=23%  Similarity=0.484  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 037169          694 LHHKVRELENRLKARTQEFEVHSGMLQQKIAELEE  728 (860)
Q Consensus       694 le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~  728 (860)
                      ++.++..+..++..+...+......+...+..+.+
T Consensus       122 l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e  156 (239)
T COG1579         122 LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE  156 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444555444444444444444444444

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.61  E-value=0.81  Score=59.25  Aligned_cols=14  Identities=29%  Similarity=0.394  Sum_probs=11.9

Q ss_pred             EeeccCCCCccccc
Q 037169          328 FAYGQTGTGKTFTM  341 (860)
Q Consensus       328 faYGqTGSGKTyTM  341 (860)
                      +-+|++|||||..|
T Consensus        27 ~i~G~NGsGKS~il   40 (1164)
T TIGR02169        27 VISGPNGSGKSNIG   40 (1164)
T ss_pred             EEECCCCCCHHHHH
Confidence            34899999999876

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.59  E-value=0.48  Score=54.17  Aligned_cols=96  Identities=20%  Similarity=0.215  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 037169          648 RQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSEN-----VTALHHKVRELENRLKARTQEFEVHSGMLQQK  722 (860)
Q Consensus       648 ~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~-----~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~q  722 (860)
                      .+++.....+....+..+..+.+++.+++.+.+++..+.+...     +..+..++++++...++.....+.....|++|
T Consensus       364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQ  443 (493)
T KOG0804|consen  364 DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQ  443 (493)
T ss_pred             HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444555566666666666666554432111     12345555555555555444444333444444


Q ss_pred             HHHHHHHHHHHHHH-hhhhccc
Q 037169          723 IAELEEKLRKKEEY-ATAYCFR  743 (860)
Q Consensus       723 i~eLe~kl~~Qeeq-~~~~~~~  743 (860)
                      +.+|---+.-|++. .++.+|.
T Consensus       444 lrDlmf~le~qqklk~dt~eIq  465 (493)
T KOG0804|consen  444 LRDLMFFLEAQQKLKSDTDEIQ  465 (493)
T ss_pred             HHhHheehhhhhhhhcchhhhc
Confidence            44433333333333 3444444

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.53  E-value=0.98  Score=48.41  Aligned_cols=19  Identities=32%  Similarity=0.536  Sum_probs=9.3

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 037169          716 SGMLQQKIAELEEKLRKKE  734 (860)
Q Consensus       716 ~~~lq~qi~eLe~kl~~Qe  734 (860)
                      ...|+.++..|+.+|...+
T Consensus       199 v~~Le~~id~le~eL~~~k  217 (237)
T PF00261_consen  199 VKKLEKEIDRLEDELEKEK  217 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.48  E-value=0.91  Score=58.83  Aligned_cols=6  Identities=33%  Similarity=0.601  Sum_probs=2.3

Q ss_pred             HHHHHH
Q 037169          422 KEVWDV  427 (860)
Q Consensus       422 ~e~~~l  427 (860)
                      .++..+
T Consensus       120 ~~~~~~  125 (1164)
T TIGR02169       120 SEIHDF  125 (1164)
T ss_pred             HHHHHH
Confidence            333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=95.41  E-value=0.79  Score=54.69  Aligned_cols=132  Identities=22%  Similarity=0.297  Sum_probs=81.1

Q ss_pred             ecCCCCCCHHhHHHHHHHHHHhhcccccccccccCh--HHHHHHHHHHHH--HHHHhcChHHHHHHHHHHHHHHHHHhhc
Q 037169          546 QISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI--SKLQKVKMMLEK--TKQEVGSKDDVIQKLEENFQNLEVKAKG  621 (860)
Q Consensus       546 ~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~~--~~~~~lk~~l~~--~k~e~~~~~~~i~~le~~~~~l~~~~~~  621 (860)
                      .|||....|..-+++|.-     +|..  ..+..|.  .++..++..+..  .+.++..+++.|..|..+-..|-.+.-.
T Consensus       399 ~~ssl~~e~~QRva~lEk-----Kvqa--~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~  471 (961)
T KOG4673|consen  399 EVSSLREEYHQRVATLEK-----KVQA--LTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLA  471 (961)
T ss_pred             cccchHHHHHHHHHHHHH-----HHHH--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            467877777777777642     1111  1111111  123333444321  2335666777888777766666555555


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Q 037169          622 NVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKE  684 (860)
Q Consensus       622 ~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~  684 (860)
                      +...++.+..|+++.+..++..-+.+..|+.+...+...+.++++.-..+++.++.+...+..
T Consensus       472 qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~r  534 (961)
T KOG4673|consen  472 QSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTR  534 (961)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            566777888888887777777777777777777777777777777766666666666555443

>PRK09039 hypothetical protein; Validated

Probab=95.40  E-value=1.1  Score=50.67  Aligned_cols=17  Identities=24%  Similarity=0.280  Sum_probs=10.3

Q ss_pred             EEecCCCCCCHHhHHHHHHH
Q 037169          544 FLQISPSEQDLGETLSSLNF  563 (860)
Q Consensus       544 I~~VSP~~~~~~ETl~TL~f  563 (860)
                      =++|+|.   |-+.++||=+
T Consensus        12 ~~~~wpg---~vd~~~~ll~   28 (343)
T PRK09039         12 GVDYWPG---FVDALSTLLL   28 (343)
T ss_pred             CCCCCch---HHHHHHHHHH
Confidence            3567885   5556666644

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.36  E-value=1.2  Score=59.79  Aligned_cols=45  Identities=27%  Similarity=0.439  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHh
Q 037169          693 ALHHKVRELENRLKARTQEFEVHSG---MLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       693 ~le~ki~~lE~kl~~~~~~~e~~~~---~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      .+++++++++.++.++.++++.++.   .+..+..+|..++..+.+++
T Consensus      1094 ~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1094 QLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666677777776666666655432   23444555555555444444

>PRK11637 AmiB activator; Provisional

Probab=95.36  E-value=1.3  Score=51.41  Aligned_cols=16  Identities=25%  Similarity=0.424  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHh
Q 037169          722 KIAELEEKLRKKEEYA  737 (860)
Q Consensus       722 qi~eLe~kl~~Qeeq~  737 (860)
                      .+..|+.++.+++..+
T Consensus       220 ~l~~L~~~~~~~~~~l  235 (428)
T PRK11637        220 TLTGLESSLQKDQQQL  235 (428)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444444444444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.17  E-value=3.9  Score=45.29  Aligned_cols=68  Identities=26%  Similarity=0.367  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169          668 CSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       668 ~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      ....+.++.++...+..+..+  +..++.+...|+..+..+...+..+...++..+..++.++...+.++
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~e--l~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~  278 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAE--LESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM  278 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhh--hhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence            333444444444444433222  33466666677777777777777777777777777777777666554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.91  E-value=2.1  Score=51.34  Aligned_cols=46  Identities=22%  Similarity=0.256  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169          692 TALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       692 ~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      ..|++++...|.+.+++.+..-.-..=|-+||.-|++-|..+---|
T Consensus       615 ~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~taw  660 (961)
T KOG4673|consen  615 EDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAW  660 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHH
Confidence            3455555555555555555444444455666666666666444333

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=94.88  E-value=1.9  Score=55.84  Aligned_cols=10  Identities=50%  Similarity=0.843  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 037169          723 IAELEEKLRK  732 (860)
Q Consensus       723 i~eLe~kl~~  732 (860)
                      +.+++.++..
T Consensus       896 ~~~~~~~~~~  905 (1179)
T TIGR02168       896 LEELSEELRE  905 (1179)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.80  E-value=2.1  Score=51.86  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=20.8

Q ss_pred             HHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhh
Q 037169          656 QVSEGMKGKEEICSNVQRKVKELENKLKEHDQS  688 (860)
Q Consensus       656 ~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~  688 (860)
                      +|......++.+|..+.+++.+++++.....++
T Consensus       532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~e  564 (1118)
T KOG1029|consen  532 ELEAARRKKELIRQAIKDQLDELSKETESKLNE  564 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344445556677777777777777666554444

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.77  E-value=1.9  Score=42.81  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=11.0

Q ss_pred             HhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169          658 SEGMKGKEEICSNVQRKVKELENKLK  683 (860)
Q Consensus       658 ~~~~~~~ee~~~~lq~~~~ele~~l~  683 (860)
                      ..++...++.+......+.+...+|.
T Consensus        79 ~rriq~LEeele~ae~~L~e~~ekl~  104 (143)
T PF12718_consen   79 NRRIQLLEEELEEAEKKLKETTEKLR  104 (143)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.43  E-value=3.8  Score=48.83  Aligned_cols=29  Identities=24%  Similarity=0.329  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169          633 INELESQLESKTQLCRQLEKQLLQVSEGM  661 (860)
Q Consensus       633 ~~ele~~l~~~~~~~~~le~~l~~l~~~~  661 (860)
                      ...|..+.+...+.+.+|+..+..+..+.
T Consensus       208 ~~~L~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  208 RESLKEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444554444444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.43  E-value=4  Score=48.88  Aligned_cols=17  Identities=24%  Similarity=0.419  Sum_probs=13.4

Q ss_pred             EEEEeeccCCCCccccc
Q 037169          325 VCIFAYGQTGTGKTFTM  341 (860)
Q Consensus       325 ~~IfaYGqTGSGKTyTM  341 (860)
                      +..+-+|++|||||..+
T Consensus        28 g~~~i~G~NG~GKStll   44 (562)
T PHA02562         28 KKTLITGKNGAGKSTML   44 (562)
T ss_pred             CEEEEECCCCCCHHHHH
Confidence            45566899999999755

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.32  E-value=2.4  Score=57.20  Aligned_cols=18  Identities=39%  Similarity=0.706  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 037169          668 CSNVQRKVKELENKLKEH  685 (860)
Q Consensus       668 ~~~lq~~~~ele~~l~~~  685 (860)
                      ...++..+++++..+.++
T Consensus      1092 ~~~l~k~i~eL~~~i~el 1109 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKEL 1109 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333444444444444333

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.02  E-value=5.7  Score=41.68  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 037169          703 NRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYAT  738 (860)
Q Consensus       703 ~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~~  738 (860)
                      .-+.+..+......-.|+.++..+.+.+...+-|+.
T Consensus       132 ~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~  167 (201)
T PF13851_consen  132 SAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN  167 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444555666677777777766666663

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=93.93  E-value=3.6  Score=53.94  Aligned_cols=10  Identities=20%  Similarity=0.235  Sum_probs=6.4

Q ss_pred             cEEEEEEEee
Q 037169           97 PIVNGICIKN  106 (860)
Q Consensus        97 p~InaIEI~k  106 (860)
                      -+|||-.+..
T Consensus       112 Y~INg~~~~~  121 (1163)
T COG1196         112 YYINGEKVRL  121 (1163)
T ss_pred             EEECCcEeeH
Confidence            5777766643

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=93.91  E-value=0.073  Score=64.89  Aligned_cols=68  Identities=43%  Similarity=0.714  Sum_probs=51.6

Q ss_pred             eccchhhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccc
Q 037169          309 FADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDL  388 (860)
Q Consensus       309 f~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DL  388 (860)
                      |.+..+.+..++++++..        +|++|+|.+.....|+.-+....++.........       ..++.|++.+.|+
T Consensus        44 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  108 (670)
T KOG0239|consen   44 FSDVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKTS-------NVVEAYNERLRDL  108 (670)
T ss_pred             CCccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCCc-------hhHHHHHHHHhhh
Confidence            555677788888888876        8999999999988888888877777654433221       1678899999999


Q ss_pred             cCC
Q 037169          389 LDT  391 (860)
Q Consensus       389 L~~  391 (860)
                      +..
T Consensus       109 ~~~  111 (670)
T KOG0239|consen  109 LSE  111 (670)
T ss_pred             ccc
Confidence            864

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.78  E-value=7.2  Score=38.05  Aligned_cols=34  Identities=18%  Similarity=0.290  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169          704 RLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       704 kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      .-...+..++.+...+..++.+|..+.+-.-.|+
T Consensus        95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql  128 (132)
T PF07926_consen   95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL  128 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444555444444333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PHA02562 46 endonuclease subunit; Provisional

Probab=93.64  E-value=5.2  Score=47.86  Aligned_cols=14  Identities=14%  Similarity=0.264  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHHH
Q 037169          718 MLQQKIAELEEKLR  731 (860)
Q Consensus       718 ~lq~qi~eLe~kl~  731 (860)
                      .+..++.++..+..
T Consensus       383 ~l~~~l~~~~~~~~  396 (562)
T PHA02562        383 KLQDELDKIVKTKS  396 (562)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33334444433333

>PRK09039 hypothetical protein; Validated

Probab=93.52  E-value=6.3  Score=44.74  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          627 KNQQEKINELESQLESKTQLCRQLEKQL  654 (860)
Q Consensus       627 ~~~~~k~~ele~~l~~~~~~~~~le~~l  654 (860)
                      ..++..+.+++.++....+...+++..+
T Consensus        77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~  104 (343)
T PRK09039         77 QDLQDSVANLRASLSAAEAERSRLQALL  104 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555444444444444433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=93.46  E-value=11  Score=39.15  Aligned_cols=14  Identities=36%  Similarity=0.439  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHH
Q 037169          717 GMLQQKIAELEEKL  730 (860)
Q Consensus       717 ~~lq~qi~eLe~kl  730 (860)
                      ..++..+..|++.+
T Consensus       175 eeLR~e~s~LEeql  188 (193)
T PF14662_consen  175 EELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34555555555544

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.44  E-value=6  Score=44.32  Aligned_cols=35  Identities=23%  Similarity=0.412  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 037169          700 ELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKE  734 (860)
Q Consensus       700 ~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qe  734 (860)
                      +++..+.+.+...+..+..=..++..|.++++-.+
T Consensus       250 e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le  284 (312)
T smart00787      250 ELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ  284 (312)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            33333333333333333333344444554444333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=93.42  E-value=0.069  Score=62.28  Aligned_cols=74  Identities=24%  Similarity=0.234  Sum_probs=49.9

Q ss_pred             chhhHHHhhCCccEEEEeeccCCCCccccccCC---CCCCCch----hhHHHHHHHHHHHhcCCceEEEEEEEEEEeccc
Q 037169          312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT---QQNRGVN----YRTLELLFKIAEERKETFTYSISVSALEVYNEQ  384 (860)
Q Consensus       312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~---~~~~GIi----pRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~  384 (860)
                      +..||..+-.|...- .--|.|||||||||-.-   -.-|-++    --...+||...++.-+...+..+|||+.-|.-.
T Consensus        21 I~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFVSYYDYYQPE   99 (663)
T COG0556          21 IAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPE   99 (663)
T ss_pred             HHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHHHhCcCcceEEEeeeccccCcc
Confidence            456777766665543 35799999999999531   1112221    124567888888766666788899999999665


Q ss_pred             cc
Q 037169          385 IR  386 (860)
Q Consensus       385 i~  386 (860)
                      -|
T Consensus       100 AY  101 (663)
T COG0556         100 AY  101 (663)
T ss_pred             cc
Confidence            54

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.31  E-value=4.5  Score=45.43  Aligned_cols=7  Identities=14%  Similarity=0.344  Sum_probs=3.7

Q ss_pred             hcccccC
Q 037169          530 LLQDSLG  536 (860)
Q Consensus       530 LLqdsLg  536 (860)
                      |+++++.
T Consensus       105 Lf~EY~~  111 (325)
T PF08317_consen  105 LFREYYT  111 (325)
T ss_pred             HHHHHHc
Confidence            5555544

>PRK02224 chromosome segregation protein; Provisional

Probab=93.14  E-value=6.5  Score=49.91  Aligned_cols=12  Identities=17%  Similarity=0.055  Sum_probs=4.8

Q ss_pred             CCCcceEEEEEE
Q 037169           66 GANKPLQVVDVR   77 (860)
Q Consensus        66 G~~~a~~~~~~~   77 (860)
                      |...+.+.+.|.
T Consensus        64 ~~~~~~v~~~f~   75 (880)
T PRK02224         64 GAEEAEIELWFE   75 (880)
T ss_pred             CCCcEEEEEEEE
Confidence            333333334444

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.11  E-value=2.3  Score=51.60  Aligned_cols=15  Identities=20%  Similarity=-0.022  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHH
Q 037169          200 LEKQAAKLKDVASLY  214 (860)
Q Consensus       200 ~~~~~~~~~~~~~~~  214 (860)
                      +..|+=+|.++..|=
T Consensus        50 VLaqIWALsDldkDG   64 (1118)
T KOG1029|consen   50 VLAQIWALSDLDKDG   64 (1118)
T ss_pred             HHHHHHHhhhcCccc
Confidence            344444444444443

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=93.01  E-value=15  Score=39.47  Aligned_cols=126  Identities=15%  Similarity=0.248  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhh
Q 037169          607 KLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHD  686 (860)
Q Consensus       607 ~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~  686 (860)
                      .|+.++..++............+.-....+...++.   ...+.-++..++...+.+...+|++++..+.+||+.-..+.
T Consensus        49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~---q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLE  125 (333)
T KOG1853|consen   49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQED---QRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE  125 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            345555555555444433333332222222222221   22222334444555555566788888888888775443332


Q ss_pred             hhh-----hHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 037169          687 QSE-----NVTALHHKV-------RELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEY  736 (860)
Q Consensus       687 q~~-----~~~~le~ki-------~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq  736 (860)
                      ...     ..+.+++++       ..||..+-+....++ .++.|...-.+|.++|.-+.+|
T Consensus       126 rakRati~sleDfeqrLnqAIErnAfLESELdEke~lle-svqRLkdEardlrqelavr~kq  186 (333)
T KOG1853|consen  126 RAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLE-SVQRLKDEARDLRQELAVRTKQ  186 (333)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence            211     112223222       234444444333333 3566666667777777765555

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.00  E-value=5.6  Score=44.73  Aligned_cols=8  Identities=25%  Similarity=0.235  Sum_probs=3.2

Q ss_pred             HHHHHHHh
Q 037169          506 LGDVISSL  513 (860)
Q Consensus       506 Lg~vI~aL  513 (860)
                      |.+|+.|+
T Consensus        56 l~~~~~A~   63 (325)
T PF08317_consen   56 LEDYVVAG   63 (325)
T ss_pred             HHHHHHHh
Confidence            33444443

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=93.00  E-value=3.7  Score=47.25  Aligned_cols=12  Identities=17%  Similarity=0.171  Sum_probs=6.8

Q ss_pred             CceEEEEEEEEE
Q 037169          448 RSHCMLCISVKA  459 (860)
Q Consensus       448 RSH~If~i~v~~  459 (860)
                      -.|++|...|.-
T Consensus       147 ~Chll~V~~ve~  158 (493)
T KOG0804|consen  147 VCHLLYVDRVEV  158 (493)
T ss_pred             ceeEEEEEEEEE
Confidence            456666555543

>PRK03918 chromosome segregation protein; Provisional

Probab=92.99  E-value=9  Score=48.53  Aligned_cols=17  Identities=41%  Similarity=0.757  Sum_probs=13.3

Q ss_pred             CccEEEEeeccCCCCccccc
Q 037169          322 GYNVCIFAYGQTGTGKTFTM  341 (860)
Q Consensus       322 G~N~~IfaYGqTGSGKTyTM  341 (860)
                      |+|+   -+|++|||||..|
T Consensus        24 g~~~---i~G~nG~GKStil   40 (880)
T PRK03918         24 GINL---IIGQNGSGKSSIL   40 (880)
T ss_pred             CcEE---EEcCCCCCHHHHH
Confidence            5544   7899999999764

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=92.72  E-value=6.3  Score=49.98  Aligned_cols=20  Identities=35%  Similarity=0.625  Sum_probs=15.6

Q ss_pred             CccEEEEeeccCCCCcccccc
Q 037169          322 GYNVCIFAYGQTGTGKTFTME  342 (860)
Q Consensus       322 G~N~~IfaYGqTGSGKTyTM~  342 (860)
                      |-+.. |.-|+.||||+-.|.
T Consensus        61 g~~vN-fI~G~NGSGKSAIlt   80 (1074)
T KOG0250|consen   61 GPRVN-FIVGNNGSGKSAILT   80 (1074)
T ss_pred             CCCce-EeecCCCCcHHHHHH
Confidence            44444 889999999998874

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=92.64  E-value=5.2  Score=47.69  Aligned_cols=77  Identities=12%  Similarity=0.201  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037169          583 KLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSE  659 (860)
Q Consensus       583 ~~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~  659 (860)
                      ++.+++.+++.++..+.........-++++......+...+.........+..++..+..+.+...++..+|..+..
T Consensus       114 ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  114 EITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            44555555555555544433333333333333333333334444444555555666655555555555555554443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=92.60  E-value=15  Score=38.41  Aligned_cols=67  Identities=28%  Similarity=0.453  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 037169          668 CSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRL-------KARTQEFEVHSGMLQQKIAELEEKLRKKEEY  736 (860)
Q Consensus       668 ~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl-------~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq  736 (860)
                      .+.++.++..++.++.+....  +..|+++++-...-.       ..-..+.......++.++..|..++++.+++
T Consensus       120 ReeL~~kL~~~~~~l~~~~~k--i~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~  193 (194)
T PF15619_consen  120 REELQRKLSQLEQKLQEKEKK--IQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKERE  193 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            455666666666666543332  233444443222211       1111222334455666666666666666554

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=92.39  E-value=7  Score=47.47  Aligned_cols=23  Identities=39%  Similarity=0.573  Sum_probs=16.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHh
Q 037169          715 HSGMLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       715 ~~~~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      +.+.++++++++..+++..++.+
T Consensus       448 ~ik~~r~~~k~~~~e~~~Kee~~  470 (594)
T PF05667_consen  448 EIKELREEIKEIEEEIRQKEELY  470 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888888887666644

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=92.32  E-value=18  Score=41.98  Aligned_cols=8  Identities=25%  Similarity=0.081  Sum_probs=4.1

Q ss_pred             EEEecCCC
Q 037169          543 MFLQISPS  550 (860)
Q Consensus       543 mI~~VSP~  550 (860)
                      ++++++|+
T Consensus        25 ~~~~~s~s   32 (420)
T COG4942          25 AVLAAAFS   32 (420)
T ss_pred             cccccchh
Confidence            44555554

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=92.27  E-value=16  Score=37.97  Aligned_cols=21  Identities=19%  Similarity=0.085  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 037169          717 GMLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       717 ~~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      ..+..-..+|..+..+.++|+
T Consensus       168 eEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  168 EEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            345555556666666666665

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=92.21  E-value=27  Score=40.51  Aligned_cols=36  Identities=19%  Similarity=0.405  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh
Q 037169          584 LQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKA  619 (860)
Q Consensus       584 ~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~  619 (860)
                      +..++..++.+..++....+...+|+.++.+++..+
T Consensus        40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i   75 (420)
T COG4942          40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEI   75 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555544444444444444444444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=92.20  E-value=16  Score=44.40  Aligned_cols=14  Identities=36%  Similarity=0.506  Sum_probs=8.7

Q ss_pred             hhhHHHHHHHHHHH
Q 037169          141 MKSMAKCEKRIKEL  154 (860)
Q Consensus       141 ~~~~~~~~~~~~~~  154 (860)
                      .+.|++++..-.+|
T Consensus        28 ~~~i~~Le~~k~~l   41 (569)
T PRK04778         28 YKRIDELEERKQEL   41 (569)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55666666666555

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.13  E-value=9.3  Score=47.47  Aligned_cols=9  Identities=22%  Similarity=0.601  Sum_probs=4.7

Q ss_pred             ccCcccccc
Q 037169          808 WRGSENNIL  816 (860)
Q Consensus       808 ~~~~~~~~~  816 (860)
                      ..|+++.-+
T Consensus       611 rrGGdhDsv  619 (1243)
T KOG0971|consen  611 RRGGDHDSV  619 (1243)
T ss_pred             cCCCCccee
Confidence            355555544

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.10  E-value=8.1  Score=43.28  Aligned_cols=26  Identities=31%  Similarity=0.199  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccc
Q 037169          718 MLQQKIAELEEKLRKKEEYATAYCFRE  744 (860)
Q Consensus       718 ~lq~qi~eLe~kl~~Qeeq~~~~~~~~  744 (860)
                      .++.+|.+++..+. +-+.|+..++..
T Consensus       250 e~~~~I~~ae~~~~-~~r~~t~~Ei~~  275 (312)
T smart00787      250 ELNTEIAEAEKKLE-QCRGFTFKEIEK  275 (312)
T ss_pred             HHHHHHHHHHHHHH-hcCCCCHHHHHH
Confidence            34444444444332 334444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=91.99  E-value=0.084  Score=57.99  Aligned_cols=29  Identities=31%  Similarity=0.528  Sum_probs=27.1

Q ss_pred             hhhHHHhhCCccEEEEeeccCCCCccccc
Q 037169          313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTM  341 (860)
Q Consensus       313 ~plV~~~l~G~N~~IfaYGqTGSGKTyTM  341 (860)
                      -|++..+++--++.|+.-|+||||||.||
T Consensus       114 P~i~~~~~~~~~GLILVTGpTGSGKSTTl  142 (353)
T COG2805         114 PPIVRELAESPRGLILVTGPTGSGKSTTL  142 (353)
T ss_pred             CHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence            47888899999999999999999999998

>PRK03918 chromosome segregation protein; Provisional

Probab=91.82  E-value=15  Score=46.46  Aligned_cols=6  Identities=17%  Similarity=0.219  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 037169          423 EVWDVL  428 (860)
Q Consensus       423 e~~~ll  428 (860)
                      ++..++
T Consensus       112 ~~~~~i  117 (880)
T PRK03918        112 SVREWV  117 (880)
T ss_pred             HHHHHH
Confidence            333333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.47  E-value=54  Score=42.39  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=12.6

Q ss_pred             cChHHHHHHHHHHHHHHHHhcCh
Q 037169          579 IDISKLQKVKMMLEKTKQEVGSK  601 (860)
Q Consensus       579 ~~~~~~~~lk~~l~~~k~e~~~~  601 (860)
                      .+...+..++..++.++.++...
T Consensus       855 ~d~~~l~~~~~~ie~l~kE~e~~  877 (1293)
T KOG0996|consen  855 VDKKRLKELEEQIEELKKEVEEL  877 (1293)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556666666665443

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=91.47  E-value=0.36  Score=54.82  Aligned_cols=17  Identities=41%  Similarity=0.704  Sum_probs=14.8

Q ss_pred             EEEEeeccCCCCccccc
Q 037169          325 VCIFAYGQTGTGKTFTM  341 (860)
Q Consensus       325 ~~IfaYGqTGSGKTyTM  341 (860)
                      ..|+-||++|+|||++.
T Consensus       157 ~gvLL~GppGtGKT~la  173 (364)
T TIGR01242       157 KGVLLYGPPGTGKTLLA  173 (364)
T ss_pred             ceEEEECCCCCCHHHHH
Confidence            45888999999999876

Many proteins may score above the trusted cutoff because an internal

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=91.46  E-value=0.17  Score=59.15  Aligned_cols=31  Identities=29%  Similarity=0.322  Sum_probs=27.6

Q ss_pred             chhhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169          312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTME  342 (860)
Q Consensus       312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~  342 (860)
                      ....+..++..-++.|+.-||||||||.||+
T Consensus       246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY  276 (500)
T COG2804         246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLY  276 (500)
T ss_pred             HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence            4456788899999999999999999999996

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.40  E-value=13  Score=49.87  Aligned_cols=18  Identities=33%  Similarity=0.466  Sum_probs=15.0

Q ss_pred             EEEEeeccCCCCcccccc
Q 037169          325 VCIFAYGQTGTGKTFTME  342 (860)
Q Consensus       325 ~~IfaYGqTGSGKTyTM~  342 (860)
                      +++.-+|++|||||.+|-
T Consensus        28 ~~~~l~G~NGaGKSTll~   45 (1486)
T PRK04863         28 LVTTLSGGNGAGKSTTMA   45 (1486)
T ss_pred             CeEEEECCCCCCHHHHHH
Confidence            466678999999999884

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=91.40  E-value=11  Score=45.73  Aligned_cols=18  Identities=11%  Similarity=0.383  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHhcC
Q 037169          583 KLQKVKMMLEKTKQEVGS  600 (860)
Q Consensus       583 ~~~~lk~~l~~~k~e~~~  600 (860)
                      ++..++.++..+..++..
T Consensus       329 el~~l~~~l~~l~~~i~~  346 (594)
T PF05667_consen  329 ELEELQEQLDELESQIEE  346 (594)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=91.38  E-value=14  Score=47.14  Aligned_cols=20  Identities=20%  Similarity=0.298  Sum_probs=12.6

Q ss_pred             HhHhhhhHHHHHHHHHHhcc
Q 037169          496 AQNINRSLSALGDVISSLAT  515 (860)
Q Consensus       496 ~~~INkSL~aLg~vI~aL~~  515 (860)
                      +..|+.++..|.+|=.-|..
T Consensus      1517 ~~~I~e~v~sL~nVd~IL~~ 1536 (1758)
T KOG0994|consen 1517 TGEIQERVASLPNVDAILSR 1536 (1758)
T ss_pred             HHHHHHHHHhcccHHHHHHh
Confidence            45677777777766555543

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=91.37  E-value=21  Score=37.39  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 037169          695 HHKVRELENRLKARTQEFEVH  715 (860)
Q Consensus       695 e~ki~~lE~kl~~~~~~~e~~  715 (860)
                      ..++..|+.+++-....+...
T Consensus       138 ~~ki~~Lek~leL~~k~~~rq  158 (194)
T PF15619_consen  138 EKKIQELEKQLELENKSFRRQ  158 (194)
T ss_pred             HHHHHHHHHHHHHHhhHHHHH
Confidence            334444444444444444433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.31  E-value=14  Score=49.54  Aligned_cols=10  Identities=40%  Similarity=0.524  Sum_probs=6.1

Q ss_pred             cchhhccccc
Q 037169          526 KLTHLLQDSL  535 (860)
Q Consensus       526 KLT~LLqdsL  535 (860)
                      .+|+.|+++|
T Consensus       212 ~i~~fl~~yl  221 (1486)
T PRK04863        212 AITRSLRDYL  221 (1486)
T ss_pred             hHHHHHHHHc
Confidence            5566666665

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.30  E-value=21  Score=37.43  Aligned_cols=17  Identities=12%  Similarity=0.196  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHhc
Q 037169          583 KLQKVKMMLEKTKQEVG  599 (860)
Q Consensus       583 ~~~~lk~~l~~~k~e~~  599 (860)
                      -|..|+.++..++....
T Consensus        28 lIksLKeei~emkk~e~   44 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEE   44 (201)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45555555555554433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.28  E-value=16  Score=45.52  Aligned_cols=12  Identities=33%  Similarity=0.440  Sum_probs=6.5

Q ss_pred             CCCCCchhhHHH
Q 037169          345 QQNRGVNYRTLE  356 (860)
Q Consensus       345 ~~~~GIipRal~  356 (860)
                      +.+.||+-|.-+
T Consensus        61 d~ncG~FVr~sq   72 (1243)
T KOG0971|consen   61 DENCGVFVRSSQ   72 (1243)
T ss_pred             CCCcceEeehhh
Confidence            445566555544

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=91.14  E-value=21  Score=37.47  Aligned_cols=49  Identities=20%  Similarity=0.331  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q 037169          582 SKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQ  630 (860)
Q Consensus       582 ~~~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~  630 (860)
                      .+|--|+.++.....++..+...|-.|..++.+....+...+.....+.
T Consensus        10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~   58 (202)
T PF06818_consen   10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQ   58 (202)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            4566677777777777777776777777777666666655544444333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.97  E-value=12  Score=44.53  Aligned_cols=45  Identities=20%  Similarity=0.300  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhh
Q 037169          642 SKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHD  686 (860)
Q Consensus       642 ~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~  686 (860)
                      ......+.+++.+.++......+++.++.++.+..+|.+.+..+.
T Consensus       284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~  328 (581)
T KOG0995|consen  284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQG  328 (581)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            333444455566777777777778888888888888887776553

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=90.95  E-value=9.7  Score=42.14  Aligned_cols=29  Identities=21%  Similarity=0.357  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          630 QEKINELESQLESKTQLCRQLEKQLLQVS  658 (860)
Q Consensus       630 ~~k~~ele~~l~~~~~~~~~le~~l~~l~  658 (860)
                      +..+.++..++.........++.++..+.
T Consensus        53 e~el~~lr~~id~~~~eka~l~~e~~~l~   81 (312)
T PF00038_consen   53 EEELRELRRQIDDLSKEKARLELEIDNLK   81 (312)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence            44444455555544444444444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK06835 DNA replication protein DnaC; Validated

Probab=90.85  E-value=0.46  Score=53.43  Aligned_cols=41  Identities=20%  Similarity=0.396  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169          146 KCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGL  186 (860)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  186 (860)
                      .|++....-......-.+|.+.....+.++..++..+...+
T Consensus        12 ~y~~~r~~~~~~~~~r~~e~~~~~P~~~~id~~i~~~~~~~   52 (329)
T PRK06835         12 EYEKRRDKEELELKNRKEEVYKKIPEIAEIDDEIAKLGIKL   52 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence            36666666666666666677777777777777766665544

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=90.79  E-value=24  Score=40.11  Aligned_cols=14  Identities=29%  Similarity=0.325  Sum_probs=11.5

Q ss_pred             hHHHHHHHHHHhcc
Q 037169          502 SLSALGDVISSLAT  515 (860)
Q Consensus       502 SL~aLg~vI~aL~~  515 (860)
                      +...||.||..+.+
T Consensus         8 ~vlvLgGVIA~~gD   21 (499)
T COG4372           8 FVLVLGGVIAYAGD   21 (499)
T ss_pred             HHHHHHhHHHHHhh
Confidence            56789999998875

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=90.32  E-value=1  Score=51.86  Aligned_cols=18  Identities=39%  Similarity=0.648  Sum_probs=14.9

Q ss_pred             cEEEEeeccCCCCccccc
Q 037169          324 NVCIFAYGQTGTGKTFTM  341 (860)
Q Consensus       324 N~~IfaYGqTGSGKTyTM  341 (860)
                      ...|+-||++|+|||+..
T Consensus       165 p~gvLL~GppGtGKT~lA  182 (389)
T PRK03992        165 PKGVLLYGPPGTGKTLLA  182 (389)
T ss_pred             CCceEEECCCCCChHHHH
Confidence            345888999999999865

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.27  E-value=25  Score=38.41  Aligned_cols=61  Identities=18%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q 037169          584 LQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKT  644 (860)
Q Consensus       584 ~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~  644 (860)
                      +..+......+..++..++..+..+..+..++..+.....+..+.++.+|.++++.+..+.
T Consensus        40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~  100 (265)
T COG3883          40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ  100 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444445555555555555555555555555555555555555555555554433

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=90.24  E-value=39  Score=38.61  Aligned_cols=28  Identities=25%  Similarity=0.302  Sum_probs=17.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 037169          715 HSGMLQQKIAELEEKLRKKEEYATAYCF  742 (860)
Q Consensus       715 ~~~~lq~qi~eLe~kl~~Qeeq~~~~~~  742 (860)
                      ....++.++..++.++...+.++....+
T Consensus       247 ~l~~~~~~l~~~~~~l~~~~~~l~~~~i  274 (423)
T TIGR01843       247 ELTEAQARLAELRERLNKARDRLQRLII  274 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcEE
Confidence            4455666777777777766666644333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=89.90  E-value=32  Score=42.15  Aligned_cols=13  Identities=31%  Similarity=0.570  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHH
Q 037169          604 VIQKLEENFQNLE  616 (860)
Q Consensus       604 ~i~~le~~~~~l~  616 (860)
                      .+..|+..+..|+
T Consensus        51 ~V~eLE~sL~eLk   63 (617)
T PF15070_consen   51 RVQELERSLSELK   63 (617)
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=89.84  E-value=16  Score=36.22  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=8.2

Q ss_pred             HHHHHhhHHHHHHHHHHHHHH
Q 037169          710 QEFEVHSGMLQQKIAELEEKL  730 (860)
Q Consensus       710 ~~~e~~~~~lq~qi~eLe~kl  730 (860)
                      ..++.+...-..++.-|+++|
T Consensus       129 tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen  129 TQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            333333333344444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.78  E-value=32  Score=43.63  Aligned_cols=27  Identities=19%  Similarity=0.158  Sum_probs=15.1

Q ss_pred             eeEEEeCChHHHHHHHhhhhhcCcccc
Q 037169          413 LTEAKIENIKEVWDVLHIGSNARAVGS  439 (860)
Q Consensus       413 l~e~~V~s~~e~~~ll~~g~~~R~~~s  439 (860)
                      |-.+.|.+..-.-.+|+.|.-.|++.-
T Consensus       548 LynvVv~te~tgkqLLq~g~l~rRvTi  574 (1174)
T KOG0933|consen  548 LYNVVVDTEDTGKQLLQRGNLRRRVTI  574 (1174)
T ss_pred             ceeEEeechHHHHHHhhcccccceeEE
Confidence            344555555556666666666655443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.70  E-value=2.1  Score=44.41  Aligned_cols=101  Identities=19%  Similarity=0.154  Sum_probs=38.5

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          141 MKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRL  220 (860)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (860)
                      +.+++.+-+..+++..++-.+..+..++...+......|..+..++..+..+...++..++.....+..+...+..+.  
T Consensus        80 ~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~--  157 (194)
T PF08614_consen   80 QEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ--  157 (194)
T ss_dssp             ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             cccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            455555555555555555555555555555555555666666666655555555555555555555555555553333  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          221 WIIAMNELERKILIWKEEHSQLARE  245 (860)
Q Consensus       221 ~~~~~~~~~~~~~~~~~e~~~l~~e  245 (860)
                        -....++.++..++.|...|...
T Consensus       158 --l~~~~~e~k~~~l~~En~~Lv~R  180 (194)
T PF08614_consen  158 --LQLNMLEEKLRKLEEENRELVER  180 (194)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHH
Confidence              34455666666666666666543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=89.62  E-value=43  Score=38.25  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q 037169          717 GMLQQKIAELEEKLRKKEEYATA  739 (860)
Q Consensus       717 ~~lq~qi~eLe~kl~~Qeeq~~~  739 (860)
                      +...+++...++.++++++++..
T Consensus       241 ~q~~q~iaar~e~I~~re~~lq~  263 (499)
T COG4372         241 SQKAQQIAARAEQIRERERQLQR  263 (499)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHH
Confidence            34445566667777788888844

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=89.52  E-value=18  Score=43.95  Aligned_cols=58  Identities=21%  Similarity=0.243  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169          626 CKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK  683 (860)
Q Consensus       626 ~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~  683 (860)
                      +..++..+.++..+++...+....+...+..+........+.+..++.++..+...+.
T Consensus       378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~  435 (569)
T PRK04778        378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLE  435 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555555544444444444445555544444333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=89.42  E-value=40  Score=42.80  Aligned_cols=19  Identities=21%  Similarity=0.219  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 037169          722 KIAELEEKLRKKEEYATAY  740 (860)
Q Consensus       722 qi~eLe~kl~~Qeeq~~~~  740 (860)
                      -+.+++..-.++++.+|+-
T Consensus       569 ~~n~lE~~~~elkk~idaL  587 (1195)
T KOG4643|consen  569 NNNDLELIHNELKKYIDAL  587 (1195)
T ss_pred             hhhHHHHHHHHHHHHHHHH
Confidence            3333333334444444443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=89.41  E-value=28  Score=46.05  Aligned_cols=80  Identities=15%  Similarity=0.156  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          164 ECYEAWMSLTAANDQLEKVRMGLDNKCFQ----NLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEH  239 (860)
Q Consensus       164 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (860)
                      .+.+....+.++..+|..+...+......    ...+.........++..+...++.....+...+..+...+...+.+.
T Consensus       250 ~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L  329 (1201)
T PF12128_consen  250 KLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSEL  329 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444555555555444444332221    11222333333344444555555555555555555555555555444


Q ss_pred             HHHH
Q 037169          240 SQLA  243 (860)
Q Consensus       240 ~~l~  243 (860)
                      ..+.
T Consensus       330 ~~i~  333 (1201)
T PF12128_consen  330 DEIE  333 (1201)
T ss_pred             HHHH
Confidence            4443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=89.30  E-value=22  Score=46.95  Aligned_cols=12  Identities=17%  Similarity=0.324  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHh
Q 037169          726 LEEKLRKKEEYA  737 (860)
Q Consensus       726 Le~kl~~Qeeq~  737 (860)
                      +++++...++.+
T Consensus       776 l~~~i~~L~~~l  787 (1201)
T PF12128_consen  776 LKQEIEQLEKEL  787 (1201)
T ss_pred             HHHHHHHHHHHH
Confidence            333343344333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.30  E-value=10  Score=47.21  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 037169          717 GMLQQKIAELEEKLRKKEEYAT  738 (860)
Q Consensus       717 ~~lq~qi~eLe~kl~~Qeeq~~  738 (860)
                      ..++..+.++..++..|+.++.
T Consensus       649 ~~l~~si~~lk~k~~~Q~~~i~  670 (717)
T PF10168_consen  649 QDLKASIEQLKKKLDYQQRQIE  670 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            4456677777777777776654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=89.28  E-value=25  Score=34.98  Aligned_cols=55  Identities=18%  Similarity=0.221  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169          629 QQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK  683 (860)
Q Consensus       629 ~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~  683 (860)
                      .+.....+..+.+...+.+..++.++..+...+...+..+..+..+...+.+.+.
T Consensus        36 ~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq   90 (140)
T PF10473_consen   36 SQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ   90 (140)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444555555555555555555555555555555544444444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=89.26  E-value=6.3  Score=47.04  Aligned_cols=22  Identities=9%  Similarity=0.018  Sum_probs=14.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q 037169          716 SGMLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       716 ~~~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      +..|++++.+.+.+..++.+++
T Consensus       240 ~a~L~Eq~~eK~~e~~rl~~~l  261 (861)
T KOG1899|consen  240 MAPLREQRSEKNDEEMRLLRTL  261 (861)
T ss_pred             hhhHHHHHhhhhhHHHHHHHHH
Confidence            4567777777776666666666

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=88.90  E-value=43  Score=41.97  Aligned_cols=15  Identities=20%  Similarity=0.038  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHhhhh
Q 037169          147 CEKRIKELKIQCQLK  161 (860)
Q Consensus       147 ~~~~~~~~~~~~~~~  161 (860)
                      +++.+.++..-....
T Consensus        84 ~r~~i~~l~r~w~~l   98 (980)
T KOG0980|consen   84 YKKWITQLGRMWGHL   98 (980)
T ss_pred             HHHHHHHHHHHhccc
Confidence            344444444333333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=88.79  E-value=17  Score=43.49  Aligned_cols=15  Identities=47%  Similarity=0.787  Sum_probs=9.6

Q ss_pred             CCcchh---hcccccCCC
Q 037169          524 NSKLTH---LLQDSLGGD  538 (860)
Q Consensus       524 dSKLT~---LLqdsLgGn  538 (860)
                      |++|+.   +|++.+|+.
T Consensus        65 N~~L~~di~~lr~~~~~~   82 (546)
T KOG0977|consen   65 NRKLEHDINLLRGVVGRE   82 (546)
T ss_pred             HHHHHHHHHHHHhhccCC
Confidence            456663   667777765

>TIGR00606 rad50 rad50

Probab=88.65  E-value=13  Score=49.43  Aligned_cols=23  Identities=9%  Similarity=0.185  Sum_probs=11.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHh
Q 037169          715 HSGMLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       715 ~~~~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      ....|+.++.++.+++..++..+
T Consensus       882 ~r~~le~~L~el~~el~~l~~~~  904 (1311)
T TIGR00606       882 RRQQFEEQLVELSTEVQSLIREI  904 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555554444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=88.45  E-value=26  Score=46.76  Aligned_cols=37  Identities=16%  Similarity=0.199  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 037169          694 LHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKL  730 (860)
Q Consensus       694 le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl  730 (860)
                      +...+..++..........+...+.++.++..+...+
T Consensus       914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  950 (1311)
T TIGR00606       914 LETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV  950 (1311)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444443333333333334444444433333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=88.30  E-value=1.2  Score=51.47  Aligned_cols=18  Identities=39%  Similarity=0.636  Sum_probs=15.2

Q ss_pred             cEEEEeeccCCCCccccc
Q 037169          324 NVCIFAYGQTGTGKTFTM  341 (860)
Q Consensus       324 N~~IfaYGqTGSGKTyTM  341 (860)
                      ...|+-||++|+|||+..
T Consensus       179 pkgvLL~GppGTGKT~LA  196 (398)
T PTZ00454        179 PRGVLLYGPPGTGKTMLA  196 (398)
T ss_pred             CceEEEECCCCCCHHHHH
Confidence            456888999999999876

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=88.29  E-value=46  Score=39.64  Aligned_cols=94  Identities=16%  Similarity=0.309  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 037169          646 LCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAE  725 (860)
Q Consensus       646 ~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~e  725 (860)
                      .+.+|-.+++....+.......|..++.++...++.......+  +......+..++..+.-++.-||.....+-+.+-.
T Consensus       421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~ee--L~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLas  498 (518)
T PF10212_consen  421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEE--LKEANQNISRLQDELETTRRNYEEQLSMMSEHLAS  498 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3444444555555555566677888887777776655443222  34466778888888998999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhc
Q 037169          726 LEEKLRKKEEYATAYC  741 (860)
Q Consensus       726 Le~kl~~Qeeq~~~~~  741 (860)
                      +.++|..|+++++.-.
T Consensus       499 mNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  499 MNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987654

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.25  E-value=18  Score=35.86  Aligned_cols=75  Identities=16%  Similarity=0.114  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          145 AKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKR  219 (860)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (860)
                      ++-....+.|..++..+..+...+...++.+..+++.+.+++.....+...+...+......++..+.++...+.
T Consensus        48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~  122 (151)
T PF11559_consen   48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN  122 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555566666666655554444444444444444444444444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=88.06  E-value=24  Score=44.59  Aligned_cols=50  Identities=20%  Similarity=0.249  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHh
Q 037169          636 LESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEH  685 (860)
Q Consensus       636 le~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~  685 (860)
                      .+.++......+..|+.++..+.......+......+.+++.+..++...
T Consensus       834 ~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~  883 (1174)
T KOG0933|consen  834 LKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDI  883 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhh
Confidence            33334444444444444444444444555555555555555555555433

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=87.83  E-value=29  Score=43.57  Aligned_cols=54  Identities=20%  Similarity=0.291  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          164 ECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKR  219 (860)
Q Consensus       164 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (860)
                      +...+...| .++.++.++..++.........+.. ++.....+..+...++....
T Consensus        75 ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~  128 (775)
T PF10174_consen   75 EIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQR  128 (775)
T ss_pred             HHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHH
Confidence            333333334 3344444444444333333333333 44444455555555544443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=87.58  E-value=54  Score=40.66  Aligned_cols=47  Identities=15%  Similarity=0.046  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169          202 KQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHE  248 (860)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~~  248 (860)
                      .|+..|..--..++..++.+++.+..+|..+++.+.|+..+..++|.
T Consensus       106 sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~  152 (1265)
T KOG0976|consen  106 SQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHK  152 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34444444444556666777777777777777777666655555443

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=87.44  E-value=0.66  Score=52.97  Aligned_cols=54  Identities=30%  Similarity=0.501  Sum_probs=35.1

Q ss_pred             chhhHHHhhCCccEE-EEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEE
Q 037169          312 ASPLVTSVLDGYNVC-IFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEV  380 (860)
Q Consensus       312 v~plV~~~l~G~N~~-IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEI  380 (860)
                      +..++..++.|.-.. ++.||.||||||.|+              ..+++.+........ .++|-+.+.
T Consensus        29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~--------------~~v~~~l~~~~~~~~-~~yINc~~~   83 (366)
T COG1474          29 LASFLAPALRGERPSNIIIYGPTGTGKTATV--------------KFVMEELEESSANVE-VVYINCLEL   83 (366)
T ss_pred             HHHHHHHHhcCCCCccEEEECCCCCCHhHHH--------------HHHHHHHHhhhccCc-eEEEeeeeC
Confidence            334455666655444 999999999999986              566666665544322 455655554

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=86.98  E-value=61  Score=40.72  Aligned_cols=6  Identities=17%  Similarity=0.324  Sum_probs=2.3

Q ss_pred             HHHHHH
Q 037169          586 KVKMML  591 (860)
Q Consensus       586 ~lk~~l  591 (860)
                      +|+.++
T Consensus       390 qLr~el  395 (980)
T KOG0980|consen  390 QLRNEL  395 (980)
T ss_pred             HHHHHH
Confidence            333333

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=86.60  E-value=34  Score=34.88  Aligned_cols=11  Identities=36%  Similarity=0.438  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHH
Q 037169          718 MLQQKIAELEE  728 (860)
Q Consensus       718 ~lq~qi~eLe~  728 (860)
                      .|+.+...++.
T Consensus       163 ~l~rk~~~l~~  173 (177)
T PF13870_consen  163 ELERKVEILEM  173 (177)
T ss_pred             HHHHHHHHHHH
Confidence            34444444433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=86.57  E-value=63  Score=40.25  Aligned_cols=20  Identities=15%  Similarity=0.262  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 037169          694 LHHKVRELENRLKARTQEFE  713 (860)
Q Consensus       694 le~ki~~lE~kl~~~~~~~e  713 (860)
                      |..+++++..-.......++
T Consensus       140 l~~qlee~~rLk~iae~qle  159 (717)
T PF09730_consen  140 LNSQLEEAARLKEIAEKQLE  159 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444333333333333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=86.25  E-value=76  Score=37.20  Aligned_cols=9  Identities=33%  Similarity=0.490  Sum_probs=3.6

Q ss_pred             hHHHHHHHH
Q 037169          556 ETLSSLNFA  564 (860)
Q Consensus       556 ETl~TL~fA  564 (860)
                      |+|..|+-.
T Consensus       317 EvL~kLk~t  325 (527)
T PF15066_consen  317 EVLQKLKHT  325 (527)
T ss_pred             HHHHHHHhh
Confidence            444444333

>PLN02939 transferase, transferring glycosyl groups

Probab=86.04  E-value=37  Score=43.49  Aligned_cols=69  Identities=32%  Similarity=0.457  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 037169          666 EICSNVQRKVKELENKLKEHD----QSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKE  734 (860)
Q Consensus       666 e~~~~lq~~~~ele~~l~~~~----q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qe  734 (860)
                      +...+++.++..||.-|.+..    ..+.++.++++++.+|.+++....++....+..++.+.+.+..+....
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (977)
T PLN02939        324 DQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLK  396 (977)
T ss_pred             ccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567788888877766543    345666788999999999988888888777777888888777777544

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=85.83  E-value=50  Score=34.75  Aligned_cols=9  Identities=44%  Similarity=0.733  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 037169          726 LEEKLRKKE  734 (860)
Q Consensus       726 Le~kl~~Qe  734 (860)
                      ++++..+.+
T Consensus       170 ~e~ki~~~e  178 (221)
T PF04012_consen  170 MEEKIEEME  178 (221)
T ss_pred             HHHHHHHHH
Confidence            333333333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=85.83  E-value=59  Score=36.11  Aligned_cols=12  Identities=33%  Similarity=0.670  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHH
Q 037169          671 VQRKVKELENKL  682 (860)
Q Consensus       671 lq~~~~ele~~l  682 (860)
                      +...+.+|+..+
T Consensus       112 ler~i~~Le~~~  123 (294)
T COG1340         112 LEREIERLEKKQ  123 (294)
T ss_pred             HHHHHHHHHHHH
Confidence            344444444333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=85.80  E-value=43  Score=41.43  Aligned_cols=9  Identities=33%  Similarity=0.527  Sum_probs=4.9

Q ss_pred             eeEEEeecC
Q 037169          470 SKLWLVDLA  478 (860)
Q Consensus       470 skL~lVDLA  478 (860)
                      |-..++||-
T Consensus        24 sp~qvidln   32 (1265)
T KOG0976|consen   24 SPFQVIDLN   32 (1265)
T ss_pred             CCceeeecc
Confidence            445566663

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=85.48  E-value=42  Score=34.42  Aligned_cols=7  Identities=57%  Similarity=0.857  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 037169          719 LQQKIAE  725 (860)
Q Consensus       719 lq~qi~e  725 (860)
                      +.+++.+
T Consensus       177 l~~~~~~  183 (191)
T PF04156_consen  177 LEEKIQE  183 (191)
T ss_pred             HHHHHHH
Confidence            3333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=85.44  E-value=80  Score=38.84  Aligned_cols=13  Identities=15%  Similarity=0.345  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHh
Q 037169          586 KVKMMLEKTKQEV  598 (860)
Q Consensus       586 ~lk~~l~~~k~e~  598 (860)
                      .|...++.++.++
T Consensus        84 ~Lq~E~~~L~kEl   96 (617)
T PF15070_consen   84 QLQAEAEHLRKEL   96 (617)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444443

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=84.99  E-value=27  Score=39.05  Aligned_cols=49  Identities=22%  Similarity=0.221  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 037169          631 EKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELE  679 (860)
Q Consensus       631 ~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele  679 (860)
                      .+...||..+...+++..+++-+|+.+...-.++++....+.+++.+.-
T Consensus       127 ~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~l  175 (401)
T PF06785_consen  127 GDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEAL  175 (401)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence            3445566666666666667777776666555556666655655555443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=84.90  E-value=14  Score=41.47  Aligned_cols=24  Identities=21%  Similarity=0.443  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhcChHHHHHHH
Q 037169          585 QKVKMMLEKTKQEVGSKDDVIQKL  608 (860)
Q Consensus       585 ~~lk~~l~~~k~e~~~~~~~i~~l  608 (860)
                      ..++..++.+..+.+.+...+..+
T Consensus        12 ~~l~~~~~~~~~E~~~Y~~fL~~l   35 (314)
T PF04111_consen   12 EQLDKQLEQAEKERDTYQEFLKKL   35 (314)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555554444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=84.83  E-value=77  Score=39.92  Aligned_cols=32  Identities=25%  Similarity=0.450  Sum_probs=15.3

Q ss_pred             HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHh
Q 037169          654 LLQVSEGMKGKEEICSNVQRKVKELENKLKEH  685 (860)
Q Consensus       654 l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~  685 (860)
                      +..+.+.+.-.+..+..++.++..|+..+.+.
T Consensus       380 i~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek  411 (775)
T PF10174_consen  380 IEDLRDMLDKKERKINVLQKKIENLEEQLREK  411 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444555555555555555443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=84.83  E-value=51  Score=34.00  Aligned_cols=99  Identities=30%  Similarity=0.365  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 037169          633 INELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEF  712 (860)
Q Consensus       633 ~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~  712 (860)
                      ..++..++......+.-||++|+..+..+...+..-....++-..++..- ...+. .+..-..+++.||...-.++.  
T Consensus        59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~-~~~~~-~~~~klekLe~LE~E~~rLt~--  134 (178)
T PF14073_consen   59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRER-QQDQS-ELQAKLEKLEKLEKEYLRLTA--  134 (178)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-ccchh-hHHHHHHHHHHHHHHHHHHHH--
Confidence            55777888888888888888888777666555543333333323332211 01111 111222344444444333322  


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169          713 EVHSGMLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       713 e~~~~~lq~qi~eLe~kl~~Qeeq~  737 (860)
                        ....-+.+|.+||++|.+.+.|.
T Consensus       135 --~Q~~ae~Ki~~LE~KL~eEehqR  157 (178)
T PF14073_consen  135 --TQSLAETKIKELEEKLQEEEHQR  157 (178)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHH
Confidence              12344668888888888666554

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=84.79  E-value=8.1  Score=34.10  Aligned_cols=64  Identities=30%  Similarity=0.335  Sum_probs=41.3

Q ss_pred             HhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037169          597 EVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEG  660 (860)
Q Consensus       597 e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~  660 (860)
                      .+..+++.|..|.++-..|...-......++.+..++.+++..+......+...+..+..+...
T Consensus         6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~   69 (74)
T PF12329_consen    6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER   69 (74)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677787777777777665555556666777777777776666666665555555554443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=84.77  E-value=84  Score=36.89  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=39.9

Q ss_pred             HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 037169          654 LLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSEN--------VTALHHKVRELENRLKARTQEFEVHSGMLQQKIAE  725 (860)
Q Consensus       654 l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~--------~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~e  725 (860)
                      +.++......+|+.++.|+.+..+|.+.+..+.-+..        .+.|.+.+.++.-+..++........-..|..++.
T Consensus       332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~s  411 (622)
T COG5185         332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKS  411 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Confidence            3444444444556666666666666665554432211        11233334444444555555444444445666666


Q ss_pred             HHHHHHHH
Q 037169          726 LEEKLRKK  733 (860)
Q Consensus       726 Le~kl~~Q  733 (860)
                      |++.++.-
T Consensus       412 lek~~~~~  419 (622)
T COG5185         412 LEKTLRQY  419 (622)
T ss_pred             HHHHHHHH
Confidence            77666643

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=84.76  E-value=41  Score=42.60  Aligned_cols=21  Identities=38%  Similarity=0.452  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 037169          717 GMLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       717 ~~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      ..++..+..+++.+..+++++
T Consensus       477 ~~l~~~i~~~~~dl~~~~~~L  497 (1200)
T KOG0964|consen  477 KKLRSLIANLEEDLSRAEKNL  497 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666666666666

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=84.73  E-value=32  Score=42.92  Aligned_cols=20  Identities=10%  Similarity=0.243  Sum_probs=10.6

Q ss_pred             ecCeeEEEeCChHHHHHHHh
Q 037169          410 VPGLTEAKIENIKEVWDVLH  429 (860)
Q Consensus       410 v~gl~e~~V~s~~e~~~ll~  429 (860)
                      -.|+..+.+.=...+..++.
T Consensus       386 ~~GvH~V~L~wl~~L~~fl~  405 (717)
T PF10168_consen  386 NAGVHSVTLPWLSALQEFLE  405 (717)
T ss_pred             cCccEEEEeccHHHHHHHhc
Confidence            45666666654444444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=84.58  E-value=55  Score=34.19  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=9.2

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 037169          716 SGMLQQKIAELEEKLRKKE  734 (860)
Q Consensus       716 ~~~lq~qi~eLe~kl~~Qe  734 (860)
                      .+.|+..+.+++.++....
T Consensus       167 VakLeke~DdlE~kl~~~k  185 (205)
T KOG1003|consen  167 VAKLEKERDDLEEKLEEAK  185 (205)
T ss_pred             HHHHcccHHHHHHhhHHHH
Confidence            3444555555555554433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=84.44  E-value=1.1e+02  Score=37.31  Aligned_cols=29  Identities=21%  Similarity=0.346  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccCC
Q 037169          718 MLQQKIAELEEKLRKKEEYATAYCFREMP  746 (860)
Q Consensus       718 ~lq~qi~eLe~kl~~Qeeq~~~~~~~~~~  746 (860)
                      ..++++..++.++..-++.+...-+|.+|
T Consensus       411 ~Ar~~l~~~~~~l~~ikR~lek~nLPGlp  439 (560)
T PF06160_consen  411 EAREKLQKLKQKLREIKRRLEKSNLPGLP  439 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            45667777888888888888888888776

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK06893 DNA replication initiation factor; Validated

Probab=84.42  E-value=0.56  Score=49.76  Aligned_cols=26  Identities=15%  Similarity=0.405  Sum_probs=20.9

Q ss_pred             HHhhCCccEEEEeeccCCCCcccccc
Q 037169          317 TSVLDGYNVCIFAYGQTGTGKTFTME  342 (860)
Q Consensus       317 ~~~l~G~N~~IfaYGqTGSGKTyTM~  342 (860)
                      ..+-.++|..++-||++|+||||.+.
T Consensus        32 ~~~~~~~~~~l~l~G~~G~GKThL~~   57 (229)
T PRK06893         32 KNFIDLQQPFFYIWGGKSSGKSHLLK   57 (229)
T ss_pred             HHhhccCCCeEEEECCCCCCHHHHHH
Confidence            33345788889999999999999774

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=84.16  E-value=33  Score=33.21  Aligned_cols=16  Identities=19%  Similarity=0.362  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q 037169          698 VRELENRLKARTQEFE  713 (860)
Q Consensus       698 i~~lE~kl~~~~~~~e  713 (860)
                      +++|+.++...+.+|.
T Consensus        98 veEL~~Dv~DlK~myr  113 (120)
T PF12325_consen   98 VEELRADVQDLKEMYR  113 (120)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3445555555555544

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=84.16  E-value=40  Score=32.66  Aligned_cols=34  Identities=18%  Similarity=0.349  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 037169          583 KLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLE  616 (860)
Q Consensus       583 ~~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~  616 (860)
                      -+.++...|..+..++......+..++.+...+.
T Consensus        17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~   50 (120)
T PF12325_consen   17 LVERLQSQLRRLEGELASLQEELARLEAERDELR   50 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555554444444444444443333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=84.07  E-value=77  Score=35.46  Aligned_cols=67  Identities=25%  Similarity=0.371  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 037169          668 CSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYATA  739 (860)
Q Consensus       668 ~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~~~  739 (860)
                      ...|+.++..++......  ....+.|....-.+|+.++.   +.+.....|..++..|+.+-+..+..++.
T Consensus       137 V~kL~k~i~~Le~e~~~~--q~~le~Lr~EKVdlEn~LE~---EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~  203 (310)
T PF09755_consen  137 VNKLQKKIERLEKEKSAK--QEELERLRREKVDLENTLEQ---EQEALVNRLWKQMDKLEAEKRRLQEKLEQ  203 (310)
T ss_pred             HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            344555555554433221  11122333333345554432   33334466777777777777777777744

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=83.80  E-value=45  Score=32.51  Aligned_cols=11  Identities=18%  Similarity=0.413  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q 037169          587 VKMMLEKTKQE  597 (860)
Q Consensus       587 lk~~l~~~k~e  597 (860)
                      +...+..+...
T Consensus         8 l~~e~~~~~~~   18 (132)
T PF07926_consen    8 LQSELQRLKEQ   18 (132)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=83.67  E-value=36  Score=40.43  Aligned_cols=98  Identities=16%  Similarity=0.154  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          145 AKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIA  224 (860)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (860)
                      .-|.++|++|..+.+.+..+..-.+..-+.+...|+....++..+.+......+.+..--++|.+.+.-|+..-..+.+-
T Consensus       416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEH  495 (518)
T PF10212_consen  416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEH  495 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            45788888887777777754444444444444444444444433333334445555555555666666665555555555


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 037169          225 MNELERKILIWKEEHSQL  242 (860)
Q Consensus       225 ~~~~~~~~~~~~~e~~~l  242 (860)
                      +..+.+++...+.|+..|
T Consensus       496 LasmNeqL~~Q~eeI~~L  513 (518)
T PF10212_consen  496 LASMNEQLAKQREEIQTL  513 (518)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555555555555444

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=83.64  E-value=20  Score=32.19  Aligned_cols=49  Identities=24%  Similarity=0.386  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 037169          674 KVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIA  724 (860)
Q Consensus       674 ~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~  724 (860)
                      .-.+++.++..+.++  +..+++++-+||....++++.||.+...|..++.
T Consensus        26 ~~~e~e~ki~~Qi~E--m~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe   74 (79)
T PF08581_consen   26 QKDEYEHKINSQIQE--MQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE   74 (79)
T ss_dssp             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555544443  4457888889999999999988877777666553

; PDB: 3VP9_B 3VP8_B.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=83.50  E-value=43  Score=42.50  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhc
Q 037169          587 VKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKG  621 (860)
Q Consensus       587 lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~  621 (860)
                      ++..+..+++++..+-+....+++++++++..+..
T Consensus       182 le~kir~LrqElEEK~enll~lr~eLddleae~~k  216 (1195)
T KOG4643|consen  182 LEKKIRTLRQELEEKFENLLRLRNELDDLEAEISK  216 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444455555555555544433

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=83.15  E-value=72  Score=40.95  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=16.5

Q ss_pred             HHHHHHHHhcc----CCCccc---CCCCcchhhcc
Q 037169          505 ALGDVISSLAT----KSGHIP---YRNSKLTHLLQ  532 (860)
Q Consensus       505 aLg~vI~aL~~----~~~hVP---YRdSKLT~LLq  532 (860)
                      +-.+||.-|..    ..+++|   -|..+++.=|+
T Consensus       541 ta~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr  575 (1141)
T KOG0018|consen  541 TARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLR  575 (1141)
T ss_pred             HHHHHHHHHHHhccCCccccchhhhhcCccccccc
Confidence            44567777764    245666   35566666665

>PRK01156 chromosome segregation protein; Provisional

Probab=83.06  E-value=78  Score=40.49  Aligned_cols=16  Identities=25%  Similarity=0.412  Sum_probs=13.3

Q ss_pred             EEEeeccCCCCccccc
Q 037169          326 CIFAYGQTGTGKTFTM  341 (860)
Q Consensus       326 ~IfaYGqTGSGKTyTM  341 (860)
                      +.+-+|++|||||..+
T Consensus        25 i~~I~G~NGsGKSsil   40 (895)
T PRK01156         25 INIITGKNGAGKSSIV   40 (895)
T ss_pred             eEEEECCCCCCHHHHH
Confidence            5567999999999764

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=83.06  E-value=64  Score=36.08  Aligned_cols=52  Identities=19%  Similarity=0.370  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 037169          631 EKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKL  682 (860)
Q Consensus       631 ~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l  682 (860)
                      .++..|...+..+.......+.++.++.......+..|..+-.+..++...|
T Consensus       213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L  264 (306)
T PF04849_consen  213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHL  264 (306)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3455555555555555555555555554444444444444444444443333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=83.04  E-value=79  Score=35.38  Aligned_cols=47  Identities=19%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHh
Q 037169          639 QLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEH  685 (860)
Q Consensus       639 ~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~  685 (860)
                      ++......+..|...|....+......+.+..|..++..++.+++..
T Consensus       207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~  253 (306)
T PF04849_consen  207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQL  253 (306)
T ss_pred             HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444443434445555555555555555543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=82.55  E-value=81  Score=35.96  Aligned_cols=18  Identities=17%  Similarity=0.279  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 037169          720 QQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       720 q~qi~eLe~kl~~Qeeq~  737 (860)
                      ..++.+++.++...+.++
T Consensus       245 ~~~l~~~~~~l~~~~~~l  262 (423)
T TIGR01843       245 LEELTEAQARLAELRERL  262 (423)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333444444444444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=82.45  E-value=1.1e+02  Score=35.98  Aligned_cols=32  Identities=16%  Similarity=0.369  Sum_probs=14.7

Q ss_pred             HHHHhhcccccccccccChHHHHHHHHHHHHH
Q 037169          563 FASRVRGVELSPARKQIDISKLQKVKMMLEKT  594 (860)
Q Consensus       563 fA~r~r~I~~~p~~~~~~~~~~~~lk~~l~~~  594 (860)
                      +..+++.......+.++-.+-|.+|+.-++.+
T Consensus       343 Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeL  374 (527)
T PF15066_consen  343 LEKKVKELQMKITKQQVFVDIINKLKENIEEL  374 (527)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            34444444444444444444445555554443

>PRK11281 hypothetical protein; Provisional

Probab=82.16  E-value=51  Score=43.14  Aligned_cols=55  Identities=13%  Similarity=0.204  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169          629 QQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK  683 (860)
Q Consensus       629 ~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~  683 (860)
                      ++.++.+++.++...++.+.+++.++..+...-........+.++++.++++.+.
T Consensus       126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~  180 (1113)
T PRK11281        126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK  180 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555555555555555555555555554444444444444555555666655554

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=82.08  E-value=0.57  Score=43.27  Aligned_cols=17  Identities=29%  Similarity=0.386  Sum_probs=14.8

Q ss_pred             EEeeccCCCCccccccC
Q 037169          327 IFAYGQTGTGKTFTMEG  343 (860)
Q Consensus       327 IfaYGqTGSGKTyTM~G  343 (860)
                      ++.+|+||||||+++..
T Consensus         3 ~~i~~~~G~GKT~~~~~   19 (144)
T cd00046           3 VLLAAPTGSGKTLAALL   19 (144)
T ss_pred             EEEECCCCCchhHHHHH
Confidence            57799999999999864

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=81.86  E-value=1.3e+02  Score=41.08  Aligned_cols=28  Identities=32%  Similarity=0.330  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 037169          167 EAWMSLTAANDQLEKVRMGLDNKCFQNL  194 (860)
Q Consensus       167 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~  194 (860)
                      .+..+|..++.+++++.+++.++...+.
T Consensus       728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~  755 (1822)
T KOG4674|consen  728 TLSQELLSANEKLEKLEAELSNLKQEKL  755 (1822)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            3444555666666666666665554433

>PRK10436 hypothetical protein; Provisional

Probab=81.85  E-value=0.65  Score=54.59  Aligned_cols=28  Identities=32%  Similarity=0.376  Sum_probs=24.2

Q ss_pred             hHHHhhCCccEEEEeeccCCCCcccccc
Q 037169          315 LVTSVLDGYNVCIFAYGQTGTGKTFTME  342 (860)
Q Consensus       315 lV~~~l~G~N~~IfaYGqTGSGKTyTM~  342 (860)
                      .+..++..-++.|+..|+||||||.||+
T Consensus       209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~  236 (462)
T PRK10436        209 QFRQALQQPQGLILVTGPTGSGKTVTLY  236 (462)
T ss_pred             HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence            4566777788999999999999999985

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=81.82  E-value=1.1  Score=53.20  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=24.8

Q ss_pred             hhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169          314 PLVTSVLDGYNVCIFAYGQTGTGKTFTME  342 (860)
Q Consensus       314 plV~~~l~G~N~~IfaYGqTGSGKTyTM~  342 (860)
                      ..+..++..-++.|+..|+||||||.||.
T Consensus       232 ~~l~~~~~~~~GlilitGptGSGKTTtL~  260 (486)
T TIGR02533       232 SRFERLIRRPHGIILVTGPTGSGKTTTLY  260 (486)
T ss_pred             HHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence            35666778888899999999999999995

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=81.67  E-value=68  Score=42.03  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=12.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHh
Q 037169          714 VHSGMLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       714 ~~~~~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      ...+.++.++..|++.+-+++.+-
T Consensus       215 ~~~~~l~~~~~~Lq~~in~kR~~~  238 (1109)
T PRK10929        215 KRSQQLDAYLQALRNQLNSQRQRE  238 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555655555554443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=81.55  E-value=55  Score=39.26  Aligned_cols=26  Identities=27%  Similarity=0.383  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          629 QQEKINELESQLESKTQLCRQLEKQL  654 (860)
Q Consensus       629 ~~~k~~ele~~l~~~~~~~~~le~~l  654 (860)
                      ++..+.+.+++++..++...+|.+++
T Consensus       299 l~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  299 LKSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444433

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=81.54  E-value=0.65  Score=56.02  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=24.4

Q ss_pred             hHHHhhCCccEEEEeeccCCCCcccccc
Q 037169          315 LVTSVLDGYNVCIFAYGQTGTGKTFTME  342 (860)
Q Consensus       315 lV~~~l~G~N~~IfaYGqTGSGKTyTM~  342 (860)
                      .+..++..-++.|+..|+||||||.||.
T Consensus       307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~  334 (564)
T TIGR02538       307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY  334 (564)
T ss_pred             HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence            5667777888999999999999999984

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>PF13245 AAA_19: Part of AAA domain

Probab=81.47  E-value=0.76  Score=40.51  Aligned_cols=26  Identities=35%  Similarity=0.397  Sum_probs=18.2

Q ss_pred             HHHhhCCccEEEEeeccCCCCcccccc
Q 037169          316 VTSVLDGYNVCIFAYGQTGTGKTFTME  342 (860)
Q Consensus       316 V~~~l~G~N~~IfaYGqTGSGKTyTM~  342 (860)
                      |..++. -+..+..-|+.|||||+|+.
T Consensus         3 v~~al~-~~~~~vv~g~pGtGKT~~~~   28 (76)
T PF13245_consen    3 VRRALA-GSPLFVVQGPPGTGKTTTLA   28 (76)
T ss_pred             HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence            455556 33445559999999999873

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.24  E-value=23  Score=39.79  Aligned_cols=18  Identities=11%  Similarity=0.171  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 037169          717 GMLQQKIAELEEKLRKKE  734 (860)
Q Consensus       717 ~~lq~qi~eLe~kl~~Qe  734 (860)
                      ..+..++.-...++...+
T Consensus       116 ~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen  116 DSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344445544455554444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=81.07  E-value=18  Score=38.26  Aligned_cols=18  Identities=17%  Similarity=0.137  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 037169          145 AKCEKRIKELKIQCQLKT  162 (860)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~  162 (860)
                      .++++++.+++.++....
T Consensus        96 p~le~el~~l~~~l~~~~  113 (206)
T PRK10884         96 PDLENQVKTLTDKLNNID  113 (206)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            445555555554444433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=80.95  E-value=1.4e+02  Score=40.93  Aligned_cols=15  Identities=13%  Similarity=0.158  Sum_probs=6.6

Q ss_pred             cCCCCCCHHhHHHHH
Q 037169          547 ISPSEQDLGETLSSL  561 (860)
Q Consensus       547 VSP~~~~~~ETl~TL  561 (860)
                      .+|.+..++.++.-|
T Consensus       627 ~t~~~~~~e~~l~qL  641 (1822)
T KOG4674|consen  627 QTEAPRAKEKRLRQL  641 (1822)
T ss_pred             ccccchhHHHHHHHH
Confidence            344444344444444

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=80.89  E-value=0.79  Score=45.37  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=19.6

Q ss_pred             hHHHhhCC-ccEEEEeeccCCCCccccccC
Q 037169          315 LVTSVLDG-YNVCIFAYGQTGTGKTFTMEG  343 (860)
Q Consensus       315 lV~~~l~G-~N~~IfaYGqTGSGKTyTM~G  343 (860)
                      ++..+-.+ .+.-+...|+||||||++|.+
T Consensus        15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~   44 (184)
T PF04851_consen   15 IINSLENKKEERRVLLNAPTGSGKTIIALA   44 (184)
T ss_dssp             HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred             HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence            33333333 355566678999999999963

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=80.53  E-value=0.95  Score=42.26  Aligned_cols=25  Identities=28%  Similarity=0.295  Sum_probs=18.0

Q ss_pred             HHhhCCccEEEEeeccCCCCccccc
Q 037169          317 TSVLDGYNVCIFAYGQTGTGKTFTM  341 (860)
Q Consensus       317 ~~~l~G~N~~IfaYGqTGSGKTyTM  341 (860)
                      ..+.......++-+|++|+|||+.+
T Consensus        12 ~~~~~~~~~~v~i~G~~G~GKT~l~   36 (151)
T cd00009          12 EALELPPPKNLLLYGPPGTGKTTLA   36 (151)
T ss_pred             HHHhCCCCCeEEEECCCCCCHHHHH
Confidence            3333334556888999999999865

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK06620 hypothetical protein; Validated

Probab=80.49  E-value=0.95  Score=47.73  Aligned_cols=18  Identities=22%  Similarity=0.519  Sum_probs=15.8

Q ss_pred             EEEEeeccCCCCcccccc
Q 037169          325 VCIFAYGQTGTGKTFTME  342 (860)
Q Consensus       325 ~~IfaYGqTGSGKTyTM~  342 (860)
                      -.+|-||++||||||.+.
T Consensus        45 ~~l~l~Gp~G~GKThLl~   62 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTK   62 (214)
T ss_pred             ceEEEECCCCCCHHHHHH
Confidence            358999999999999884

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=80.41  E-value=56  Score=42.10  Aligned_cols=20  Identities=15%  Similarity=0.154  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 037169          718 MLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       718 ~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      ..+.++..|+.++++..+.+
T Consensus      1728 ~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1728 DKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred             HHHHHhhhHHHHHHHHHHHH
Confidence            34555666666666554443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=80.36  E-value=85  Score=34.44  Aligned_cols=29  Identities=17%  Similarity=0.352  Sum_probs=14.4

Q ss_pred             HHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169          655 LQVSEGMKGKEEICSNVQRKVKELENKLK  683 (860)
Q Consensus       655 ~~l~~~~~~~ee~~~~lq~~~~ele~~l~  683 (860)
                      ..+........+.|+.+...-..+...+.
T Consensus        63 s~LkREnq~l~e~c~~lek~rqKlshdlq   91 (307)
T PF10481_consen   63 SALKRENQSLMESCENLEKTRQKLSHDLQ   91 (307)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhhHHHh
Confidence            33333444445566666555555554443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=80.35  E-value=1.2e+02  Score=39.26  Aligned_cols=52  Identities=27%  Similarity=0.325  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Q 037169          633 INELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKE  684 (860)
Q Consensus       633 ~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~  684 (860)
                      .+++..+++++...+..+++++..+.+..-...+++..+..+...++.+|..
T Consensus       443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~  494 (1041)
T KOG0243|consen  443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN  494 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444445555555555554444555555555555555555543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.28  E-value=84  Score=39.24  Aligned_cols=10  Identities=40%  Similarity=0.707  Sum_probs=6.2

Q ss_pred             HHHHHhhccc
Q 037169          562 NFASRVRGVE  571 (860)
Q Consensus       562 ~fA~r~r~I~  571 (860)
                      .|++|+..+.
T Consensus       583 ~f~srL~~ls  592 (970)
T KOG0946|consen  583 NFISRLQRLS  592 (970)
T ss_pred             HHHHHHHHhh
Confidence            5677766553

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=80.27  E-value=80  Score=33.04  Aligned_cols=59  Identities=27%  Similarity=0.456  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 037169          668 CSNVQRKVKELENKLKEHDQ-----SENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAEL  726 (860)
Q Consensus       668 ~~~lq~~~~ele~~l~~~~q-----~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eL  726 (860)
                      .+.+..+++.+..+|++...     ..++..|++.+..+|.++...+..+......|.+.+.+|
T Consensus       139 ~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L  202 (205)
T KOG1003|consen  139 EEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL  202 (205)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555555554332     223445777777777777777777766556665555544

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=80.15  E-value=32  Score=41.41  Aligned_cols=23  Identities=13%  Similarity=0.159  Sum_probs=14.2

Q ss_pred             CCchhhHHHHHHHHHHHhcCCce
Q 037169          348 RGVNYRTLELLFKIAEERKETFT  370 (860)
Q Consensus       348 ~GIipRal~~LF~~~~~~~~~~~  370 (860)
                      .|.|.+....|=..+....-+++
T Consensus       163 h~av~~~~reIee~L~~agldyD  185 (652)
T COG2433         163 HGAVKRVVREIEEKLDEAGLDYD  185 (652)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCce
Confidence            36777777777777765443333

>PRK12704 phosphodiesterase; Provisional

Probab=80.12  E-value=1.4e+02  Score=35.88  Aligned_cols=10  Identities=40%  Similarity=0.594  Sum_probs=4.1

Q ss_pred             HHHHHHHHHH
Q 037169          722 KIAELEEKLR  731 (860)
Q Consensus       722 qi~eLe~kl~  731 (860)
                      .+.+.+++.+
T Consensus       174 ~~~~~~~~~~  183 (520)
T PRK12704        174 LIKEIEEEAK  183 (520)
T ss_pred             HHHHHHHHHH
Confidence            3344444444

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=80.06  E-value=1.2  Score=48.19  Aligned_cols=66  Identities=26%  Similarity=0.273  Sum_probs=36.4

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEecCCCCCccceeEEEE-ec-cchhhHHHhhCCc---cEEEEeeccCCCCccccc
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVDV-FA-DASPLVTSVLDGY---NVCIFAYGQTGTGKTFTM  341 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~dV-f~-~v~plV~~~l~G~---N~~IfaYGqTGSGKTyTM  341 (860)
                      +++||-|-.-|....     ...++.........+    .+. +. ...+.+..++...   .+.|+..|+||||||.+|
T Consensus        74 ~~~R~~i~~~p~~~~-----~~~~iR~~~~~~~sl----e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l  144 (270)
T PF00437_consen   74 DGIRVRITTPPVSGG-----PTIVIRKFSSKPFSL----EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLL  144 (270)
T ss_dssp             TSEEEEEEETTTSTS-----EEEEEEEETSS--CH----CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred             CCeEEEEEEcCCcCC-----cccceeccccccccH----hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHH
Confidence            788888887776544     223333111111111    111 11 1234444445444   677788899999999998

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=80.01  E-value=0.64  Score=49.16  Aligned_cols=16  Identities=44%  Similarity=0.837  Sum_probs=14.2

Q ss_pred             EEEeeccCCCCccccc
Q 037169          326 CIFAYGQTGTGKTFTM  341 (860)
Q Consensus       326 ~IfaYGqTGSGKTyTM  341 (860)
                      .+|-||++|+||||-|
T Consensus        36 ~l~l~G~~G~GKTHLL   51 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLL   51 (219)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             ceEEECCCCCCHHHHH
Confidence            4788999999999965

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	860
2h58_A	330	Crystal Structure Of The Kifc3 Motor Domain In Comp		5e-85
3h4s_A	386	Structure Of The Complex Of A Mitotic Kinesin With		1e-70
1sdm_A	369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		2e-69
3b6u_A	372	Crystal Structure Of The Motor Domain Of Human Kine		2e-64
1goj_A	355	Structure Of A Fast Kinesin: Implications For Atpas		2e-62
3t0q_A	349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		7e-60
2rep_A	376	Crystal Structure Of The Motor Domain Of Human Kine		1e-58
3b6v_A	395	Crystal Structure Of The Motor Domain Of Human Kine		2e-58
4gkr_A	371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		3e-57
2ncd_A	420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		4e-57
3kar_A	346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		4e-57
1bg2_A	325	Human Ubiquitous Kinesin Motor Domain Length = 325		4e-57
1cz7_A	406	The Crystal Structure Of A Minus-End Directed Micro		4e-57
1mkj_A	349	Human Kinesin Motor Domain With Docked Neck Linker		5e-57
1f9t_A	358	Crystal Structures Of Kinesin Mutants Reveal A Sign		6e-57
4atx_C	340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		8e-57
1n6m_A	409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		2e-56
3u06_A	412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		3e-56
4etp_A	403	C-Terminal Motor And Motor Homology Domain Of Kar3v		3e-56
1f9w_A	347	Crystal Structures Of Mutants Reveal A Signalling P		3e-56
1f9u_A	347	Crystal Structures Of Mutants Reveal A Signalling P		4e-56
2y5w_A	365	Crystal Structure Of Drosophila Melanogaster Kinesi		4e-56
1f9v_A	347	Crystal Structures Of Mutants Reveal A Signalling P		4e-56
3l1c_A	383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		7e-56
4h1g_A	715	Structure Of Candida Albicans Kar3 Motor Domain Fus		4e-55
3gbj_A	354	Crystal Structure Of The Motor Domain Of Kinesin Ki		7e-54
4a14_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		1e-52
2vvg_A	350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		7e-51
2xt3_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		2e-50
1x88_A	359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		3e-50
4a1z_A	368	Eg5-1 Length = 368		3e-50
4a28_A	368	Eg5-2 Length = 368		3e-50
2owm_A	443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		3e-50
3hqd_A	369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		3e-50
1ii6_A	368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		3e-50
4ap0_A	370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		4e-50
1q0b_A	367	Crystal Structure Of The Motor Protein Ksp In Compl		4e-50
3zcw_A	348	Eg5 - New Allosteric Binding Site Length = 348		7e-50
4aqv_C	373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		7e-50
2wbe_C	373	Kinesin-5-Tubulin Complex With Amppnp Length = 373		6e-49
3lre_A	355	Crystal Structure Analysis Of Human Kinesin-8 Motor		2e-48
1ia0_K	394	Kif1a Head-Microtubule Complex Structure In Atp-For		3e-46
1i5s_A	367	Crystal Structure Of The Kif1a Motor Domain Complex		3e-46
3nwn_A	359	Crystal Structure Of The Human Kif9 Motor Domain In		4e-46
1i6i_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		4e-46
1vfv_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		1e-45
3bfn_A	388	Crystal Structure Of The Motor Domain Of Human Kine		6e-44
1t5c_A	349	Crystal Structure Of The Motor Domain Of Human Kine		7e-43
2heh_A	387	Crystal Structure Of The Kif2c Motor Domain (Casp T		2e-32
1v8j_A	410	The Crystal Structure Of The Minimal Functional Dom		2e-32
3edl_D	331	Kinesin13-Microtubule Ring Complex Length = 331		5e-32
3dc4_A	344	Crystal Structure Of The Drosophila Kinesin Family		2e-31
2gry_A	420	Crystal Structure Of The Human Kif2 Motor Domain In		2e-31
3pxn_A	344	Crystal Structure Of The Drosophila Kinesin Family		2e-31
2kin_A	238	Kinesin (Monomeric) From Rattus Norvegicus Length =		5e-31
1ry6_A	360	Crystal Structure Of Internal Kinesin Motor Domain		1e-28
2kin_B	100	Kinesin (Monomeric) From Rattus Norvegicus Length =		7e-14
3kin_B	117	Kinesin (Dimeric) From Rattus Norvegicus Length = 1		7e-13

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330

Iteration: 1
 Score =  312 bits (799), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 164/328 (50%), Positives = 216/328 (65%), Gaps = 23/328 (7%)
Query: 267 GNIRVFCRCRPLSKEEASAGHAM-VVDFSAAKDGELGIL-------------------TV 306
           GNIRV  R RP++KE+     A   V F A  D  + +L                     
Sbjct: 4   GNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQ 63
Query: 307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
           DVF +   LVTS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   +E+ 
Sbjct: 64  DVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKA 123
Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENIKEV 424
             + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE +++++ ++
Sbjct: 124 SDWEYTITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDI 182
Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
             V   G   R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGSER+ 
Sbjct: 183 NKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 242
Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
           K+  +G RL+EAQ+IN+SLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSKTLM 
Sbjct: 243 KSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 302
Query: 545 LQISPSEQDLGETLSSLNFASRVRGVEL 572
           +Q+SP E++  ETL SL FA RVR VEL
Sbjct: 303 VQVSPVEKNTSETLYSLKFAERVRSVEL 330

>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386

Iteration: 1
 Score =  265 bits (676), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/362 (41%), Positives = 217/362 (59%), Gaps = 36/362 (9%)
Query: 267 GNIRVFCRCRPLSKEEASAG--------------------------HAMVVDFSAAKDGE 300
           G IRV+CR RPL+++E+S                            +  V D  A++D  
Sbjct: 13  GKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQD-- 70
Query: 301 LGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK 360
                 D+F D   LV S +DGYNVCIFAYGQTG+GKTFT+ G + N G+  R  + LF 
Sbjct: 71  ------DIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFN 124
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLL-DTSPTSKKLEIRQASEGFHHVPGLTEAKIE 419
           I +   + F++S+    +E+Y + + DLL   S    KLEI++ S+G   V  +T   I 
Sbjct: 125 ILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPIS 184
Query: 420 NIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAG 479
            ++E+  +L  GS  R V   N+NE SSRSH +L + +++ +L      + KL  VDLAG
Sbjct: 185 TLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARGKLSFVDLAG 244
Query: 480 SERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDS 539
           SER+ K+   G +LKEAQ+IN+SLSALGDVI +L++ + HIPYRN KLT L+ DSLGG++
Sbjct: 245 SERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSLGGNA 304
Query: 540 KTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVG 599
           KTLMF+ +SP+E +L ET +SL +ASRVR +   P+ K I   ++ ++K ++   K++ G
Sbjct: 305 KTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPS-KHISSKEMVRLKKLVAYWKEQAG 363
Query: 600 SK 601
            K
Sbjct: 364 KK 365

>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369

Iteration: 1
 Score =  260 bits (665), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 219/371 (59%), Gaps = 37/371 (9%)
Query: 267 GNIRVFCRCRPLSKEEASAG--------------------------HAMVVDFSAAKDGE 300
           G IRV+CR RPL ++E  A                           +  V D +A +D  
Sbjct: 5   GKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQD-- 62
Query: 301 LGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK 360
                 DVF D   LV S +DGYNVCIFAYGQTG+GKTFT+ G   N G+  R +  LF+
Sbjct: 63  ------DVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFR 116
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLTEAKIE 419
           I ++    F++S+    +E+Y + + DLL      + KL+I++ S+G   V  +T   I 
Sbjct: 117 IMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSIS 176
Query: 420 NIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAG 479
             +E+  ++  GS  R      +NE SSRSH ++ + +++ NL      + KL  VDLAG
Sbjct: 177 TYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAG 236
Query: 480 SERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDS 539
           SER+ K+   G +LKEAQ+IN+SLSALGDVIS+L++ + HIPYRN KLT L+ DSLGG++
Sbjct: 237 SERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNA 296
Query: 540 KTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVG 599
           KTLMF+ ISP+E +L ET +SL +ASRVR +   P+ K +   ++ ++K ++   K++ G
Sbjct: 297 KTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPS-KNVSSKEVARLKKLVSYWKEQAG 355
Query: 600 SKDDVIQKLEE 610
            K D  ++LEE
Sbjct: 356 RKGD-DEELEE 365

>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372

Iteration: 1
 Score =  244 bits (623), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 145/339 (42%), Positives = 209/339 (61%), Gaps = 35/339 (10%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGI-------------LTVDVFADAS- 313
           ++RV  RCRP++ +E +A +  VVD    K G++ +              T D   D + 
Sbjct: 22  SVRVVVRCRPMNGKEKAASYDKVVDVDV-KLGQVSVKNPKGTAHEMPKTFTFDAVYDWNA 80
Query: 314 -----------PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ---QNRGVNYRTLELLF 359
                      PLV SVL G+N  IFAYGQTGTGKT+TMEG +   + RGV   + + +F
Sbjct: 81  KQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIF 140
Query: 360 KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIE 419
                R +   Y +  S LE+Y E+IRDLL    T K+LE+++  +   +V  L+    +
Sbjct: 141 THIS-RSQNQQYLVRASYLEIYQEEIRDLLSKDQT-KRLELKERPDTGVYVKDLSSFVTK 198
Query: 420 NIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL-INGE--CTKSKLWLVD 476
           ++KE+  V+++G+  R+VG+ N+NEHSSRSH +  I+++   + ++GE      KL LVD
Sbjct: 199 SVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVD 258
Query: 477 LAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDSL 535
           LAGSER AKT  QGERLKEA  IN SLSALG+VIS+L   KS HIPYR+SKLT LLQDSL
Sbjct: 259 LAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSL 318
Query: 536 GGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSP 574
           GG++KT+M   + P+  ++ ETL++L +A+R + ++  P
Sbjct: 319 GGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKP 357

>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355

Iteration: 1
 Score =  237 bits (604), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/362 (38%), Positives = 206/362 (56%), Gaps = 45/362 (12%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSA-------AKDGELGILTVDVFADAS------- 313
           +I+V  R RP ++ E  +G   +V F         +K+ + G  T D   D S       
Sbjct: 7   SIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQ-GSFTFDRVFDMSCKQSDIF 65
Query: 314 -----PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ----QNRGVNYRTLELLFKIAEE 364
                P V  +L+GYN  +FAYGQTG GK++TM GT       RGV  R +E +F     
Sbjct: 66  DFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILS 125
Query: 365 RKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEV 424
                 Y++ VS +E+Y E+IRDLL  +P +  L + +      +V GL E  + +++EV
Sbjct: 126 SAANIEYTVRVSYMEIYMERIRDLL--APQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEV 183
Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
           ++V+  G NARAV + N+N+ SSRSH +  I++  KN+  G     +L+LVDLAGSE++ 
Sbjct: 184 YEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVG 243
Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDSLGGDSKTLM 543
           KT   G+ L+EA+ IN+SLSALG VI++L   KS H+PYR+SKLT +LQ+SLGG+S+T +
Sbjct: 244 KTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTL 303
Query: 544 FLQISPSEQDLGETLSSLNFASRVRGV--------ELSPARKQIDISKLQKVKMMLEKTK 595
            +  SPS  +  ETLS+L F  R + +        ELSPA          ++K ML K K
Sbjct: 304 IINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPA----------ELKQMLAKAK 353
Query: 596 QE 597
            +
Sbjct: 354 TQ 355

>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349

Iteration: 1
 Score =  228 bits (582), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 144/345 (41%), Positives = 192/345 (55%), Gaps = 40/345 (11%)
Query: 267 GNIRVFCRCRP-LSKEEASAGHAMVVDFSAAKDG--------ELGILTVD---------- 307
           GNIRV+CR RP L  E     H ++  F+ AK          E  IL+ +          
Sbjct: 5   GNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPS 64
Query: 308 -----VFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIA 362
                +F +   LV S LDGYNVCIFAYGQTG+GKT+TM       G+   TL  +FK  
Sbjct: 65  HTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM--LNAGDGMIPMTLSHIFKWT 122
Query: 363 EERKET-FTYSISVSALEVYNEQIRDLL---------DTSPTSKKLEIRQASEG-FHHVP 411
              KE  + Y +    +E+YNE I DLL         D    S+K +IR   E    ++ 
Sbjct: 123 ANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYIT 182
Query: 412 GLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK 471
            +T  K+ +  +V  +L   S  R+  +   NE SSRSH +  + +  +NL  GE ++ K
Sbjct: 183 NVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGK 242
Query: 472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLT 528
           L LVDLAGSER+  + V GERL+E QNIN+SLS LGDVI +L T      +IP+RNSKLT
Sbjct: 243 LNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLT 302
Query: 529 HLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELS 573
           +LLQ SL GDSKTLMF+ I P    + ETL+SL FAS+V   +++
Sbjct: 303 YLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347

>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376

Iteration: 1
 Score =  224 bits (572), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 148/354 (41%), Positives = 194/354 (54%), Gaps = 55/354 (15%)
Query: 267 GNIRVFCRCRPLSKEEASAGHAMVV----------------------------------- 291
           GNIRVFCR RP+   E +    +++                                   
Sbjct: 22  GNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPP 81
Query: 292 --DFSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ---- 345
             DFS  +    G    +VF + + LV S LDGY VCIFAYGQTG+GKTFTMEG      
Sbjct: 82  RHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDP 141
Query: 346 QNRGVNYRTLELLFKIAEE-RKETFTYSISVSALEVYNEQIRDLLDTSPTSK----KLEI 400
           Q  G+  R L  LF +A+E   + +TYS   S +E+YNE +RDLL T  T K    + EI
Sbjct: 142 QLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATG-TRKGQGGECEI 200
Query: 401 RQASEGFHHVPGLTEAKIENI---KEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISV 457
           R+A  G   +  +T A+   +   KEV  +LH+    RAV     NE SSRSH +  + +
Sbjct: 201 RRAGPGSEEL-TVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQI 259
Query: 458 KAKNLINGECTKSKLWLVDLAGSERLAKTEVQG----ERLKEAQNINRSLSALGDVISSL 513
             ++   G    + L LVDLAGSERL      G    ERL+E Q IN SLS LG VI +L
Sbjct: 260 SGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMAL 319
Query: 514 ATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRV 567
           + K  H+PYRNSKLT+LLQ+SLGG +K LMF+ ISP E+++ E+L+SL FAS+V
Sbjct: 320 SNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373

>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395

Iteration: 1
 Score =  224 bits (571), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 200/369 (54%), Gaps = 73/369 (19%)
Query: 269 IRVFCRCRPLSKEEASAGHAMVVDFSA-----------AKDGELG-ILTVDVFADAS--- 313
           ++V  RCRPLS++E +AGH  ++               A  GEL    T D   DAS   
Sbjct: 23  LKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASSKQ 82
Query: 314 ---------PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT---QQNRGVNYRTLELLFKI 361
                    PL+ SVL G+N  +FAYGQTGTGKT+TM+GT    + RGV     E +F  
Sbjct: 83  ADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIFTH 142
Query: 362 AEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENI 421
              R +   Y +  S LE+Y E+IRDLL   P  K+LE+++  E   ++  L+    +N+
Sbjct: 143 I-SRSQNQQYLVRASYLEIYQEEIRDLLSKEP-GKRLELKENPETGVYIKDLSSFVTKNV 200
Query: 422 KEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTK-----------S 470
           KE+  V+++G+  RAVGS ++NE SSRSH +  I+V        EC++            
Sbjct: 201 KEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITV--------ECSERGSDGQDHIRVG 252
Query: 471 KLWLVDLAGSERLAKT------------------------EVQGERLKEAQNINRSLSAL 506
           KL LVDLAGSER  K                            GER KEA  IN SLSAL
Sbjct: 253 KLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSAL 312
Query: 507 GDVISSLA-TKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFAS 565
           G+VI++LA  +S HIPYR+SKLT LLQDSLGG++KT+M   + P+     E+LS+L FA+
Sbjct: 313 GNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFAN 372
Query: 566 RVRGVELSP 574
           R + ++  P
Sbjct: 373 RAKNIKNKP 381

>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371

Iteration: 1
 Score =  220 bits (560), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 142/344 (41%), Positives = 194/344 (56%), Gaps = 42/344 (12%)
Query: 267 GNIRVFCRCRP-LSKEEASAGHAMVVDFSAAKDGELGILTVD------------------ 307
           GNIRV+CR RP L  E+ +  H  V  F    +G+ G +T++                  
Sbjct: 28  GNIRVYCRIRPPLPHEDDNIEHIKVQPFDD-DNGDQG-MTINRGNSQVIPFKFDKIFDQQ 85
Query: 308 -----VFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK-I 361
                +F +   L+ S LDGYNVCIFAYGQTG+GKT+TM       G+   T+  +F  I
Sbjct: 86  ETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTM--LNPGDGIVPATINHIFSWI 143
Query: 362 AEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK---------KLEIRQASE-GFHHVP 411
            +     ++Y +S   +E+YNE I DLL +   S+         K EIR   E    ++ 
Sbjct: 144 DKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYIT 203
Query: 412 GLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK 471
            +T   +++   V  VL   +  R+  S   NEHSSRSH +  I ++ KN   GE ++  
Sbjct: 204 NITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQGI 263
Query: 472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLT 528
           L LVDLAGSERL  + V GERL+E Q+IN+SLS LGDVI +L +  G   HIP+RNSKLT
Sbjct: 264 LNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSKLT 323
Query: 529 HLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
           +LLQ SL G SKTLMF+ ISP+   L ET++SL FAS+V   ++
Sbjct: 324 YLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTKM 367

>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420

Iteration: 1
 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 139/343 (40%), Positives = 190/343 (55%), Gaps = 32/343 (9%)
Query: 261 STIQVLGNIRVFCRCR-PLSKEE-----------ASAGHAMVVDFSAAKDGELGILTV-- 306
           + + + GNIRVFCR R PL  EE            S      +D  A       I +   
Sbjct: 61  TVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQ 120
Query: 307 ---------DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEL 357
                    D+F   SPL+ S LDGYN+CIFAYGQTG+GKT+TM+G  ++ GV  RT++L
Sbjct: 121 VFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDL 180
Query: 358 LF-KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLT 414
           LF  I   R   + Y I  + LE+YNE + DLL  S   K +EIR A    +  +V  +T
Sbjct: 181 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL--SNEQKDMEIRMAKNNKNDIYVSNIT 238
Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWL 474
           E  + +   +  ++H     RA  S   NE SSRSH +  + +  ++    E +   + L
Sbjct: 239 EETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINL 298
Query: 475 VDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS 534
           VDLAGSE   KT     R+ E +NINRSLS L +VI +L  K  HIPYRNSKLTHLL  S
Sbjct: 299 VDLAGSES-PKTST---RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS 354
Query: 535 LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARK 577
           LGG+SKTLMF+ +SP +    E++ SL FA+ V   +++ A++
Sbjct: 355 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR 397

>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346

Iteration: 1
 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/344 (41%), Positives = 188/344 (54%), Gaps = 39/344 (11%)
Query: 266 LGNIRVFCRCRPLSK---------------EEASAGHAM----------VVDFSAAKDGE 300
           +GNIRV+CR RP  K               ++ S   +M          V +F   K  +
Sbjct: 1   MGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFD 60
Query: 301 LGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK 360
                VDVF +   LV S LDGYNVCIFAYGQTG+GKTFTM       G+   T+  +F 
Sbjct: 61  QQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFN 118
Query: 361 -IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASEGFHHVPG 412
            I + + + + Y ++   +E+YNE I DLL +   +K       K EIR   E       
Sbjct: 119 WINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTIT 178
Query: 413 LTEA-KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK 471
              + K+E+ + V  +L   +  R+  S   NEHSSRSH +  I +   N   G  +   
Sbjct: 179 NVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGT 238
Query: 472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLT 528
           L LVDLAGSER+  ++V G+RL+E QNIN+SLS LGDVI +L        HIP+RNSKLT
Sbjct: 239 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLT 298
Query: 529 HLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
           +LLQ SL GDSKTLMF+ ISPS   + ETL+SL FAS+V    L
Sbjct: 299 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342

>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325

Iteration: 1
 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 131/324 (40%), Positives = 186/324 (57%), Gaps = 27/324 (8%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVD-----------------VFA 310
           NI+V CR RPL++ E + G   +  F     GE  ++                    V+ 
Sbjct: 8   NIKVMCRFRPLNESEVNRGDKYIAKFQ----GEDTVVIASKPYAFDRVFQSSTSQEQVYN 63
Query: 311 D-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TQQNRGVNYRTLELLFKIAEERK 366
           D A  +V  VL+GYN  IFAYGQT +GKT TMEG     +  G+  R ++ +F       
Sbjct: 64  DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWD 426
           E   + I VS  E+Y ++IRDLLD S T+  L + +      +V G TE  + +  EV D
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTN--LSVHEDKNRVPYVKGCTERFVCSPDEVMD 181
Query: 427 VLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKT 486
            +  G + R V   N+NEHSSRSH +  I+VK +N    +    KL+LVDLAGSE+++KT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241
Query: 487 EVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ 546
             +G  L EA+NIN+SLSALG+VIS+LA  S ++PYR+SK+T +LQDSLGG+ +T + + 
Sbjct: 242 GAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVIC 301
Query: 547 ISPSEQDLGETLSSLNFASRVRGV 570
            SPS  +  ET S+L F  R + +
Sbjct: 302 CSPSSYNESETKSTLLFGQRAKTI 325

>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406

Iteration: 1
 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 139/343 (40%), Positives = 190/343 (55%), Gaps = 32/343 (9%)
Query: 261 STIQVLGNIRVFCRCR-PLSKEE-----------ASAGHAMVVDFSAAKDGELGILTV-- 306
           + + + GNIRVFCR R PL  EE            S      +D  A       I +   
Sbjct: 47  TVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQ 106
Query: 307 ---------DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEL 357
                    D+F   SPL+ S LDGYN+CIFAYGQTG+GKT+TM+G  ++ GV  RT++L
Sbjct: 107 VFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDL 166
Query: 358 LF-KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLT 414
           LF  I   R   + Y I  + LE+YNE + DLL  S   K +EIR A    +  +V  +T
Sbjct: 167 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL--SNEQKDMEIRMAKNNKNDIYVSNIT 224
Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWL 474
           E  + +   +  ++H     RA  S   NE SSRSH +  + +  ++    E +   + L
Sbjct: 225 EETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINL 284
Query: 475 VDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS 534
           VDLAGSE   KT     R+ E +NINRSLS L +VI +L  K  HIPYRNSKLTHLL  S
Sbjct: 285 VDLAGSES-PKTST---RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS 340
Query: 535 LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARK 577
           LGG+SKTLMF+ +SP +    E++ SL FA+ V   +++ A++
Sbjct: 341 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR 383

>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349

Iteration: 1
 Score =  219 bits (558), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 131/325 (40%), Positives = 187/325 (57%), Gaps = 27/325 (8%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVD-----------------VFA 310
           NI+V CR RPL++ E + G   +  F     GE  ++                    V+ 
Sbjct: 8   NIKVMCRFRPLNESEVNRGDKYIAKFQ----GEDTVVIASKPYAFDRVFQSSTSQEQVYN 63
Query: 311 D-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TQQNRGVNYRTLELLFKIAEERK 366
           D A  +V  VL+GYN  IFAYGQT +GKT TMEG     +  G+  R ++ +F       
Sbjct: 64  DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWD 426
           E   + I VS  E+Y ++IRDLLD S T+  L + +      +V G TE  + +  EV D
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTN--LSVHEDKNRVPYVKGCTERFVCSPDEVMD 181
Query: 427 VLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKT 486
            +  G + R V   N+NEHSSRSH +  I+VK +N    +    KL+LVDLAGSE+++KT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241
Query: 487 EVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ 546
             +G  L EA+NIN+SLSALG+VIS+LA  S ++PYR+SK+T +LQDSLGG+ +T + + 
Sbjct: 242 GAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVIC 301
Query: 547 ISPSEQDLGETLSSLNFASRVRGVE 571
            SPS  +  ET S+L F  R + ++
Sbjct: 302 CSPSSYNESETKSTLLFGQRAKTIK 326

>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358

Iteration: 1
 Score =  219 bits (558), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 143/343 (41%), Positives = 187/343 (54%), Gaps = 39/343 (11%)
Query: 267 GNIRVFCRCRPLSK---------------EEASAGHAM----------VVDFSAAKDGEL 301
           GNIRV+CR RP  K               ++ S   +M          V +F   K  + 
Sbjct: 14  GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 73
Query: 302 GILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK- 360
               VDVF +   LV S LDGYNVCIFAYGQTG+GKTFTM       G+   T+  +F  
Sbjct: 74  QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 131
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASEGFHHVPGL 413
           I + + + + Y ++   +E+YNE I DLL +   +K       K EIR   E        
Sbjct: 132 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 191
Query: 414 TEA-KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
             + K+E+ + V  +L   +  R+  S   NEHSSRSH +  I +   N   G  +   L
Sbjct: 192 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL 251
Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLTH 529
            LVDLAGSER+  ++V G+RL+E QNIN+SLS LGDVI +L        HIP+RNSKLT+
Sbjct: 252 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 311
Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
           LLQ SL GDSKTLMF+ ISPS   + ETL+SL FAS+V    L
Sbjct: 312 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 354

>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340

Iteration: 1
 Score =  218 bits (556), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 131/325 (40%), Positives = 186/325 (57%), Gaps = 27/325 (8%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVD-----------------VFA 310
           NI+V CR RPL++ E + G   V  F     GE  ++                    V+ 
Sbjct: 8   NIKVMCRFRPLNESEVNRGDKYVAKFQ----GEDTVMIASKPYAFDRVFQSSTSQEQVYN 63
Query: 311 D-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TQQNRGVNYRTLELLFKIAEERK 366
           D A  +V  VL+GYN  IFAYGQT +GK  TMEG     +  G+  R ++ +F       
Sbjct: 64  DCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWD 426
           E   + I VS  E+Y ++IRDLLD S T+  L + +      +V G TE  + +  EV D
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTN--LSVHEDKNRVPYVKGCTERFVCSPDEVMD 181
Query: 427 VLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKT 486
            +  G + R V   N+NEHSSRSH +  I+VK +N    +    KL+LVDLAGSE+++KT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241
Query: 487 EVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ 546
             +G  L EA+NIN+SLSALG+VIS+LA  S ++PYR+SK+T +LQDSLGG+ +T + + 
Sbjct: 242 GAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVIC 301
Query: 547 ISPSEQDLGETLSSLNFASRVRGVE 571
            SPS  +  ET S+L F  R + ++
Sbjct: 302 CSPSSYNESETKSTLLFGQRAKTIK 326

>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409

Iteration: 1
 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/343 (40%), Positives = 189/343 (55%), Gaps = 32/343 (9%)
Query: 261 STIQVLGNIRVFCRCR-PLSKEE-----------ASAGHAMVVDFSAAKDGELGILTV-- 306
           + + + GNIRVFCR R PL  EE            S      +D  A       I +   
Sbjct: 50  TVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQ 109
Query: 307 ---------DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEL 357
                    D+F   SPL+ S LDGYN+CIFAYGQTG+GKT+TM+G  ++ GV  RT++L
Sbjct: 110 VFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDL 169
Query: 358 LF-KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLT 414
           LF  I   R   + Y I  + LE+YNE + DLL  S   K +EIR A    +  +V  +T
Sbjct: 170 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL--SNEQKDMEIRMAKNNKNDIYVSNIT 227
Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWL 474
           E  + +   +  ++H     RA  S   NE SSRSH +  + +  ++    E +   + L
Sbjct: 228 EETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINL 287
Query: 475 VDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS 534
           VDLAGSE   KT     R+ E +NI RSLS L +VI +L  K  HIPYRNSKLTHLL  S
Sbjct: 288 VDLAGSES-PKTST---RMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS 343
Query: 535 LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARK 577
           LGG+SKTLMF+ +SP +    E++ SL FA+ V   +++ A++
Sbjct: 344 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR 386

>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412

Iteration: 1
 Score =  217 bits (552), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 138/336 (41%), Positives = 186/336 (55%), Gaps = 32/336 (9%)
Query: 268 NIRVFCRCR-PLSKEE-----------ASAGHAMVVDFSAAKDGELGILTV--------- 306
           NIRVFCR R PL  EE            S      +D  A       I +          
Sbjct: 60  NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 119
Query: 307 --DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLF-KIAE 363
             D+F   SPL+ S LDGYN+CIFAYGQTG+GKT+TM+G  ++ GV  RT++LLF  I  
Sbjct: 120 QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 179
Query: 364 ERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENI 421
            R   + Y I  + LE+YNE + DLL  S   K +EIR A    +  +V  +TE  + + 
Sbjct: 180 YRNLGWEYEIKATFLEIYNEVLYDLL--SNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 237
Query: 422 KEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSE 481
             +  ++H     RA  S   NE SSRSH +  + +  ++    E +   + LVDLAGSE
Sbjct: 238 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE 297
Query: 482 RLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKT 541
              KT     R+ E +NINRSLS L +VI +L  K  HIPYRNSKLTHLL  SLGG+SKT
Sbjct: 298 S-PKTST---RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKT 353
Query: 542 LMFLQISPSEQDLGETLSSLNFASRVRGVELSPARK 577
           LMF+ +SP +    E++ SL FA+ V   +++ A++
Sbjct: 354 LMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR 389

>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403

Iteration: 1
 Score =  216 bits (551), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 142/343 (41%), Positives = 187/343 (54%), Gaps = 39/343 (11%)
Query: 267 GNIRVFCRCRPLSK---------------EEASAGHAMVV----------DFSAAKDGEL 301
           GNIRV+ R RP  K               ++ S   +M V          +F   K  + 
Sbjct: 59  GNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 118
Query: 302 GILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK- 360
               VDVF +   LV S LDGYNV IFAYGQTG+GKTFTM       G+   T+  +F  
Sbjct: 119 QDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 176
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASEGFHHVPGL 413
           I + + + + Y ++   +E+YNE I DLL +   +K       K EIR   E        
Sbjct: 177 INKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 236
Query: 414 TEA-KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
             + K+E+ + V  +L   +  R+  S   NEHSSRSH +  I +   N   G  +   L
Sbjct: 237 VTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL 296
Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA---TKSGHIPYRNSKLTH 529
            LVDLAGSER+  ++V G+RL+E QNIN+SLSALGDVI +L    +   HIP+RNSKLT+
Sbjct: 297 NLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTY 356
Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
           LLQ SL GDSKTLMF+ ISPS   + ETL+SL FAS+V    L
Sbjct: 357 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399

>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score =  216 bits (551), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 142/343 (41%), Positives = 186/343 (54%), Gaps = 39/343 (11%)
Query: 267 GNIRVFCRCRPLSK---------------EEASAGHAM----------VVDFSAAKDGEL 301
           GNIRV+CR RP  K               ++ S   +M          V +F   K  + 
Sbjct: 3   GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 62
Query: 302 GILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK- 360
               VDVF +   LV S LDGYNVCIFAYGQTG+GKTFTM       G+   T+  +F  
Sbjct: 63  QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 120
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASEGFHHVPGL 413
           I + + + + Y ++   +E+YNE I DLL +   +K       K EIR   E        
Sbjct: 121 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 180
Query: 414 TEA-KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
             + K+E+ + V  +L   +  R+  S   NEHSSRSH +  I +   N   G  +   L
Sbjct: 181 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL 240
Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLTH 529
            LVDLAGS R+  ++V G+RL+E QNIN+SLS LGDVI +L        HIP+RNSKLT+
Sbjct: 241 NLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 300
Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
           LLQ SL GDSKTLMF+ ISPS   + ETL+SL FAS+V    L
Sbjct: 301 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343

>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score =  216 bits (550), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 142/343 (41%), Positives = 186/343 (54%), Gaps = 39/343 (11%)
Query: 267 GNIRVFCRCRPLSK---------------EEASAGHAM----------VVDFSAAKDGEL 301
           GNIRV+CR RP  K               ++ S   +M          V +F   K  + 
Sbjct: 3   GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 62
Query: 302 GILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK- 360
               VDVF +   LV S LDGYNVCIFAYGQTG+GKTFTM       G+   T+  +F  
Sbjct: 63  QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 120
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASEGFHHVPGL 413
           I + + + + Y ++   +E+YNE I DLL +   +K       K EIR   E        
Sbjct: 121 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 180
Query: 414 TEA-KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
             + K+E+ + V  +L   +  R+  S   NEHSSRSH +  I +   N   G  +   L
Sbjct: 181 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL 240
Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLTH 529
            LVDLAGSER+  ++V G+RL+E QNI +SLS LGDVI +L        HIP+RNSKLT+
Sbjct: 241 NLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 300
Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
           LLQ SL GDSKTLMF+ ISPS   + ETL+SL FAS+V    L
Sbjct: 301 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343

>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365

Iteration: 1
 Score =  216 bits (550), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 133/324 (41%), Positives = 191/324 (58%), Gaps = 23/324 (7%)
Query: 269 IRVFCRCRPLSKEEASAGHAMVVDF-SAAKDGELGI-----LTVDVFAD----------- 311
           I+V CR RPL+  E  AG   VV F +  ++  + I     L   VF             
Sbjct: 13  IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNASQEKVYNEA 72
Query: 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT---QQNRGVNYRTLELLFKIAEERKET 368
           A  +VT VL GYN  IFAYGQT +GKT TMEG       +G+  R +  +F      +  
Sbjct: 73  AKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVN 132
Query: 369 FTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVL 428
             + I VS  E+Y ++IRDLLD S  +  L + +      +V G TE  + + ++V++V+
Sbjct: 133 LEFHIKVSYYEIYMDKIRDLLDVSKVN--LSVHEDKNRVPYVKGATERFVSSPEDVFEVI 190
Query: 429 HIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEV 488
             G + R +   N+NEHSSRSH +  I+VK +NL N +    KL+LVDLAGSE+++KT  
Sbjct: 191 EEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGA 250
Query: 489 QGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQI 547
           +G  L EA+NIN+SLSALG+VIS+LA     HIPYR+SKLT +LQ+SLGG+++T + +  
Sbjct: 251 EGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICC 310
Query: 548 SPSEQDLGETLSSLNFASRVRGVE 571
           SP+  +  ET S+L+F  R + V+
Sbjct: 311 SPASFNESETKSTLDFGRRAKTVK 334

>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score =  216 bits (550), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 142/343 (41%), Positives = 186/343 (54%), Gaps = 39/343 (11%)
Query: 267 GNIRVFCRCRPLSK---------------EEASAGHAM----------VVDFSAAKDGEL 301
           GNIRV+CR RP  K               ++ S   +M          V +F   K  + 
Sbjct: 3   GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 62
Query: 302 GILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK- 360
               VDVF +   LV S LDGYNVCIFAYGQTG+GKTFTM       G+   T+  +F  
Sbjct: 63  QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 120
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASEGFHHVPGL 413
           I + + + + Y ++   +E+YNE I DLL +   +K       K EIR   E        
Sbjct: 121 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 180
Query: 414 TEA-KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
             + K+E+ + V  +L   +  R+  S   NEHSS SH +  I +   N   G  +   L
Sbjct: 181 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTL 240
Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLTH 529
            LVDLAGSER+  ++V G+RL+E QNIN+SLS LGDVI +L        HIP+RNSKLT+
Sbjct: 241 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 300
Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
           LLQ SL GDSKTLMF+ ISPS   + ETL+SL FAS+V    L
Sbjct: 301 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343

>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383

Iteration: 1
 Score =  215 bits (548), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 137/339 (40%), Positives = 187/339 (55%), Gaps = 32/339 (9%)
Query: 261 STIQVLGNIRVFCRCR-PLSKEE-----------ASAGHAMVVDFSAAKDGELGILTV-- 306
           + + + GNIRVFCR R PL  EE            S      +D  A       I +   
Sbjct: 50  TVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQ 109
Query: 307 ---------DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEL 357
                    D+F   SPL+ S LDGYN+CIFAYGQ+G+GKT+TM+G  ++ GV  RT++L
Sbjct: 110 VFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDL 169
Query: 358 LF-KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLT 414
           LF  I   R   + Y I  + LE+YNE + DLL  S   K +EIR A    +  +V  +T
Sbjct: 170 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL--SNEQKDMEIRMAKNNKNDIYVSNIT 227
Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWL 474
           E  + +   +  ++H     RA  S   NE SSRSH +  + +  ++    E +   + L
Sbjct: 228 EETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINL 287
Query: 475 VDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS 534
           VDLAGSE   KT     R+ E +NINRSLS L +VI +L  K  HIPYRNSKLTHLL  S
Sbjct: 288 VDLAGSES-PKTST---RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS 343
Query: 535 LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELS 573
           LGG+SKTLMF+ +SP +    E++ SL FA+ V   +++
Sbjct: 344 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 382

>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715

Iteration: 1
 Score =  213 bits (542), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 138/344 (40%), Positives = 198/344 (57%), Gaps = 40/344 (11%)
Query: 267 GNIRVFCRCRPLSKEEASAGHAM---VVDFSAAKD------GELGI------------LT 305
           GNIRVFCR R +S   +S+  +    ++ + A +D       EL I              
Sbjct: 374 GNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFL 433
Query: 306 VD-----------VFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRT 354
            D           VF + S L+   LDG NVC+FAYGQTG+GKTFTM  +    G+   +
Sbjct: 434 FDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGMIPLS 491
Query: 355 LELLFKIAEERKET-FTYSISVSALEVYNEQIRDLLDT--SPTSKKLEIRQAS-EGFHHV 410
           L+ +F   EE KE  ++Y++    +E+YNE I DLL+    P +K  EI+     G   V
Sbjct: 492 LKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTK-YEIKHDDIAGKTTV 550
Query: 411 PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKS 470
             ++   I++ ++   +L+  +  R+  +   N+HSSRSH +  I ++  N +  E +  
Sbjct: 551 TNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYG 610
Query: 471 KLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG-HIPYRNSKLTH 529
            L L+DLAGSERL  +  +G+RLKE Q IN+SLS LGDVI SL  K G H+PYRNSKLT+
Sbjct: 611 TLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTY 670
Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELS 573
           LL+ SLGG+SKTLMF+ ISP  +DL ET++SL FA++V    ++
Sbjct: 671 LLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRIN 714

>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354

Iteration: 1
 Score =  209 bits (531), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 115/266 (43%), Positives = 169/266 (63%), Gaps = 13/266 (4%)
Query: 315 LVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLF-KIAEERKETFTYSI 373
           ++ +  DGYN CIFAYGQTG+GK++TM GT    G+  R    LF +  +E  E  ++ +
Sbjct: 84  ILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKV 143
Query: 374 SVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSN 433
            VS +E+YNE++RDLLD   + + L++R+ S    +V GL++  + + K++  ++  G+ 
Sbjct: 144 EVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNK 203
Query: 434 ARAVGSNNVNEHSSRSHCMLCISV-----KAKNLINGECTKSKLWLVDLAGSERLAKTEV 488
           +R V + N+NE SSRSH +  I++       K+  +GE    KL LVDLAGSER  KT  
Sbjct: 204 SRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKV-GKLSLVDLAGSERATKTGA 262
Query: 489 QGERLKEAQNINRSLSALGDVISSLATKSG------HIPYRNSKLTHLLQDSLGGDSKTL 542
            G+RLKE  NIN+SL+ LG VIS+LA +S        +PYR+S LT LL+DSLGG+SKT 
Sbjct: 263 AGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTA 322
Query: 543 MFLQISPSEQDLGETLSSLNFASRVR 568
           M   +SP+  +  ETLS+L +A R +
Sbjct: 323 MVATVSPAADNYDETLSTLRYADRAK 348

>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score =  204 bits (520), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 189/333 (56%), Gaps = 34/333 (10%)
Query: 269 IRVFCRCRPLSKEEASAGHAMVVDF-------SAAKDGELG---ILTVDVFADA------ 312
           +RV  R RPL  +E   GH   +         +  +D   G   +L  D   +A      
Sbjct: 13  VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACV 72
Query: 313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTM-EGT-----QQNRGVNYRTLELLFKIAEERK 366
            PL+ +  +G+N  +FAYGQTG+GKT+TM E +     +  +G+  R +   FK+ +E  
Sbjct: 73  QPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDE-N 131
Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWD 426
           +     + VS LEVY E+ RDLL+    S+ +++R+   G   + G+ E  +E + EV  
Sbjct: 132 DLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLS 191
Query: 427 VLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKN--------LINGECTKSKLWLVDLA 478
           +L +G+ AR  G+ ++N  SSRSH +  ++++ +            G+   SK   VDLA
Sbjct: 192 LLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLA 251
Query: 479 GSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT---KSGHIPYRNSKLTHLLQDSL 535
           GSER+ KT   GERLKE+  IN SL ALG+VIS+L     +  HIPYR+SK+T +L+DSL
Sbjct: 252 GSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSL 311
Query: 536 GGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           GG++KT+M   +SPS  D  ETL++LN+ASR +
Sbjct: 312 GGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344

>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350

Iteration: 1
 Score =  199 bits (505), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 129/338 (38%), Positives = 183/338 (54%), Gaps = 34/338 (10%)
Query: 268 NIRVFCRCRPLSKEEA-----------SAGHAMVVDF-----SAAKDGELG-ILTVDVFA 310
           NI+V  RCRPL+  E             A   ++VD      SA +  ++    T D   
Sbjct: 5   NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 311 DAS------------PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELL 358
           D +            PL+ +VL+G+N  IFAYGQTG GKT+TM G ++  G    + + L
Sbjct: 65  DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHL 124
Query: 359 FKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKI 418
           F           + +  S LE+YNE+IRDL+  +    KL +++      +V GL+  ++
Sbjct: 125 FDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN---TKLPLKEDKTRGIYVDGLSMHRV 181
Query: 419 ENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI-NGECTK-SKLWLVD 476
               E+  ++  G   R V +  +N+ SSRSH +  + ++   +I N E  +  KL LVD
Sbjct: 182 TTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVD 241
Query: 477 LAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLG 536
           LAGSER +KT   GE L E   IN SLSALG VIS L   + HIPYR+SKLT LLQDSLG
Sbjct: 242 LAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLG 301
Query: 537 GDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSP 574
           G+SKTLM   ISP+  +  ET+S+L +A R + ++  P
Sbjct: 302 GNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKP 339

>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score =  197 bits (501), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 187/333 (56%), Gaps = 34/333 (10%)
Query: 269 IRVFCRCRPLSKEEASAGHAMVVDF-------SAAKDGELG---ILTVDVFADA------ 312
           +RV  R RPL  +E   GH   +         +  +D   G   +L  D   +A      
Sbjct: 13  VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACV 72
Query: 313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTM-EGT-----QQNRGVNYRTLELLFKIAEERK 366
            PL+ +  +G+N  +FAYGQTG+GKT+TM E +     +  +G+  R +   FK+ +E  
Sbjct: 73  QPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDE-N 131
Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWD 426
           +     + VS LEVY E+ RDLL+    S+ +++R+   G   + G+ E  +E + EV  
Sbjct: 132 DLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLS 191
Query: 427 VLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKN--------LINGECTKSKLWLVDLA 478
           +L +G+ AR  G+ ++N  SSRSH +  +++K +            G+   SK   VDLA
Sbjct: 192 LLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFHFVDLA 251
Query: 479 GSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT---KSGHIPYRNSKLTHLLQDSL 535
           GSER+ KT   GE  KE+  IN SL ALG+VIS+L     +  +IPYR+SK+T +L+DSL
Sbjct: 252 GSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKITRILKDSL 311
Query: 536 GGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           GG++KT+M   +SPS  D  ETL++LN+ASR +
Sbjct: 312 GGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344

>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359

Iteration: 1
 Score =  197 bits (500), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
           NI+V  RCRP +  E  ++ H++V                 D S+ K    D   G  T 
Sbjct: 9   NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 68
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
            +DV+     P++  V+ GYN  IFAYGQTGTGKTFTMEG +              G+  
Sbjct: 69  QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
           RTL  +F K+ +   E   +S+ VS LE+YNE++ DLL+ +S  S++L++         V
Sbjct: 129 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 185
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
              GL E  + N  EV+ +L  G+  R   +  +N +SSRSH +  +++  K   I+GE 
Sbjct: 186 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 245
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
                KL LVDLAGSE + ++    +R +EA NIN+SL  LG VI++L  ++ H+PYR S
Sbjct: 246 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 305
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
           KLT +LQDSLGG ++T +   ISP+  +L ETLS+L +A R + +   P   Q
Sbjct: 306 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358

>pdb|4A1Z|A Chain A, Eg5-1 Length = 368

Iteration: 1
 Score =  197 bits (500), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
           NI+V  RCRP +  E  ++ H++V                 D S+ K    D   G  T 
Sbjct: 18  NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
            +DV+     P++  V+ GYN  IFAYGQTGTGKTFTMEG +              G+  
Sbjct: 78  QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
           RTL  +F K+ +   E   +S+ VS LE+YNE++ DLL+ +S  S++L++         V
Sbjct: 138 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
              GL E  + N  EV+ +L  G+  R   +  +N +SSRSH +  +++  K   I+GE 
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
                KL LVDLAGSE + ++    +R +EA NIN+SL  LG VI++L  ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
           KLT +LQDSLGG ++T +   ISP+  +L ETLS+L +A R + +   P   Q
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|4A28|A Chain A, Eg5-2 Length = 368

Iteration: 1
 Score =  197 bits (500), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
           NI+V  RCRP +  E  ++ H++V                 D S+ K    D   G  T 
Sbjct: 18  NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
            +DV+     P++  V+ GYN  IFAYGQTGTGKTFTMEG +              G+  
Sbjct: 78  QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
           RTL  +F K+ +   E   +S+ VS LE+YNE++ DLL+ +S  S++L++         V
Sbjct: 138 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
              GL E  + N  EV+ +L  G+  R   +  +N +SSRSH +  +++  K   I+GE 
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
                KL LVDLAGSE + ++    +R +EA NIN+SL  LG VI++L  ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
           KLT +LQDSLGG ++T +   ISP+  +L ETLS+L +A R + +   P   Q
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443

Iteration: 1
 Score =  197 bits (500), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/293 (41%), Positives = 172/293 (58%), Gaps = 34/293 (11%)
Query: 320 LDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLF-KIAEERKET--FTYSISVS 376
            +GY+ CIFAYGQTG+GK++TM GT    G+  RT E LF +IA  + ET   +Y++ VS
Sbjct: 133 FEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVS 192
Query: 377 ALEVYNEQIRDLLDTSPTSKK---LEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSN 433
             EVYNE +RDLL     +K    L++R++     +V  LTE  +  ++E+   + IG  
Sbjct: 193 YFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDG 252
Query: 434 ARAVGSNNVNEHSSRSHCMLCISVKA--KNLINGECTK--SKLWLVDLAGSERLAKTEVQ 489
           +R V S  +N+ SSRSH +  I +K    +L   + T+  S++ LVDLAGSER   TE  
Sbjct: 253 SRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEAT 312
Query: 490 GERLKEAQNINRSLSALGDVISSLA------------TKSGH----------IPYRNSKL 527
           G+RL+E  NIN+SL+ LG VI++LA             KSG           +PYR+S L
Sbjct: 313 GQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVL 372
Query: 528 THLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQID 580
           T LL+DSLGG+SKT M   ISP++ D  ETLS+L +A + + +       Q+D
Sbjct: 373 TWLLKDSLGGNSKTAMIACISPTDYD--ETLSTLRYADQAKRIRTRAVVNQVD 423

>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369

Iteration: 1
 Score =  197 bits (500), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
           NI+V  RCRP +  E  ++ H++V                 D S+ K    D   G  T 
Sbjct: 18  NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
            +DV+     P++  V+ GYN  IFAYGQTGTGKTFTMEG +              G+  
Sbjct: 78  QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
           RTL  +F K+ +   E   +S+ VS LE+YNE++ DLL+ +S  S++L++         V
Sbjct: 138 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
              GL E  + N  EV+ +L  G+  R   +  +N +SSRSH +  +++  K   I+GE 
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
                KL LVDLAGSE + ++    +R +EA NIN+SL  LG VI++L  ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
           KLT +LQDSLGG ++T +   ISP+  +L ETLS+L +A R + +   P   Q
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368

Iteration: 1
 Score =  196 bits (499), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
           NI+V  RCRP +  E  ++ H++V                 D S+ K    D   G  T 
Sbjct: 18  NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
            +DV+     P++  V+ GYN  IFAYGQTGTGKTFTMEG +              G+  
Sbjct: 78  QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
           RTL  +F K+ +   E   +S+ VS LE+YNE++ DLL+ +S  S++L++         V
Sbjct: 138 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
              GL E  + N  EV+ +L  G+  R   +  +N +SSRSH +  +++  K   I+GE 
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
                KL LVDLAGSE + ++    +R +EA NIN+SL  LG VI++L  ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
           KLT +LQDSLGG ++T +   ISP+  +L ETLS+L +A R + +   P   Q
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370

Iteration: 1
 Score =  196 bits (499), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
           NI+V  RCRP +  E  ++ H++V                 D S+ K    D   G  T 
Sbjct: 20  NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
            +DV+     P++  V+ GYN  IFAYGQTGTGKTFTMEG +              G+  
Sbjct: 80  QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
           RTL  +F K+ +   E   +S+ VS LE+YNE++ DLL+ +S  S++L++         V
Sbjct: 140 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 196
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
              GL E  + N  EV+ +L  G+  R   +  +N +SSRSH +  +++  K   I+GE 
Sbjct: 197 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 256
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
                KL LVDLAGSE + ++    +R +EA NIN+SL  LG VI++L  ++ H+PYR S
Sbjct: 257 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 316
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
           KLT +LQDSLGG ++T +   ISP+  +L ETLS+L +A R + +   P   Q
Sbjct: 317 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369

>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367

Iteration: 1
 Score =  196 bits (499), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
           NI+V  RCRP +  E  ++ H++V                 D S+ K    D   G  T 
Sbjct: 17  NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
            +DV+     P++  V+ GYN  IFAYGQTGTGKTFTMEG +              G+  
Sbjct: 77  QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
           RTL  +F K+ +   E   +S+ VS LE+YNE++ DLL+ +S  S++L++         V
Sbjct: 137 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 193
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
              GL E  + N  EV+ +L  G+  R   +  +N +SSRSH +  +++  K   I+GE 
Sbjct: 194 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 253
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
                KL LVDLAGSE + ++    +R +EA NIN+SL  LG VI++L  ++ H+PYR S
Sbjct: 254 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 313
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
           KLT +LQDSLGG ++T +   ISP+  +L ETLS+L +A R + +   P   Q
Sbjct: 314 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366

>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348

Iteration: 1
 Score =  195 bits (496), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 194/349 (55%), Gaps = 45/349 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
           NI+V  RCRP +  E  ++ H++V                 D S+ K    D   G  T 
Sbjct: 3   NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 306 -VDVF-ADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
            +DV+ +   P++  V+ GYN  IFAYGQTGTGKTFTMEG +              G+  
Sbjct: 63  QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
           RTL  +F K+ +   E   +S+ VS LE+YNE++ DLL+ +S  S++L++         V
Sbjct: 123 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 179
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
              GL E  + N  EV+ +L  G+  R   +  +N +SSRSH +  +++  K   I+GE 
Sbjct: 180 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 239
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
                KL LVDLAGSE + ++    +R +EA NIN+SL  LG VI++L  ++ H+PYR S
Sbjct: 240 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 299
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSP 574
           KLT +LQDSLGG ++T +   ISP+  +L ETLS+L +A R + +   P
Sbjct: 300 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKP 348

>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373

Iteration: 1
 Score =  195 bits (496), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 132/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
           NI+V  R RP +  E  ++ H++V                 D S+ K    D   G  T 
Sbjct: 18  NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
            +DV+    +P++  V+ GYN  IFAYGQTGTGKTFTMEG +              G+  
Sbjct: 78  QIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIP 137
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
           RTL  +F K+ +   E   +S+ VS LE+YNE++ DLL+ +S  S++L++         V
Sbjct: 138 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
              GL E  + N  EV+ +L  G+  R   +  +N +SSRSH +  +++  K   I+GE 
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
                KL LVDLAGSE + ++    +R +EA NIN+SL  LG VI++L  ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
           KLT +LQDSLGG ++T +   ISP+  +L ETLS+L +A R + +   P   Q
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373

Iteration: 1
 Score =  192 bits (488), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 132/348 (37%), Positives = 186/348 (53%), Gaps = 39/348 (11%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAK------------------DGELGILT--VD 307
           NI+V+ R RPL+  E     A VVD    +                  D   G  +   D
Sbjct: 24  NIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCD 83
Query: 308 VFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ-----------QNRGVNYRTL 355
           V++   SPL+  VL+GYN  +FAYGQTGTGKT TM G +            + G+  R L
Sbjct: 84  VYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRAL 143
Query: 356 ELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLT 414
             LF   E R     Y++ +S LE+YNE++ DLL T  T+K ++      +G   + GL 
Sbjct: 144 SHLFD--ELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLE 201
Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE--CTKSK 471
           E  + +  +V+ +L  G   R   +  +N  SSRSH +  I V  + N I GE      K
Sbjct: 202 EIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGK 261
Query: 472 LWLVDLAGSERLAKT-EVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHL 530
           L LVDLAGSE ++K    +G R++E  NIN+SL  LG VI++L  ++ H+PYR SKLT L
Sbjct: 262 LNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRL 321
Query: 531 LQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
           LQ+SLGG +KT +   ISP  +D+ ETLS+L +A R + ++  P   Q
Sbjct: 322 LQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369

>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355

Iteration: 1
 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/263 (42%), Positives = 162/263 (61%), Gaps = 9/263 (3%)
Query: 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSI 373
           P++ S L+GYN  + AYG TG GKT TM G+    GV Y T+  L+K  +E KE    S 
Sbjct: 96  PILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICST 155
Query: 374 SVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSN 433
           +VS LEVYNEQIRDLL     S  L +R+ ++    V GLT  + ++ +E+  +L  G+ 
Sbjct: 156 AVSYLEVYNEQIRDLL---VNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNK 212
Query: 434 ARAVGSNNVNEHSSRSHCMLCISVKAKN---LINGECTKSKLWLVDLAGSERLAKTEVQG 490
            R     ++N  SSRSH +  I ++ ++    IN     +K+ L+DLAGSER + +  +G
Sbjct: 213 NRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKG 272
Query: 491 ERLKEAQNINRSLSALGDVISSLAT---KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQI 547
            R  E  NINRSL ALG+VI++LA    K+ HIPYRNSKLT LL+DSLGG+ +T+M   +
Sbjct: 273 TRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAV 332
Query: 548 SPSEQDLGETLSSLNFASRVRGV 570
           SPS     +T ++L +A+R + +
Sbjct: 333 SPSSVFYDDTYNTLKYANRAKDI 355

>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394

Iteration: 1
 Score =  184 bits (466), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/278 (39%), Positives = 168/278 (60%), Gaps = 26/278 (9%)
Query: 315 LVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQ--NRGVNYRTLELLF-KIAEERKETFTY 371
           ++    +GYNVCIFAYGQTG GK++TM G Q+   +G+  +  E LF +I +   +  +Y
Sbjct: 97  MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSY 156
Query: 372 SISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHI 430
           S+ VS +E+Y E++RDLL+  P +K  L +R+      +V  L++  + +  ++ D++  
Sbjct: 157 SVEVSYMEIYCERVRDLLN--PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDS 214
Query: 431 GSNARAVGSNNVNEHSSRSHCMLCISVKAK------NLINGECTKSKLWLVDLAGSERLA 484
           G+ AR V + N+NE SSRSH +  I    K      N+   +   SK+ LVDLAGSER  
Sbjct: 215 GNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV--SKISLVDLAGSERAD 272
Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLA------------TKSGHIPYRNSKLTHLLQ 532
            T  +G RLKE  NIN+SL+ LG VIS+LA             K+  IPYR+S LT LL+
Sbjct: 273 STGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 332
Query: 533 DSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV 570
           ++LGG+S+T M   +SP++ +  ETLS+L +A R + +
Sbjct: 333 ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370

>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367

Iteration: 1
 Score =  183 bits (465), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/278 (39%), Positives = 168/278 (60%), Gaps = 26/278 (9%)
Query: 315 LVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQ--NRGVNYRTLELLF-KIAEERKETFTY 371
           ++    +GYNVCIFAYGQTG GK++TM G Q+   +G+  +  E LF +I +   +  +Y
Sbjct: 81  MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSY 140
Query: 372 SISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHI 430
           S+ VS +E+Y E++RDLL+  P +K  L +R+      +V  L++  + +  ++ D++  
Sbjct: 141 SVEVSYMEIYCERVRDLLN--PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDS 198
Query: 431 GSNARAVGSNNVNEHSSRSHCMLCISVKAK------NLINGECTKSKLWLVDLAGSERLA 484
           G+ AR V + N+NE SSRSH +  I    K      N+   +   SK+ LVDLAGSER  
Sbjct: 199 GNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV--SKISLVDLAGSERAD 256
Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLA------------TKSGHIPYRNSKLTHLLQ 532
            T  +G RLKE  NIN+SL+ LG VIS+LA             K+  IPYR+S LT LL+
Sbjct: 257 STGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 316
Query: 533 DSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV 570
           ++LGG+S+T M   +SP++ +  ETLS+L +A R + +
Sbjct: 317 ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354

>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359

Iteration: 1
 Score =  183 bits (464), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/291 (40%), Positives = 169/291 (58%), Gaps = 14/291 (4%)
Query: 292 DFSAAKDGELGILTVDVFAD--ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQN-- 347
           D+S   DG L   + D+  +  A  +V+  LDGYN  I  YGQTG GKT+TM G  +N  
Sbjct: 71  DWSFKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYK 130
Query: 348 -RGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDT----SPTSKKLEIRQ 402
            RG+  R L+ +F++ EER  T   ++ VS LE+YNE + DLL T     P+   + I +
Sbjct: 131 HRGILPRALQQVFRMIEERP-THAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVE 189
Query: 403 ASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKA--K 460
             +G   + GL+       ++ + +L  G   R + S+ +N++SSRSHC+  I ++A  +
Sbjct: 190 NPQGVF-IKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSR 248
Query: 461 NLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-KSGH 519
            L   +   SK+ LVDLAGSERL K+  +G+ LKEA  IN+SLS L   I +L   K  H
Sbjct: 249 TLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDH 308
Query: 520 IPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV 570
           IP+R  KLTH L+DSLGG+   ++   I      L ETLSSL FASR++ V
Sbjct: 309 IPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359

>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366

Iteration: 1
 Score =  183 bits (464), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 111/278 (39%), Positives = 168/278 (60%), Gaps = 26/278 (9%)
Query: 315 LVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQ--NRGVNYRTLELLF-KIAEERKETFTY 371
           ++    +GYNVCIFAYGQTG GK++TM G Q+   +G+  +  E LF +I +   +  +Y
Sbjct: 81  MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSY 140
Query: 372 SISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHI 430
           S+ VS +E+Y E++RDLL+  P +K  L +R+      +V  L++  + +  ++ D++  
Sbjct: 141 SVEVSYMEIYCERVRDLLN--PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDS 198
Query: 431 GSNARAVGSNNVNEHSSRSHCMLCISVKAK------NLINGECTKSKLWLVDLAGSERLA 484
           G+ AR V + N+NE SSRSH +  I    K      N+   +   SK+ LVDLAGSER  
Sbjct: 199 GNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV--SKISLVDLAGSERAD 256
Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLA------------TKSGHIPYRNSKLTHLLQ 532
            T  +G RLKE  NIN+SL+ LG VIS+LA             K+  IPYR+S LT LL+
Sbjct: 257 STGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 316
Query: 533 DSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV 570
           ++LGG+S+T M   +SP++ +  ETLS+L +A R + +
Sbjct: 317 ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354

>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366

Iteration: 1
 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/278 (39%), Positives = 167/278 (60%), Gaps = 26/278 (9%)
Query: 315 LVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQ--NRGVNYRTLELLF-KIAEERKETFTY 371
           ++    +GYNVCIFAYGQTG GK++TM G Q+   +G+  +  E LF +I +   +  +Y
Sbjct: 81  MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSY 140
Query: 372 SISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHI 430
           S+ VS +E+Y E++RDLL+  P +K  L +R+      +V  L++  + +  ++ D++  
Sbjct: 141 SVEVSYMEIYCERVRDLLN--PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDS 198
Query: 431 GSNARAVGSNNVNEHSSRSHCMLCISVKAK------NLINGECTKSKLWLVDLAGSERLA 484
           G+  R V + N+NE SSRSH +  I    K      N+   +   SK+ LVDLAGSER  
Sbjct: 199 GNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV--SKISLVDLAGSERAD 256
Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLA------------TKSGHIPYRNSKLTHLLQ 532
            T  +G RLKE  NIN+SL+ LG VIS+LA             K+  IPYR+S LT LL+
Sbjct: 257 STGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 316
Query: 533 DSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV 570
           ++LGG+S+T M   +SP++ +  ETLS+L +A R + +
Sbjct: 317 ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354

>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388

Iteration: 1
 Score =  176 bits (445), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 156/269 (57%), Gaps = 7/269 (2%)
Query: 307 DVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER 365
           D++A +  P++  +L+G N  + AYG TG GKT TM G+ +  GV  R L  L ++  E 
Sbjct: 81  DIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREE 140
Query: 366 K---ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIK 422
                 +  S+++S LE+Y E++ DLLD  P S  L IR+   G   +PGL++  I +  
Sbjct: 141 GAEGRPWALSVTMSYLEIYQEKVLDLLD--PASGDLVIREDCRGNILIPGLSQKPISSFA 198
Query: 423 EVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGECTKSKLWLVDLAGSE 481
           +        S  R VG+  +N+ SSRSH +L + V  +  L      + KL+L+DLAGSE
Sbjct: 199 DFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSE 258
Query: 482 RLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKT 541
              +T  +G RLKE+  IN SL  LG V+ +L      +PYR+SKLT LLQDSLGG + +
Sbjct: 259 DNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHS 318
Query: 542 LMFLQISPSEQDLGETLSSLNFASRVRGV 570
           ++   I+P  +   +T+S+LNFA+R + V
Sbjct: 319 ILIANIAPERRFYLDTVSALNFAARSKEV 347

>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349

Iteration: 1
 Score =  172 bits (436), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 125/344 (36%), Positives = 181/344 (52%), Gaps = 29/344 (8%)
Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK------DGELGI----------LTVDVFA 310
           G + V  R RPL+  E S G    V +          DG               T +V+ 
Sbjct: 4   GAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYE 63
Query: 311 D-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLF-KIAEERKET 368
           + A+P++ S + GYN  IFAYGQT +GKT+TM G++ + GV  R +  +F KI +     
Sbjct: 64  EIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDRE 123
Query: 369 FTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVL 428
           F   + VS +E+YNE I DLL  +   K L IR+      +V  LTE  +   +     +
Sbjct: 124 FL--LRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWI 181
Query: 429 HIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-----NLINGECTKSKLWLVDLAGSERL 483
             G  +R  G   +N+ SSRSH +  + ++++     +   G    S L LVDLAGSER 
Sbjct: 182 TKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERA 241
Query: 484 AKTEVQGERLKEAQNINRSLSALGDVISSLATK--SGHIPYRNSKLTHLLQDSLGGDSKT 541
           A+T   G RLKE  NINRSL  LG VI  L+     G I YR+SKLT +LQ+SLGG++KT
Sbjct: 242 AQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKT 301
Query: 542 LMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQ 585
            +   I+P   D  ETL++L FAS  + ++ +P   ++   +L+
Sbjct: 302 RIICTITPVSFD--ETLTALQFASTAKYMKNTPYVNEVSTDELE 343

>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387

Iteration: 1
 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/276 (36%), Positives = 143/276 (51%), Gaps = 27/276 (9%)
Query: 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNY---------RTLELLFKIA 362
           A PLV ++ +G     FAYGQTG+GKT TM G    +  N          R + LL    
Sbjct: 123 ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQP 182
Query: 363 EERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVP--GLTEAKIEN 420
             RK      + V+  E+YN ++ DLL+     KK ++R   +G   V   GL E  + +
Sbjct: 183 CYRK--LGLEVYVTFFEIYNGKLFDLLN-----KKAKLRVLEDGKQQVQVVGLQEHLVNS 235
Query: 421 IKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGS 480
             +V  ++ +GS  R  G    N +SSRSH    I ++AK  ++G     K  LVDLAG+
Sbjct: 236 ADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHG-----KFSLVDLAGN 290
Query: 481 ERLAKTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS-LGGD 538
           ER A T     + + E   IN+SL AL + I +L     H P+R SKLT +L+DS +G +
Sbjct: 291 ERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGEN 350
Query: 539 SKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSP 574
           S+T M   ISP       TL++L +A RV+  ELSP
Sbjct: 351 SRTCMIATISPGISSCEYTLNTLRYADRVK--ELSP 384

>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410

Iteration: 1
 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/266 (35%), Positives = 138/266 (51%), Gaps = 17/266 (6%)
Query: 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTM----EGTQQN--RGVNYRTLELLFKIAEE- 364
           A PLV ++ +G     FAYGQTG+GKT TM     G  QN  +G+       +F +  + 
Sbjct: 143 ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQP 202
Query: 365 RKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEV 424
           R       + V+  E+YN ++ DLL+      KL + + S     V GL E  +    +V
Sbjct: 203 RYRNLNLEVYVTFFEIYNGKVFDLLNKKA---KLRVLEDSRQQVQVVGLQEYLVTCADDV 259
Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
             ++++GS  R  G    N +SSRSH    I ++ K  ++G     K  LVDLAG+ER A
Sbjct: 260 IKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHG-----KFSLVDLAGNERGA 314
Query: 485 KTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS-LGGDSKTL 542
            T     + + E   IN+SL AL + I +L     H P+R SKLT +L+DS +G +S+T 
Sbjct: 315 DTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTC 374
Query: 543 MFLQISPSEQDLGETLSSLNFASRVR 568
           M   ISP       TL++L +A RV+
Sbjct: 375 MIAMISPGISSCEYTLNTLRYADRVK 400

>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331

Iteration: 1
 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 141/271 (52%), Gaps = 19/271 (7%)
Query: 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTM----EGTQQN--RGVNYRTLELLFKIAEE- 364
           A PLV ++ +G     FAYGQTG+GKT TM     G  QN  +G+       +F +  + 
Sbjct: 71  ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQP 130
Query: 365 RKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEV 424
           R       + V+  E+YN ++ DLL+      KL + + S     V GL E  +    +V
Sbjct: 131 RYRNLNLEVYVTFFEIYNGKVFDLLNKKA---KLRVLEDSRQQVQVVGLQEYLVTCADDV 187
Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
             ++++GS  R  G    N +SSRSH    I ++ K  ++G     K  LVDLAG+ER A
Sbjct: 188 IKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHG-----KFSLVDLAGNERGA 242
Query: 485 KTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS-LGGDSKTL 542
            T     + + E   IN+SL AL + I +L     H P+R SKLT +L+DS +G +S+T 
Sbjct: 243 DTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTC 302
Query: 543 MFLQISPSEQDLGETLSSLNFASRVRGVELS 573
           M   ISP       TL++L +A RV+  ELS
Sbjct: 303 MIAMISPGISSCEYTLNTLRYADRVK--ELS 331

>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344

Iteration: 1
 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/267 (34%), Positives = 140/267 (52%), Gaps = 22/267 (8%)
Query: 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ------QNRGVNYRTLELLFKIAEERKE 367
           PLV  +L+G+     AYGQTGTGK+++M  T       ++ G+  R L  +F+    R+E
Sbjct: 85  PLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQE 144
Query: 368 TFTYSISVSA--LEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVW 425
               +I V A  +E+YNE+  DLL ++P    +  R            T   + +  ++ 
Sbjct: 145 NNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQR--------CTCLPLHSQADLH 196
Query: 426 DVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAK 485
            +L +G+  R V   N+N +SSRSH ++ I VK+K         S++ +VDLAGSE + +
Sbjct: 197 HILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT------HHSRMNIVDLAGSEGVRR 250
Query: 486 TEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFL 545
           T  +G   +E  NIN  L ++  V+ S+A     IPYR+S LT +LQ SL   S      
Sbjct: 251 TGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLA 310
Query: 546 QISPSEQDLGETLSSLNFASRVRGVEL 572
            ISP + DL ETLS+L F +  +   L
Sbjct: 311 CISPHQCDLSETLSTLRFGTSAKAAAL 337

>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420

Iteration: 1
 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 144/270 (53%), Gaps = 25/270 (9%)
Query: 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR---------GVNYRTLELLFKIA 362
           A PLV ++ +      FAYGQTG+GKT TM G    +          +  R + L+ K  
Sbjct: 161 ARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKP 220
Query: 363 EERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVP--GLTEAKIEN 420
             +K      +  +  E+Y+ ++ DLL+     +K ++R   +G   V   GL E +++ 
Sbjct: 221 NYKK--LELQVYATFFEIYSGKVFDLLN-----RKTKLRVLEDGKQQVQVVGLQEREVKC 273
Query: 421 IKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGS 480
           +++V  ++ IG++ R  G  + N HSSRSH +  I ++ K  ++G     K  L+DLAG+
Sbjct: 274 VEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-----KFSLIDLAGN 328
Query: 481 ERLAKTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS-LGGD 538
           ER A T     + + E   IN+SL AL + I +L     H P+R SKLT +L+DS +G +
Sbjct: 329 ERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGEN 388
Query: 539 SKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           S+T M   ISP       TL++L +A+RV+
Sbjct: 389 SRTCMIATISPGMASCENTLNTLRYANRVK 418

>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344

Iteration: 1
 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/267 (34%), Positives = 141/267 (52%), Gaps = 22/267 (8%)
Query: 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ------QNRGVNYRTLELLFKIAEERKE 367
           PLV  +L+G+     AYGQTGTGK+++M  T       ++ G+  R L  +F+    R+E
Sbjct: 85  PLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQE 144
Query: 368 TFTYSISVSA--LEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVW 425
               +I V A  +E+YNE+  DLL ++P    +  R            T   + +  ++ 
Sbjct: 145 NNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQR--------CTCLPLHSQADLH 196
Query: 426 DVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAK 485
            +L +G+  R V   N+N +SSRSH ++ I VK+K         S++ +VDLAGSE + +
Sbjct: 197 HILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT------HHSRMNIVDLAGSEGVRR 250
Query: 486 TEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFL 545
           T  +G   +E  NIN  L ++  V+ S+A     IPYR+S LT +LQ SL   S      
Sbjct: 251 TGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLA 310
Query: 546 QISPSEQDLGETLSSLNFASRVRGVEL 572
            ISP + DL ETLS+L F +  + + L
Sbjct: 311 CISPHQCDLSETLSTLRFGTSAKKLRL 337

>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238

Iteration: 1
 Score =  133 bits (334), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 120/234 (51%), Gaps = 20/234 (8%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVDVFADASP------------- 314
           +I+V CR RPL++ E   G   +  F   +   +G     VF    P             
Sbjct: 7   SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKPYVFDRVLPPNTTQEQVYNACA 66
Query: 315 --LVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TQQNRGVNYRTLELLFKIAEERKETF 369
             +V  VL+GYN  IFAYGQT +GKT TMEG     Q  G+  R    +F       E  
Sbjct: 67  KQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDENL 126
Query: 370 TYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLH 429
            + I VS  E+Y ++IRDLLD S T+  L + +      +V G TE  + + +EV DV+ 
Sbjct: 127 EFHIKVSYFEIYLDKIRDLLDVSKTN--LAVHEDKNRVPYVKGCTERFVSSPEEVMDVID 184
Query: 430 IGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERL 483
            G   R V   N+NEHSSRSH +  I++K +N+   +    KL+LVDLAGSE++
Sbjct: 185 EGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKV 238

>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360

Iteration: 1
 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 143/275 (52%), Gaps = 17/275 (6%)
Query: 305 TVDVFA----DASPLVTSVLDGYNVC-IFAYGQTGTGKTFTMEGTQ-----QNRGVNYRT 354
           TVD F        PL+  + +   VC  FAYGQTG+GKT+TM G+Q        G+    
Sbjct: 61  TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYA 120
Query: 355 LELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLT 414
              +F       +  T  I +S  E+Y  ++ DLL        LE  +       V  L 
Sbjct: 121 AGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEV---VVKDLK 177
Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWL 474
             ++   +E+   +  G   R +G N+ N+ SSRSH +L I +K    IN   +  K+  
Sbjct: 178 ILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD---INKNTSLGKIAF 234
Query: 475 VDLAGSERLAKTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQD 533
           +DLAGSER A T  Q ++ + +  NINRSL AL + I ++ +   HIP+R+S+LT +L+D
Sbjct: 235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRD 294
Query: 534 SLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
              G SK++M   ISP+     +TL++L ++SRV+
Sbjct: 295 IFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329

>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 58/78 (74%), Gaps = 3/78 (3%)
Query: 496 AQNINRSLSALGDVISSLA--TKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQD 553
           A+NIN+SLSALG+VIS+LA  TK+ H+PYR+SK+T +LQDSL G+ +T + +  SPS  +
Sbjct: 1   AKNINKSLSALGNVISALAEGTKT-HVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFN 59
Query: 554 LGETLSSLNFASRVRGVE 571
             ET S+L F  R + ++
Sbjct: 60  EAETKSTLMFGQRAKTIK 77

>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 500 NRSLSALGDVISSLA--TKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGET 557
           N+SLSALG+VIS+LA  TK+ H+PYR+SK+T +LQDSLGG+ +T + +  SPS  +  ET
Sbjct: 1   NKSLSALGNVISALAEGTKT-HVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAET 59
Query: 558 LSSLNFASRVRGVE 571
            S+L F  R + ++
Sbjct: 60  KSTLMFGQRAKTIK 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	860
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	1e-178
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	1e-175
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	1e-169
3u06_A	412	Protein claret segregational; motor domain, stalk	1e-168
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	1e-167
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	1e-166
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	1e-161
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	1e-148
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	1e-131
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	1e-127
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	1e-127
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	1e-124
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	1e-122
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	1e-122
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	1e-118
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	1e-117
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	1e-117
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	1e-117
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	1e-116
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	1e-116
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	1e-115
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	1e-115
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	1e-110
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	1e-108
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	1e-107
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	1e-105
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	2e-31
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	9e-31
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	1e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-04
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	1e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	8e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-04
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	4e-05
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	6e-05
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	3e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	5e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	5e-04
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	7e-04

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score =  516 bits (1332), Expect = e-178
 Identities = 143/367 (38%), Positives = 217/367 (59%), Gaps = 26/367 (7%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILT--------------------V 306
           G IRV+CR RPL ++E  A     +      +  +  L                      
Sbjct: 5   GKIRVYCRLRPLCEKEIIAKERNAIRSV--DEFTVEHLWKDDKAKQHMYDRVFDGNATQD 62

Query: 307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
           DVF D   LV S +DGYNVCIFAYGQTG+GKTFT+ G   N G+  R +  LF+I ++  
Sbjct: 63  DVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDS 122

Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLTEAKIENIKEVW 425
             F++S+    +E+Y + + DLL      + KL+I++ S+G   V  +T   I   +E+ 
Sbjct: 123 NKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELK 182

Query: 426 DVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAK 485
            ++  GS  R      +NE SSRSH ++ + +++ NL      + KL  VDLAGSER+ K
Sbjct: 183 TIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKK 242

Query: 486 TEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFL 545
           +   G +LKEAQ+IN+SLSALGDVIS+L++ + HIPYRN KLT L+ DSLGG++KTLMF+
Sbjct: 243 SGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFV 302

Query: 546 QISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSK--DD 603
            ISP+E +L ET +SL +ASRVR +   P++      ++ ++K ++   K++ G K  D+
Sbjct: 303 NISPAESNLDETHNSLTYASRVRSIVNDPSKNV-SSKEVARLKKLVSYWKEQAGRKGDDE 361

Query: 604 VIQKLEE 610
            ++++++
Sbjct: 362 ELEEIQD 368

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score =  508 bits (1311), Expect = e-175
 Identities = 162/328 (49%), Positives = 213/328 (64%), Gaps = 23/328 (7%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILT--------------------V 306
           GNIRV  R RP++KE+     A       A D  +  L                      
Sbjct: 4   GNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQ 63

Query: 307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
           DVF +   LVTS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF   +E+ 
Sbjct: 64  DVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKA 123

Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENIKEV 424
             + Y+I+VSA E+YNE +RDLL   P  +KLEIR   +G    +VPGLTE +++++ ++
Sbjct: 124 SDWEYTITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDI 182

Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
             V   G   R     N+NEHSSRSH +L ++V+  +   G  T  KL LVDLAGSER+ 
Sbjct: 183 NKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 242

Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
           K+  +G RL+EAQ+IN+SLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSKTLM 
Sbjct: 243 KSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 302

Query: 545 LQISPSEQDLGETLSSLNFASRVRGVEL 572
           +Q+SP E++  ETL SL FA RVR VEL
Sbjct: 303 VQVSPVEKNTSETLYSLKFAERVRSVEL 330

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score =  496 bits (1278), Expect = e-169
 Identities = 148/402 (36%), Positives = 209/402 (51%), Gaps = 51/402 (12%)

Query: 224 AMNELERKILIWKEEHSQLAREAHECASSVPQLN-----------KMVSTIQVL-GNIRV 271
            +  L+ KI   KE+ + L  +  +    + +LN            + + +Q L GNIRV
Sbjct: 4   KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRV 63

Query: 272 FCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV------------------------- 306
           + R RP  K   ++  +++       +  +  + V                         
Sbjct: 64  YLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNV 123

Query: 307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK-IAEER 365
           DVF +   LV S LDGYNV IFAYGQTG+GKTFTM       G+   T+  +F  I + +
Sbjct: 124 DVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLK 181

Query: 366 KETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASE-GFHHVPGLTEAK 417
            + + Y ++   +E+YNE I DLL +   +K       K EIR   E     +  +T  K
Sbjct: 182 TKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVK 241

Query: 418 IENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDL 477
           +E+ + V  +L   +  R+  S   NEHSSRSH +  I +   N   G  +   L LVDL
Sbjct: 242 LESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDL 301

Query: 478 AGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA---TKSGHIPYRNSKLTHLLQDS 534
           AGSER+  ++V G+RL+E QNIN+SLSALGDVI +L    +   HIP+RNSKLT+LLQ S
Sbjct: 302 AGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYS 361

Query: 535 LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPAR 576
           L GDSKTLMF+ ISPS   + ETL+SL FAS+V    L   +
Sbjct: 362 LTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSRK 403

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score =  493 bits (1271), Expect = e-168
 Identities = 134/419 (31%), Positives = 196/419 (46%), Gaps = 60/419 (14%)

Query: 236 KEEHSQLAREAHECASSVPQLNKMVS-------------------------TIQVL-GNI 269
              H+ L+ E         +L +                            T+  L  NI
Sbjct: 2   GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61

Query: 270 RVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV----------------------- 306
           RVFCR RP  + E +               EL  +                         
Sbjct: 62  RVFCRIRPPLESEENRMCCTWTYHDE-STVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 120

Query: 307 -DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK-IAEE 364
            D+F   SPL+ S LDGYN+CIFAYGQTG+GKT+TM+G  ++ GV  RT++LLF  I   
Sbjct: 121 SDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGY 180

Query: 365 RKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEV 424
           R   + Y I  + LE+YNE + DLL       ++ + + ++   +V  +TE  + +   +
Sbjct: 181 RNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHL 240

Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
             ++H     RA  S   NE SSRSH +  + +  ++    E +   + LVDLAGSE   
Sbjct: 241 RHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPK 300

Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
                  R+ E +NINRSLS L +VI +L  K  HIPYRNSKLTHLL  SLGG+SKTLMF
Sbjct: 301 T----STRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMF 356

Query: 545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDD 603
           + +SP +    E++ SL FA+ V   +++ A++   ++      +    T+       D
Sbjct: 357 INVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNN----SVANSSTQSNNSGSFD 411

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score =  487 bits (1257), Expect = e-167
 Identities = 138/347 (39%), Positives = 188/347 (54%), Gaps = 39/347 (11%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV-------------------- 306
           GNIRV+CR RP  K   ++  +++       +  +  + V                    
Sbjct: 3   GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 62

Query: 307 -----DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK- 360
                DVF +   LV S LDGYNVCIFAYGQTG+GKTFTM       G+   T+  +F  
Sbjct: 63  QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNW 120

Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASE-GFHHVPG 412
           I + + + + Y ++   +E+YNE I DLL +   +K       K EIR   E     +  
Sbjct: 121 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 180

Query: 413 LTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
           +T  K+E+ + V  +L   +  R+  S   NEHSS SH +  I +   N   G  +   L
Sbjct: 181 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTL 240

Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA---TKSGHIPYRNSKLTH 529
            LVDLAGSER+  ++V G+RL+E QNIN+SLS LGDVI +L    +   HIP+RNSKLT+
Sbjct: 241 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 300

Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPAR 576
           LLQ SL GDSKTLMF+ ISPS   + ETL+SL FAS+V    L   +
Sbjct: 301 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSRK 347

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score =  486 bits (1253), Expect = e-166
 Identities = 136/346 (39%), Positives = 186/346 (53%), Gaps = 40/346 (11%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILT--------------------- 305
           GNIRV+CR RP    E      ++++      G   +                       
Sbjct: 5   GNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPS 64

Query: 306 ---VDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIA 362
               ++F +   LV S LDGYNVCIFAYGQTG+GKT+TM       G+   TL  +FK  
Sbjct: 65  HTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWT 122

Query: 363 EERKET-FTYSISVSALEVYNEQIRDLLDTSPT---------SKKLEIRQASEGF-HHVP 411
              KE  + Y +    +E+YNE I DLL    +         S+K +IR   E    ++ 
Sbjct: 123 ANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYIT 182

Query: 412 GLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK 471
            +T  K+ +  +V  +L   S  R+  +   NE SSRSH +  + +  +NL  GE ++ K
Sbjct: 183 NVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGK 242

Query: 472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLT 528
           L LVDLAGSER+  + V GERL+E QNIN+SLS LGDVI +L T      +IP+RNSKLT
Sbjct: 243 LNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLT 302

Query: 529 HLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSP 574
           +LLQ SL GDSKTLMF+ I P    + ETL+SL FAS+V   +++ 
Sbjct: 303 YLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score =  474 bits (1222), Expect = e-161
 Identities = 142/353 (40%), Positives = 185/353 (52%), Gaps = 51/353 (14%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV-------------------- 306
           GNIRVFCR RP+   E +    +++  S           +                    
Sbjct: 22  GNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPP 81

Query: 307 -----------------DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG----TQ 345
                            +VF + + LV S LDGY VCIFAYGQTG+GKTFTMEG      
Sbjct: 82  RHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDP 141

Query: 346 QNRGVNYRTLELLFKIAEERK-ETFTYSISVSALEVYNEQIRDLLDTSPT---SKKLEIR 401
           Q  G+  R L  LF +A+E   + +TYS   S +E+YNE +RDLL T        + EIR
Sbjct: 142 QLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIR 201

Query: 402 QASEGFH--HVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKA 459
           +A  G     V       +   KEV  +LH+    RAV     NE SSRSH +  + +  
Sbjct: 202 RAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISG 261

Query: 460 KNLINGECTKSKLWLVDLAGSERLAKTEVQG----ERLKEAQNINRSLSALGDVISSLAT 515
           ++   G    + L LVDLAGSERL      G    ERL+E Q IN SLS LG VI +L+ 
Sbjct: 262 EHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSN 321

Query: 516 KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           K  H+PYRNSKLT+LLQ+SLGG +K LMF+ ISP E+++ E+L+SL FAS+V 
Sbjct: 322 KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVN 374

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score =  438 bits (1130), Expect = e-148
 Identities = 129/325 (39%), Positives = 184/325 (56%), Gaps = 27/325 (8%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV-----------------DVF 309
            NI+V CR RPL++ E + G   +  F     GE  ++                    V+
Sbjct: 7   CNIKVMCRFRPLNESEVNRGDKYIAKF----QGEDTVVIASKPYAFDRVFQSSTSQEQVY 62

Query: 310 AD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ---QNRGVNYRTLELLFKIAEER 365
            D A  +V  VL+GYN  IFAYGQT +GKT TMEG     +  G+  R ++ +F      
Sbjct: 63  NDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSM 122

Query: 366 KETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVW 425
            E   + I VS  E+Y ++IRDLLD   +   L + +      +V G TE  + +  EV 
Sbjct: 123 DENLEFHIKVSYFEIYLDKIRDLLD--VSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 180

Query: 426 DVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAK 485
           D +  G + R V   N+NEHSSRSH +  I+VK +N    +    KL+LVDLAGSE+++K
Sbjct: 181 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSK 240

Query: 486 TEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFL 545
           T  +G  L EA+NIN+SLSALG+VIS+LA  S ++PYR+SK+T +LQDSLGG+ +T + +
Sbjct: 241 TGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300

Query: 546 QISPSEQDLGETLSSLNFASRVRGV 570
             SPS  +  ET S+L F  R + +
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTI 325

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score =  384 bits (988), Expect = e-127
 Identities = 134/358 (37%), Positives = 199/358 (55%), Gaps = 35/358 (9%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV-------------------- 306
            +I+V  R RP ++ E  +G   +V F     G                           
Sbjct: 6   NSIKVVARFRPQNRVEIESGGQPIVTF----QGPDTCTVDSKEAQGSFTFDRVFDMSCKQ 61

Query: 307 -DVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT----QQNRGVNYRTLELLFK 360
            D+F     P V  +L+GYN  +FAYGQTG GK++TM GT       RGV  R +E +F 
Sbjct: 62  SDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFT 121

Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIEN 420
                     Y++ VS +E+Y E+IRDLL   P +  L + +      +V GL E  + +
Sbjct: 122 SILSSAANIEYTVRVSYMEIYMERIRDLLA--PQNDNLPVHEEKNRGVYVKGLLEIYVSS 179

Query: 421 IKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGS 480
           ++EV++V+  G NARAV + N+N+ SSRSH +  I++  KN+  G     +L+LVDLAGS
Sbjct: 180 VQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGS 239

Query: 481 ERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDSLGGDS 539
           E++ KT   G+ L+EA+ IN+SLSALG VI++L   KS H+PYR+SKLT +LQ+SLGG+S
Sbjct: 240 EKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNS 299

Query: 540 KTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQE 597
           +T + +  SPS  +  ETLS+L F  R + ++        ++S  + +K ML K K +
Sbjct: 300 RTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNA-ELSPAE-LKQMLAKAKTQ 355

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score =  384 bits (989), Expect = e-127
 Identities = 132/356 (37%), Positives = 196/356 (55%), Gaps = 28/356 (7%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGIL----------------TVDVFAD 311
           +I+V CR RPL+  E  AG   VV F    +     +                   V+ +
Sbjct: 12  SIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNASQEKVYNE 71

Query: 312 -ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT---QQNRGVNYRTLELLFKIAEERKE 367
            A  +VT VL GYN  IFAYGQT +GKT TMEG       +G+  R +  +F      + 
Sbjct: 72  AAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEV 131

Query: 368 TFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDV 427
              + I VS  E+Y ++IRDLLD   +   L + +      +V G TE  + + ++V++V
Sbjct: 132 NLEFHIKVSYYEIYMDKIRDLLD--VSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEV 189

Query: 428 LHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTE 487
           +  G + R +   N+NEHSSRSH +  I+VK +NL N +    KL+LVDLAGSE+++KT 
Sbjct: 190 IEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTG 249

Query: 488 VQGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ 546
            +G  L EA+NIN+SLSALG+VIS+LA     HIPYR+SKLT +LQ+SLGG+++T + + 
Sbjct: 250 AEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVIC 309

Query: 547 ISPSEQDLGETLSSLNFASRVRGVELSP-----ARKQIDISKLQKVKMMLEKTKQE 597
            SP+  +  ET S+L+F  R + V+           +    + +K K    + K +
Sbjct: 310 CSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARLKGK 365

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score =  379 bits (975), Expect = e-124
 Identities = 111/325 (34%), Positives = 165/325 (50%), Gaps = 27/325 (8%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILT--------------------V 306
             +RV  R RP     A A     V    +   E+                         
Sbjct: 21  ARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQ 80

Query: 307 DVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER 365
           D++A    P++  +L+G N  + AYG TG GKT TM G+ +  GV  R L  L ++  E 
Sbjct: 81  DIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREE 140

Query: 366 K---ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIK 422
                 +  S+++S LE+Y E++ DLLD  P S  L IR+   G   +PGL++  I +  
Sbjct: 141 GAEGRPWALSVTMSYLEIYQEKVLDLLD--PASGDLVIREDCRGNILIPGLSQKPISSFA 198

Query: 423 EVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTK-SKLWLVDLAGSE 481
           +        S  R VG+  +N+ SSRSH +L + V  +  +     +  KL+L+DLAGSE
Sbjct: 199 DFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSE 258

Query: 482 RLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKT 541
              +T  +G RLKE+  IN SL  LG V+ +L      +PYR+SKLT LLQDSLGG + +
Sbjct: 259 DNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHS 318

Query: 542 LMFLQISPSEQDLGETLSSLNFASR 566
           ++   I+P  +   +T+S+LNFA+R
Sbjct: 319 ILIANIAPERRFYLDTVSALNFAAR 343

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score =  371 bits (955), Expect = e-122
 Identities = 123/338 (36%), Positives = 185/338 (54%), Gaps = 42/338 (12%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV-------------------DV 308
            +RV  R RPL  +E   GH   +      +  LG +T+                    V
Sbjct: 12  PVRVALRVRPLLPKELLHGHQSCLQV----EPGLGRVTLGRDRHFGFHVVLAEDAGQEAV 67

Query: 309 FAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT------QQNRGVNYRTLELLFKI 361
           +     PL+ +  +G+N  +FAYGQTG+GKT+TM         +  +G+  R +   FK+
Sbjct: 68  YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL 127

Query: 362 AEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENI 421
            +E        + VS LEVY E+ RDLL+    S+ +++R+   G   + G+ E  +E +
Sbjct: 128 IDENDLL-DCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGL 186

Query: 422 KEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL--------INGECTKSKLW 473
            EV  +L +G+ AR  G+ ++N  SSRSH +  ++++ +            G+   SK  
Sbjct: 187 DEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFH 246

Query: 474 LVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA---TKSGHIPYRNSKLTHL 530
            VDLAGSER+ KT   GERLKE+  IN SL ALG+VIS+L     +  HIPYR+SK+T +
Sbjct: 247 FVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRI 306

Query: 531 LQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           L+DSLGG++KT+M   +SPS  D  ETL++LN+ASR +
Sbjct: 307 LKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score =  371 bits (955), Expect = e-122
 Identities = 121/334 (36%), Positives = 170/334 (50%), Gaps = 42/334 (12%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV--------------------- 306
           NI+V  RCRPL+  E       ++      D     + V                     
Sbjct: 5   NIKVIVRCRPLNARETRENALNIIRM----DEASAQVIVDPPEQEKSATQAKKVPRTFTF 60

Query: 307 -----------DVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRT 354
                       +F     PL+ +VL+G+N  IFAYGQTG GKT+TM G ++  G    +
Sbjct: 61  DAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNS 120

Query: 355 LELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLT 414
            + LF           + +  S LE+YNE+IRDL+  +    KL +++      +V GL+
Sbjct: 121 FKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN---TKLPLKEDKTRGIYVDGLS 177

Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGE--CTKSKL 472
             ++    E+  ++  G   R V +  +N+ SSRSH +  + ++   +I  +      KL
Sbjct: 178 MHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKL 237

Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQ 532
            LVDLAGSER +KT   GE L E   IN SLSALG VIS L   + HIPYR+SKLT LLQ
Sbjct: 238 NLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQ 297

Query: 533 DSLGGDSKTLMFLQISPSEQDLGETLSSLNFASR 566
           DSLGG+SKTLM   ISP+  +  ET+S+L +A R
Sbjct: 298 DSLGGNSKTLMCANISPASTNYDETMSTLRYADR 331

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score =  362 bits (931), Expect = e-118
 Identities = 126/352 (35%), Positives = 188/352 (53%), Gaps = 56/352 (15%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV--------------------- 306
            ++V  R RP+++ E       VVD     D    IL                       
Sbjct: 2   KVKVAVRIRPMNRRETDLHTKCVVDV----DANKVILNPVNTNLSKGDARGQPKVFAYDH 57

Query: 307 -----------------DVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR 348
                             VF      ++ +  DGYN CIFAYGQTG+GK++TM GT    
Sbjct: 58  CFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQP 117

Query: 349 GVNYRTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQ-ASEG 406
           G+  R    LF +  +E  E  ++ + VS +E+YNE++RDLLD   + + L++R+ +  G
Sbjct: 118 GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLG 177

Query: 407 FHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISV--KAKNLIN 464
             +V GL++  + + K++  ++  G+ +R V + N+NE SSRSH +  I++     ++ +
Sbjct: 178 P-YVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKS 236

Query: 465 GECTK--SKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA------TK 516
           G   +   KL LVDLAGSER  KT   G+RLKE  NIN+SL+ LG VIS+LA       K
Sbjct: 237 GTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNK 296

Query: 517 SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           +  +PYR+S LT LL+DSLGG+SKT M   +SP+  +  ETLS+L +A R +
Sbjct: 297 NKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score =  359 bits (925), Expect = e-117
 Identities = 117/328 (35%), Positives = 171/328 (52%), Gaps = 35/328 (10%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGIL--------------------TV 306
           G + V  R RPL+  E S G    V +      +  ++                    T 
Sbjct: 4   GAVAVCVRVRPLNSREESLGETAQVYW----KTDNNVIYQVDGSKSFNFDRVFHGNETTK 59

Query: 307 DVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER 365
           +V+ + A+P++ S + GYN  IFAYGQT +GKT+TM G++ + GV  R +  +F+  ++ 
Sbjct: 60  NVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF 119

Query: 366 KETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVW 425
            +   + + VS +E+YNE I DLL  +   K L IR+      +V  LTE  +   +   
Sbjct: 120 PDR-EFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMAL 178

Query: 426 DVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL-----INGECTKSKLWLVDLAGS 480
             +  G  +R  G   +N+ SSRSH +  + ++++         G    S L LVDLAGS
Sbjct: 179 KWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGS 238

Query: 481 ERLAKTEVQGERLKEAQNINRSLSALGDVISSLA--TKSGHIPYRNSKLTHLLQDSLGGD 538
           ER A+T   G RLKE  NINRSL  LG VI  L+     G I YR+SKLT +LQ+SLGG+
Sbjct: 239 ERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGN 298

Query: 539 SKTLMFLQISPSEQDLGETLSSLNFASR 566
           +KT +   I+P      ETL++L FAS 
Sbjct: 299 AKTRIICTITPV--SFDETLTALQFAST 324

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score =  358 bits (921), Expect = e-117
 Identities = 98/326 (30%), Positives = 154/326 (47%), Gaps = 40/326 (12%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILT----------------VDVFAD 311
            +R+  R  P  +         VV F    DG+  I+                  +++  
Sbjct: 23  AVRIAVREAPYRQFLGR-REPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQA 81

Query: 312 -ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ------QNRGVNYRTLELLFKIAEE 364
              PLV  +L+G+     AYGQTGTGK+++M  T       ++ G+  R L  +F+    
Sbjct: 82  LILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTA 141

Query: 365 RKET--FTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIK 422
           R+E       +  S +E+YNE+  DLL ++P    +  R            T   + +  
Sbjct: 142 RQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAAR--------CQRCTCLPLHSQA 193

Query: 423 EVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSER 482
           ++  +L +G+  R V   N+N +SSRSH ++ I VK+K         S++ +VDLAGSE 
Sbjct: 194 DLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT------HHSRMNIVDLAGSEG 247

Query: 483 LAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTL 542
           + +T  +G   +E  NIN  L ++  V+ S+A     IPYR+S LT +LQ SL   S   
Sbjct: 248 VRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLT 307

Query: 543 MFLQISPSEQDLGETLSSLNFASRVR 568
               ISP + DL ETLS+L F +  +
Sbjct: 308 FLACISPHQCDLSETLSTLRFGTSAK 333

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score =  358 bits (921), Expect = e-117
 Identities = 126/347 (36%), Positives = 185/347 (53%), Gaps = 53/347 (15%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV--------------------- 306
           NI+V  RCRP +  E  A    +V+     D     ++V                     
Sbjct: 9   NIQVVVRCRPFNLAERKASAHSIVEC----DPVRKEVSVRTGGLADKSSRKTYTFDMVFG 64

Query: 307 ------DVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ-----------QNR 348
                 DV+     P++  V+ GYN  IFAYGQTGTGKTFTMEG +              
Sbjct: 65  ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA 124

Query: 349 GVNYRTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEG 406
           G+  RTL  +F K+ +   E   +S+ VS LE+YNE++ DLL+ +S  S++L++      
Sbjct: 125 GIIPRTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 181

Query: 407 FH--HVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL-I 463
                + GL E  + N  EV+ +L  G+  R   +  +N +SSRSH +  +++  K   I
Sbjct: 182 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 241

Query: 464 NGE--CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIP 521
           +GE      KL LVDLAGSE + ++    +R +EA NIN+SL  LG VI++L  ++ H+P
Sbjct: 242 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVP 301

Query: 522 YRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           YR SKLT +LQDSLGG ++T +   ISP+  +L ETLS+L +A R +
Sbjct: 302 YRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK 348

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score =  358 bits (921), Expect = e-116
 Identities = 126/343 (36%), Positives = 182/343 (53%), Gaps = 49/343 (14%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV--------------------- 306
           NI+V+ R RPL+  E     A VVD      G   ++T                      
Sbjct: 24  NIQVYVRVRPLNSRERCIRSAEVVDV----VGPREVVTRHTLDSKLTKKFTFDRSFGPES 79

Query: 307 ---DVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ-----------QNRGVN 351
              DV++   SPL+  VL+GYN  +FAYGQTGTGKT TM G +            + G+ 
Sbjct: 80  KQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGII 139

Query: 352 YRTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHH 409
            R L  LF ++     E   Y++ +S LE+YNE++ DLL T  T+K ++      +G   
Sbjct: 140 PRALSHLFDELRMMEVE---YTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVI 196

Query: 410 VPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISV--KAKNLINGEC 467
           + GL E  + +  +V+ +L  G   R   +  +N  SSRSH +  I V  +   +   + 
Sbjct: 197 IQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDM 256

Query: 468 TK-SKLWLVDLAGSERLAKT-EVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
            K  KL LVDLAGSE ++K    +G R++E  NIN+SL  LG VI++L  ++ H+PYR S
Sbjct: 257 LKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRES 316

Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           KLT LLQ+SLGG +KT +   ISP  +D+ ETLS+L +A R +
Sbjct: 317 KLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAK 359

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score =  358 bits (920), Expect = e-116
 Identities = 142/335 (42%), Positives = 206/335 (61%), Gaps = 41/335 (12%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV-------------------- 306
            ++RV  RCRP++ +E +A +  VVD     D +LG ++V                    
Sbjct: 21  ESVRVVVRCRPMNGKEKAASYDKVVDV----DVKLGQVSVKNPKGTAHEMPKTFTFDAVY 76

Query: 307 -------DVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQN---RGVNYRTL 355
                  +++ +   PLV SVL G+N  IFAYGQTGTGKT+TMEG + +   RGV   + 
Sbjct: 77  DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSF 136

Query: 356 ELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTE 415
           + +F      +    Y +  S LE+Y E+IRDLL    T K+LE+++  +   +V  L+ 
Sbjct: 137 DHIFTHISRSQNQ-QYLVRASYLEIYQEEIRDLLSKDQT-KRLELKERPDTGVYVKDLSS 194

Query: 416 AKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL-INGECT--KSKL 472
              +++KE+  V+++G+  R+VG+ N+NEHSSRSH +  I+++   + ++GE      KL
Sbjct: 195 FVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKL 254

Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA-TKSGHIPYRNSKLTHLL 531
            LVDLAGSER AKT  QGERLKEA  IN SLSALG+VIS+L   KS HIPYR+SKLT LL
Sbjct: 255 NLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLL 314

Query: 532 QDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASR 566
           QDSLGG++KT+M   + P+  ++ ETL++L +A+R
Sbjct: 315 QDSLGGNAKTVMVANVGPASYNVEETLTTLRYANR 349

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score =  355 bits (913), Expect = e-115
 Identities = 125/346 (36%), Positives = 181/346 (52%), Gaps = 48/346 (13%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAK-------DGELGILTV-------------- 306
           +++V  R RP + +E +AG   VV               E+                   
Sbjct: 11  HMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNK 70

Query: 307 -----------------DVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR 348
                            +VF     P++ S L+GYN  + AYG TG GKT TM G+    
Sbjct: 71  DLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEP 130

Query: 349 GVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH 408
           GV Y T+  L+K  +E KE    S +VS LEVYNEQIRDLL     S  L +R+ ++   
Sbjct: 131 GVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLV---NSGPLAVREDTQKGV 187

Query: 409 HVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL---ING 465
            V GLT  + ++ +E+  +L  G+  R     ++N  SSRSH +  I ++ ++    IN 
Sbjct: 188 VVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQ 247

Query: 466 ECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA---TKSGHIPY 522
               +K+ L+DLAGSER + +  +G R  E  NINRSL ALG+VI++LA    K+ HIPY
Sbjct: 248 NVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPY 307

Query: 523 RNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           RNSKLT LL+DSLGG+ +T+M   +SPS     +T ++L +A+R +
Sbjct: 308 RNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAK 353

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score =  353 bits (909), Expect = e-115
 Identities = 117/350 (33%), Positives = 181/350 (51%), Gaps = 49/350 (14%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDF---------------------------SAAKDG 299
            +++V  R RP +  E S     ++                             S     
Sbjct: 4   ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63

Query: 300 ELGILT-VDVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQ--NRGVNYRTL 355
           ++   +   V+ D    ++    +GYNVCIFAYGQTG GK++TM G Q+   +G+  +  
Sbjct: 64  DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123

Query: 356 ELLFK-IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLT 414
           E LF  I +   +  +YS+ VS +E+Y E++RDLL+       L +R+      +V  L+
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK-NKGNLRVREHPLLGPYVEDLS 182

Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISV--KAKNLINGECTK--S 470
           +  + +  ++ D++  G+  R V + N+NE SSRSH +  I    K  +      T+  S
Sbjct: 183 KLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242

Query: 471 KLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA------------TKSG 518
           K+ LVDLAGSER   T  +G RLKE  NIN+SL+ LG VIS+LA             K+ 
Sbjct: 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTD 302

Query: 519 HIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
            IPYR+S LT LL+++LGG+S+T M   +SP++ +  ETLS+L +A R +
Sbjct: 303 FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score =  342 bits (879), Expect = e-110
 Identities = 101/334 (30%), Positives = 157/334 (47%), Gaps = 40/334 (11%)

Query: 269 IRVFCRCRPLSKEEASAGHAMVVDF---------------SAAKDGELGILTVD-VFADA 312
           I+V  R RPLS+ E     + ++                    K  E     VD VF D 
Sbjct: 2   IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61

Query: 313 S-----------PLVTSVLD-GYNVCIFAYGQTGTGKTFTMEGT-----QQNRGVNYRTL 355
                       PL+  + + G     FAYGQTG+GKT+TM G+         G+     
Sbjct: 62  VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121

Query: 356 ELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTE 415
             +F       +  T  I +S  E+Y  ++ DLL      K +   +  +    V  L  
Sbjct: 122 GDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR---KMVAALENGKKEVVVKDLKI 178

Query: 416 AKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLV 475
            ++   +E+   +  G   R +G N+ N+ SSRSH +L I +K  N      +  K+  +
Sbjct: 179 LRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSLGKIAFI 235

Query: 476 DLAGSERLAKTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS 534
           DLAGSER A T  Q ++ + +  NINRSL AL + I ++ +   HIP+R+S+LT +L+D 
Sbjct: 236 DLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDI 295

Query: 535 LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
             G SK++M   ISP+     +TL++L ++SRV+
Sbjct: 296 FVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score =  338 bits (870), Expect = e-108
 Identities = 123/376 (32%), Positives = 180/376 (47%), Gaps = 76/376 (20%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFS-----------------------AAKDGELGI 303
            N+RV  R R     E       +V+                         + +  E   
Sbjct: 38  ANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKS 97

Query: 304 LTVD------------------VFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT 344
            T D                  V+       +    +GY+ CIFAYGQTG+GK++TM GT
Sbjct: 98  FTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT 157

Query: 345 QQNRGVNYRTLELLFKI---AEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKK---L 398
               G+  RT E LF+    A++     +Y++ VS  EVYNE +RDLL     +K    L
Sbjct: 158 PDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYL 217

Query: 399 EIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISV- 457
           ++R++     +V  LTE  +  ++E+   + IG  +R V S  +N+ SSRSH +  I + 
Sbjct: 218 KVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLK 277

Query: 458 -KAKNLINGECTK--SKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA 514
               +L   + T+  S++ LVDLAGSER   TE  G+RL+E  NIN+SL+ LG VI++LA
Sbjct: 278 QIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALA 337

Query: 515 ----------------------TKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQ 552
                                   +  +PYR+S LT LL+DSLGG+SKT M   ISP+  
Sbjct: 338 DPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT-- 395

Query: 553 DLGETLSSLNFASRVR 568
           D  ETLS+L +A + +
Sbjct: 396 DYDETLSTLRYADQAK 411

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score =  334 bits (860), Expect = e-107
 Identities = 103/337 (30%), Positives = 154/337 (45%), Gaps = 44/337 (13%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVD---------------FSAAKDGELGILTVD-VFAD 311
            I V  R RPL+K+E +     V+                    K  E      D  F +
Sbjct: 52  RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 111

Query: 312 AS-----------PLVTSVLDGYNVCIFAYGQTGTGKTFTMEG------TQQNRGVNYRT 354
            +           PLV ++ +G     FAYGQTG+GKT TM G         ++G+    
Sbjct: 112 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMA 171

Query: 355 LELLFK-IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGL 413
              +F    +         + V+  E+YN ++ DLL+      KL + +  +    V GL
Sbjct: 172 SRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKK---AKLRVLEDGKQQVQVVGL 228

Query: 414 TEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLW 473
            E  + +  +V  ++ +GS  R  G    N +SSRSH    I ++AK  ++G     K  
Sbjct: 229 QEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHG-----KFS 283

Query: 474 LVDLAGSERLAKTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQ 532
           LVDLAG+ER A T     + + E   IN+SL AL + I +L     H P+R SKLT +L+
Sbjct: 284 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLR 343

Query: 533 DS-LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           DS +G +S+T M   ISP       TL++L +A RV+
Sbjct: 344 DSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVK 380

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score =  331 bits (850), Expect = e-105
 Identities = 105/347 (30%), Positives = 155/347 (44%), Gaps = 44/347 (12%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVD---------------FSAAKDGELGILTVD-VFAD 311
            I V  R RPL+K+E +     V+                    K  E      D  F +
Sbjct: 72  RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 131

Query: 312 -----------ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG------TQQNRGVNYRT 354
                      A PLV ++ +G     FAYGQTG+GKT TM G         ++G+    
Sbjct: 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMA 191

Query: 355 LELLFK-IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGL 413
              +F    + R       + V+  E+YN ++ DLL+      KL + + S     V GL
Sbjct: 192 SRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKK---AKLRVLEDSRQQVQVVGL 248

Query: 414 TEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLW 473
            E  +    +V  ++++GS  R  G    N +SSRSH    I ++ K  ++G     K  
Sbjct: 249 QEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHG-----KFS 303

Query: 474 LVDLAGSERLAKTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQ 532
           LVDLAG+ER A T     + + E   IN+SL AL + I +L     H P+R SKLT +L+
Sbjct: 304 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLR 363

Query: 533 DS-LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
           DS +G +S+T M   ISP       TL++L +A RV+ +        
Sbjct: 364 DSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHHHHH 410

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100

 Score =  117 bits (294), Expect = 2e-31
 Identities = 42/102 (41%), Positives = 67/102 (65%), Gaps = 3/102 (2%)

Query: 496 AQNINRSLSALGDVISSLA-TKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDL 554
           A+NIN+SLSALG+VIS+LA     H+PYR+SK+T +LQDSL G+ +T + +  SPS  + 
Sbjct: 1   AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60

Query: 555 GETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQ 596
            ET S+L F  R + ++ + +    +++  ++ K   EK K+
Sbjct: 61  AETKSTLMFGQRAKTIKNTVSVNL-ELTA-EEWKKKYEKEKE 100

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117

 Score =  115 bits (291), Expect = 9e-31
 Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 3/117 (2%)

Query: 500 NRSLSALGDVISSLA-TKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETL 558
           N+SLSALG+VIS+LA     H+PYR+SK+T +LQDSLGG+ +T + +  SPS  +  ET 
Sbjct: 1   NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60

Query: 559 SSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNL 615
           S+L F  R + ++ + +    +++  ++ K   EK K++  +   VIQ LE      
Sbjct: 61  STLMFGQRAKTIKNTVSVNL-ELTA-EEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174

 Score = 91.9 bits (228), Expect = 1e-21
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 16/119 (13%)

Query: 4   LYQSARFG--NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDI 61
           LYQ+ R+   +F Y I     G+Y++ L FAE+  A      +VFDV +    V+ ++DI
Sbjct: 56  LYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQS--QQKVFDVRVNGHTVVKDLDI 113

Query: 62  YSIVGANKPL-QVVDVRVSVGMDEV----------LLIRF-DGACGSPIVNGICIKNAT 108
           +  VG +    +++ + +  G   V          L + F  G   +P V  + I   T
Sbjct: 114 FDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALFIMKGT 172

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 5e-10
 Identities = 103/721 (14%), Positives = 212/721 (29%), Gaps = 227/721 (31%)

Query: 179 LEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKR----LWII----------A 224
            +      D K  Q++     L K   ++  +    +         W +           
Sbjct: 26  EDAFVDNFDCKDVQDM-PKSILSK--EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 225 MNELERKILIW-----KEEHSQLAREAHECASSVPQLNKMVSTIQVLGNIRVFCRCRPLS 279
           + E+ R    +     K E  Q +           Q +++ +  QV     V  R +P  
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE---QRDRLYNDNQVFAKYNV-SRLQPYL 138

Query: 280 K-EEASAGHAMVVDFSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKT 338
           K  +A                                +  +    NV I   G  G+GKT
Sbjct: 139 KLRQA--------------------------------LLELRPAKNVLI--DGVLGSGKT 164

Query: 339 ---------FTMEGTQQNRGV------NYRTLE--------LLFKIAEERKETFTYSISV 375
                    + ++  + +  +      N  + E        LL++I         +S ++
Sbjct: 165 WVALDVCLSYKVQ-CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 376 S-ALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNA 434
              +     ++R LL + P    L +                    +  V +      NA
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV--------------------LLNVQNAKAW--NA 261

Query: 435 RAVGSNNVNEHSSRSHCMLCISVKAKNLIN--GECTKSKLWLVDLAGS-------ERLAK 485
             +             C + ++ + K + +     T + + L   + +         L K
Sbjct: 262 FNLS------------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 486 -TEVQGERL-KEAQNIN-RSLSALGDVISSLATKSGHIPYRN-SKLTHLLQDSLGGDSKT 541
             + + + L +E    N R LS + + I        +  + N  KLT +++ SL      
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN----- 364

Query: 542 LMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMML--EKTKQEVG 599
                + P+E              R     LS       I     +  ++  +  K +V 
Sbjct: 365 ----VLEPAEY-------------RKMFDRLSVFPPSAHIP--TILLSLIWFDVIKSDV- 404

Query: 600 SKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEK----INELESQLESKTQLCRQLEKQLL 655
               V+ KL                L + Q ++    I  +  +L+ K +    L + ++
Sbjct: 405 --MVVVNKLH------------KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 656 QVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTAL-HHKVRELENRLKA-RTQEFE 713
                         N+ +   + ++ +  +      + + HH    L+N     R   F 
Sbjct: 451 D-----------HYNIPKTF-DSDDLIPPYLDQYFYSHIGHH----LKNIEHPERMTLFR 494

Query: 714 VHSGMLQQKIAELEEKLRKKEEYATAYCFREMPVTTPYNATVSRVETTIDDMDPPSLRI- 772
               M+      LE+K+R                +T +NA+ S + T         L+  
Sbjct: 495 ----MVFLDFRFLEQKIRH--------------DSTAWNASGSILNTLQQ------LKFY 530

Query: 773 LNHNGSNRAMNTESESDLLKGTNSLRELRRKRQTQWRGSENNILLSASFLEKNSLTAESN 832
             +   N        + +L        L +  +        ++L  A   E  ++  E++
Sbjct: 531 KPYICDNDPKYERLVNAILDF------LPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584

Query: 833 K 833
           K
Sbjct: 585 K 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 2e-06
 Identities = 66/480 (13%), Positives = 151/480 (31%), Gaps = 111/480 (23%)

Query: 402 QASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKN 461
           +  E  +    +     +   + +D   +    +++ S    +H         I + +K+
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH---------I-IMSKD 59

Query: 462 LINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIP 521
            ++G  T    W +     E + K       ++E   IN        ++S + T+    P
Sbjct: 60  AVSG--TLRLFWTLLSKQEEMVQKF------VEEVLRINYKF-----LMSPIKTEQ-RQP 105

Query: 522 YRNSKLTHLLQDSLGGDSKTLMFLQISPSEQ--DLGETLSSLNFASRV-----RGVELSP 574
              +++    +D L  D++      +S  +    L + L  L  A  V      G     
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG----- 160

Query: 575 ARKQ---IDISKLQKVKMMLEK-----TKQEVGSKDDVIQKLEENFQNLEVKAKGN-VQL 625
           + K    +D+    KV+  ++        +   S + V++ L    Q L  +   N    
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML----QKLLYQIDPNWTSR 216

Query: 626 C---KNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRK--VKELEN 680
                N + +I+ ++++L  +    +  E  LL           +  NVQ          
Sbjct: 217 SDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLL-----------VLLNVQNAKAWNAFNL 264

Query: 681 KLK----EHDQS--ENVTALHHKVRELENRLKARTQE--FEVHSGMLQQKIAELEEKLRK 732
             K       +   + ++A       L++     T +    +    L  +  +L  ++  
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 733 KEEYATAYC---FREMPVTTPY--NATVSRVETTI----DDMDPPSLR-------ILNHN 776
                 +      R+   T     +    ++ T I    + ++P   R       +    
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP- 383

Query: 777 GSNRAMNTESESDLLKGTNSLRELRRKRQTQWRGS-ENNILLSASFLEKNSLTAESNKPR 835
                 +    + LL                W    ++++++  + L K SL  +  K  
Sbjct: 384 ------SAHIPTILL-------------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 28/168 (16%), Positives = 74/168 (44%), Gaps = 15/168 (8%)

Query: 583  KLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLES 642
            +L++ +   +K + E  + D  I+K+E++   +E +     +  K  +E++++L + L  
Sbjct: 963  QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022

Query: 643  KTQLCRQLEK---QLLQVSEGMKGK----EEICSNVQRKVKELENKLKE-----HDQSEN 690
            + +  + L K   +   +   ++ +    E+    +++  ++LE +  +      +    
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082

Query: 691  VTALHHKVRELENRLKARTQEFEVHSGM---LQQKIAELEEKLRKKEE 735
            +  L  ++ + E  L+A     E  +       +KI ELE  +   +E
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 32/168 (19%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 565  SRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQ 624
             +++ +E      +   +KL K + +LE+   ++ +    + + EE  +NL  K K    
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN---LAEEEEKAKNLT-KLK---- 1034

Query: 625  LCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKE 684
                 +  I+ELE +L+ + +  ++LEK   ++        E  + +Q ++ EL+ +L +
Sbjct: 1035 --NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

Query: 685  HDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRK 732
             +  E + A   ++ +  ++     ++       L+  I++L+E L  
Sbjct: 1093 KE--EELQAALARLEDETSQKNNALKKIRE----LESHISDLQEDLES 1134

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 1e-06
 Identities = 36/180 (20%), Positives = 75/180 (41%), Gaps = 18/180 (10%)

Query: 564  ASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNV 623
              +++      A  +    +L   K  LE+   E+ ++   I++ EE  Q L+ + K   
Sbjct: 898  QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR---IEEEEERSQQLQAEKKK-- 952

Query: 624  QLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK 683
                  Q+++ +LE QLE +    ++L+ + +     +K  E+    ++ +  +L  + K
Sbjct: 953  -----MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007

Query: 684  ----EHDQ-SENVTALHHKVRELE---NRLKARTQEFEVHSGMLQQKIAELEEKLRKKEE 735
                     + N+     K + L    N+ ++   E EV     ++   ELE+  RK E 
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.1 bits (117), Expect = 7e-06
 Identities = 25/170 (14%), Positives = 71/170 (41%), Gaps = 19/170 (11%)

Query: 583  KLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLES 642
            ++Q     L++TK+     +  +++LE+    L  +     +  + + E   E E     
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 643  KTQLCRQLEKQLLQ--------------VSEGMKGKEEICSNVQRKVKELENKLKEHDQS 688
                 ++LE+ L +              +    K  ++   +++ +++E E   ++  Q 
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL-QL 976

Query: 689  ENVTALHHKVRELENRLKA---RTQEFEVHSGMLQQKIAELEEKLRKKEE 735
            E       K++++E+ +     +  +      +L++++++L   L ++EE
Sbjct: 977  EK-VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 32/182 (17%), Positives = 76/182 (41%), Gaps = 12/182 (6%)

Query: 566  RVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGS----KDDVIQKLEENFQNLEVKAKG 621
            R +  E      +   ++L + K +L++  Q         +++  +L    Q LE     
Sbjct: 872  RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE 931

Query: 622  NVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENK 681
                 + ++E+  +L+++ +   Q    LE+QL +     +  +        K+K++E+ 
Sbjct: 932  MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991

Query: 682  LKEHDQSEN-----VTALHHKVRELENRLKARTQEFEVHSGM---LQQKIAELEEKLRKK 733
            +   +   N        L  +V +L   L    ++ +  + +    +  I+ELE +L+K+
Sbjct: 992  ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051

Query: 734  EE 735
            E+
Sbjct: 1052 EK 1053

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 27/139 (19%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 605 IQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGK 664
           + + EE  Q  + + +   +  +  + ++ ELE +     +    L+++L   +E     
Sbjct: 852 VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEA 911

Query: 665 EEICSNVQRKVKELENKLKE-----HDQSENVTALHHKVRELENR---LKARTQEFEVHS 716
           EE+   +  K +ELE  L E      ++ E    L  + ++++ +   L+ + +E E   
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971

Query: 717 GMLQQKIAELEEKLRKKEE 735
             LQ +    + K++K E+
Sbjct: 972 QKLQLEKVTADGKIKKMED 990

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.1 bits (133), Expect = 8e-08
 Identities = 26/160 (16%), Positives = 58/160 (36%), Gaps = 13/160 (8%)

Query: 580  DISKLQKVKMMLEKTKQE----VGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINE 635
             + + +K+ + LE    +    +  ++   + L E   NLE+           + EK+  
Sbjct: 915  SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITY-------STETEKLRS 967

Query: 636  LESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALH 695
               +L    +  +    ++L + E +    +     Q + K +E    ++        L 
Sbjct: 968  DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE--TEQLV 1025

Query: 696  HKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEE 735
             +++E    LK   +E         ++I E  EK   +E 
Sbjct: 1026 SELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 28/166 (16%), Positives = 69/166 (41%), Gaps = 9/166 (5%)

Query: 575  ARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKIN 634
             R+ +   +L+K+K+     ++       +  K+ +  + ++ + K      K+  EK+N
Sbjct: 897  YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY----KSLLEKMN 952

Query: 635  ELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKE-----HDQSE 689
             LE    ++T+  R   ++L    E  K       ++Q ++ +L  +L +         E
Sbjct: 953  NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012

Query: 690  NVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEE 735
                  H+  +L + LK +    +     L ++I +  +++ +  E
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME 1058

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 22/170 (12%), Positives = 60/170 (35%), Gaps = 19/170 (11%)

Query: 583 KLQKVKMMLEKTKQ--EVGSKDDVIQKLEENFQ---------------NLEVKAKGNVQL 625
            +QK + M    K+   +      +Q L   +                 ++   +G +  
Sbjct: 821 IIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLAR 880

Query: 626 CKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEH 685
               +     +  Q   +  + ++  K+L   +  ++  +++   ++ K+ +L+ K+ E 
Sbjct: 881 VHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE- 939

Query: 686 DQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEE 735
            Q++   +L  K+  LE      T++       L+    E +    +   
Sbjct: 940 -QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLS 988

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 23/136 (16%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 575  ARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKIN 634
                 +  KL+     L  +++E  +  + +  L+E    L  +        K  +E  +
Sbjct: 956  ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015

Query: 635  ELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTAL 694
            + + + E   QL  +L++Q   +      KEE+   +  + KE+   +++    E     
Sbjct: 1016 KYKHETE---QLVSELKEQNTLLK---TEKEELNRRIHDQAKEITETMEKKLVEET---- 1065

Query: 695  HHKVRELENRLKARTQ 710
              ++    N  + R Q
Sbjct: 1066 -KQLELDLNDERLRYQ 1080

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 54.2 bits (129), Expect = 1e-07
 Identities = 31/184 (16%), Positives = 78/184 (42%), Gaps = 3/184 (1%)

Query: 552 QDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEEN 611
             L + + S        G+   P   ++ + KLQ +K    +  ++    ++++Q   ++
Sbjct: 408 SGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKS 467

Query: 612 FQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNV 671
            +++        Q    ++++I     + ES     + L +   +  + M+ KE      
Sbjct: 468 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 527

Query: 672 QRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLR 731
            +++ E     +     E    L  K++E E  LK   + F+  S +++ +I +L+ K+R
Sbjct: 528 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLK---EGFQKESRIMKNEIQDLQTKMR 584

Query: 732 KKEE 735
           +++ 
Sbjct: 585 RRKA 588

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 48.9 bits (117), Expect = 8e-06
 Identities = 24/156 (15%), Positives = 44/156 (28%), Gaps = 16/156 (10%)

Query: 582  SKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLE-----VKAKGNVQLCKNQQEKINEL 636
               Q+    L    +       ++QK     + LE                +    +   
Sbjct: 865  KAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAK 924

Query: 637  ESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHH 696
               LE+    C+ LE Q    S+ +    ++       V EL  +      ++  T +  
Sbjct: 925  LKNLEAFDGECQSLEGQ--SNSDLLSILAQLTELNYNGVPELTERKDT-FFAQQWTGVKS 981

Query: 697  KVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRK 732
                 +N L A  +          QKI +L      
Sbjct: 982  SAETYKNTLLAELERL--------QKIEDLHHHHHH 1009

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 47.3 bits (112), Expect = 9e-06
 Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 2/154 (1%)

Query: 575 ARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKIN 634
           +R Q D  K++  ++ L++ K      D   +++      +E   +   +  +  + K  
Sbjct: 132 SRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCA 191

Query: 635 ELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTAL 694
           ELE ++++ T   + LE Q  + S+     EE    +  K+KE E + +  ++S  VT L
Sbjct: 192 ELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERS--VTKL 249

Query: 695 HHKVRELENRLKARTQEFEVHSGMLQQKIAELEE 728
              + +LE+ L A+  +++  S  L   + ++  
Sbjct: 250 EKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 5/159 (3%)

Query: 582 SKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLE 641
            KL+  +  L+K  + +    + ++  E+   + E       +  +  +E+++  + +L 
Sbjct: 48  KKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLA 107

Query: 642 SKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKE-----HDQSENVTALHH 696
           +  Q   + EK   +   GMK  E      + K++  E +LKE      D       +  
Sbjct: 108 TALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167

Query: 697 KVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEE 735
           K+  +E+ L+   +  E+  G   +   E++      + 
Sbjct: 168 KLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKS 206

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 29/184 (15%), Positives = 72/184 (39%), Gaps = 11/184 (5%)

Query: 552 QDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEEN 611
           Q   E L            +L  A K  D     + +  ++  +      ++ ++  E  
Sbjct: 93  QLFEEELDRAQERLATALQKLEEAEKAAD-----ESERGMKVIESRAQKDEEKMEIQEIQ 147

Query: 612 FQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNV 671
            +  +  A+   +  +    K+  +ES LE   +     E +  ++ E +K       ++
Sbjct: 148 LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSL 207

Query: 672 QRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLR 731
           + + ++   K  +++  E +  L  K++E E R +   +        L++ I +LE++L 
Sbjct: 208 EAQAEKYSQKEDKYE--EEIKVLSDKLKEAETRAEFAERSVT----KLEKSIDDLEDELY 261

Query: 732 KKEE 735
            ++ 
Sbjct: 262 AQKL 265

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Length = 464

 Score = 46.2 bits (109), Expect = 4e-05
 Identities = 20/133 (15%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 625 LCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKE 684
           LC    E    L  Q ++   + R L+ ++ + S+      +  + +  K+ + + + K+
Sbjct: 80  LCPTGCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKD 139

Query: 685 HD-----QSENVTALHHKVRE-LENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYAT 738
           +D      +  +   ++ +++ L+N + +  +        L +KI +LE  +  + +Y  
Sbjct: 140 NDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCR 199

Query: 739 AYCFREMPVTTPY 751
           + C     +    
Sbjct: 200 SPCVASCNIPVVS 212

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 17/145 (11%), Positives = 45/145 (31%), Gaps = 19/145 (13%)

Query: 597 EVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQ 656
             GS       + +     + K   ++Q  ++   ++    S+++   +  +        
Sbjct: 14  RFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDE- 72

Query: 657 VSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHS 716
                  K  +      K +++  ++ +     ++      +R L+              
Sbjct: 73  -----SSKPNMIDAATLKSRKMLEEIMK--YEASILTHDSSIRYLQEIYN---------- 115

Query: 717 GMLQQKIAELEEKLRKKEEYATAYC 741
               QKI  L+EK+ + E      C
Sbjct: 116 -SNNQKIVNLKEKVAQLEAQCQEPC 139

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 607 KLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEE 666
           + E+   +++ +     +  +  + +  ELE ++ S  Q    L+ Q+    + +   EE
Sbjct: 10  EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE 69

Query: 667 ICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAEL 726
            C  + +   +LE K+KE      +        E+   L A+ ++ E     L++ I +L
Sbjct: 70  RCDQLIKNKIQLEAKVKE------MNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123

Query: 727 EEKLRK 732
           E  L K
Sbjct: 124 ELTLAK 129

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 11/167 (6%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 572 LSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQE 631
           L        + ++  +   ++  +  +  K   + K   + +          +     + 
Sbjct: 1   LGSNTHLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKL 60

Query: 632 KINELESQLESKTQLCRQLEKQLLQVS---EGMKGKEEICSNVQRKVKELENKLKEHDQS 688
           ++++ E  L+        ++K++ ++    E      E     + +  +   +++     
Sbjct: 61  QVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEE-DIAKERSNQANREIENL--Q 117

Query: 689 ENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEE 735
             +     K  +L+  +    +       +++ ++  ++E  +   +
Sbjct: 118 NEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFK 164

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 14/39 (35%)

Query: 720 QQKIAELEEKLRKKEEYATAYCFREMPVTTP---YNATV 755
           +Q + +L+  L+    YA          + P     AT+
Sbjct: 19  KQALKKLQASLKL---YA--------DDSAPALAIKATM 46

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 10/144 (6%)

Query: 576 RKQI--DISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKI 633
           + +    +  + + +   +K  + V   +  ++++E      E       +  K + +++
Sbjct: 148 KLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKE-------ESLKARLKEM 200

Query: 634 NELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTA 693
           + LE + E  T+    L+K                  V    K L     E D   +   
Sbjct: 201 SNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVE 260

Query: 694 LHHKVRELENRLKARTQEFEVHSG 717
           L  K  E+           +  SG
Sbjct: 261 L-TKDFEVRVHAPNGVLTIDNLSG 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	860
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	100.0
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	100.0
3u06_A	412	Protein claret segregational; motor domain, stalk	100.0
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	100.0
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	100.0
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	100.0
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	100.0
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	100.0
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	100.0
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	100.0
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	100.0
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	100.0
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	100.0
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	100.0
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	100.0
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	100.0
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	100.0
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	100.0
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	100.0
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	100.0
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	100.0
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	100.0
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	100.0
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	100.0
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	100.0
4h1g_A	715	Maltose binding protein-cakar3 motor domain fusio;	100.0
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	99.94
2o0a_A	298	S.cerevisiae chromosome XVI reading frame ORF YPL2	99.93
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	99.93
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.87
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.74
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.91
2w47_A	144	Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.	95.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.85
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	95.72
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.66
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.59
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.42
2w3j_A	145	Carbohydrate binding module; sugar-binding protein	95.23
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.87
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.65
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	94.59
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	93.84
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	93.36
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.14
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	93.02
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	92.93
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	92.66
2vzp_A	127	Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS	92.66
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.43
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.38
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	92.03
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.48
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	90.63
4etp_B	333	Spindle POLE BODY-associated protein VIK1; kinesin	90.58
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	90.56
2w87_A	139	Esterase D, XYL-CBM35; plant cell WALL degradation	90.42
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	90.06
2o14_A	375	Hypothetical protein YXIM; NESG, X-RAY, SR595, str	89.93
2wz8_A	156	Cellulosome protein dockerin type I; sugar binding	89.43
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	87.88
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	86.63
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	86.45
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	81.52
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	81.32
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	80.97

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*

Probab=100.00  E-value=3.4e-86  Score=736.12  Aligned_cols=331  Identities=42%  Similarity=0.666  Sum_probs=297.7

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEE------------------ecCCCCCccceeEEEEeccchhhHHHhhCCccEEE
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVD------------------FSAAKDGELGILTVDVFADASPLVTSVLDGYNVCI  327 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~------------------~~~~~~~~~~~~~~dVf~~v~plV~~~l~G~N~~I  327 (860)
                      .|||||||||||+++.|...+...++.                  |.++..+.....+.+||.++.|+|+++++|||+||
T Consensus         4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l~G~n~ti   83 (369)
T 3cob_A            4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCI   83 (369)
T ss_dssp             CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTCEEEE
T ss_pred             CCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhhhhhhhHhhhcCCceEE
Confidence            499999999999999987655432221                  22222223333446788889999999999999999


Q ss_pred             EeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCC-CCceEEEecCCC
Q 037169          328 FAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPT-SKKLEIRQASEG  406 (860)
Q Consensus       328 faYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~-~~~l~i~~~~~g  406 (860)
                      ||||||||||||||+|++.++|||||++++||+.+......+.|.|++||+|||||.|+|||++.+. ...+.|++++.+
T Consensus        84 fAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~~~~  163 (369)
T 3cob_A           84 FAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKG  163 (369)
T ss_dssp             EEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEECTTS
T ss_pred             EEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEECCCC
Confidence            9999999999999999999999999999999999998877799999999999999999999987543 468999999999


Q ss_pred             ceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCccccccc
Q 037169          407 FHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKT  486 (860)
Q Consensus       407 ~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t  486 (860)
                      +++|+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|...+...+....|+|+|||||||||..++
T Consensus       164 ~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t  243 (369)
T 3cob_A          164 MVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKS  243 (369)
T ss_dssp             CEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSSCCCCC
T ss_pred             CEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCCCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999988888888999999999999999999


Q ss_pred             ccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHH
Q 037169          487 EVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASR  566 (860)
Q Consensus       487 ~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r  566 (860)
                      ++.|.|++|+.+||+||++||+||.||+.+..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|
T Consensus       244 ~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~r  323 (369)
T 3cob_A          244 GSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASR  323 (369)
T ss_dssp             SSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHH
T ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccccccChHHHHHHHHHHHHHHHH
Q 037169          567 VRGVELSPARKQIDISKLQKVKMMLEKTKQE  597 (860)
Q Consensus       567 ~r~I~~~p~~~~~~~~~~~~lk~~l~~~k~e  597 (860)
                      ++.|++.|..+... .++.+|+.++..++.+
T Consensus       324 ak~i~~~~~~n~~~-~ei~~L~~~l~~~~~~  353 (369)
T 3cob_A          324 VRSIVNDPSKNVSS-KEVARLKKLVSYWKEQ  353 (369)
T ss_dssp             HHTCBCCCCCCEEC-HHHHHHHHHTTCC---
T ss_pred             HhhcccCCcccCCH-HHHHHHHHHHHHHHHh
Confidence            99999999987765 6677776666554443

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-85  Score=734.44  Aligned_cols=319  Identities=45%  Similarity=0.627  Sum_probs=269.4

Q ss_pred             hhHHhhhhhccC-CCeEEEEEeCCCCch-hhhCCCceEEE------------------------ecCCCCCccceeEEEE
Q 037169          255 QLNKMVSTIQVL-GNIRVFCRCRPLSKE-EASAGHAMVVD------------------------FSAAKDGELGILTVDV  308 (860)
Q Consensus       255 ~~~~~~~~~~~~-gnIrV~~RvRP~~~~-E~~~~~~~~v~------------------------~~~~~~~~~~~~~~dV  308 (860)
                      ..++|||+++++ |||||||||||+.+. |...+....+.                        |.++..+.....+.+|
T Consensus        46 ~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~V  125 (403)
T 4etp_A           46 VRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDV  125 (403)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHH
T ss_pred             HHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHH
Confidence            357789999887 999999999999876 33222222221                        2222222233334567


Q ss_pred             eccchhhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEecccccc
Q 037169          309 FADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRD  387 (860)
Q Consensus       309 f~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~D  387 (860)
                      |.++.|+|+++++|||+||||||||||||||||+|+  ++|||||++++||..+... ...|.|.|+|||+|||||.|+|
T Consensus       126 f~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~D  203 (403)
T 4etp_A          126 FKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVD  203 (403)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeE
Confidence            878899999999999999999999999999999997  4699999999999999874 4568999999999999999999


Q ss_pred             ccCCCC-------CCCceEEEecC-CCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEE
Q 037169          388 LLDTSP-------TSKKLEIRQAS-EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKA  459 (860)
Q Consensus       388 LL~~~~-------~~~~l~i~~~~-~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~  459 (860)
                      ||++.+       ....+.+++++ .++++|+|++++.|.|+++++.+|..|.++|++++|.||.+|||||+||+|+|.+
T Consensus       204 LL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~  283 (403)
T 4etp_A          204 LLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSG  283 (403)
T ss_dssp             TTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEE
T ss_pred             ccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEE
Confidence            998653       23457777766 4679999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCceeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCC---cccCCCCcchhhcccccC
Q 037169          460 KNLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLTHLLQDSLG  536 (860)
Q Consensus       460 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~---hVPYRdSKLT~LLqdsLg  536 (860)
                      .+...+....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+.+..   ||||||||||+||||+||
T Consensus       284 ~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLg  363 (403)
T 4etp_A          284 SNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLT  363 (403)
T ss_dssp             EETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTS
T ss_pred             eecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcC
Confidence            98888888899999999999999999999999999999999999999999999987654   999999999999999999


Q ss_pred             CCcceeEEEecCCCCCCHHhHHHHHHHHHHhhccccccc
Q 037169          537 GDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPA  575 (860)
Q Consensus       537 GnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~  575 (860)
                      |||+|+||+||||+..+++||++||+||+|+++|+++|.
T Consensus       364 Gnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r  402 (403)
T 4etp_A          364 GDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR  402 (403)
T ss_dssp             TTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred             CCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence            999999999999999999999999999999999998874

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=100.00  E-value=7.1e-85  Score=734.94  Aligned_cols=321  Identities=39%  Similarity=0.583  Sum_probs=267.2

Q ss_pred             hhHHhhhhhccC-CCeEEEEEeCCCCchhhhCCCceEE-----------------------EecCCCCCccceeEEEEec
Q 037169          255 QLNKMVSTIQVL-GNIRVFCRCRPLSKEEASAGHAMVV-----------------------DFSAAKDGELGILTVDVFA  310 (860)
Q Consensus       255 ~~~~~~~~~~~~-gnIrV~~RvRP~~~~E~~~~~~~~v-----------------------~~~~~~~~~~~~~~~dVf~  310 (860)
                      ..++|+|+++++ |||||||||||+.+.|...+...+.                       .|.++..+.....+.+||.
T Consensus        46 ~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~  125 (412)
T 3u06_A           46 ERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFE  125 (412)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHT
T ss_pred             HHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHH
Confidence            457888988877 9999999999999888654322111                       1222222333334467888


Q ss_pred             cchhhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEecccccccc
Q 037169          311 DASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRDLL  389 (860)
Q Consensus       311 ~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~DLL  389 (860)
                      .+.|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.+... ...+.|.|+|||+|||||.|+|||
T Consensus       126 ~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL  205 (412)
T 3u06_A          126 MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL  205 (412)
T ss_dssp             TTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETT
T ss_pred             HHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcC
Confidence            8999999999999999999999999999999999999999999999999999864 457899999999999999999999


Q ss_pred             CCCCCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeE
Q 037169          390 DTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTK  469 (860)
Q Consensus       390 ~~~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~  469 (860)
                      ++.+....+.+.+++.++++|+|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+...+....
T Consensus       206 ~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~  285 (412)
T 3u06_A          206 SNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISV  285 (412)
T ss_dssp             CCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTTEEEE
T ss_pred             CCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCCCEEE
Confidence            86554445566677889999999999999999999999999999999999999999999999999999998888888889


Q ss_pred             eeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCC
Q 037169          470 SKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISP  549 (860)
Q Consensus       470 skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP  549 (860)
                      |+|+|||||||||..    .|.|++|+.+||+||++||+||.||+.++.||||||||||+||||||||||+|+||+||||
T Consensus       286 ~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP  361 (412)
T 3u06_A          286 GSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSP  361 (412)
T ss_dssp             EEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECC
T ss_pred             EEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCC
Confidence            999999999999974    4689999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHHHHHhhccccccccccc
Q 037169          550 SEQDLGETLSSLNFASRVRGVELSPARKQI  579 (860)
Q Consensus       550 ~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~  579 (860)
                      +..+++||++||+||+|++.|+.+++++..
T Consensus       362 ~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~  391 (412)
T 3u06_A          362 FQDCFQESVKSLRFAASVNSCKMTKAKRNR  391 (412)
T ss_dssp             BGGGHHHHHHHHHHHHHHHHHCC-------
T ss_pred             ChhhHHHHHHHHHHHHHHhhcccccccccc
Confidence            999999999999999999999988876544

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=100.00  E-value=1.2e-83  Score=711.54  Aligned_cols=311  Identities=39%  Similarity=0.597  Sum_probs=255.2

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEEecCC----------------------------CCCccceeEEEEecc-chhhH
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVDFSAA----------------------------KDGELGILTVDVFAD-ASPLV  316 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~----------------------------~~~~~~~~~~dVf~~-v~plV  316 (860)
                      .+||||||||||+++.|...+...++.++..                            ..+.....+.+||.+ +.|+|
T Consensus         3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv   82 (350)
T 2vvg_A            3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI   82 (350)
T ss_dssp             -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred             CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence            4899999999999999987766555543321                            111111222456666 68999


Q ss_pred             HHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCC
Q 037169          317 TSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK  396 (860)
Q Consensus       317 ~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~  396 (860)
                      +++++|||+||||||||||||||||+|+++++|||||++++||+.+......+.|.|++||+|||||.|+|||++   .+
T Consensus        83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~---~~  159 (350)
T 2vvg_A           83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN---NT  159 (350)
T ss_dssp             HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT---EE
T ss_pred             HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC---Cc
Confidence            999999999999999999999999999999999999999999999987777899999999999999999999973   46


Q ss_pred             ceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCc--eeEeeEEE
Q 037169          397 KLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGE--CTKSKLWL  474 (860)
Q Consensus       397 ~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~--~~~skL~l  474 (860)
                      .+.+++++.++++|+|++++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|+|...+...+.  ...|+|+|
T Consensus       160 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~l  239 (350)
T 2vvg_A          160 KLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNL  239 (350)
T ss_dssp             EECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEE
T ss_pred             CceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999987654433  56799999


Q ss_pred             eecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCH
Q 037169          475 VDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDL  554 (860)
Q Consensus       475 VDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~  554 (860)
                      ||||||||..++++.|.|++|+.+||+||++||+||.||+.+..||||||||||+||||+||||++|+||+||||+..++
T Consensus       240 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~  319 (350)
T 2vvg_A          240 VDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNY  319 (350)
T ss_dssp             EECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGH
T ss_pred             EeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhccccccccccc
Q 037169          555 GETLSSLNFASRVRGVELSPARKQI  579 (860)
Q Consensus       555 ~ETl~TL~fA~r~r~I~~~p~~~~~  579 (860)
                      +||++||+||+|++.|++.|..+..
T Consensus       320 ~ETl~TL~fA~rak~i~n~~~~n~~  344 (350)
T 2vvg_A          320 DETMSTLRYADRAKQIKNKPRINED  344 (350)
T ss_dssp             HHHHHHHHHHHHHTTCBCCCCCCBS
T ss_pred             HHHHHHHHHHHHHhhccccceecCC
Confidence            9999999999999999999987754

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=100.00  E-value=9.1e-84  Score=716.22  Aligned_cols=314  Identities=42%  Similarity=0.616  Sum_probs=270.1

Q ss_pred             cCCCeEEEEEeCCCCchhhhCCCceEEEecCC----------------CCCccceeEEEEecc-chhhHHHhhCCccEEE
Q 037169          265 VLGNIRVFCRCRPLSKEEASAGHAMVVDFSAA----------------KDGELGILTVDVFAD-ASPLVTSVLDGYNVCI  327 (860)
Q Consensus       265 ~~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~----------------~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~I  327 (860)
                      ..|||||||||||+++.|...+...++.++..                ..+.....+.+||.+ +.|+|+++++|||+||
T Consensus         9 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ti   88 (365)
T 2y65_A            9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTI   88 (365)
T ss_dssp             CEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEE
T ss_pred             CCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEECCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEE
Confidence            34899999999999999987777666655442                112222233457766 6899999999999999


Q ss_pred             EeeccCCCCccccccCCC---CCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecC
Q 037169          328 FAYGQTGTGKTFTMEGTQ---QNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQAS  404 (860)
Q Consensus       328 faYGqTGSGKTyTM~G~~---~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~  404 (860)
                      ||||||||||||||+|+.   .++|||||++++||+.+......+.|.|+|||+|||||.|+|||++.  ...+.+++++
T Consensus        89 fAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~--~~~l~i~e~~  166 (365)
T 2y65_A           89 FAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVS--KVNLSVHEDK  166 (365)
T ss_dssp             EEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTT--CCSBCEEECS
T ss_pred             EeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCC--cCCceEEECC
Confidence            999999999999999975   45699999999999999988888999999999999999999999853  4679999999


Q ss_pred             CCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCccccc
Q 037169          405 EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA  484 (860)
Q Consensus       405 ~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~  484 (860)
                      .++++|.|++++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|+|.+.+...+....|+|+|||||||||..
T Consensus       167 ~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~  246 (365)
T 2y65_A          167 NRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVS  246 (365)
T ss_dssp             SSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCC--
T ss_pred             CCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEEEECCCCCcch
Confidence            99999999999999999999999999999999999999999999999999999998887788889999999999999999


Q ss_pred             ccccchhchHHHhHhhhhHHHHHHHHHHhccC-CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHH
Q 037169          485 KTEVQGERLKEAQNINRSLSALGDVISSLATK-SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNF  563 (860)
Q Consensus       485 ~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~-~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~f  563 (860)
                      ++++.|.|++|+.+||+||++||+||.||+.+ ..||||||||||+||||+||||++|+||+||||+..+++||++||+|
T Consensus       247 ~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~f  326 (365)
T 2y65_A          247 KTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDF  326 (365)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHH
T ss_pred             hcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHH
Confidence            99999999999999999999999999999986 58999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccccccccC
Q 037169          564 ASRVRGVELSPARKQID  580 (860)
Q Consensus       564 A~r~r~I~~~p~~~~~~  580 (860)
                      |+|++.|++.|..+...
T Consensus       327 A~rak~I~n~~~~n~~~  343 (365)
T 2y65_A          327 GRRAKTVKNVVCVNEEL  343 (365)
T ss_dssp             HHHHTTCEEECCCEEEC
T ss_pred             HHHHhcccCcceeCCCC
Confidence            99999999999887653

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=100.00  E-value=5.4e-83  Score=702.20  Aligned_cols=307  Identities=51%  Similarity=0.785  Sum_probs=266.3

Q ss_pred             CCCeEEEEEeCCCCchhhhCC-CceEEEe-------------------cCCCCCccceeEEEEeccchhhHHHhhCCccE
Q 037169          266 LGNIRVFCRCRPLSKEEASAG-HAMVVDF-------------------SAAKDGELGILTVDVFADASPLVTSVLDGYNV  325 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~-~~~~v~~-------------------~~~~~~~~~~~~~dVf~~v~plV~~~l~G~N~  325 (860)
                      .|||||||||||+++.|...+ ...++.+                   .++..+.....+.+||.++.|+|+++++|||+
T Consensus         3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~n~   82 (330)
T 2h58_A            3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNV   82 (330)
T ss_dssp             --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCCE
T ss_pred             CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHHHHHHHHHHhCCCEE
Confidence            499999999999998885432 1222333                   22222333334467888899999999999999


Q ss_pred             EEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCC-CCceEEEecC
Q 037169          326 CIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPT-SKKLEIRQAS  404 (860)
Q Consensus       326 ~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~-~~~l~i~~~~  404 (860)
                      ||||||||||||||||+|+++++|||||++++||+.+......+.|.|+|||+|||||.|+|||++.+. ...+.+++++
T Consensus        83 tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~  162 (330)
T 2h58_A           83 CIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDG  162 (330)
T ss_dssp             EEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECTTS
T ss_pred             EEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceEEEeecC
Confidence            999999999999999999999999999999999999998778899999999999999999999986543 2234445678


Q ss_pred             CCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCccccc
Q 037169          405 EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA  484 (860)
Q Consensus       405 ~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~  484 (860)
                      .++++|+|++++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|+|.+.+...+....|+|+|||||||||..
T Consensus       163 ~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~  242 (330)
T 2h58_A          163 SGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG  242 (330)
T ss_dssp             SCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCCCC
T ss_pred             CCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeCCCCCccc
Confidence            89999999999999999999999999999999999999999999999999999998888888889999999999999999


Q ss_pred             ccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHH
Q 037169          485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFA  564 (860)
Q Consensus       485 ~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA  564 (860)
                      ++++.|.|++|+.+||+||++||+||.||+.+..||||||||||+||||+||||++|+||+||||+..+++||++||+||
T Consensus       243 ~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA  322 (330)
T 2h58_A          243 KSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFA  322 (330)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHH
T ss_pred             ccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccc
Q 037169          565 SRVRGVEL  572 (860)
Q Consensus       565 ~r~r~I~~  572 (860)
                      +|+++|++
T Consensus       323 ~rak~i~~  330 (330)
T 2h58_A          323 ERVRSVEL  330 (330)
T ss_dssp             HHHC----
T ss_pred             HHHhhCcC
Confidence            99999863

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}

Probab=100.00  E-value=2e-83  Score=715.55  Aligned_cols=314  Identities=46%  Similarity=0.639  Sum_probs=241.3

Q ss_pred             HHhhhhhccC-CCeEEEEEeCCCCchhhhCCCc---------------eEEE----------------------ecCCCC
Q 037169          257 NKMVSTIQVL-GNIRVFCRCRPLSKEEASAGHA---------------MVVD----------------------FSAAKD  298 (860)
Q Consensus       257 ~~~~~~~~~~-gnIrV~~RvRP~~~~E~~~~~~---------------~~v~----------------------~~~~~~  298 (860)
                      .++||+++++ |||||||||||+++.|...+..               ..+.                      |.++..
T Consensus        11 ~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~V   90 (376)
T 2rep_A           11 SSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRV   90 (376)
T ss_dssp             ------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEE
T ss_pred             ccccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEE
Confidence            4688888877 9999999999999888654311               1111                      222222


Q ss_pred             CccceeEEEEeccchhhHHHhhCCccEEEEeeccCCCCccccccCCCC----CCCchhhHHHHHHHHHHHh-cCCceEEE
Q 037169          299 GELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQ----NRGVNYRTLELLFKIAEER-KETFTYSI  373 (860)
Q Consensus       299 ~~~~~~~~dVf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~----~~GIipRal~~LF~~~~~~-~~~~~~~V  373 (860)
                      +.....+.+||.++.|+|+++++|||+||||||||||||||||+|++.    ++|||||++++||+.+... ...+.|.|
T Consensus        91 f~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v  170 (376)
T 2rep_A           91 FPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSF  170 (376)
T ss_dssp             ECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEE
T ss_pred             cCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEE
Confidence            222333456888889999999999999999999999999999999753    6899999999999999874 35689999


Q ss_pred             EEEEEEEeccccccccCCCC---CCCceEEEec--CCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCC
Q 037169          374 SVSALEVYNEQIRDLLDTSP---TSKKLEIRQA--SEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSR  448 (860)
Q Consensus       374 ~vS~lEIYnE~i~DLL~~~~---~~~~l~i~~~--~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSR  448 (860)
                      +|||+|||||.|+|||++.+   ....+.++++  +.++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||
T Consensus       171 ~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSR  250 (376)
T 2rep_A          171 VASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSR  250 (376)
T ss_dssp             EEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGG
T ss_pred             EEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCC
Confidence            99999999999999998642   2356888888  578899999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEEeeccCCceeEeeEEEeecCCcccccccccch----hchHHHhHhhhhHHHHHHHHHHhccCCCcccCCC
Q 037169          449 SHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQG----ERLKEAQNINRSLSALGDVISSLATKSGHIPYRN  524 (860)
Q Consensus       449 SH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g----~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRd  524 (860)
                      ||+||+|+|.+.+...+....|+|+|||||||||..++++.|    +|++|+.+||+||++||+||.||+.+..||||||
T Consensus       251 SH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRd  330 (376)
T 2rep_A          251 SHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRN  330 (376)
T ss_dssp             SEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGGG
T ss_pred             ceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcC
Confidence            999999999998877777888999999999999999999999    9999999999999999999999999999999999


Q ss_pred             CcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhhcc
Q 037169          525 SKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV  570 (860)
Q Consensus       525 SKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~I  570 (860)
                      ||||+||||+||||++|+||+||||+..+++||++||+||+|++++
T Consensus       331 SkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~  376 (376)
T 2rep_A          331 SKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC  376 (376)
T ss_dssp             SHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999864

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.6e-83  Score=715.44  Aligned_cols=313  Identities=35%  Similarity=0.535  Sum_probs=243.2

Q ss_pred             cCCCeEEEEEeCCCCchhhhCCCceEEE--------------------ecCCCCCccceeEEEEecc-chhhHHHhhCCc
Q 037169          265 VLGNIRVFCRCRPLSKEEASAGHAMVVD--------------------FSAAKDGELGILTVDVFAD-ASPLVTSVLDGY  323 (860)
Q Consensus       265 ~~gnIrV~~RvRP~~~~E~~~~~~~~v~--------------------~~~~~~~~~~~~~~dVf~~-v~plV~~~l~G~  323 (860)
                      ..|||||+|||||+++.|...+...++.                    |.++..+.....+.+||.. +.|+|+++++||
T Consensus        19 ~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~   98 (388)
T 3bfn_A           19 PPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQ   98 (388)
T ss_dssp             CCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTC
T ss_pred             CCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCc
Confidence            3499999999999999886543332221                    2222223333344567775 899999999999


Q ss_pred             cEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh---cCCceEEEEEEEEEEeccccccccCCCCCCCceEE
Q 037169          324 NVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER---KETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEI  400 (860)
Q Consensus       324 N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~---~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i  400 (860)
                      |+||||||||||||||||+|+++++|||||++.+||+.+...   ...+.|.|+|||+|||||.|+|||++.  ...+.|
T Consensus        99 N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~--~~~l~i  176 (388)
T 3bfn_A           99 NASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPA--SGDLVI  176 (388)
T ss_dssp             CEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCS--SCBCCC
T ss_pred             eeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccC--CCCceE
Confidence            999999999999999999999999999999999999999763   346899999999999999999999853  457999


Q ss_pred             EecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC-CceeEeeEEEeecCC
Q 037169          401 RQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN-GECTKSKLWLVDLAG  479 (860)
Q Consensus       401 ~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~-~~~~~skL~lVDLAG  479 (860)
                      ++++.++++|+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+... .....|+|+||||||
T Consensus       177 red~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~lVDLAG  256 (388)
T 3bfn_A          177 REDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAG  256 (388)
T ss_dssp             EECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEEEEEEECCC
T ss_pred             EEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEEEEECCC
Confidence            9999999999999999999999999999999999999999999999999999999999876543 345789999999999


Q ss_pred             cccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHH
Q 037169          480 SERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLS  559 (860)
Q Consensus       480 SEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~  559 (860)
                      |||..++++.|.|++|+.+||+||++||+||.||+.+..||||||||||+||||+||||++|+||+||||+..+++||++
T Consensus       257 SEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETls  336 (388)
T 3bfn_A          257 SEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVS  336 (388)
T ss_dssp             TTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHH
T ss_pred             CcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccccccc
Q 037169          560 SLNFASRVRGVELSPARKQI  579 (860)
Q Consensus       560 TL~fA~r~r~I~~~p~~~~~  579 (860)
                      ||+||+|++.|++.|..+..
T Consensus       337 TLrfA~rak~I~n~p~~n~~  356 (388)
T 3bfn_A          337 ALNFAARSKEVINRPFTNES  356 (388)
T ss_dssp             HHHHHCSEEEEC--------
T ss_pred             HHHHHHHHhhCcCcCcccCC
Confidence            99999999999999987754

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=100.00  E-value=5.4e-83  Score=707.46  Aligned_cols=307  Identities=44%  Similarity=0.654  Sum_probs=250.8

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEE------------------------ecCCCCCccceeEEEEeccchhhHHHhhC
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVD------------------------FSAAKDGELGILTVDVFADASPLVTSVLD  321 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~------------------------~~~~~~~~~~~~~~dVf~~v~plV~~~l~  321 (860)
                      .|||||||||||+++.|...+...++.                        |.++..+.....+.+||.++.|+|+++++
T Consensus         4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv~~~l~   83 (349)
T 3t0q_A            4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEIRQLVQSSLD   83 (349)
T ss_dssp             -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHHHHHHHGGGT
T ss_pred             CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHHHHHHHHHHC
Confidence            599999999999999887665444332                        22222222223335678788999999999


Q ss_pred             CccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEeccccccccCCCC-------
Q 037169          322 GYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRDLLDTSP-------  393 (860)
Q Consensus       322 G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~DLL~~~~-------  393 (860)
                      |||+||||||||||||||||+|+  ++|||||++++||+.+... ...+.|.|+|||+|||||.|+|||++..       
T Consensus        84 G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~  161 (349)
T 3t0q_A           84 GYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDE  161 (349)
T ss_dssp             TCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC----------
T ss_pred             CcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccccc
Confidence            99999999999999999999997  4699999999999998864 4468999999999999999999998643       


Q ss_pred             --CCCceEEEecC-CCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEe
Q 037169          394 --TSKKLEIRQAS-EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKS  470 (860)
Q Consensus       394 --~~~~l~i~~~~-~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~s  470 (860)
                        ....+.|++++ .++++|+|++++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|+|.+.+...+....|
T Consensus       162 ~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~  241 (349)
T 3t0q_A          162 ILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQG  241 (349)
T ss_dssp             -----CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTCCEEEE
T ss_pred             ccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCCeeEE
Confidence              24567788765 467999999999999999999999999999999999999999999999999999999888888999


Q ss_pred             eEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCC---cccCCCCcchhhcccccCCCcceeEEEec
Q 037169          471 KLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLTHLLQDSLGGDSKTLMFLQI  547 (860)
Q Consensus       471 kL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~---hVPYRdSKLT~LLqdsLgGnskT~mI~~V  547 (860)
                      +|+|||||||||..++++.|+|++|+.+||+||++||+||.||+.+..   ||||||||||+||||+||||++|+||+||
T Consensus       242 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~v  321 (349)
T 3t0q_A          242 KLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNI  321 (349)
T ss_dssp             EEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEE
T ss_pred             EEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEe
Confidence            999999999999999999999999999999999999999999987654   99999999999999999999999999999


Q ss_pred             CCCCCCHHhHHHHHHHHHHhhcccccc
Q 037169          548 SPSEQDLGETLSSLNFASRVRGVELSP  574 (860)
Q Consensus       548 SP~~~~~~ETl~TL~fA~r~r~I~~~p  574 (860)
                      ||+..+++||++||+||+|++.|+.+|
T Consensus       322 sP~~~~~~ETl~TL~fA~rv~~ik~~~  348 (349)
T 3t0q_A          322 PPDPNHISETLNSLRFASKVNSTKIAK  348 (349)
T ss_dssp             CCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred             CCchhhHHHHHHHHHHHHHhhhcccCC
Confidence            999999999999999999999998775

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=100.00  E-value=2.9e-83  Score=703.03  Aligned_cols=303  Identities=42%  Similarity=0.628  Sum_probs=278.2

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEEe-------------cCCCCCccceeEEEEecc-chhhHHHhhCCccEEEEeec
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVDF-------------SAAKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFAYG  331 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~-------------~~~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~IfaYG  331 (860)
                      .|||||||||||+++.|...+...++.+             .++..+.....+.+||.+ +.|+|+++++|||+||||||
T Consensus         6 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYG   85 (325)
T 1bg2_A            6 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYG   85 (325)
T ss_dssp             SCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEECCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEEC
Confidence            4999999999999999987665544433             333333334445677877 68999999999999999999


Q ss_pred             cCCCCccccccCCCC---CCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCCCce
Q 037169          332 QTGTGKTFTMEGTQQ---NRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH  408 (860)
Q Consensus       332 qTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~g~~  408 (860)
                      ||||||||||+|+..   ++|||||++++||+.+......+.|.|+|||+|||||+|+|||++  ....+.+++++.+++
T Consensus        86 qTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~--~~~~l~i~e~~~~~~  163 (325)
T 1bg2_A           86 QTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDV--SKTNLSVHEDKNRVP  163 (325)
T ss_dssp             STTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCT--TCCSBCEEECTTSCE
T ss_pred             CCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccC--CCCCceEEECCCCCE
Confidence            999999999999754   459999999999999998888899999999999999999999985  346799999999999


Q ss_pred             EecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCccccccccc
Q 037169          409 HVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEV  488 (860)
Q Consensus       409 ~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~  488 (860)
                      +|.|++++.|.|++|++.+|..|.++|++++|.+|.+|||||+||+|+|.+.+...+....|+|+|||||||||..++++
T Consensus       164 ~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~  243 (325)
T 1bg2_A          164 YVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGA  243 (325)
T ss_dssp             EETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCCCCCCSS
T ss_pred             EecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEECCCCCcccccCC
Confidence            99999999999999999999999999999999999999999999999999988877778899999999999999999999


Q ss_pred             chhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhh
Q 037169          489 QGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR  568 (860)
Q Consensus       489 ~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r  568 (860)
                      .|.|++|+.+||+||++||+||.||+.+..||||||||||+||||+||||++|+||+||||+..+++||++||+||+|||
T Consensus       244 ~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak  323 (325)
T 1bg2_A          244 EGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAK  323 (325)
T ss_dssp             SCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSC
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q 037169          569 GV  570 (860)
Q Consensus       569 ~I  570 (860)
                      +|
T Consensus       324 ~I  325 (325)
T 1bg2_A          324 TI  325 (325)
T ss_dssp             CC
T ss_pred             cC
Confidence            86

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=100.00  E-value=8e-83  Score=706.74  Aligned_cols=312  Identities=40%  Similarity=0.646  Sum_probs=284.9

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEEecCCC-----------------CCccceeEEEEecc-chhhHHHhhCCccEEE
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVDFSAAK-----------------DGELGILTVDVFAD-ASPLVTSVLDGYNVCI  327 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~-----------------~~~~~~~~~dVf~~-v~plV~~~l~G~N~~I  327 (860)
                      .|||||+|||||+++.|...+...++.+....                 .+.....+.+||.. +.|+|+++++|||+||
T Consensus         5 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ti   84 (355)
T 1goj_A            5 ANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTV   84 (355)
T ss_dssp             SCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEE
T ss_pred             CCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceE
Confidence            48999999999999999877766666554321                 12222233457764 8999999999999999


Q ss_pred             EeeccCCCCccccccCC----CCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEec
Q 037169          328 FAYGQTGTGKTFTMEGT----QQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQA  403 (860)
Q Consensus       328 faYGqTGSGKTyTM~G~----~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~  403 (860)
                      ||||||||||||||+|+    +.++|||||++++||+.+......+.|.|+|||+|||||.|+|||++.  ...+.++++
T Consensus        85 fAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~--~~~l~i~e~  162 (355)
T 1goj_A           85 FAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ--NDNLPVHEE  162 (355)
T ss_dssp             EEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTT--CCSCCEEEE
T ss_pred             EEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCc--cCCceeEEc
Confidence            99999999999999996    466899999999999999887788999999999999999999999853  457899999


Q ss_pred             CCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcccc
Q 037169          404 SEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERL  483 (860)
Q Consensus       404 ~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~  483 (860)
                      +.++++|+|++++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|+|.+.+...+....|+|+|||||||||.
T Consensus       163 ~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~  242 (355)
T 1goj_A          163 KNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKV  242 (355)
T ss_dssp             TTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCSCC
T ss_pred             CCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEECCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999888888888999999999999999


Q ss_pred             cccccchhchHHHhHhhhhHHHHHHHHHHhccC-CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHH
Q 037169          484 AKTEVQGERLKEAQNINRSLSALGDVISSLATK-SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLN  562 (860)
Q Consensus       484 ~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~-~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~  562 (860)
                      .++++.|.+++|+.+||+||++||+||.||+.+ ..||||||||||+||||+||||++|+||+||||+..+++||++||+
T Consensus       243 ~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~  322 (355)
T 1goj_A          243 GKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLR  322 (355)
T ss_dssp             TTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHH
T ss_pred             cccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHHH
Confidence            999999999999999999999999999999975 5899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccccccccc
Q 037169          563 FASRVRGVELSPARKQI  579 (860)
Q Consensus       563 fA~r~r~I~~~p~~~~~  579 (860)
                      ||+|++.|++.|..+..
T Consensus       323 fA~rak~I~n~~~vn~~  339 (355)
T 1goj_A          323 FGMRAKSIKNKAKVNAE  339 (355)
T ss_dssp             HHHHHHTCBCCCCCCSS
T ss_pred             HHHHHhhccCCceeCCC
Confidence            99999999999987754

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.8e-82  Score=702.51  Aligned_cols=313  Identities=38%  Similarity=0.549  Sum_probs=271.9

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEE----------------EecCCCCCccceeEEEEecc-chhhHHHhhCCccEEEE
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVV----------------DFSAAKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIF  328 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v----------------~~~~~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~If  328 (860)
                      .|+|||||||||++..|...+...++                .|.++..+.....+.+||.. +.|+|+++++|||+|||
T Consensus         3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tif   82 (349)
T 1t5c_A            3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIF   82 (349)
T ss_dssp             CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETTSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECCCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCcccee
Confidence            59999999999999988754433221                12233333333445678877 57999999999999999


Q ss_pred             eeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCCCce
Q 037169          329 AYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH  408 (860)
Q Consensus       329 aYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~g~~  408 (860)
                      |||||||||||||+|+++++|||||++++||+.+... ....|.|+|||+|||||.|+|||++.+..+.+.|++++.+++
T Consensus        83 AYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~~  161 (349)
T 1t5c_A           83 AYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNV  161 (349)
T ss_dssp             EEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGC-TTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTEE
T ss_pred             eecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhC-cCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCCE
Confidence            9999999999999999999999999999999999764 357899999999999999999998776677899999999999


Q ss_pred             EecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC-----CceeEeeEEEeecCCcccc
Q 037169          409 HVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN-----GECTKSKLWLVDLAGSERL  483 (860)
Q Consensus       409 ~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~-----~~~~~skL~lVDLAGSEr~  483 (860)
                      +|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|...+...     +....|+|+|||||||||.
T Consensus       162 ~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~  241 (349)
T 1t5c_A          162 YVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERA  241 (349)
T ss_dssp             EETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGGT
T ss_pred             EecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCccc
Confidence            99999999999999999999999999999999999999999999999998876432     3457899999999999999


Q ss_pred             cccccchhchHHHhHhhhhHHHHHHHHHHhccCC--CcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHH
Q 037169          484 AKTEVQGERLKEAQNINRSLSALGDVISSLATKS--GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSL  561 (860)
Q Consensus       484 ~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~--~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL  561 (860)
                      .++++.|.|++|+.+||+||++||+||.+|+.++  .||||||||||+||||+||||++|+||+||||.  +++||++||
T Consensus       242 ~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL  319 (349)
T 1t5c_A          242 AQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTAL  319 (349)
T ss_dssp             C-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHH
T ss_pred             cccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHHH
Confidence            9999999999999999999999999999999764  699999999999999999999999999999997  689999999


Q ss_pred             HHHHHhhcccccccccccCh
Q 037169          562 NFASRVRGVELSPARKQIDI  581 (860)
Q Consensus       562 ~fA~r~r~I~~~p~~~~~~~  581 (860)
                      +||+|++.|++.|..+....
T Consensus       320 ~fA~rak~I~n~~~vn~~~~  339 (349)
T 1t5c_A          320 QFASTAKYMKNTPYVNEVST  339 (349)
T ss_dssp             HHHHHHTTCCCCCCCCEEC-
T ss_pred             HHHHHHhhcccCceeccCCC
Confidence            99999999999999876543

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.1e-82  Score=706.14  Aligned_cols=301  Identities=40%  Similarity=0.593  Sum_probs=242.3

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEec--------C------------------------------CCCCccceeEEEE
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFS--------A------------------------------AKDGELGILTVDV  308 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~--------~------------------------------~~~~~~~~~~~dV  308 (860)
                      |||||+|||||++..|...+...++...        +                              +..+.....+.+|
T Consensus        10 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~V   89 (355)
T 3lre_A           10 HHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEV   89 (355)
T ss_dssp             --CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHHHH
T ss_pred             CCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChHHH
Confidence            9999999999999999877665444321        1                              1111111122456


Q ss_pred             ecc-chhhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEecccccc
Q 037169          309 FAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRD  387 (860)
Q Consensus       309 f~~-v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~D  387 (860)
                      |.. +.|+|+++++|||+||||||||||||||||+|++.++|||||++.+||+.+........|.|.|||+|||||.|+|
T Consensus        90 y~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i~D  169 (355)
T 3lre_A           90 FEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRD  169 (355)
T ss_dssp             HHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEEEE
Confidence            666 5899999999999999999999999999999999999999999999999999888888999999999999999999


Q ss_pred             ccCCCCCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC---
Q 037169          388 LLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN---  464 (860)
Q Consensus       388 LL~~~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~---  464 (860)
                      ||++   ...+.+++++.++++|+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+...   
T Consensus       170 LL~~---~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~  246 (355)
T 3lre_A          170 LLVN---SGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASIN  246 (355)
T ss_dssp             SSSC---CCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCTT
T ss_pred             CcCC---CCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCCC
Confidence            9974   3579999999999999999999999999999999999999999999999999999999999999876532   


Q ss_pred             CceeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccC---CCcccCCCCcchhhcccccCCCcce
Q 037169          465 GECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATK---SGHIPYRNSKLTHLLQDSLGGDSKT  541 (860)
Q Consensus       465 ~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~---~~hVPYRdSKLT~LLqdsLgGnskT  541 (860)
                      .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+++   ..||||||||||+||||+|||||+|
T Consensus       247 ~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt  326 (355)
T 3lre_A          247 QNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQT  326 (355)
T ss_dssp             CCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEE
T ss_pred             CCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceE
Confidence            3346799999999999999999999999999999999999999999999874   4599999999999999999999999


Q ss_pred             eEEEecCCCCCCHHhHHHHHHHHHHhhcc
Q 037169          542 LMFLQISPSEQDLGETLSSLNFASRVRGV  570 (860)
Q Consensus       542 ~mI~~VSP~~~~~~ETl~TL~fA~r~r~I  570 (860)
                      +||+||||+..+++||++||+||+|||+|
T Consensus       327 ~mIa~isP~~~~~~ETl~TL~fA~rak~I  355 (355)
T 3lre_A          327 IMIAAVSPSSVFYDDTYNTLKYANRAKDI  355 (355)
T ss_dssp             EEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred             EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999976

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=100.00  E-value=3.7e-82  Score=718.73  Aligned_cols=316  Identities=39%  Similarity=0.586  Sum_probs=259.8

Q ss_pred             cCCCeEEEEEeCCCCchhhhCCCceEEEecCCCC-----------------------CccceeE----------------
Q 037169          265 VLGNIRVFCRCRPLSKEEASAGHAMVVDFSAAKD-----------------------GELGILT----------------  305 (860)
Q Consensus       265 ~~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~~-----------------------~~~~~~~----------------  305 (860)
                      ..|||||||||||+++.|...+...++.++....                       .....|+                
T Consensus        36 ~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~a  115 (443)
T 2owm_A           36 PGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYA  115 (443)
T ss_dssp             CCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCC
T ss_pred             CCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccCC
Confidence            4589999999999999998777655555433110                       0011122                


Q ss_pred             --EEEecc-chhhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh---cCCceEEEEEEEEE
Q 037169          306 --VDVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER---KETFTYSISVSALE  379 (860)
Q Consensus       306 --~dVf~~-v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~---~~~~~~~V~vS~lE  379 (860)
                        .+||.. +.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+...   ..++.|.|+|||+|
T Consensus       116 sQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~lE  195 (443)
T 2owm_A          116 TQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFE  195 (443)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEEE
T ss_pred             CHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEEE
Confidence              234554 479999999999999999999999999999999999999999999999999864   34689999999999


Q ss_pred             EeccccccccCCCC---CCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEE
Q 037169          380 VYNEQIRDLLDTSP---TSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCIS  456 (860)
Q Consensus       380 IYnE~i~DLL~~~~---~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~  456 (860)
                      ||||.|+|||++..   ....|.|++++.++++|.|++++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|+
T Consensus       196 IYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~  275 (443)
T 2owm_A          196 VYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIM  275 (443)
T ss_dssp             EETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEE
T ss_pred             EECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEE
Confidence            99999999998632   234699999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecc----CCceeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCC---------------
Q 037169          457 VKAKNLI----NGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKS---------------  517 (860)
Q Consensus       457 v~~~~~~----~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~---------------  517 (860)
                      |.+....    ......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+.+.               
T Consensus       276 v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~  355 (443)
T 2owm_A          276 LKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRG  355 (443)
T ss_dssp             EEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC-----------------
T ss_pred             EEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccccc
Confidence            9875421    233567999999999999999999999999999999999999999999998643               


Q ss_pred             -------CcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhhcccccccccccChH
Q 037169          518 -------GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDIS  582 (860)
Q Consensus       518 -------~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~~~  582 (860)
                             .||||||||||+||||+||||++|+||+||||+  +++||++||+||+|++.|++.|..+.++..
T Consensus       356 ~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d~~  425 (443)
T 2owm_A          356 RTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGV  425 (443)
T ss_dssp             --------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC---
T ss_pred             cccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecccCCc
Confidence                   389999999999999999999999999999997  699999999999999999999999886543

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=100.00  E-value=3.9e-82  Score=699.75  Aligned_cols=308  Identities=46%  Similarity=0.659  Sum_probs=253.3

Q ss_pred             CCCeEEEEEeCCCCc-hhhhCCCceEE------------------------EecCCCCCccceeEEEEeccchhhHHHhh
Q 037169          266 LGNIRVFCRCRPLSK-EEASAGHAMVV------------------------DFSAAKDGELGILTVDVFADASPLVTSVL  320 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~-~E~~~~~~~~v------------------------~~~~~~~~~~~~~~~dVf~~v~plV~~~l  320 (860)
                      .|||||||||||+++ .|........+                        .|.++..+.....+.+||.++.|+|++++
T Consensus         2 k~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l   81 (347)
T 1f9v_A            2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSL   81 (347)
T ss_dssp             -CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHHHHHHGGGG
T ss_pred             CCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHHHHHHHHhc
Confidence            499999999999987 34221111111                        12222222222333567877899999999


Q ss_pred             CCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhc-CCceEEEEEEEEEEeccccccccCCCCC-----
Q 037169          321 DGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK-ETFTYSISVSALEVYNEQIRDLLDTSPT-----  394 (860)
Q Consensus       321 ~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~-~~~~~~V~vS~lEIYnE~i~DLL~~~~~-----  394 (860)
                      +|||+||||||||||||||||+|+  ++|||||++++||+.+.... ..+.|.|+|||+|||||.|+|||++...     
T Consensus        82 ~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~  159 (347)
T 1f9v_A           82 DGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT  159 (347)
T ss_dssp             GTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC---------
T ss_pred             CCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCcccccccc
Confidence            999999999999999999999996  47999999999999998643 4689999999999999999999986543     


Q ss_pred             --CCceEEEecC-CCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEee
Q 037169          395 --SKKLEIRQAS-EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK  471 (860)
Q Consensus       395 --~~~l~i~~~~-~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~sk  471 (860)
                        ...+.+++++ .++++|.|++++.|.+++|++.+|..|.++|++++|.||.+|||||+||+|+|.+.+...+....|+
T Consensus       160 ~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~sk  239 (347)
T 1f9v_A          160 SIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGT  239 (347)
T ss_dssp             ----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEEE
T ss_pred             ccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCceeeeE
Confidence              2357788764 5789999999999999999999999999999999999999999999999999999887778888999


Q ss_pred             EEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCC---CcccCCCCcchhhcccccCCCcceeEEEecC
Q 037169          472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKS---GHIPYRNSKLTHLLQDSLGGDSKTLMFLQIS  548 (860)
Q Consensus       472 L~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~---~hVPYRdSKLT~LLqdsLgGnskT~mI~~VS  548 (860)
                      |+|||||||||..++++.|.|++|+.+||+||++||+||.||+.+.   .||||||||||+||||+||||++|+||+|||
T Consensus       240 L~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vs  319 (347)
T 1f9v_A          240 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNIS  319 (347)
T ss_dssp             EEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEEC
T ss_pred             EEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEeC
Confidence            9999999999999999999999999999999999999999999865   8999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHHHHHhhccccccc
Q 037169          549 PSEQDLGETLSSLNFASRVRGVELSPA  575 (860)
Q Consensus       549 P~~~~~~ETl~TL~fA~r~r~I~~~p~  575 (860)
                      |+..+++||++||+||+|+++|+++|.
T Consensus       320 P~~~~~~ETl~TLrfA~r~~~i~~~~r  346 (347)
T 1f9v_A          320 PSSSHINETLNSLRFASKVNSTRLVSR  346 (347)
T ss_dssp             CSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred             CccccHHHHHHHHHHHHHHhhhccCCC
Confidence            999999999999999999999998874

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=100.00  E-value=1.5e-82  Score=705.95  Aligned_cols=311  Identities=39%  Similarity=0.614  Sum_probs=257.6

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEEecCC-----------------------CCCccceeEEEEecc-chhhHHHhhC
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVDFSAA-----------------------KDGELGILTVDVFAD-ASPLVTSVLD  321 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~-----------------------~~~~~~~~~~dVf~~-v~plV~~~l~  321 (860)
                      .|||||||||||++..|...+...++.+++.                       ..+.....+.+||.+ +.|+|+++++
T Consensus         7 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~   86 (359)
T 1x88_A            7 GKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIM   86 (359)
T ss_dssp             --CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHhC
Confidence            4999999999999999987766555544332                       111222223456766 5899999999


Q ss_pred             CccEEEEeeccCCCCccccccCCCC-----------CCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccC
Q 037169          322 GYNVCIFAYGQTGTGKTFTMEGTQQ-----------NRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLD  390 (860)
Q Consensus       322 G~N~~IfaYGqTGSGKTyTM~G~~~-----------~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~  390 (860)
                      |||+||||||||||||||||+|++.           .+|||||++++||+.+..  ..+.|.|+|||+|||||.|+|||+
T Consensus        87 G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~DLL~  164 (359)
T 1x88_A           87 GYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLN  164 (359)
T ss_dssp             TCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEEEETTC
T ss_pred             CCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc--cCceEEEEEEEEEEeCceeeehhc
Confidence            9999999999999999999999753           369999999999998864  468999999999999999999998


Q ss_pred             CCCC-CCceEEEecCC--CceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc-CC-
Q 037169          391 TSPT-SKKLEIRQASE--GFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI-NG-  465 (860)
Q Consensus       391 ~~~~-~~~l~i~~~~~--g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~-~~-  465 (860)
                      +.+. ...+.+++++.  ++++|+|++++.|.|++|++.+|..|..+|++++|.||.+|||||+||+|+|...... ++ 
T Consensus       165 ~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~  244 (359)
T 1x88_A          165 PSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE  244 (359)
T ss_dssp             TTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSC
T ss_pred             ccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCC
Confidence            7543 36799999874  7899999999999999999999999999999999999999999999999999876432 22 


Q ss_pred             -ceeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEE
Q 037169          466 -ECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF  544 (860)
Q Consensus       466 -~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI  544 (860)
                       ....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+.+..||||||||||+||||+||||++|+||
T Consensus       245 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI  324 (359)
T 1x88_A          245 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSII  324 (359)
T ss_dssp             EEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEEEEE
T ss_pred             ceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCeEEEE
Confidence             2457999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCHHhHHHHHHHHHHhhcccccccccc
Q 037169          545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQ  578 (860)
Q Consensus       545 ~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~  578 (860)
                      +||||+..+++||++||+||+|++.|++.|..++
T Consensus       325 a~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~  358 (359)
T 1x88_A          325 ATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ  358 (359)
T ss_dssp             EEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred             EEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence            9999999999999999999999999999998764

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=100.00  E-value=2.9e-82  Score=704.66  Aligned_cols=312  Identities=43%  Similarity=0.675  Sum_probs=265.4

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEEecCC-----------------------CCCccceeEEEEecc-chhhHHHhhC
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVDFSAA-----------------------KDGELGILTVDVFAD-ASPLVTSVLD  321 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~-----------------------~~~~~~~~~~dVf~~-v~plV~~~l~  321 (860)
                      .+||||||||||+++.|...+...++.++..                       ..+.....+.+||.+ +.|+|+++++
T Consensus        20 ~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~   99 (372)
T 3b6u_A           20 SESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQ   99 (372)
T ss_dssp             -CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHHT
T ss_pred             CCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhC
Confidence            4999999999999999987766555544321                       111111222456766 6899999999


Q ss_pred             CccEEEEeeccCCCCccccccCCC---CCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCce
Q 037169          322 GYNVCIFAYGQTGTGKTFTMEGTQ---QNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKL  398 (860)
Q Consensus       322 G~N~~IfaYGqTGSGKTyTM~G~~---~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l  398 (860)
                      |||+||||||||||||||||+|+.   +++|||||++++||..+.. ...+.|.|+|||+|||||.|+|||++.+ .+.+
T Consensus       100 G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~-~~~l  177 (372)
T 3b6u_A          100 GFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR-SQNQQYLVRASYLEIYQEEIRDLLSKDQ-TKRL  177 (372)
T ss_dssp             TCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHT-CSSCEEEEEEEEEEEETTEEEETTSSCT-TCCB
T ss_pred             CCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhh-ccCCceEEEEEEEEEeCCEEEECCCCCC-CCCc
Confidence            999999999999999999999964   4579999999999999986 4568999999999999999999998643 4579


Q ss_pred             EEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc---CCceeEeeEEEe
Q 037169          399 EIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI---NGECTKSKLWLV  475 (860)
Q Consensus       399 ~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~---~~~~~~skL~lV  475 (860)
                      .+++++.++++|+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|...+..   ......|+|+||
T Consensus       178 ~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lV  257 (372)
T 3b6u_A          178 ELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLV  257 (372)
T ss_dssp             CEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEE
T ss_pred             eEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999886532   234578999999


Q ss_pred             ecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCC-CcccCCCCcchhhcccccCCCcceeEEEecCCCCCCH
Q 037169          476 DLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKS-GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDL  554 (860)
Q Consensus       476 DLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~  554 (860)
                      |||||||..++++.|.|++|+.+||+||++||+||.||++++ .||||||||||+||||+||||++|+||+||||+..++
T Consensus       258 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~  337 (372)
T 3b6u_A          258 DLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNV  337 (372)
T ss_dssp             ECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGH
T ss_pred             ECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCH
Confidence            999999999999999999999999999999999999998754 6999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhccccccccccc
Q 037169          555 GETLSSLNFASRVRGVELSPARKQI  579 (860)
Q Consensus       555 ~ETl~TL~fA~r~r~I~~~p~~~~~  579 (860)
                      +||++||+||+|++.|++.|..+..
T Consensus       338 ~ETlsTLrfA~rak~I~n~~~~n~~  362 (372)
T 3b6u_A          338 EETLTTLRYANRAKNIKNKPRVNED  362 (372)
T ss_dssp             HHHHHHHHHHHHHTTCBCCCCCCC-
T ss_pred             HHHHHHHHHHHHHhhccccceecCC
Confidence            9999999999999999999988764

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=100.00  E-value=1.6e-81  Score=699.39  Aligned_cols=311  Identities=37%  Similarity=0.581  Sum_probs=257.6

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEEecCC--------------------CCCccc--------eeEEEEecc-chhhH
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVDFSAA--------------------KDGELG--------ILTVDVFAD-ASPLV  316 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~--------------------~~~~~~--------~~~~dVf~~-v~plV  316 (860)
                      .+||||||||||++..|...+...++.++..                    ..+...        ..+.+||.+ +.|+|
T Consensus         3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv   82 (366)
T 2zfi_A            3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML   82 (366)
T ss_dssp             -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred             CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence            5899999999999999987665544433221                    111000        223456666 47999


Q ss_pred             HHhhCCccEEEEeeccCCCCccccccCCC--CCCCchhhHHHHHHHHHHHhc-CCceEEEEEEEEEEeccccccccCCCC
Q 037169          317 TSVLDGYNVCIFAYGQTGTGKTFTMEGTQ--QNRGVNYRTLELLFKIAEERK-ETFTYSISVSALEVYNEQIRDLLDTSP  393 (860)
Q Consensus       317 ~~~l~G~N~~IfaYGqTGSGKTyTM~G~~--~~~GIipRal~~LF~~~~~~~-~~~~~~V~vS~lEIYnE~i~DLL~~~~  393 (860)
                      +++++|||+||||||||||||||||+|++  .++|||||++++||+.+.... ..+.|.|+|||+|||||.|+|||++..
T Consensus        83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~  162 (366)
T 2zfi_A           83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN  162 (366)
T ss_dssp             HHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred             HHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence            99999999999999999999999999984  578999999999999998653 468999999999999999999998643


Q ss_pred             CCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCC----ceeE
Q 037169          394 TSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING----ECTK  469 (860)
Q Consensus       394 ~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~----~~~~  469 (860)
                       ...+.|++++.++++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+......    ....
T Consensus       163 -~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~  241 (366)
T 2zfi_A          163 -KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV  241 (366)
T ss_dssp             -CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEE
T ss_pred             -CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeE
Confidence             35799999999999999999999999999999999999999999999999999999999999987654322    2457


Q ss_pred             eeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc------------CCCcccCCCCcchhhcccccCC
Q 037169          470 SKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT------------KSGHIPYRNSKLTHLLQDSLGG  537 (860)
Q Consensus       470 skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~------------~~~hVPYRdSKLT~LLqdsLgG  537 (860)
                      |+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+.            +..||||||||||+||||+|||
T Consensus       242 skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgG  321 (366)
T 2zfi_A          242 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG  321 (366)
T ss_dssp             EEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSST
T ss_pred             eEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999986            3579999999999999999999


Q ss_pred             CcceeEEEecCCCCCCHHhHHHHHHHHHHhhccccccccc
Q 037169          538 DSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARK  577 (860)
Q Consensus       538 nskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~  577 (860)
                      |++|+||+||||+..+++||++||+||+||+.|++.|...
T Consensus       322 nskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~  361 (366)
T 2zfi_A          322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN  361 (366)
T ss_dssp             TCEEEEEEEECCBGGGHHHHHHHHHHHHHTC---------
T ss_pred             CceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCC
Confidence            9999999999999999999999999999999999988754

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=100.00  E-value=3.6e-81  Score=692.03  Aligned_cols=302  Identities=40%  Similarity=0.641  Sum_probs=250.1

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEEec---------------CCCCCccceeEEEEecc-chhhHHHhhCCccEEEEe
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVDFS---------------AAKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFA  329 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~~---------------~~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~Ifa  329 (860)
                      .++|||+|||||+++.|...+...++...               ++..+.....+.+||.. +.|+|+++++|||+||||
T Consensus        10 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifA   89 (344)
T 4a14_A           10 EAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFA   89 (344)
T ss_dssp             CCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEETTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEE
T ss_pred             ccceEEEEEecccchHHHhccCeeEEEEcCCCceEEecccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEE
Confidence            58999999999999999876655544332               22223333344667877 799999999999999999


Q ss_pred             eccCCCCccccccCC------CCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEec
Q 037169          330 YGQTGTGKTFTMEGT------QQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQA  403 (860)
Q Consensus       330 YGqTGSGKTyTM~G~------~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~  403 (860)
                      ||||||||||||+|+      ++++|||||++++||+.+... ..+.|.|+|||+|||||.|+|||++.+..+.+.++++
T Consensus        90 YGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~e~  168 (344)
T 4a14_A           90 YGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN-DLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRED  168 (344)
T ss_dssp             ESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC-TTSEEEEEEEEEEEETTEEEETTSSCCCGGGCEEEEC
T ss_pred             ecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc-cceeeEEEEehhhhhHHHHHHHHHhccccccceeeec
Confidence            999999999999997      467999999999999999875 4679999999999999999999997777788999999


Q ss_pred             CCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc--------CCceeEeeEEEe
Q 037169          404 SEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI--------NGECTKSKLWLV  475 (860)
Q Consensus       404 ~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~--------~~~~~~skL~lV  475 (860)
                      +.++++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+..        .+....|+|+||
T Consensus       169 ~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl~lV  248 (344)
T 4a14_A          169 ERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFV  248 (344)
T ss_dssp             TTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEEEEEEEEE
T ss_pred             cCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeeeeeeEE
Confidence            999999999999999999999999999999999999999999999999999999886532        234567999999


Q ss_pred             ecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccC---CCcccCCCCcchhhcccccCCCcceeEEEecCCCCC
Q 037169          476 DLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATK---SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQ  552 (860)
Q Consensus       476 DLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~---~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~  552 (860)
                      |||||||..++++.|.|++|+.+||+||++||+||.||+++   ..||||||||||+||||+||||++|+||+||||+..
T Consensus       249 DLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~  328 (344)
T 4a14_A          249 DLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSS  328 (344)
T ss_dssp             ECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECCBGG
T ss_pred             ecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCCCcc
Confidence            99999999999999999999999999999999999999863   469999999999999999999999999999999999


Q ss_pred             CHHhHHHHHHHHHHhh
Q 037169          553 DLGETLSSLNFASRVR  568 (860)
Q Consensus       553 ~~~ETl~TL~fA~r~r  568 (860)
                      +++||++||+||+|||
T Consensus       329 ~~~ETl~TL~fA~rAk  344 (344)
T 4a14_A          329 DFDETLNTLNYASRAQ  344 (344)
T ss_dssp             GHHHHHHHHHHHHHTC
T ss_pred             chhHHhhhhhhhhhcC
Confidence            9999999999999986

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=100.00  E-value=4.5e-81  Score=692.91  Aligned_cols=303  Identities=41%  Similarity=0.631  Sum_probs=239.6

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEecCCC---------------CCccceeE-------------------EEEecc-
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK---------------DGELGILT-------------------VDVFAD-  311 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~---------------~~~~~~~~-------------------~dVf~~-  311 (860)
                      .||||+|||||+++.|...+...++..+...               ......+.                   .+||.. 
T Consensus         1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~   80 (354)
T 3gbj_A            1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL   80 (354)
T ss_dssp             -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred             CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence            4899999999999999876555444332210               00011122                   234444 


Q ss_pred             chhhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEeccccccccC
Q 037169          312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRDLLD  390 (860)
Q Consensus       312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~DLL~  390 (860)
                      +.|+|+++++|||+||||||||||||||||+|+++++|||||++++||..+... ...+.|.|+|||+|||||.|+|||+
T Consensus        81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~  160 (354)
T 3gbj_A           81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD  160 (354)
T ss_dssp             HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred             hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence            479999999999999999999999999999999999999999999999988753 4568999999999999999999998


Q ss_pred             CCCCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc----CCc
Q 037169          391 TSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI----NGE  466 (860)
Q Consensus       391 ~~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~----~~~  466 (860)
                      +....+.+.+++++.++++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+....    ...
T Consensus       161 ~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~  240 (354)
T 3gbj_A          161 PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSG  240 (354)
T ss_dssp             ------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEE
T ss_pred             CCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCC
Confidence            7666678999999999999999999999999999999999999999999999999999999999999875322    122


Q ss_pred             eeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc------CCCcccCCCCcchhhcccccCCCcc
Q 037169          467 CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT------KSGHIPYRNSKLTHLLQDSLGGDSK  540 (860)
Q Consensus       467 ~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~------~~~hVPYRdSKLT~LLqdsLgGnsk  540 (860)
                      ...|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+.      +..||||||||||+||||+|||||+
T Consensus       241 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnsk  320 (354)
T 3gbj_A          241 EKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSK  320 (354)
T ss_dssp             EEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCE
T ss_pred             eeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCe
Confidence            4579999999999999999999999999999999999999999999985      4579999999999999999999999


Q ss_pred             eeEEEecCCCCCCHHhHHHHHHHHHHhhc
Q 037169          541 TLMFLQISPSEQDLGETLSSLNFASRVRG  569 (860)
Q Consensus       541 T~mI~~VSP~~~~~~ETl~TL~fA~r~r~  569 (860)
                      |+||+||||+..+++||++||+||.+|+.
T Consensus       321 t~mIa~vsP~~~~~~ETlsTLr~a~~~~~  349 (354)
T 3gbj_A          321 TAMVATVSPAADNYDETLSTLRYADRAKH  349 (354)
T ss_dssp             EEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred             EEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999985

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=100.00  E-value=2e-81  Score=699.76  Aligned_cols=312  Identities=40%  Similarity=0.602  Sum_probs=255.3

Q ss_pred             cCCCeEEEEEeCCCCchhhhCCCceEEEecC--------------------CCCCccceeEEEEecc-chhhHHHhhCCc
Q 037169          265 VLGNIRVFCRCRPLSKEEASAGHAMVVDFSA--------------------AKDGELGILTVDVFAD-ASPLVTSVLDGY  323 (860)
Q Consensus       265 ~~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~--------------------~~~~~~~~~~~dVf~~-v~plV~~~l~G~  323 (860)
                      ..+||||||||||++..|...+...++.+..                    +..+.....+.+||.. +.|+|+++++||
T Consensus        21 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~  100 (373)
T 2wbe_C           21 SNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGY  100 (373)
T ss_dssp             CCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCc
Confidence            3489999999999999987655444444322                    1112222233567766 789999999999


Q ss_pred             cEEEEeeccCCCCccccccCCCC-----------CCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCC
Q 037169          324 NVCIFAYGQTGTGKTFTMEGTQQ-----------NRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTS  392 (860)
Q Consensus       324 N~~IfaYGqTGSGKTyTM~G~~~-----------~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~  392 (860)
                      |+||||||||||||||||+|++.           ++|||||++++||+.+...  .+.|.|+|||+|||||.|+|||++.
T Consensus       101 n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE~i~DLL~~~  178 (373)
T 2wbe_C          101 NCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM--EVEYTMRISYLELYNEELCDLLSTD  178 (373)
T ss_dssp             CEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC--CSCEEEEEEEEEEETTEEEESSCTT
T ss_pred             eEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc--CceEEEEEEEEEEeCCeEEECCCCC
Confidence            99999999999999999999764           6799999999999999764  4689999999999999999999864


Q ss_pred             CCCCceEEEecC--CCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc-C--Cce
Q 037169          393 PTSKKLEIRQAS--EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI-N--GEC  467 (860)
Q Consensus       393 ~~~~~l~i~~~~--~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~-~--~~~  467 (860)
                      + ...+.+++++  .|+++|+|++++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|.|...... .  ...
T Consensus       179 ~-~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~  257 (373)
T 2wbe_C          179 D-TTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDML  257 (373)
T ss_dssp             S-CSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEE
T ss_pred             C-CCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcce
Confidence            3 3467788774  57899999999999999999999999999999999999999999999999999875422 1  234


Q ss_pred             eEeeEEEeecCCcccccccccc-hhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEe
Q 037169          468 TKSKLWLVDLAGSERLAKTEVQ-GERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ  546 (860)
Q Consensus       468 ~~skL~lVDLAGSEr~~~t~~~-g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~  546 (860)
                      ..|+|+|||||||||..++++. |.|++|+.+||+||++||+||.||+.+..||||||||||+||||+||||++|+||+|
T Consensus       258 ~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~  337 (373)
T 2wbe_C          258 KIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIAT  337 (373)
T ss_dssp             EEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEEEEEEE
T ss_pred             eEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceEEEEEE
Confidence            5799999999999999999987 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHhHHHHHHHHHHhhccccccccccc
Q 037169          547 ISPSEQDLGETLSSLNFASRVRGVELSPARKQI  579 (860)
Q Consensus       547 VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~  579 (860)
                      |||+..+++||++||+||+|++.|++.|..+..
T Consensus       338 isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~  370 (373)
T 2wbe_C          338 ISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQK  370 (373)
T ss_dssp             ECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEE
T ss_pred             eCCCcccHHHHHHHHHHHHHHhhccccceeccc
Confidence            999999999999999999999999999987753

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=100.00  E-value=7.9e-80  Score=683.49  Aligned_cols=304  Identities=32%  Similarity=0.439  Sum_probs=256.6

Q ss_pred             CeEEEEEeCCCCchhhhCCCceEEEec--------------------------CCCCCccceeEEEEecc-chhhHHHhh
Q 037169          268 NIRVFCRCRPLSKEEASAGHAMVVDFS--------------------------AAKDGELGILTVDVFAD-ASPLVTSVL  320 (860)
Q Consensus       268 nIrV~~RvRP~~~~E~~~~~~~~v~~~--------------------------~~~~~~~~~~~~dVf~~-v~plV~~~l  320 (860)
                      ||||||||||+++.|...+...++.+.                          ++..+.....+.+||.+ +.|+|++++
T Consensus         1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~   80 (360)
T 1ry6_A            1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY   80 (360)
T ss_dssp             CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred             CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence            799999999999999876654444332                          11122222233456765 789999999


Q ss_pred             C-CccEEEEeeccCCCCccccccCCC-----CCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCC
Q 037169          321 D-GYNVCIFAYGQTGTGKTFTMEGTQ-----QNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPT  394 (860)
Q Consensus       321 ~-G~N~~IfaYGqTGSGKTyTM~G~~-----~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~  394 (860)
                      + ||||||||||||||||||||+|++     .++|||||++++||..+......+.|.|+|||+|||||.|+|||++.  
T Consensus        81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~--  158 (360)
T 1ry6_A           81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR--  158 (360)
T ss_dssp             HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred             cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCC--
Confidence            6 999999999999999999999984     67999999999999999887777899999999999999999999753  


Q ss_pred             CCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEE
Q 037169          395 SKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWL  474 (860)
Q Consensus       395 ~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~l  474 (860)
                       +.+.+++++.++++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|...+   .....|+|+|
T Consensus       159 -~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~---~~~~~skL~l  234 (360)
T 1ry6_A          159 -KMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSLGKIAF  234 (360)
T ss_dssp             -----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT---TTEEEEEEEE
T ss_pred             -ccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc---CCcceeEEEE
Confidence             356788899999999999999999999999999999999999999999999999999999998643   3467899999


Q ss_pred             eecCCcccccccccch-hchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCC
Q 037169          475 VDLAGSERLAKTEVQG-ERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQD  553 (860)
Q Consensus       475 VDLAGSEr~~~t~~~g-~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~  553 (860)
                      ||||||||..++++.| .+++|+.+||+||++||+||.||+.+..||||||||||+||||+|||||+|+||+||||+..+
T Consensus       235 VDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~  314 (360)
T 1ry6_A          235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISC  314 (360)
T ss_dssp             EECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGG
T ss_pred             EECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCccc
Confidence            9999999999999876 578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHhhccccccccc
Q 037169          554 LGETLSSLNFASRVRGVELSPARK  577 (860)
Q Consensus       554 ~~ETl~TL~fA~r~r~I~~~p~~~  577 (860)
                      ++||++||+||+|+++|++.|..+
T Consensus       315 ~~ETlsTLrfA~rak~i~n~~~~~  338 (360)
T 1ry6_A          315 CEQTLNTLRYSSRVKNKGNSKLEG  338 (360)
T ss_dssp             HHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHHHHHHhhcccCcccC
Confidence            999999999999999999977644

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=100.00  E-value=4.3e-80  Score=693.19  Aligned_cols=308  Identities=33%  Similarity=0.456  Sum_probs=245.1

Q ss_pred             hhhhccCCCeEEEEEeCCCCchhhhCCCceEEEecC--------------------------CCCCccceeEEEEecc-c
Q 037169          260 VSTIQVLGNIRVFCRCRPLSKEEASAGHAMVVDFSA--------------------------AKDGELGILTVDVFAD-A  312 (860)
Q Consensus       260 ~~~~~~~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~--------------------------~~~~~~~~~~~dVf~~-v  312 (860)
                      +++..+.+||||||||||++..|...+...++.+..                          +..+.....+.+||.. +
T Consensus        64 ~~~~~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~  143 (410)
T 1v8k_A           64 VTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTA  143 (410)
T ss_dssp             TTCTTSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTT
T ss_pred             cCCcCCCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHH
Confidence            344445799999999999999998766544443322                          1112222223456665 6


Q ss_pred             hhhHHHhhCCccEEEEeeccCCCCccccccCCC------CCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEecccc
Q 037169          313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ------QNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQI  385 (860)
Q Consensus       313 ~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~------~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i  385 (860)
                      .|+|+++++|||+||||||||||||||||+|+.      .++||+||++.+||..+... ...+.|.|+|||+|||||.|
T Consensus       144 ~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i  223 (410)
T 1v8k_A          144 RPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKV  223 (410)
T ss_dssp             HHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEE
T ss_pred             HHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEE
Confidence            899999999999999999999999999999963      46899999999999988643 24678999999999999999


Q ss_pred             ccccCCCCCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCC
Q 037169          386 RDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING  465 (860)
Q Consensus       386 ~DLL~~~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~  465 (860)
                      +|||++   ...+.+++++.++++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|....    
T Consensus       224 ~DLL~~---~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~----  296 (410)
T 1v8k_A          224 FDLLNK---KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG----  296 (410)
T ss_dssp             EETTTT---TEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS----
T ss_pred             EECCCC---CCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC----
Confidence            999984   3579999999999999999999999999999999999999999999999999999999999998652    


Q ss_pred             ceeEeeEEEeecCCcccccccc-cchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccc-cCCCcceeE
Q 037169          466 ECTKSKLWLVDLAGSERLAKTE-VQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS-LGGDSKTLM  543 (860)
Q Consensus       466 ~~~~skL~lVDLAGSEr~~~t~-~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqds-LgGnskT~m  543 (860)
                       ...|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.||+.+..||||||||||+||||| |||||+|+|
T Consensus       297 -~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllGgnskT~m  375 (410)
T 1v8k_A          297 -RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCM  375 (410)
T ss_dssp             -SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEE
T ss_pred             -cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccCCCceEEE
Confidence             367999999999999998876 46788899999999999999999999999999999999999999999 699999999


Q ss_pred             EEecCCCCCCHHhHHHHHHHHHHhhccccccc
Q 037169          544 FLQISPSEQDLGETLSSLNFASRVRGVELSPA  575 (860)
Q Consensus       544 I~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~  575 (860)
                      |+||||+..+++||++||+||+||+.|.-.|.
T Consensus       376 Ia~iSP~~~~~~ETlsTLrfA~rak~i~~~~~  407 (410)
T 1v8k_A          376 IAMISPGISSCEYTLNTLRYADRVKELSHHHH  407 (410)
T ss_dssp             EEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred             EEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence            99999999999999999999999999987663

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=100.00  E-value=6.9e-80  Score=687.59  Aligned_cols=307  Identities=33%  Similarity=0.458  Sum_probs=243.0

Q ss_pred             hhhhhccCCCeEEEEEeCCCCchhhhCCCceEEEec--------------------------CCCCCccceeEEEEecc-
Q 037169          259 MVSTIQVLGNIRVFCRCRPLSKEEASAGHAMVVDFS--------------------------AAKDGELGILTVDVFAD-  311 (860)
Q Consensus       259 ~~~~~~~~gnIrV~~RvRP~~~~E~~~~~~~~v~~~--------------------------~~~~~~~~~~~~dVf~~-  311 (860)
                      .+++..+.+||||||||||+++.|...+...++.+.                          ++..+.....+.+||.. 
T Consensus        43 ~~~~~~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~  122 (387)
T 2heh_A           43 TMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFT  122 (387)
T ss_dssp             CTTSCCCCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHT
T ss_pred             ccCCCCCCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhh
Confidence            344555679999999999999999876654444332                          11122222223456765 


Q ss_pred             chhhHHHhhCCccEEEEeeccCCCCccccccCCC------CCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEeccc
Q 037169          312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ------QNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQ  384 (860)
Q Consensus       312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~------~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~  384 (860)
                      +.|+|+++++|||+||||||||||||||||+|+.      .++||+||++++||..+... ...+.|.|+|||+|||||.
T Consensus       123 ~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~  202 (387)
T 2heh_A          123 ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGK  202 (387)
T ss_dssp             THHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTE
T ss_pred             HHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCe
Confidence            6899999999999999999999999999999963      56899999999999988653 2457899999999999999


Q ss_pred             cccccCCCCCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC
Q 037169          385 IRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN  464 (860)
Q Consensus       385 i~DLL~~~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~  464 (860)
                      |+|||++   ...+.+++++.++++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|...    
T Consensus       203 v~DLL~~---~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----  275 (387)
T 2heh_A          203 LFDLLNK---KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK----  275 (387)
T ss_dssp             EEETTTT---TEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS----
T ss_pred             EEECCCC---CccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC----
Confidence            9999984   357999999999999999999999999999999999999999999999999999999999999864    


Q ss_pred             CceeEeeEEEeecCCcccccccc-cchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccc-cCCCccee
Q 037169          465 GECTKSKLWLVDLAGSERLAKTE-VQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS-LGGDSKTL  542 (860)
Q Consensus       465 ~~~~~skL~lVDLAGSEr~~~t~-~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqds-LgGnskT~  542 (860)
                       ....|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.||+.+..||||||||||+||||+ |||||+|+
T Consensus       276 -~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllGgnskT~  354 (387)
T 2heh_A          276 -GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTC  354 (387)
T ss_dssp             -SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSSTTEEEE
T ss_pred             -CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccCCCCeEE
Confidence             2467999999999999998876 46788899999999999999999999999999999999999999999 59999999


Q ss_pred             EEEecCCCCCCHHhHHHHHHHHHHhhccccc
Q 037169          543 MFLQISPSEQDLGETLSSLNFASRVRGVELS  573 (860)
Q Consensus       543 mI~~VSP~~~~~~ETl~TL~fA~r~r~I~~~  573 (860)
                      ||+||||+..+++||++||+||+||++|++.
T Consensus       355 mIa~isP~~~~~~ETlsTLrfA~rak~I~~~  385 (387)
T 2heh_A          355 MIATISPGISSCEYTLNTLRYADRVKELSPH  385 (387)
T ss_dssp             EEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred             EEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence            9999999999999999999999999999764

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.6e-80  Score=683.91  Aligned_cols=304  Identities=38%  Similarity=0.584  Sum_probs=239.2

Q ss_pred             ccCCCeEEEEEeCCCCchhhhC----CCceEEE--------------------ecCCCCCccceeEEEEecc-chhhHHH
Q 037169          264 QVLGNIRVFCRCRPLSKEEASA----GHAMVVD--------------------FSAAKDGELGILTVDVFAD-ASPLVTS  318 (860)
Q Consensus       264 ~~~gnIrV~~RvRP~~~~E~~~----~~~~~v~--------------------~~~~~~~~~~~~~~dVf~~-v~plV~~  318 (860)
                      ...|||||||||||++..|...    .....+.                    |.++..++ ...+.+||.+ +.|+|++
T Consensus        21 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~   99 (359)
T 3nwn_A           21 GTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQ   99 (359)
T ss_dssp             ---CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHH
T ss_pred             CCCCCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHHH
Confidence            3459999999999998766431    1111121                    22222221 1223457766 5899999


Q ss_pred             hhCCccEEEEeeccCCCCccccccCCCC---CCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCC--
Q 037169          319 VLDGYNVCIFAYGQTGTGKTFTMEGTQQ---NRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSP--  393 (860)
Q Consensus       319 ~l~G~N~~IfaYGqTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~--  393 (860)
                      +|+|||+||||||||||||||||+|++.   ++|||||++++||+.+... ..+.|.|+|||+|||||.|+|||++.+  
T Consensus       100 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~  178 (359)
T 3nwn_A          100 ALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEER-PTHAITVRVSYLEIYNESLFDLLSTLPYV  178 (359)
T ss_dssp             HHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTC-TTSCEEEEEEEEEEETTEEEETTSSSTTS
T ss_pred             HhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcC-CCCcEEEEEEEEEEecccccccccccccc
Confidence            9999999999999999999999999764   4899999999999988764 457899999999999999999998643  


Q ss_pred             --CCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc--CCceeE
Q 037169          394 --TSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI--NGECTK  469 (860)
Q Consensus       394 --~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~--~~~~~~  469 (860)
                        ....+.+++++.| ++|+|++++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|......  .+....
T Consensus       179 ~~~~~~~~~~~~~~g-~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~  257 (359)
T 3nwn_A          179 GPSVTPMTIVENPQG-VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYIT  257 (359)
T ss_dssp             CTTTSCCEEEEETTE-EEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEE
T ss_pred             ccccccceEEecCCc-eEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCccccc
Confidence              2455778887754 88999999999999999999999999999999999999999999999999775432  344568


Q ss_pred             eeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc-CCCcccCCCCcchhhcccccCCCcceeEEEecC
Q 037169          470 SKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQIS  548 (860)
Q Consensus       470 skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~-~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VS  548 (860)
                      |+|+|||||||||..++++.|.|++|+.+||+||++||+||.||++ +..||||||||||+||||+|||||+|+||+|||
T Consensus       258 skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~is  337 (359)
T 3nwn_A          258 SKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIY  337 (359)
T ss_dssp             EEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEEC
T ss_pred             ccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeC
Confidence            9999999999999999999999999999999999999999999986 457999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHHHHHhhcc
Q 037169          549 PSEQDLGETLSSLNFASRVRGV  570 (860)
Q Consensus       549 P~~~~~~ETl~TL~fA~r~r~I  570 (860)
                      |+..+++||++||+||+|||.|
T Consensus       338 P~~~~~~ETlsTL~fA~rak~I  359 (359)
T 3nwn_A          338 GEAAQLEETLSSLRFASRMKLV  359 (359)
T ss_dssp             CSGGGHHHHHHHHHHHTTGGGC
T ss_pred             CchhhHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999986

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=100.00  E-value=1.6e-77  Score=661.33  Aligned_cols=297  Identities=33%  Similarity=0.471  Sum_probs=231.0

Q ss_pred             ccCCCeEEEEEeCCCCchhhhCCCceEEEecC----------------CCCCccceeEEEEecc-chhhHHHhhCCccEE
Q 037169          264 QVLGNIRVFCRCRPLSKEEASAGHAMVVDFSA----------------AKDGELGILTVDVFAD-ASPLVTSVLDGYNVC  326 (860)
Q Consensus       264 ~~~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~----------------~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~  326 (860)
                      ...++|||+|||||+.+.|.. +...++.+..                +..+.....+.+||.+ +.|+|+++++|||+|
T Consensus        19 ~~~~~VrV~vRvRP~~~~e~~-~~~~~v~~~~~~~~~~~~~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~t   97 (344)
T 3dc4_A           19 AKLSAVRIAVREAPYRQFLGR-REPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCT   97 (344)
T ss_dssp             CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEE
T ss_pred             CCCCCeEEEEECCCCCccccc-CCceEEEecCCCCCceEEecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceE
Confidence            456999999999999887643 2333344332                2223333344567777 789999999999999


Q ss_pred             EEeeccCCCCccccccCCC------CCCCchhhHHHHHHHHHHHhcC--CceEEEEEEEEEEeccccccccCCCCCCCce
Q 037169          327 IFAYGQTGTGKTFTMEGTQ------QNRGVNYRTLELLFKIAEERKE--TFTYSISVSALEVYNEQIRDLLDTSPTSKKL  398 (860)
Q Consensus       327 IfaYGqTGSGKTyTM~G~~------~~~GIipRal~~LF~~~~~~~~--~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l  398 (860)
                      |||||||||||||||+|++      +++|||||++++||+.+.....  .+.|.|+|||+|||||+|+|||++.+..+.+
T Consensus        98 ifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~  177 (344)
T 3dc4_A           98 ALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMV  177 (344)
T ss_dssp             EEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTSBCC
T ss_pred             EEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCCccc
Confidence            9999999999999999874      5689999999999999987543  3579999999999999999999865432211


Q ss_pred             EEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecC
Q 037169          399 EIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLA  478 (860)
Q Consensus       399 ~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLA  478 (860)
                              ...+.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|...      ...|+|+|||||
T Consensus       178 --------~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~skl~lVDLA  243 (344)
T 3dc4_A          178 --------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------THHSRMNIVDLA  243 (344)
T ss_dssp             --------SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------SCEEEEEEEECC
T ss_pred             --------cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------CcEEEEEEEECC
Confidence                    223568999999999999999999999999999999999999999999999753      357999999999


Q ss_pred             CcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHH
Q 037169          479 GSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETL  558 (860)
Q Consensus       479 GSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl  558 (860)
                      ||||..++++.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||+||||++|+||+||||+..+++||+
T Consensus       244 GSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl  323 (344)
T 3dc4_A          244 GSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETL  323 (344)
T ss_dssp             CCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHH
T ss_pred             CCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccc
Q 037169          559 SSLNFASRVRGVELSPA  575 (860)
Q Consensus       559 ~TL~fA~r~r~I~~~p~  575 (860)
                      +||+||+||+.....|+
T Consensus       324 sTL~fA~ra~~~~~~~~  340 (344)
T 3dc4_A          324 STLRFGTSAKAAALEHH  340 (344)
T ss_dssp             HHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHhhcCCCCC
Confidence            99999999998876654

>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}

Probab=100.00  E-value=1e-73  Score=689.11  Aligned_cols=305  Identities=43%  Similarity=0.650  Sum_probs=242.4

Q ss_pred             CCCeEEEEEeC----CCCchhhhCCCc-eEE---------------------------EecCCCCCccceeEEEEeccch
Q 037169          266 LGNIRVFCRCR----PLSKEEASAGHA-MVV---------------------------DFSAAKDGELGILTVDVFADAS  313 (860)
Q Consensus       266 ~gnIrV~~RvR----P~~~~E~~~~~~-~~v---------------------------~~~~~~~~~~~~~~~dVf~~v~  313 (860)
                      ++++|||||||    |.+..|.+.|.. ..+                           .|.++..+.....+.+||..+.
T Consensus       373 l~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~  452 (715)
T 4h1g_A          373 KGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEELS  452 (715)
T ss_dssp             SCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGGTH
T ss_pred             HhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHHHH
Confidence            59999999999    444433332211 111                           1333333334444567888899


Q ss_pred             hhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEeccccccccCCC
Q 037169          314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRDLLDTS  392 (860)
Q Consensus       314 plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~DLL~~~  392 (860)
                      |+|+++++|||+||||||||||||||||+|+  ++|||||++++||+.+... ...+.|.|+|||+|||||.|+|||++.
T Consensus       453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~~  530 (715)
T 4h1g_A          453 QLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPK  530 (715)
T ss_dssp             HHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSCC
T ss_pred             HHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCCC
Confidence            9999999999999999999999999999995  5799999999999998864 446799999999999999999999864


Q ss_pred             CC-CCceEEEec-CCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEe
Q 037169          393 PT-SKKLEIRQA-SEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKS  470 (860)
Q Consensus       393 ~~-~~~l~i~~~-~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~s  470 (860)
                      .. ...+.++++ ..|.++|.|++++.|.|++|++.+|..|.++|++++|.+|.+|||||+||+|+|.+.+...+....|
T Consensus       531 ~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~~~~~~~  610 (715)
T 4h1g_A          531 IDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYG  610 (715)
T ss_dssp             CCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTTCCEEEE
T ss_pred             CCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCCCCEeEE
Confidence            32 445666654 4577999999999999999999999999999999999999999999999999999998888888899


Q ss_pred             eEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc-CCCcccCCCCcchhhcccccCCCcceeEEEecCC
Q 037169          471 KLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISP  549 (860)
Q Consensus       471 kL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~-~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP  549 (860)
                      +|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+. +..|||||||||||||||||||||+|+||+||||
T Consensus       611 ~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp  690 (715)
T 4h1g_A          611 TLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISP  690 (715)
T ss_dssp             EEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECC
T ss_pred             EEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEEEECC
Confidence            999999999999999999999999999999999999999999985 4589999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHHHHHhhcccc
Q 037169          550 SEQDLGETLSSLNFASRVRGVEL  572 (860)
Q Consensus       550 ~~~~~~ETl~TL~fA~r~r~I~~  572 (860)
                      +..+++||++||+||+|+|+|++
T Consensus       691 ~~~~~~et~~tL~fa~r~~~i~~  713 (715)
T 4h1g_A          691 LTKDLNETINSLRFATKVNNTRI  713 (715)
T ss_dssp             BGGGHHHHHHHHHHHHHHCC---
T ss_pred             ChhhHHHHHHHHHHHHHhcccee
Confidence            99999999999999999999963

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9

Probab=99.94  E-value=7.1e-28  Score=219.59  Aligned_cols=85  Identities=45%  Similarity=0.621  Sum_probs=80.2

Q ss_pred             HhHhhhhHHHHHHHHHHhccC-CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhhcccccc
Q 037169          496 AQNINRSLSALGDVISSLATK-SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSP  574 (860)
Q Consensus       496 ~~~INkSL~aLg~vI~aL~~~-~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p  574 (860)
                      +.+||+||++||+||.+|+.+ ..||||||||||+||+|+||||++|+||+||||+..+++||++||+||+|++.|++.|
T Consensus         1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~   80 (100)
T 2kin_B            1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV   80 (100)
T ss_dssp             CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence            357999999999999999986 6899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccC
Q 037169          575 ARKQID  580 (860)
Q Consensus       575 ~~~~~~  580 (860)
                      ..+...
T Consensus        81 ~~n~~~   86 (100)
T 2kin_B           81 SVNLEL   86 (100)
T ss_dssp             CCEEEC
T ss_pred             eeccCC
Confidence            877543

>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=9.8e-28  Score=252.71  Aligned_cols=263  Identities=13%  Similarity=0.143  Sum_probs=172.8

Q ss_pred             hhHHhhhhhccC-CCeEEEEEeCCCC-chh--hhCCCceEE------EecCCCCCccceeEE--EEeccchhhHHHhhC-
Q 037169          255 QLNKMVSTIQVL-GNIRVFCRCRPLS-KEE--ASAGHAMVV------DFSAAKDGELGILTV--DVFADASPLVTSVLD-  321 (860)
Q Consensus       255 ~~~~~~~~~~~~-gnIrV~~RvRP~~-~~E--~~~~~~~~v------~~~~~~~~~~~~~~~--dVf~~v~plV~~~l~-  321 (860)
                      ..|+|+|+|+++ |||||||||||.. +..  ..-....+.      .|.+++.+.....+.  +||.++.++|+++|+ 
T Consensus        11 ~RRkL~NsI~ELKGnIRVFcrvrp~~~p~~~~v~y~~~~I~v~~~~k~f~FDRVf~p~s~Qe~~~vf~E~~~~i~scLd~   90 (298)
T 2o0a_A           11 RSRRLENSIIEQKGTMRCYAYVMEQNLPENLLFDYENGVITQGLSEHVYKFNRVIPHLKVSEDKFFTQEYSVYHDMCLNQ   90 (298)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECGGGSCTTEEEETTTTEEEETTTCCEEECSEEEETTTSCHHHHHHHTTHHHHHHHHHT
T ss_pred             HHHHHHhHHHHhhCceEEEEEeccccCCccceeecCccceeecCCCceEEeeeEECccccccHHHHHHHHHHHHHHHHhC
Confidence            347888998887 9999999999965 322  111111111      233333333444445  799999999999999 


Q ss_pred             CccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHH-hcCCceEEEEEEEEEEe-ccccccccCCCCCCCceE
Q 037169          322 GYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEE-RKETFTYSISVSALEVY-NEQIRDLLDTSPTSKKLE  399 (860)
Q Consensus       322 G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIY-nE~i~DLL~~~~~~~~l~  399 (860)
                      |||+|||||||||||||             ||++..+|..... ..  |.|.+++||+||| ||.++|||..++.+..++
T Consensus        91 GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~--~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~e  155 (298)
T 2o0a_A           91 KKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQ--KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDS  155 (298)
T ss_dssp             TCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHH--HHEEEEEEEEEEECC-CEEETTSCCC------
T ss_pred             CCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcc--cceEEEEEEEEEecCCchHHhcCCCCCCCcce
Confidence            99999999999999999             9999999997754 33  8999999999999 999999998656555889


Q ss_pred             EEecCCCceEecCeeEEEeCC-hHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC--C-ceeEeeEEEe
Q 037169          400 IRQASEGFHHVPGLTEAKIEN-IKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN--G-ECTKSKLWLV  475 (860)
Q Consensus       400 i~~~~~g~~~v~gl~e~~V~s-~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~--~-~~~~skL~lV  475 (860)
                      |+.+.+|.+.|.|++.+.|.+ ++|+..++..+...      ..|.   +.-.|+.+.+...+...  . ....--+.|+
T Consensus       156 Ik~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~  226 (298)
T 2o0a_A          156 IKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFI  226 (298)
T ss_dssp             CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCEEEEEE
T ss_pred             EEecCCCCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCceEEEEEEecCcccccccCCCCceEEEEE
Confidence            999999999999999999999 99999888433221      1221   22455555555422111  1 1122346666


Q ss_pred             ecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHH
Q 037169          476 DLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLG  555 (860)
Q Consensus       476 DLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~  555 (860)
                      .+....                    +...|.+.+   ..+    -+-.|+++-+|+..|. ..|.++++++.-+..   
T Consensus       227 e~~~~~--------------------~~~~l~~~~---~~~----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~---  275 (298)
T 2o0a_A          227 ELNNLK--------------------SIEQFDKSI---FKK----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKN---  275 (298)
T ss_dssp             EECSHH--------------------HHHHHHHHH---HTC-----CCCSHHHHHHHHHHH-HSBCEEEEEECCGGG---
T ss_pred             EeCCHH--------------------HHHHHHhhc---ccc----cccCCcHHHHHHHHHh-cCcceEEEEecCCCc---
Confidence            654221                    123333322   112    3557888888887664 468899999976532   


Q ss_pred             hHHHHHHHHHHhhccccc
Q 037169          556 ETLSSLNFASRVRGVELS  573 (860)
Q Consensus       556 ETl~TL~fA~r~r~I~~~  573 (860)
                       .-.-|..+.++..+.+.
T Consensus       276 -~~~lL~~s~~i~~~~~~  292 (298)
T 2o0a_A          276 -VNKLLTISEEVQTQLCK  292 (298)
T ss_dssp             -HHHHHHHHHHHHHHTC-
T ss_pred             -hhHHHHHHHHhhcccCc
Confidence             23367777777766553

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9

Probab=99.93  E-value=9.2e-27  Score=218.91  Aligned_cols=81  Identities=44%  Similarity=0.630  Sum_probs=77.0

Q ss_pred             hhhHHHHHHHHHHhccC-CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhhcccccccccc
Q 037169          500 NRSLSALGDVISSLATK-SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ  578 (860)
Q Consensus       500 NkSL~aLg~vI~aL~~~-~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~  578 (860)
                      |+||++||+||.+|+.+ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++.|++.|..+.
T Consensus         1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~   80 (117)
T 3kin_B            1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL   80 (117)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence            89999999999999986 47999999999999999999999999999999999999999999999999999999998775


Q ss_pred             cC
Q 037169          579 ID  580 (860)
Q Consensus       579 ~~  580 (860)
                      ..
T Consensus        81 ~~   82 (117)
T 3kin_B           81 EL   82 (117)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.87  E-value=4.4e-22  Score=199.92  Aligned_cols=105  Identities=29%  Similarity=0.494  Sum_probs=91.1

Q ss_pred             cccccccccc--CceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECCEEEeeccchhhccCCCcceEE-EEEEE
Q 037169            2 AVLYQSARFG--NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQV-VDVRV   78 (860)
Q Consensus         2 p~lYqTaR~g--~~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing~~vl~~fDI~~~~G~~~a~~~-~~~~V   78 (860)
                      +.||+|||++  +++|.||..++|+|+|||||||+++.  .+|+|+|||+|||.+++++|||+..+|++.|+.+ +.+.|
T Consensus        54 ~~lY~TaR~~~~~~tY~f~v~~~G~Y~VrLhF~ei~~~--~~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v  131 (174)
T 2jwp_A           54 QVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFA--QSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISI  131 (174)
T ss_dssp             HHTTTCCCCCCSCEEEEEECCSCEEEEEEEEEECCSCC--CSSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEE
T ss_pred             chhhhhhccCCCCeEEEEEeCCCeEEEEEEEEeccccC--CCCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEE
Confidence            4599999996  68899976678999999999999987  6899999999999999999999998888778777 77765


Q ss_pred             ee----------CCCceEEEEEEcc-CCCcEEEEEEEeecC
Q 037169           79 SV----------GMDEVLLIRFDGA-CGSPIVNGICIKNAT  108 (860)
Q Consensus        79 ~~----------~~~g~L~I~F~~~-~g~p~InaIEI~k~~  108 (860)
                      +.          ..+|.|+|+|.|. ...|+||||||++.+
T Consensus       132 ~~~~l~i~~~~~~~~g~L~I~f~p~~~~~a~inaIEI~~~~  172 (174)
T 2jwp_A          132 KKGKLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALFIMKGT  172 (174)
T ss_dssp             ETTEEEETTEEEECCSEEEEEEECSSSCSSSEEEEEEESSC
T ss_pred             ecCceeeeeeecccCCeEEEEEeccCCCCcEEEEEEEEeCc
Confidence            31          2478999999875 677999999999875

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.74  E-value=0.11  Score=54.77  Aligned_cols=144  Identities=6%  Similarity=0.095  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhc
Q 037169          586 KVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVS--EGMKG  663 (860)
Q Consensus       586 ~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~--~~~~~  663 (860)
                      .+...+..+..........+..++..+..+...+.........++..+..++..++.....+..++.++....  ....+
T Consensus        15 ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~a   94 (256)
T 3na7_A           15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRS   94 (256)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHH
Confidence            3333333333333333344445555555555544444444555555555566666655555555555554322  11112


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 037169          664 KEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLR  731 (860)
Q Consensus       664 ~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~  731 (860)
                      ....+..+..++..++..+.+....  ++.++..+..++..+......+......+...+.+++.++.
T Consensus        95 L~kEie~~~~~i~~lE~eile~~e~--ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~  160 (256)
T 3na7_A           95 LNIEEDIAKERSNQANREIENLQNE--IKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQ  160 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233334444444444444433222  22334444444444444444444444445555554444444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.91  E-value=0.42  Score=50.20  Aligned_cols=123  Identities=18%  Similarity=0.183  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 037169          602 DDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLES--KTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELE  679 (860)
Q Consensus       602 ~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~--~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele  679 (860)
                      ...+..+...+.+++...............++...+.++..  ..+....+..++..+.......++.+..+..++..++
T Consensus        45 ~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~  124 (256)
T 3na7_A           45 NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKS  124 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444333333334444444444433321  1123333444444444433334444444444444443


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 037169          680 NKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKK  733 (860)
Q Consensus       680 ~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Q  733 (860)
                      ..+..         +...+..++..+...+..+......++.++..+..+....
T Consensus       125 ~~l~~---------~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l  169 (256)
T 3na7_A          125 EKQED---------LKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDL  169 (256)
T ss_dssp             HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322         2333333444444444444444444444444444444333

>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A

Probab=95.90  E-value=0.1  Score=49.91  Aligned_cols=94  Identities=15%  Similarity=0.202  Sum_probs=61.9

Q ss_pred             ceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECCEEEeeccchhhccCCCcceEEEEEEEeeCCCceEEEEEE-
Q 037169           13 FSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFD-   91 (860)
Q Consensus        13 ~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing~~vl~~fDI~~~~G~~~a~~~~~~~V~~~~~g~L~I~F~-   91 (860)
                      ..|.+....+|.|.|.+.|+-   .  ..+.|.++|+|||..+...+.+....+... .....+.|... .|.=+|+|. 
T Consensus        42 v~~~V~v~~aG~Y~l~~ryan---~--~~~~~~~~l~VNG~~~~~~v~~p~Tg~w~~-w~~~~~~v~L~-aG~ntI~l~~  114 (144)
T 2w47_A           42 IEWNVNAPSSGSYALIFRYAN---G--TTANRPMRITVNGNIVKPSMDFVSTGAWTT-WNEAGIVANLN-QGNNVIRATA  114 (144)
T ss_dssp             EEEEEEESSSEEEEEEEEEEC---C--SSSCCCEEEEETTEEEEEEECCCCCSSTTC-CEEEEEEEEEC-SEEEEEEEEE
T ss_pred             EEEEEECCCCcEEEEEEEEEC---C--CCCCeEEEEEECCeEeeeEEEecCCCCCCe-eEEEEEEEEEC-CCccEEEEEE
Confidence            568885445799999999985   1  235689999999997666666644444433 22233334332 455455554 


Q ss_pred             -ccCCCcEEEEEEEeecCCCCCC
Q 037169           92 -GACGSPIVNGICIKNATNVPES  113 (860)
Q Consensus        92 -~~~g~p~InaIEI~k~~~~~~~  113 (860)
                       ...+.|.|.-|+|.+.+..+++
T Consensus       115 ~~~~g~~niD~i~v~~~~~~~~~  137 (144)
T 2w47_A          115 IASDGGPNVDYLKVFSANAFQPL  137 (144)
T ss_dssp             CSTTCCCEEEEEEEEECTTSCC-
T ss_pred             eCCCCCEEEeEEEEEeCCCCCCc
Confidence             5556799999999987766554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.85  E-value=0.11  Score=60.61  Aligned_cols=28  Identities=18%  Similarity=0.167  Sum_probs=15.5

Q ss_pred             EEecCCCCCCHHhHHHHHHHHHHhhccc
Q 037169          544 FLQISPSEQDLGETLSSLNFASRVRGVE  571 (860)
Q Consensus       544 I~~VSP~~~~~~ETl~TL~fA~r~r~I~  571 (860)
                      +||-.+........+..+.....+....
T Consensus       391 ~cc~~~~~~~~~~~~~~l~~~~~~~~~~  418 (597)
T 3oja_B          391 LCCKESDKPYLDRLLQYIALTSVVEKVQ  418 (597)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHHHHTC-
T ss_pred             ccccCCCccchhHHHHHhhHHHHhhccc
Confidence            5555555555666666666555554443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=95.72  E-value=1.4  Score=44.58  Aligned_cols=10  Identities=20%  Similarity=0.109  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 037169          721 QKIAELEEKL  730 (860)
Q Consensus       721 ~qi~eLe~kl  730 (860)
                      .++..+..++
T Consensus       181 ~~~~~~~~~~  190 (284)
T 1c1g_A          181 ERAELSEGKC  190 (284)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.66  E-value=0.96  Score=44.49  Aligned_cols=98  Identities=16%  Similarity=0.206  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 037169          588 KMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEI  667 (860)
Q Consensus       588 k~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~  667 (860)
                      ..++..+...+..-.+...++.....++.......+..+.+++.++.-|+..-..+.+.+..|+.+|.+=........+.
T Consensus        12 ekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~   91 (168)
T 3o0z_A           12 QKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEM   91 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444333444555666666666555555555666666666666555555555555555555544444445555


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 037169          668 CSNVQRKVKELENKLKEH  685 (860)
Q Consensus       668 ~~~lq~~~~ele~~l~~~  685 (860)
                      +.+++.++..|...+...
T Consensus        92 ~~elq~ri~~L~~El~~~  109 (168)
T 3o0z_A           92 IGDLQARITSLQEEVKHL  109 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            566666666666555543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.59  E-value=0.27  Score=61.86  Aligned_cols=6  Identities=17%  Similarity=0.550  Sum_probs=2.4

Q ss_pred             hHHHhh
Q 037169          315 LVTSVL  320 (860)
Q Consensus       315 lV~~~l  320 (860)
                      +|..++
T Consensus       588 ~v~~lf  593 (1080)
T 2dfs_A          588 LLPELF  593 (1080)
T ss_dssp             HHHHSC
T ss_pred             HHHHHh
Confidence            344333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.42  E-value=0.11  Score=65.18  Aligned_cols=41  Identities=10%  Similarity=0.248  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 037169          695 HHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEE  735 (860)
Q Consensus       695 e~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qee  735 (860)
                      +.++..+..++++....++.+.+.|++++.+++..+.++++
T Consensus      1011 ee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A         1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444555556666666655544444

>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}

Probab=95.23  E-value=0.14  Score=49.26  Aligned_cols=92  Identities=15%  Similarity=0.246  Sum_probs=59.7

Q ss_pred             ceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECCEEEeeccchhhccCCCcceEEEEEEEeeCCCceEEEEEE-
Q 037169           13 FSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFD-   91 (860)
Q Consensus        13 ~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing~~vl~~fDI~~~~G~~~a~~~~~~~V~~~~~g~L~I~F~-   91 (860)
                      ..|.+....+|.|.|.+.|+-   .  ..+.|.++|+|||..+ ..+.+-...+... .....+.|... .|.=+|+|. 
T Consensus        41 v~~~V~v~~aG~Y~l~~ryan---g--~~~~r~~~l~VNG~~~-~~v~~p~Tg~W~~-w~t~~~~v~L~-aG~ntI~l~~  112 (145)
T 2w3j_A           41 IVWSLSAASAKTYTAQIRFGN---G--GTSARRATVVVNDSQI-KTLDFPTNSNWTQ-WQTVNVDIPLK-AGTNSIKLVA  112 (145)
T ss_dssp             EEEEEEESSCEEEEEEEEEEC---C--SSSCCCEEEEETTEEE-EEECCCCCSCTTS-CEEEEEEEEEC-SEEEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEEEEEC---C--CCCCeEEEEEECCeEe-eEEEecCCCCCCe-eEEEEEEEEEC-CCceEEEEEE
Confidence            568885445799999999983   1  3357999999999875 5566544444433 22233344432 454445554 


Q ss_pred             -ccCCCcEEEEEEEeecCCCCC
Q 037169           92 -GACGSPIVNGICIKNATNVPE  112 (860)
Q Consensus        92 -~~~g~p~InaIEI~k~~~~~~  112 (860)
                       +..+.|-|.-|+|.+.++.+.
T Consensus       113 ~~~~g~~niD~i~v~~~~~~~~  134 (145)
T 2w3j_A          113 ETADGLANIDSIRVTGNGITPA  134 (145)
T ss_dssp             CSTTCCCEEEEEEECSTTEEEC
T ss_pred             ecCcCCEEEEEEEEEcCCCCCC
Confidence             355779999999987655444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.87  E-value=0.081  Score=67.26  Aligned_cols=14  Identities=43%  Similarity=0.665  Sum_probs=7.5

Q ss_pred             HhhhhhccCCCeEE
Q 037169          258 KMVSTIQVLGNIRV  271 (860)
Q Consensus       258 ~~~~~~~~~gnIrV  271 (860)
                      +++..|--+|||..
T Consensus       353 ~ilaaiLhlGni~f  366 (1184)
T 1i84_S          353 RVVSSVLQLGNIVF  366 (1184)
T ss_dssp             HHHHHHHHTTTCCC
T ss_pred             HHHHHHHhhcCcee
Confidence            34444445677753

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.65  E-value=0.047  Score=69.42  Aligned_cols=8  Identities=38%  Similarity=0.476  Sum_probs=3.7

Q ss_pred             CCCcceeE
Q 037169          536 GGDSKTLM  543 (860)
Q Consensus       536 gGnskT~m  543 (860)
                      -|.++++|
T Consensus       768 iG~TKVF~  775 (1184)
T 1i84_S          768 IGQSKIFF  775 (1184)
T ss_dssp             BCSSEEEE
T ss_pred             EcCeEEEE
Confidence            34455443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=94.59  E-value=0.7  Score=46.41  Aligned_cols=100  Identities=21%  Similarity=0.237  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          145 AKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQ----LEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRL  220 (860)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (860)
                      +.++++..+|+.++.....++..++..+..++.+    +..+..++..    ...-...+...+.+|....-++++..|.
T Consensus        52 ~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~----l~~~~~~l~~~ireLEq~NDdlEr~~R~  127 (189)
T 2v71_A           52 VQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ----TRAIKEQLHKYVRELEQANDDLERAKRA  127 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3444444444555555555555544444444433    3333333322    2333455566667777778888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169          221 WIIAMNELERKILIWKEEHSQLAREAHE  248 (860)
Q Consensus       221 ~~~~~~~~~~~~~~~~~e~~~l~~e~~~  248 (860)
                      ....+.+++.++........-|..|+.+
T Consensus       128 ~~~SleD~e~kln~aiEr~alLE~El~E  155 (189)
T 2v71_A          128 TIMSLEDFEQRLNQAIERNAFLESELDE  155 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887777766666554

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=93.84  E-value=3.4  Score=38.81  Aligned_cols=52  Identities=29%  Similarity=0.374  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHh
Q 037169          634 NELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEH  685 (860)
Q Consensus       634 ~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~  685 (860)
                      .+++...........+|..+|..-.......++.|..+...-.+|+.++.+.
T Consensus        37 ~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el   88 (129)
T 2fxo_A           37 KELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM   88 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444455555555444555556667777666666666666543

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.36  E-value=0.37  Score=45.44  Aligned_cols=97  Identities=20%  Similarity=0.186  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          147 CEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMN  226 (860)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (860)
                      |..+++++......-.++.......+.+++..+.++..+++.+..++.+|..       .|+++...|+.........+.
T Consensus        13 y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~-------~l~e~e~~~~~~l~~~q~~i~   85 (129)
T 3tnu_B           13 YQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQN-------AIADAEQRGELALKDARNKLA   85 (129)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            6667777766665555555555666666667777777777665444444443       356777788888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhc
Q 037169          227 ELERKILIWKEEHSQLAREAHECA  250 (860)
Q Consensus       227 ~~~~~~~~~~~e~~~l~~e~~~~~  250 (860)
                      .++..+..++.+..+...|.+...
T Consensus        86 ~lE~eL~~~r~e~~~ql~EYq~Ll  109 (129)
T 3tnu_B           86 ELEEALQKAKQDMARLLREYQELM  109 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHH
Confidence            999999999988887777766543

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.14  E-value=3.7  Score=56.86  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=17.4

Q ss_pred             hHHHhhC-CccEEEEeeccCCCCccccc
Q 037169          315 LVTSVLD-GYNVCIFAYGQTGTGKTFTM  341 (860)
Q Consensus       315 lV~~~l~-G~N~~IfaYGqTGSGKTyTM  341 (860)
                      ++..++. |.+  |+-+|+||||||-++
T Consensus      1296 ll~~ll~~~~p--vLL~GptGtGKT~li 1321 (3245)
T 3vkg_A         1296 VLHAWLSEHRP--LILCGPPGSGKTMTL 1321 (3245)
T ss_dssp             HHHHHHHTTCC--CEEESSTTSSHHHHH
T ss_pred             HHHHHHHCCCc--EEEECCCCCCHHHHH
Confidence            5555554 444  467899999999655

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=93.02  E-value=3.1  Score=38.23  Aligned_cols=97  Identities=22%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          148 EKRIKELKIQCQLKTDECYEAWMSLTAA----NDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWII  223 (860)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (860)
                      +++..+|+.++....-++.+.+..+..+    +..+..+..++..+    +.-...+...+.+|+.-.-+|++..+....
T Consensus         2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~l----r~~~~~l~~~iReLEq~NDDLER~~R~t~~   77 (111)
T 2v66_B            2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT----RAIKEQLHKYVRELEQANDDLERAKRATIV   77 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhchHHHHHHHHHHh
Confidence            4556666666666666666655544444    34445555555443    333455666677777778899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169          224 AMNELERKILIWKEEHSQLAREAHE  248 (860)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~l~~e~~~  248 (860)
                      .+.+++.++........-|..|+.+
T Consensus        78 SLeD~E~k~n~aiErnalLE~El~E  102 (111)
T 2v66_B           78 SLEDFEQRLNQAIERNAFLESELDE  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888877777766554

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=92.93  E-value=0.36  Score=45.70  Aligned_cols=97  Identities=10%  Similarity=0.111  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169          147 CEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMN  226 (860)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (860)
                      |..+++++......-.+........+.+++..+.++..+++.+..++.+|..       .|+++...|+.....+...+.
T Consensus        15 y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~-------~l~e~e~~~~~~l~~~q~~i~   87 (131)
T 3tnu_A           15 FFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLEN-------SLEETKGRYCMQLAQIQEMIG   87 (131)
T ss_dssp             --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            6667777776666655555556666667777777777777665444444433       466777788888888888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhc
Q 037169          227 ELERKILIWKEEHSQLAREAHECA  250 (860)
Q Consensus       227 ~~~~~~~~~~~e~~~l~~e~~~~~  250 (860)
                      .++..+..++.+..+...|.+...
T Consensus        88 ~lE~eL~~~r~em~~ql~EYq~Ll  111 (131)
T 3tnu_A           88 SVEEQLAQLRCEMEQQNQEYKILL  111 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988887777766543

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=92.66  E-value=2.8  Score=58.06  Aligned_cols=82  Identities=9%  Similarity=0.178  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHH
Q 037169          648 RQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLK---ARTQEFEVHSGMLQQKIA  724 (860)
Q Consensus       648 ~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~---~~~~~~e~~~~~lq~qi~  724 (860)
                      .+++.+++...+++..+++.+.++++++++++.++.+...+  .+.++.+.+..+.++.   ++..-+..+..+|.+++.
T Consensus      2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~e--k~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A         2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRE--TEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence            33344444444444444444444444444444444333222  2234445544444433   333344556677888887


Q ss_pred             HHHHHHH
Q 037169          725 ELEEKLR  731 (860)
Q Consensus       725 eLe~kl~  731 (860)
                      +++.++.
T Consensus      2095 ~l~~~~~ 2101 (3245)
T 3vkg_A         2095 NFNTQMS 2101 (3245)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776655

>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*

Probab=92.66  E-value=0.69  Score=42.91  Aligned_cols=85  Identities=21%  Similarity=0.184  Sum_probs=53.1

Q ss_pred             ceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECCEEEeeccchhhccCCCcceEEEEEEEeeCCCceEEEEEE-
Q 037169           13 FSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFD-   91 (860)
Q Consensus        13 ~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing~~vl~~fDI~~~~G~~~a~~~~~~~V~~~~~g~L~I~F~-   91 (860)
                      ..|.+....+|.|.|.++++--     ..+.|.++|+|||..+...+.+-...+... .....+.|... .|.=+|+|. 
T Consensus        41 v~~~V~v~~aG~Y~l~~rya~~-----~~~~~~~~l~VnG~~~~~~v~~p~tg~W~~-w~~~~~~v~L~-aG~ntI~l~~  113 (127)
T 2vzp_A           41 VEWTVTVPSAGTYDVVVRYANG-----TTTSRPLDFSVNGSISASGVAFGSTGTWPA-WTTKTVRVTLA-AGVNKIKAVA  113 (127)
T ss_dssp             EEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEEECCCCCSSTTC-CEEEEEEEEEC-SEEEEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEEEEEcC-----CCCCeEEEEEECCEEeeeEEEecCCCCCCc-eEEEEEEEEEC-CCceEEEEEE
Confidence            5688854457999999999861     224688999999998655566644434433 22223334332 555445554 


Q ss_pred             -ccCCCcEEEEEEE
Q 037169           92 -GACGSPIVNGICI  104 (860)
Q Consensus        92 -~~~g~p~InaIEI  104 (860)
                       ...+.|-|.-|+|
T Consensus       114 ~~~~~~~niD~i~v  127 (127)
T 2vzp_A          114 TTANGGPNVDKITL  127 (127)
T ss_dssp             CSTTCCCEEEEEEC
T ss_pred             eCCCCCeEEEEEEC
Confidence             3446688887764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.43  E-value=1.5  Score=51.04  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169          695 HHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYA  737 (860)
Q Consensus       695 e~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~  737 (860)
                      +++..++|.++++.++...    .+.++...+.++++++++.+
T Consensus       543 ~~~~~~le~~~~~~~~~~~----~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          543 EQENIALEKQLDNKRAKQA----ELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTT
T ss_pred             HhhhHHHHHHHhhhhhHHH----HHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444333322    34445555555555555554

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.38  E-value=6.1  Score=37.09  Aligned_cols=53  Identities=13%  Similarity=0.166  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 037169          627 KNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELE  679 (860)
Q Consensus       627 ~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele  679 (860)
                      ..+......|..++......+.+.+..+..+.......+..+..+...+.+.+
T Consensus        44 ~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeee   96 (129)
T 2fxo_A           44 VSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEE   96 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555555444444444444444444433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=92.03  E-value=11  Score=37.80  Aligned_cols=16  Identities=25%  Similarity=0.055  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q 037169          582 SKLQKVKMMLEKTKQE  597 (860)
Q Consensus       582 ~~~~~lk~~l~~~k~e  597 (860)
                      .++.-|+......+++
T Consensus        10 ee~~ywk~~~~~~~q~   25 (189)
T 2v71_A           10 EETAYWKELSMKYKQS   25 (189)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3455565554444443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=91.48  E-value=3.9  Score=36.88  Aligned_cols=9  Identities=11%  Similarity=0.113  Sum_probs=3.4

Q ss_pred             HHHHHHHHh
Q 037169          590 MLEKTKQEV  598 (860)
Q Consensus       590 ~l~~~k~e~  598 (860)
                      .+..++.+.
T Consensus        10 Km~~lk~e~   18 (101)
T 3u1c_A           10 KMQMLKLDK   18 (101)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333344333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=90.63  E-value=14  Score=36.35  Aligned_cols=67  Identities=12%  Similarity=0.095  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Q 037169          604 VIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSN  670 (860)
Q Consensus       604 ~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~  670 (860)
                      .+..++..+.+|.............+++.+..|+.+++..+....+....+..+..++.+....+..
T Consensus        42 ~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~  108 (168)
T 3o0z_A           42 SISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKH  108 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444455555555555544444444444444444333333333333

>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=90.58  E-value=1.4  Score=47.48  Aligned_cols=235  Identities=14%  Similarity=0.178  Sum_probs=119.4

Q ss_pred             hHHhhhhhccC-CCeEEEEEeCCCCchhhhCCCceEEEecCCC---CCccceeE-------------EEEeccchhhHHH
Q 037169          256 LNKMVSTIQVL-GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK---DGELGILT-------------VDVFADASPLVTS  318 (860)
Q Consensus       256 ~~~~~~~~~~~-gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~---~~~~~~~~-------------~dVf~~v~plV~~  318 (860)
                      .++|-|.|.++ |.||+|+=+-+-..++     ...+++....   .+.-..+.             ..+|.+..+.++.
T Consensus        47 RRkLENSIdElKG~IRcFAYi~~~~~p~-----~~~idY~~~~It~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~Dm  121 (333)
T 4etp_B           47 SRRLENSIIEQKGTMRVYAYVMEQNLPE-----NLLFDYENGVITQGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDM  121 (333)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEECCSSCCS-----SCEEETTTTEEEC--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHH
T ss_pred             HHHHhhhHHHhcCcEEEEEEECcccCCc-----cEEEecccceEeecCCcceEEEeeeechhhcchHHHHHHHHHHHHHH
Confidence            35666666555 9999999886632111     1223322110   00001111             2256678999999


Q ss_pred             hh-CCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhc--CCceEEEEEEEEEEeccc-cccccCCCCC
Q 037169          319 VL-DGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK--ETFTYSISVSALEVYNEQ-IRDLLDTSPT  394 (860)
Q Consensus       319 ~l-~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~--~~~~~~V~vS~lEIYnE~-i~DLL~~~~~  394 (860)
                      ++ .+.|+.||.-|..-                .+.....|+..+....  -.+.|.+.+.|+.+-++. ..|||.+...
T Consensus       122 cL~~~~NfslIsis~~~----------------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~  185 (333)
T 4etp_B          122 ALNQKKNFNLISLSTTP----------------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSH  185 (333)
T ss_dssp             HHHTTCCEEEEEEESSC----------------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC---
T ss_pred             HHccCCCeeEEEecCCC----------------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccccc
Confidence            99 89999999998541                1223444555554330  036889999998887665 6899986432


Q ss_pred             CC----ceEEEecCCCceEecCeeEEEeCChHHHHHHHhhh-hhcCccccCCCCCCCCCceEEEEEEEEEeecc-CC--c
Q 037169          395 SK----KLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIG-SNARAVGSNNVNEHSSRSHCMLCISVKAKNLI-NG--E  466 (860)
Q Consensus       395 ~~----~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g-~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~-~~--~  466 (860)
                      ..    .+.+.++   .+. -+-+.+.+.+..+.+..+..- ...+        .. ...-.|+.+.+...+.. ++  .
T Consensus       186 ~~~~~I~lkiee~---sI~-ldS~~i~i~~~~~~l~~~~kl~~~~~--------~~-~~GI~IlKfqf~~~~~~~~~n~~  252 (333)
T 4etp_B          186 NDKDSIKLKFEKH---SIS-LDSKLVIIENGLEDLPLNFSADEHPN--------LP-HSGMGIIKVQFFPRDSKSDGNND  252 (333)
T ss_dssp             -------CEEETT---EEE-CCSCCEEESSGGGGSCTTSSCCC-----------------CEEEEEEEEECC--------
T ss_pred             cCCCCceEEeecc---eEe-ecceEEEeccccccchhhhccccCCC--------CC-CCCceEEEEEEEecCcccccccC
Confidence            21    2222221   111 133445555554433332211 1011        01 12345666666554322 11  1


Q ss_pred             eeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEe
Q 037169          467 CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ  546 (860)
Q Consensus       467 ~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~  546 (860)
                      ...-..+||.+-+..                    ....|.++|.-    .   -.-.|+++-+|+-.|. ..|.+++.+
T Consensus       253 ~~~~~fYFiEi~~~~--------------------ti~~l~~~i~~----~---~~~~spi~~ilkkLl~-~TKS~flfn  304 (333)
T 4etp_B          253 PVPVDFYFIELNNLK--------------------SIEQFDKSIFK----K---ESAETPIALVLKKLIS-DTKSFFLLN  304 (333)
T ss_dssp             CCCEEEEEEEECSHH--------------------HHHHHHSCC-----------CCCCHHHHHHHHHHH-HSBCEEEEE
T ss_pred             CcceeEEEEEecChh--------------------HHHHHHhhcCc----c---cccCCCHHHHHHHHHh-hCcceEEEE
Confidence            123468888876543                    12233333221    1   1345677777776554 468899999


Q ss_pred             cCCCCC
Q 037169          547 ISPSEQ  552 (860)
Q Consensus       547 VSP~~~  552 (860)
                      +.-...
T Consensus       305 l~~~~~  310 (333)
T 4etp_B          305 LNDSKN  310 (333)
T ss_dssp             ECCSTT
T ss_pred             cCCcch
Confidence            976643

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=90.56  E-value=13  Score=36.06  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 037169          693 ALHHKVRELENRLKARTQEFEVHSGMLQQKIAE  725 (860)
Q Consensus       693 ~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~e  725 (860)
                      .|++.+..+|.++...+..+......|...+.+
T Consensus       102 kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~e  134 (155)
T 2efr_A          102 KLEKSIDDLEDELYAQKLKYKAISEEMKQLEDK  134 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666655555444444444444443333

>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A

Probab=90.42  E-value=1.1  Score=42.67  Aligned_cols=89  Identities=12%  Similarity=0.187  Sum_probs=56.0

Q ss_pred             ceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECCEEE-eeccchhhccCCCcceEEEEEEEeeCCCceEEEEEE
Q 037169           13 FSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKV-LLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFD   91 (860)
Q Consensus        13 ~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing~~v-l~~fDI~~~~G~~~a~~~~~~~V~~~~~g~L~I~F~   91 (860)
                      ..|.+.....|.|.|.+.|+-   .  ..+.|.++|+|||..+ ...+.+-...+... .....+.|... .|.=+|+|.
T Consensus        41 v~~~V~v~~aG~Y~l~~ryan---g--~~~~r~~~l~VNG~~~g~~~v~~p~Tg~W~~-w~t~~~~v~L~-aG~ntI~l~  113 (139)
T 2w87_A           41 VVWAIDATSSGRRTLTIRYAN---G--GTANRNGSLVINGGSNGNYTVSLPTTGAWTT-WQTATIDVDLV-QGNNIVQLS  113 (139)
T ss_dssp             EEEEEEESSCEEEEEEEEEEC---C--SSSCCCEEEEETTTTTCEEEECCCCCSSTTC-CEEEEEEEEEC-SEEEEEEEE
T ss_pred             EEEEEECCCCcEEEEEEEEEC---C--CCCCceEEEEECCEEcceeEEEecCCCCCCc-cEEEEEEEEEC-CCceEEEEE
Confidence            568885445799999999975   1  2236889999999765 35566644444433 22223344432 454445554


Q ss_pred             --ccCCCcEEEEEEEeecC
Q 037169           92 --GACGSPIVNGICIKNAT  108 (860)
Q Consensus        92 --~~~g~p~InaIEI~k~~  108 (860)
                        ...+.|-|.-|+|.+..
T Consensus       114 ~~~~~g~~niD~i~v~~~~  132 (139)
T 2w87_A          114 ATTAEGLPNIDSLSVVGGT  132 (139)
T ss_dssp             ESSTTCCCEEEEEEEESSS
T ss_pred             EcCCCCCEEEEEEEEecCC
Confidence              33467999999997643

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=90.06  E-value=5.2  Score=35.96  Aligned_cols=25  Identities=12%  Similarity=0.105  Sum_probs=9.0

Q ss_pred             HHHHHHHhcChHHHHHHHHHHHHHH
Q 037169          591 LEKTKQEVGSKDDVIQKLEENFQNL  615 (860)
Q Consensus       591 l~~~k~e~~~~~~~i~~le~~~~~l  615 (860)
                      +..++.+.....+....++..+...
T Consensus        11 m~~lk~e~e~a~d~ae~~e~~~k~~   35 (101)
T 3u59_A           11 MQMLKLDKENAIDRAEQAEADKKQA   35 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8

Probab=89.93  E-value=1.6  Score=48.15  Aligned_cols=80  Identities=15%  Similarity=0.233  Sum_probs=55.4

Q ss_pred             ceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECCEEEeeccchhhccCCCcceEEEEEEEeeCCCceEEEEEEc
Q 037169           13 FSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIRFDG   92 (860)
Q Consensus        13 ~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing~~vl~~fDI~~~~G~~~a~~~~~~~V~~~~~g~L~I~F~~   92 (860)
                      ++|.+ .+|+|+|.|++.|..-        . .=.|..++...+.     ...|. .....+.+++.   +|.++|.+..
T Consensus        78 ~~f~v-~~~~g~Y~v~v~~g~~--------~-~~~v~~e~~~~~~-----~~~g~-~~~~~~~v~~~---~g~~~l~~~~  138 (375)
T 2o14_A           78 NTFNV-DLPNGLYEVKVTLGNT--------A-RASVAAEGVFQVI-----NMTGD-GAEDTFQIPVT---DGQLNLLVTE  138 (375)
T ss_dssp             CCEEE-ECCSEEEEEEEEESSC--------S-EEEEEETTEEEEE-----EEEST-TCEEEEEEEEC---SSEEEEEEEE
T ss_pred             eEEEE-EcCCCceEEEEEecCC--------c-ceEEEEcceEEEE-----ecCCC-cEEEEEEEEee---CCeEEEeeee
Confidence            45777 7899999999999873        1 1346778875544     33343 23334667777   8999999873


Q ss_pred             c--CCCcEEEEEEEeecCCCC
Q 037169           93 A--CGSPIVNGICIKNATNVP  111 (860)
Q Consensus        93 ~--~g~p~InaIEI~k~~~~~  111 (860)
                      .  ...+.|++|+|.+.+..+
T Consensus       139 ~~~g~~~~l~~i~v~~~~~~~  159 (375)
T 2o14_A          139 GKAGTAFTLSALKIKKLSDQP  159 (375)
T ss_dssp             SSTTSCCEEEEEEEEEEESSC
T ss_pred             ccCCCCcccceEEEeccCCCC
Confidence            3  345899999999876543

>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}

Probab=89.43  E-value=2.6  Score=40.83  Aligned_cols=92  Identities=16%  Similarity=0.127  Sum_probs=55.6

Q ss_pred             ceEE-EeeCCCCcEEEEEEeeecccC-----CCCCcceEEEEEECCEEEeeccchhhccCCCcceEEEEEEEeeCCCceE
Q 037169           13 FSYR-IGNLSPGDYLVDLHFAEIVNA-----NGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVL   86 (860)
Q Consensus        13 ~sY~-f~~v~~G~Y~V~LhFaEi~~~-----~~~~g~RvFdV~ing~~vl~~fDI~~~~G~~~a~~~~~~~V~~~~~g~L   86 (860)
                      ..|. +.....|.|.|.++|+.-...     ....+.|.++|+|||.. ...+++....+.... ....+.|... .|.=
T Consensus        49 vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~-~~~v~fp~Tg~W~~~-~~~tv~V~L~-aG~N  125 (156)
T 2wz8_A           49 LQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGP-EKGHYFFNTRGWNTY-RTDIIDVYLN-AGNN  125 (156)
T ss_dssp             EEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCC-CEEEEECCCSSTTCC-EEEEEEEEEC-SEEE
T ss_pred             EEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCce-eeEEEeCCCCCCCcc-eEEEEEEEEC-CCce
Confidence            4577 744457999999999873211     00225899999999976 334444333333332 2233344322 6666


Q ss_pred             EEEEEcc--C-CCcEEEEEEEeec
Q 037169           87 LIRFDGA--C-GSPIVNGICIKNA  107 (860)
Q Consensus        87 ~I~F~~~--~-g~p~InaIEI~k~  107 (860)
                      +|+|...  . ..|-|-.|.|.+.
T Consensus       126 tI~~~~~~~~~~~pdiD~i~v~~~  149 (156)
T 2wz8_A          126 TIRFYNGTSGSYAPNIDKIAIAAL  149 (156)
T ss_dssp             EEEEECCSTTCBCCEEEEEEEEC-
T ss_pred             EEEEEecCCCCCCcEEEEEEEecc
Confidence            7888655  3 3489999998654

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=87.88  E-value=6.2  Score=44.97  Aligned_cols=12  Identities=42%  Similarity=0.274  Sum_probs=0.0

Q ss_pred             cCCCchHHHHHh
Q 037169          791 LKGTNSLRELRR  802 (860)
Q Consensus       791 ~~~~~~~~~~~~  802 (860)
                      -.|+.+..|--|
T Consensus       257 ~~g~gs~~~s~r  268 (562)
T 3ghg_A          257 SYGTGSETESPR  268 (562)
T ss_dssp             ------------
T ss_pred             CCCCCCCCCCCC
Confidence            334444444333

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.63  E-value=3.5  Score=46.57  Aligned_cols=43  Identities=30%  Similarity=0.546  Sum_probs=32.3

Q ss_pred             EEEEeeccCCCCcccccc--------------CC---CCCCCchhhHHHHHHHHHHHhcC
Q 037169          325 VCIFAYGQTGTGKTFTME--------------GT---QQNRGVNYRTLELLFKIAEERKE  367 (860)
Q Consensus       325 ~~IfaYGqTGSGKTyTM~--------------G~---~~~~GIipRal~~LF~~~~~~~~  367 (860)
                      -.|+-||++|+|||++..              |+   ....|-.++.++.+|........
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP  266 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAP  266 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCC
Confidence            358999999999997653              11   13457888999999998876543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=86.45  E-value=18  Score=32.49  Aligned_cols=13  Identities=23%  Similarity=0.355  Sum_probs=6.7

Q ss_pred             hhHHHHHHHHHHH
Q 037169          715 HSGMLQQKIAELE  727 (860)
Q Consensus       715 ~~~~lq~qi~eLe  727 (860)
                      ....|.++|.-|+
T Consensus        87 ev~~L~RriqllE   99 (101)
T 3u1c_A           87 EVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            3455555555554

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=81.52  E-value=0.52  Score=44.87  Aligned_cols=30  Identities=17%  Similarity=0.161  Sum_probs=23.2

Q ss_pred             chhhHHHhhCCccEEEEeeccCCCCccccc
Q 037169          312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTM  341 (860)
Q Consensus       312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM  341 (860)
                      +..++..+..+....|+-||++|+|||+.+
T Consensus        31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~   60 (195)
T 1jbk_A           31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV   60 (195)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence            445555555666677899999999999976

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=81.32  E-value=22  Score=40.62  Aligned_cols=14  Identities=21%  Similarity=0.368  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHH
Q 037169          602 DDVIQKLEENFQNL  615 (860)
Q Consensus       602 ~~~i~~le~~~~~l  615 (860)
                      ...|.+|..++.++
T Consensus        63 tkrINELKnqLEdl   76 (562)
T 3ghg_A           63 TNRINKLKNSLFEY   76 (562)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34455555555555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	860
d1bg2a_	323	c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId	1e-81
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	9e-69
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	2e-68
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	3e-68
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	9e-68
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	1e-67
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	2e-67
d1sdma_	364	c.37.1.9 (A:) Kinesin heavy chain-like protein {Po	5e-67
d1v8ka_	362	c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c	6e-60
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.001

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  263 bits (672), Expect = 1e-81
 Identities = 127/320 (39%), Positives = 181/320 (56%), Gaps = 19/320 (5%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELG-------------ILTVDVFAD-AS 313
           NI+V CR RPL++ E + G   +  F       +                   V+ D A 
Sbjct: 6   NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDCAK 65

Query: 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ---QNRGVNYRTLELLFKIAEERKETFT 370
            +V  VL+GYN  IFAYGQT +GKT TMEG     +  G+  R ++ +F       E   
Sbjct: 66  KIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLE 125

Query: 371 YSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHI 430
           + I VS  E+Y ++IRDLLD   +   L + +      +V G TE  + +  EV D +  
Sbjct: 126 FHIKVSYFEIYLDKIRDLLD--VSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDE 183

Query: 431 GSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQG 490
           G + R V   N+NEHSSRSH +  I+VK +N    +    KL+LVDLAGSE+++KT  +G
Sbjct: 184 GKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEG 243

Query: 491 ERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPS 550
             L EA+NIN+SLSALG+VIS+LA  S ++PYR+SK+T +LQDSLGG+ +T + +  SPS
Sbjct: 244 AVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPS 303

Query: 551 EQDLGETLSSLNFASRVRGV 570
             +  ET S+L F  R + +
Sbjct: 304 SYNESETKSTLLFGQRAKTI 323

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  230 bits (587), Expect = 9e-69
 Identities = 132/367 (35%), Positives = 187/367 (50%), Gaps = 32/367 (8%)

Query: 227 ELERKILIWKEEHSQLAREAHECASSVPQLNKMVSTIQVL-GNIRVFCRCRPLSKEEASA 285
           EL R       E      +  +      +L+   +T+  L GNIRVFCR RP  + E + 
Sbjct: 7   ELLRCNEQQAAELETCKEQLFQSNMERKELH---NTVMDLRGNIRVFCRIRPPLESEENR 63

Query: 286 GHAMVV------------DFSAAKDGELGILTVD-----------VFADASPLVTSVLDG 322
                             D  A       I + D           +F   SPL+ S LDG
Sbjct: 64  MCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDG 123

Query: 323 YNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVY 381
           YN+CIFAYGQTG+GKT+TM+G  ++ GV  RT++LLF          + Y I  + LE+Y
Sbjct: 124 YNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIY 183

Query: 382 NEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNN 441
           NE + DLL       ++ + + ++   +V  +TE  + +   +  ++H     RA  S  
Sbjct: 184 NEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTA 243

Query: 442 VNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINR 501
            NE SSRSH +  + +  ++    E +   + LVDLAGSE    +     R+ E +NINR
Sbjct: 244 GNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTS----TRMTETKNINR 299

Query: 502 SLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSL 561
           SLS L +VI +L  K  HIPYRNSKLTHLL  SLGG+SKTLMF+ +SP +    E++ SL
Sbjct: 300 SLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSL 359

Query: 562 NFASRVR 568
            FA+ V 
Sbjct: 360 RFAASVN 366

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score =  228 bits (582), Expect = 2e-68
 Identities = 130/354 (36%), Positives = 198/354 (55%), Gaps = 29/354 (8%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGIL-----------------TVDVFA 310
           +I+V  R RP ++ E  +G   +V F       +                      D+F 
Sbjct: 6   SIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFD 65

Query: 311 D-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTM----EGTQQNRGVNYRTLELLFKIAEER 365
               P V  +L+GYN  +FAYGQTG GK++TM          RGV  R +E +F      
Sbjct: 66  FSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSS 125

Query: 366 KETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVW 425
                Y++ VS +E+Y E+IRDLL   P +  L + +      +V GL E  + +++EV+
Sbjct: 126 AANIEYTVRVSYMEIYMERIRDLLA--PQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVY 183

Query: 426 DVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAK 485
           +V+  G NARAV + N+N+ SSRSH +  I++  KN+  G     +L+LVDLAGSE++ K
Sbjct: 184 EVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGK 243

Query: 486 TEVQGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
           T   G+ L+EA+ IN+SLSALG VI++L   KS H+PYR+SKLT +LQ+SLGG+S+T + 
Sbjct: 244 TGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLI 303

Query: 545 LQISPSEQDLGETLSSLNFASRVRGVELSPAR-KQIDISKLQKVKMMLEKTKQE 597
           +  SPS  +  ETLS+L F  R + ++       ++  ++L++   ML K K +
Sbjct: 304 INCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQ---MLAKAKTQ 354

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  227 bits (580), Expect = 3e-68
 Identities = 99/334 (29%), Positives = 151/334 (45%), Gaps = 40/334 (11%)

Query: 269 IRVFCRCRPLSKEEASAGHAMVVDFS---------------AAKDGELGILTVD-VFADA 312
           I+V  R RPLS+ E     + ++                    K  E     VD VF D 
Sbjct: 2   IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61

Query: 313 SP------------LVTSVLDGYNVCIFAYGQTGTGKTFTM-----EGTQQNRGVNYRTL 355
                         ++    +G     FAYGQTG+GKT+TM      G     G+     
Sbjct: 62  VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121

Query: 356 ELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTE 415
             +F       +  T  I +S  E+Y  ++ DLL            +  +    V  L  
Sbjct: 122 GDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVA---ALENGKKEVVVKDLKI 178

Query: 416 AKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLV 475
            ++   +E+   +  G   R +G N+ N+ SSRSH +L I +K    IN   +  K+  +
Sbjct: 179 LRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD---INKNTSLGKIAFI 235

Query: 476 DLAGSERLAKTEVQGE-RLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS 534
           DLAGSER A T  Q +    +  NINRSL AL + I ++ +   HIP+R+S+LT +L+D 
Sbjct: 236 DLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDI 295

Query: 535 LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
             G SK++M   ISP+     +TL++L ++SRV+
Sbjct: 296 FVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score =  227 bits (578), Expect = 9e-68
 Identities = 115/349 (32%), Positives = 175/349 (50%), Gaps = 49/349 (14%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSA---------AKDGELGILTVD----------- 307
           +++V  R RP +  E S     ++  S                   + D           
Sbjct: 2   SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPED 61

Query: 308 --------VFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQ--NRGVNYRTLE 356
                   V+ D    ++    +GYNVCIFAYGQTG GK++TM G Q+   +G+  +  E
Sbjct: 62  INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCE 121

Query: 357 LLFKIAEERK-ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTE 415
            LF    +   +  +YS+ VS +E+Y E++RDLL+         +R+      +V  L++
Sbjct: 122 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNL-RVREHPLLGPYVEDLSK 180

Query: 416 AKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTK----SK 471
             + +  ++ D++  G+  R V + N+NE SSRSH +  I    K             SK
Sbjct: 181 LAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSK 240

Query: 472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA------------TKSGH 519
           + LVDLAGSER   T  +G RLKE  NIN+SL+ LG VIS+LA             K+  
Sbjct: 241 ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDF 300

Query: 520 IPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
           IPYR+S LT LL+++LGG+S+T M   +SP++ +  ETLS+L +A R +
Sbjct: 301 IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 349

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score =  226 bits (576), Expect = 1e-67
 Identities = 119/345 (34%), Positives = 178/345 (51%), Gaps = 45/345 (13%)

Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV--------------------- 306
           NI+V  RCRP +  E  A    +V+    +  E+ + T                      
Sbjct: 1   NIQVVVRCRPFNLAERKASAHSIVECDPVR-KEVSVRTGGLADKSSRKTYTFDMVFGAST 59

Query: 307 ---DVFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQN-----------RGVN 351
              DV+     P++  V+ GYN  IFAYGQTGTGKTFTMEG +              G+ 
Sbjct: 60  KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 119

Query: 352 YRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKK---LEIRQASEGFH 408
            RTL  +F+  +       +S+ VS LE+YNE++ DLL+ S    +   +     ++   
Sbjct: 120 PRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 177

Query: 409 HVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL---ING 465
            + GL E  + N  EV+ +L  G+  R   +  +N +SSRSH +  +++  K        
Sbjct: 178 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 237

Query: 466 ECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
                KL LVDLAGSE + ++    +R +EA NIN+SL  LG VI++L  ++ H+PYR S
Sbjct: 238 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 297

Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV 570
           KLT +LQDSLGG ++T +   ISP+  +L ETLS+L +A R + +
Sbjct: 298 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 342

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score =  226 bits (575), Expect = 2e-67
 Identities = 133/343 (38%), Positives = 181/343 (52%), Gaps = 39/343 (11%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTV-------------------- 306
           GNIRV+CR RP  K   ++  +++       +  +  + V                    
Sbjct: 1   GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 60

Query: 307 -----DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKI 361
                DVF +   LV S LDGYNVCIFAYGQTG+GKTFTM       G+   T+  +F  
Sbjct: 61  QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 118

Query: 362 AEERK-ETFTYSISVSALEVYNEQIRDLLDTSPTSK--------KLEIRQASEGFHHVPG 412
             + K + + Y ++   +E+YNE I DLL +   +K                     +  
Sbjct: 119 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 178

Query: 413 LTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
           +T  K+E+ + V  +L   +  R+  S   NEHSS SH +  I +   N   G  +   L
Sbjct: 179 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTL 238

Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA---TKSGHIPYRNSKLTH 529
            LVDLAGSER+  ++V G+RL+E QNIN+SLS LGDVI +L    +   HIP+RNSKLT+
Sbjct: 239 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 298

Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
           LLQ SL GDSKTLMF+ ISPS   + ETL+SL FAS+V    L
Sbjct: 299 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 341

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  225 bits (574), Expect = 5e-67
 Identities = 144/363 (39%), Positives = 215/363 (59%), Gaps = 22/363 (6%)

Query: 269 IRVFCRCRPLSKEEASAGHAMVVDF-------SAAKDGELGILTVD-----------VFA 310
           IRV+CR RPL ++E  A     +            KD +      D           VF 
Sbjct: 2   IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE 61

Query: 311 DASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFT 370
           D   LV S +DGYNVCIFAYGQTG+GKTFT+ G   N G+  R +  LF+I ++    F+
Sbjct: 62  DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFS 121

Query: 371 YSISVSALEVYNEQIRDLLDTSPTS-KKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLH 429
           +S+    +E+Y + + DLL        KL+I++ S+G   V  +T   I   +E+  ++ 
Sbjct: 122 FSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQ 181

Query: 430 IGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQ 489
            GS  R      +NE SSRSH ++ + +++ NL      + KL  VDLAGSER+ K+   
Sbjct: 182 RGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSA 241

Query: 490 GERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISP 549
           G +LKEAQ+IN+SLSALGDVIS+L++ + HIPYRN KLT L+ DSLGG++KTLMF+ ISP
Sbjct: 242 GNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISP 301

Query: 550 SEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSK--DDVIQK 607
           +E +L ET +SL +ASRVR +   P  K +   ++ ++K ++   K++ G K  D+ +++
Sbjct: 302 AESNLDETHNSLTYASRVRSIVNDP-SKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEE 360

Query: 608 LEE 610
           +++
Sbjct: 361 IQD 363

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

 Score =  206 bits (524), Expect = 6e-60
 Identities = 102/340 (30%), Positives = 152/340 (44%), Gaps = 44/340 (12%)

Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDF---------------SAAKDGELGILTVD---- 307
             I V  R RPL+K+E +     V+                    K  E      D    
Sbjct: 30  HRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFD 89

Query: 308 -------VFAD-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTM------EGTQQNRGVNYR 353
                  V+   A PLV ++ +G     FAYGQTG+GKT TM      +    ++G+   
Sbjct: 90  ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAM 149

Query: 354 TLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPG 412
               +F    + R       + V+  E+YN ++ DLL+     + LE  +       V G
Sbjct: 150 ASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSR---QQVQVVG 206

Query: 413 LTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
           L E  +    +V  ++++GS  R  G    N +SSRSH    I ++ K  ++      K 
Sbjct: 207 LQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLH-----GKF 261

Query: 473 WLVDLAGSERLAKTEVQG-ERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLL 531
            LVDLAG+ER A T     +   E   IN+SL AL + I +L     H P+R SKLT +L
Sbjct: 262 SLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVL 321

Query: 532 QDS-LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV 570
           +DS +G +S+T M   ISP       TL++L +A RV+ +
Sbjct: 322 RDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 361

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 24/151 (15%), Positives = 60/151 (39%), Gaps = 4/151 (2%)

Query: 584 LQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESK 643
            +     L+  K++   +     + EE  Q      +          + + E E ++E +
Sbjct: 150 YRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVE 209

Query: 644 TQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELEN 703
                  +     + E  +  E++    +R  +E   +L E  +++ V  L  + R L  
Sbjct: 210 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 269

Query: 704 RLKAR----TQEFEVHSGMLQQKIAELEEKL 730
           +L+ +     + F+  S +++ +I +L+ K+
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	860
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	100.0
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	100.0
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	100.0
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	100.0
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	100.0
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	100.0
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	100.0
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	100.0
d2o14a1	146	Hypothetical protein YxiM {Bacillus subtilis [TaxI	98.38
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	87.15
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	83.78
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	83.51

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=8.1e-78  Score=668.85  Aligned_cols=328  Identities=42%  Similarity=0.666  Sum_probs=284.5

Q ss_pred             CeEEEEEeCCCCchhhhCCCceEEE------------------ecCCCCCccceeEEEEeccchhhHHHhhCCccEEEEe
Q 037169          268 NIRVFCRCRPLSKEEASAGHAMVVD------------------FSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFA  329 (860)
Q Consensus       268 nIrV~~RvRP~~~~E~~~~~~~~v~------------------~~~~~~~~~~~~~~dVf~~v~plV~~~l~G~N~~Ifa  329 (860)
                      .|||||||||+.+.|...+...++.                  |.++..++....+.+||..+.|+|+++++|||+||||
T Consensus         1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v~~lv~~~l~G~n~~i~a   80 (364)
T d1sdma_           1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFA   80 (364)
T ss_dssp             CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSSSSEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTCEEEEEE
T ss_pred             CeEEEEEcCCCChhhcccCCCCeEEeCCCCeEEecCCCCCceEEECCeecCCCCCHHHHHHHHHHHHHHHhcCCceeeec
Confidence            5899999999999887665443332                  2222222233344678888999999999999999999


Q ss_pred             eccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCC-CCceEEEecCCCce
Q 037169          330 YGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPT-SKKLEIRQASEGFH  408 (860)
Q Consensus       330 YGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~-~~~l~i~~~~~g~~  408 (860)
                      ||||||||||||+|+..++||+||++.+||..+......+.|.|++||+|||||.++|||.+... ...+.+++++.+++
T Consensus        81 YGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~~  160 (364)
T d1sdma_          81 YGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMV  160 (364)
T ss_dssp             ECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSCE
T ss_pred             cccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccceeecccCcc
Confidence            99999999999999999999999999999999999888899999999999999999999987543 35689999999999


Q ss_pred             EecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCccccccccc
Q 037169          409 HVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEV  488 (860)
Q Consensus       409 ~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~  488 (860)
                      +|.|++++.|.+++|++.++..|.++|.+++|.+|..|||||+||+|++...+..+.....|+|+|||||||||..++++
T Consensus       161 ~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~~kl~~vDLAGsEr~~~~~~  240 (364)
T d1sdma_         161 SVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGS  240 (364)
T ss_dssp             EEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCSCCCC---
T ss_pred             ccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccCcceeeeEEEEeechhhccccccccc
Confidence            99999999999999999999999999999999999999999999999999999888888999999999999999999999


Q ss_pred             chhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhh
Q 037169          489 QGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR  568 (860)
Q Consensus       489 ~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r  568 (860)
                      .|.+++|+.+||+||++|++||.+|+++..|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||++++
T Consensus       241 ~g~~~~E~~~iN~SL~~L~~vi~aL~~~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak  320 (364)
T d1sdma_         241 AGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVR  320 (364)
T ss_dssp             ------CCCTTCHHHHHHHHHHHHHHHTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHT
T ss_pred             cCceeeeccccccchhhHHHHHHHHHcCCCcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccChHHHHHHHHHHHHHHH
Q 037169          569 GVELSPARKQIDISKLQKVKMMLEKTKQ  596 (860)
Q Consensus       569 ~I~~~p~~~~~~~~~~~~lk~~l~~~k~  596 (860)
                      .|++.|..+... .++.+|+.++..++.
T Consensus       321 ~i~n~p~~n~~~-~~~~~l~~~i~~l~~  347 (364)
T d1sdma_         321 SIVNDPSKNVSS-KEVARLKKLVSYWKE  347 (364)
T ss_dssp             TCCCCCCCCEEC-HHHHHHHTTTTCC--
T ss_pred             hcccCCcccCCH-HHHHHHHHHHHHHHH
Confidence            999999977543 445555555444433

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2.9e-74  Score=641.05  Aligned_cols=310  Identities=41%  Similarity=0.600  Sum_probs=269.7

Q ss_pred             HHhhhhhccC-CCeEEEEEeCCCCchhhhCCCceEEE-----------------------ecCCCCCccceeEEEEeccc
Q 037169          257 NKMVSTIQVL-GNIRVFCRCRPLSKEEASAGHAMVVD-----------------------FSAAKDGELGILTVDVFADA  312 (860)
Q Consensus       257 ~~~~~~~~~~-gnIrV~~RvRP~~~~E~~~~~~~~v~-----------------------~~~~~~~~~~~~~~dVf~~v  312 (860)
                      ++|+|++.++ |||||||||||+++.|...+...++.                       |.++..+.....+.+||..+
T Consensus        34 ~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~v  113 (368)
T d2ncda_          34 KELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMV  113 (368)
T ss_dssp             HHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEECSCHHHHTTTCCCEEECSEEECTTCCHHHHHTTT
T ss_pred             HHHHhHHHHhcCCEEEEEEeCCCCchhcCCCCcEEEeCCCCeEEEccCCccccCCcCceeeECCeEECCCCCccchHHHH
Confidence            4566666554 99999999999999887655443332                       22222233333446788779


Q ss_pred             hhhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEeccccccccCC
Q 037169          313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRDLLDT  391 (860)
Q Consensus       313 ~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~DLL~~  391 (860)
                      .|+|+++++|||+||||||||||||||||+|++.++||+||++.+||+.+... ...+.|.|.+||+|||||.|+|||++
T Consensus       114 ~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~  193 (368)
T d2ncda_         114 SPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSN  193 (368)
T ss_dssp             HHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEESSSCEEETTCS
T ss_pred             HHHHHHHhcccceeEEeeccCCCccceEecccccccchhhHHHHHHhhhhhhhccccccceEEEEEEEEecceeeccccc
Confidence            99999999999999999999999999999999999999999999999988764 45678999999999999999999997


Q ss_pred             CCCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEee
Q 037169          392 SPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK  471 (860)
Q Consensus       392 ~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~sk  471 (860)
                      ........+++++.++++++|++++.|.+++++..++..|.++|.++.|.+|.+|||||+||+|++.......+....|+
T Consensus       194 ~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~~t~~n~~ssrSh~i~~i~v~~~~~~~~~~~~s~  273 (368)
T d2ncda_         194 EQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGS  273 (368)
T ss_dssp             SCCCCCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCCSSSCTTTTTTCEEEEEEEEEEECTTSCCEEEEE
T ss_pred             ccccccceeeccccccccccccceeccCCHHHHHHHHHHHHhhcccccccccccccccceEEEEEEEEEecCCCceEeee
Confidence            76666778889999999999999999999999999999999999999999999999999999999999888888889999


Q ss_pred             EEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCC
Q 037169          472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSE  551 (860)
Q Consensus       472 L~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~  551 (860)
                      |+||||||+|+...    +.+++|+.+||+||++|++||.+|++++.|||||+||||+||+|+|||||+|+||+||||+.
T Consensus       274 l~~VDLAGse~~~~----~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~iPyR~SkLT~lL~dsLggns~t~mI~~isp~~  349 (368)
T d2ncda_         274 INLVDLAGSESPKT----STRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQ  349 (368)
T ss_dssp             EEEEECCCCCCC--------------CTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGSSSSCEEEEEEEECCBG
T ss_pred             eeeeeeccccccch----hhhhcccccchhhHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHHhcCCCCeEEEEEEECCCh
Confidence            99999999998654    57899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHhHHHHHHHHHHhhcc
Q 037169          552 QDLGETLSSLNFASRVRGV  570 (860)
Q Consensus       552 ~~~~ETl~TL~fA~r~r~I  570 (860)
                      .+++||++||+||+||+++
T Consensus       350 ~~~~eTl~TL~fa~rak~~  368 (368)
T d2ncda_         350 DCFQESVKSLRFAASVNSC  368 (368)
T ss_dssp             GGHHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHHhcC
Confidence            9999999999999999864

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=100.00  E-value=3.1e-73  Score=629.72  Aligned_cols=312  Identities=40%  Similarity=0.648  Sum_probs=282.9

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEEecCC-----------------CCCccceeEEEEecc-chhhHHHhhCCccEEE
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVDFSAA-----------------KDGELGILTVDVFAD-ASPLVTSVLDGYNVCI  327 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~-----------------~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~I  327 (860)
                      ..||||||||||+.+.|...+...++.+...                 ..+.....+.+||.. +.|+|+++++|||+||
T Consensus         4 ~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti   83 (354)
T d1goja_           4 ANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTV   83 (354)
T ss_dssp             SCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEEEcCCCChHHHhcCCceEEEEECCCeEEEcCCCCcceEECCeEcCCCCCHHHHHHHHHHHHHHHhhccCceeE
Confidence            3689999999999999987766555544321                 111222223456665 7999999999999999


Q ss_pred             EeeccCCCCccccccCC----CCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEec
Q 037169          328 FAYGQTGTGKTFTMEGT----QQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQA  403 (860)
Q Consensus       328 faYGqTGSGKTyTM~G~----~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~  403 (860)
                      ||||||||||||||+|+    +..+|||||++++||..+........|.|+|||+|||||.++|||.+  ....+.++++
T Consensus        84 ~aYG~tgSGKT~Tm~G~~~~~~~~~Giipr~l~~l~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~--~~~~l~~~e~  161 (354)
T d1goja_          84 FAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAP--QNDNLPVHEE  161 (354)
T ss_dssp             EEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTST--TCCSCCEEEE
T ss_pred             EecccCCCCcceeeecccccCcccceecchhHHHHhhhhcccccCceEEEEeehhheecceEeecccc--cccceeeeee
Confidence            99999999999999995    35679999999999999988888889999999999999999999984  4557889999


Q ss_pred             CCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcccc
Q 037169          404 SEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERL  483 (860)
Q Consensus       404 ~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~  483 (860)
                      +.++++|.|++++.|.++++++.++..|..+|.+++|.+|..|||||+||+|+|.+.+...+....++|+|||||||||.
T Consensus       162 ~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~s~l~~vDLAGsE~~  241 (354)
T d1goja_         162 KNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKV  241 (354)
T ss_dssp             TTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCSCC
T ss_pred             cCCCEeecCceeecchhHHHHHHHHhhcccccccccccccccccccceEEEEEEEEeecCCCCeEEEEEEEeeccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999998888889999999999999999


Q ss_pred             cccccchhchHHHhHhhhhHHHHHHHHHHhccC-CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHH
Q 037169          484 AKTEVQGERLKEAQNINRSLSALGDVISSLATK-SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLN  562 (860)
Q Consensus       484 ~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~-~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~  562 (860)
                      .++++.|.+++|+..||+||++|++||.+|+++ ..|||||+||||+||+|+|||||+|+||+||||+..+++||++||+
T Consensus       242 ~~~~~~~~~~~e~~~IN~SL~~L~~vi~aL~~~~~~~iPyR~SkLT~lLkd~Lgg~s~t~~I~~isp~~~~~~eTl~TL~  321 (354)
T d1goja_         242 GKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLR  321 (354)
T ss_dssp             TTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHH
T ss_pred             cccCCccchhhhhhhhhHHHHHHHHHHHHHhcCCCCcCCcccCHHHHHHHHhcCCCCeEEEEEEECCCcccHHHHHHHHH
Confidence            999999999999999999999999999999975 5799999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccccccccc
Q 037169          563 FASRVRGVELSPARKQI  579 (860)
Q Consensus       563 fA~r~r~I~~~p~~~~~  579 (860)
                      ||++++.|++.|..+..
T Consensus       322 fa~~~~~i~~~~~~n~~  338 (354)
T d1goja_         322 FGMRAKSIKNKAKVNAE  338 (354)
T ss_dssp             HHHHHHTCBCCCCCCSS
T ss_pred             HHHHHhccCccceEcCC
Confidence            99999999999987654

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=100.00  E-value=6.2e-73  Score=628.97  Aligned_cols=297  Identities=34%  Similarity=0.476  Sum_probs=239.6

Q ss_pred             CCCeEEEEEeCCCCchhhhCCCceEEEecC--------------------------CCCCccceeEEEEecc-chhhHHH
Q 037169          266 LGNIRVFCRCRPLSKEEASAGHAMVVDFSA--------------------------AKDGELGILTVDVFAD-ASPLVTS  318 (860)
Q Consensus       266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~--------------------------~~~~~~~~~~~dVf~~-v~plV~~  318 (860)
                      -++|+|||||||+++.|...+...++.++.                          +..++....+.+||.+ +.|+|++
T Consensus        29 ~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~Q~~Vy~~~~~plv~~  108 (362)
T d1v8ka_          29 EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT  108 (362)
T ss_dssp             CCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred             CCCEEEEEEeCCCChHHhhCCCceEEEECCCcEEEEeCCccccccccCcCceeEeCCeecCCCCCHHHHHHHHHHHHHHH
Confidence            378999999999999998766554444322                          2222222233457765 7899999


Q ss_pred             hhCCccEEEEeeccCCCCccccccCCC------CCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEeccccccccCC
Q 037169          319 VLDGYNVCIFAYGQTGTGKTFTMEGTQ------QNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRDLLDT  391 (860)
Q Consensus       319 ~l~G~N~~IfaYGqTGSGKTyTM~G~~------~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~DLL~~  391 (860)
                      +++|||+||||||||||||||||+|+.      .++||+||++++||..+... ...+.|.|++||+|||||.++|||.+
T Consensus       109 ~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~  188 (362)
T d1v8ka_         109 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK  188 (362)
T ss_dssp             HHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTT
T ss_pred             HHhccCceEEeeccCCCCCceeeeecCCCCcccccCCeeeehhhhHHHHhhcccccccchhheeeeeeecCCeEEecccC
Confidence            999999999999999999999999975      36899999999999988643 33568999999999999999999974


Q ss_pred             CCCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEee
Q 037169          392 SPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK  471 (860)
Q Consensus       392 ~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~sk  471 (860)
                         ...+.+++++.+++++.|++++.|.|++|++.++..|..+|.+++|.+|..|||||+||+|.+...     ....++
T Consensus       189 ---~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~i~~i~i~~~-----~~~~~~  260 (362)
T d1v8ka_         189 ---KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK-----GRLHGK  260 (362)
T ss_dssp             ---TEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS-----SSEEEE
T ss_pred             ---CccccccccccCCcccCCCEEEEecCHHHHHHHHhccccccccccccCcccCcceeeEEEEEEEec-----ceeeee
Confidence               346788999999999999999999999999999999999999999999999999999999999753     245789


Q ss_pred             EEEeecCCccccccccc-chhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccc-cCCCcceeEEEecCC
Q 037169          472 LWLVDLAGSERLAKTEV-QGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS-LGGDSKTLMFLQISP  549 (860)
Q Consensus       472 L~lVDLAGSEr~~~t~~-~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqds-LgGnskT~mI~~VSP  549 (860)
                      |+|||||||||..+++. .+.+++|+.+||+||++||+||.+|+.++.|||||+||||+||+|+ |||||+|+||+||||
T Consensus       261 l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~~hiPyR~SkLT~lLkdsllGgns~t~~i~~vsp  340 (362)
T d1v8ka_         261 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISP  340 (362)
T ss_dssp             EEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEEECC
T ss_pred             EeeeecccccccccccccchhhhhhhhhhcccHHHHHHHHHHHhcCCCcCCCccCHHHHhhhhccCCCCccEEEEEEeCC
Confidence            99999999999988755 4578889999999999999999999999999999999999999999 799999999999999


Q ss_pred             CCCCHHhHHHHHHHHHHhhcc
Q 037169          550 SEQDLGETLSSLNFASRVRGV  570 (860)
Q Consensus       550 ~~~~~~ETl~TL~fA~r~r~I  570 (860)
                      +..+++||++||+||+|||+|
T Consensus       341 ~~~~~~eTl~TL~fa~rak~I  361 (362)
T d1v8ka_         341 GISSCEYTLNTLRYADRVKEL  361 (362)
T ss_dssp             BGGGHHHHHHHHHHHHHHHTT
T ss_pred             ChhhHHHHHHHHHHHHHHhcC
Confidence            999999999999999999987

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-73  Score=620.81  Aligned_cols=302  Identities=42%  Similarity=0.635  Sum_probs=276.8

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEe-------------cCCCCCccceeEEEEecc-chhhHHHhhCCccEEEEeecc
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDF-------------SAAKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFAYGQ  332 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~-------------~~~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~IfaYGq  332 (860)
                      -||||||||||+++.|...+...++.+             .++..+.....+.+||.. +.|+|+++++|||+|||||||
T Consensus         5 ~NI~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~~lv~~~l~G~n~~i~aYGq   84 (323)
T d1bg2a_           5 CNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQ   84 (323)
T ss_dssp             CEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECS
T ss_pred             CCEEEEEEeCCCChHHhccCCceEEEECCCCeEEECCceeECCEEECCCCCHHHHHHHHHHHHHHHHHcCCCcceeeecc
Confidence            589999999999998876655444433             233333333444667776 689999999999999999999


Q ss_pred             CCCCccccccCCCCC---CCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCCCceE
Q 037169          333 TGTGKTFTMEGTQQN---RGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHH  409 (860)
Q Consensus       333 TGSGKTyTM~G~~~~---~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~g~~~  409 (860)
                      |||||||||+|+..+   .||+||++.+||..+......+.|.|++||+|||||.++|||.+  ....+.+++++.++++
T Consensus        85 tgSGKTyT~~G~~~~~~~~gii~r~l~~l~~~~~~~~~~~~~~v~~S~~EIyne~i~DLL~~--~~~~~~~~~~~~~~~~  162 (323)
T d1bg2a_          85 TSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDV--SKTNLSVHEDKNRVPY  162 (323)
T ss_dssp             TTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCT--TCCSBCEEECTTSCEE
T ss_pred             cCCCCceeccCCcccccccchhhhHHHHHHhhhhccccccceEEEEEEEEEEcCcccccccc--cccceeEeecccccee
Confidence            999999999997655   49999999999999998888899999999999999999999985  3457889999999999


Q ss_pred             ecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcccccccccc
Q 037169          410 VPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQ  489 (860)
Q Consensus       410 v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~  489 (860)
                      +.|++++.|.++++++.++..|.++|++++|.+|..|||||+||+|++...+...+....|+|+|||||||||..+++..
T Consensus       163 v~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~ssRsh~i~~i~v~~~~~~~~~~~~s~l~~vDLAGse~~~~~~~~  242 (323)
T d1bg2a_         163 VKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAE  242 (323)
T ss_dssp             ETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCCCCCCSSS
T ss_pred             ecCCEEEEEeccHhHhHHhhhcccceeecccCCCCCCCccceEEEEEEEEEeCCCCcEEEEEEEEEecccccccccccch
Confidence            99999999999999999999999999999999999999999999999999998888889999999999999999999999


Q ss_pred             hhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhhc
Q 037169          490 GERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRG  569 (860)
Q Consensus       490 g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~  569 (860)
                      +.+++|+..||+||++|++||.+|+.++.|||||+||||+||+|+|||+++|+||+||||+..+++||++||+||+|+|+
T Consensus       243 ~~~~~e~~~iN~SL~~L~~vi~al~~~~~~iPyR~SkLT~lL~d~L~g~~~t~~I~~isp~~~~~~eTl~tL~fa~r~k~  322 (323)
T d1bg2a_         243 GAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKT  322 (323)
T ss_dssp             CTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCC
T ss_pred             hhhhhhhhcccccHHHHHHHHHHHhcCCCccCCccCHHHHHHHHhcCCCccEEEEEEECCcchhHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c
Q 037169          570 V  570 (860)
Q Consensus       570 I  570 (860)
                      |
T Consensus       323 I  323 (323)
T d1bg2a_         323 I  323 (323)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=100.00  E-value=6e-72  Score=616.61  Aligned_cols=303  Identities=46%  Similarity=0.675  Sum_probs=249.0

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEE--------------------------ecCCCCCccceeEEEEeccchhhHHHhh
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVD--------------------------FSAAKDGELGILTVDVFADASPLVTSVL  320 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~--------------------------~~~~~~~~~~~~~~dVf~~v~plV~~~l  320 (860)
                      |||||||||||+.+.+...+. .++.                          |.++..+.....+.|||..+.|+|++++
T Consensus         1 G~IrV~vRvRP~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v~~~v~~~l   79 (342)
T d1f9va_           1 GNIRVYCRIRPALKNLENSDT-SLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSL   79 (342)
T ss_dssp             CEEEEEEEECCCCTTTCCCTT-EEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHHHHHHGGGG
T ss_pred             CcEEEEEEeCcCCcccccCCC-ceEEeeccCCcceeeeccccccCCCCCceEeecCeEeCCCCCHHHHHHHhhhhhcchh
Confidence            899999999999876643322 2222                          2222222222333567777889999999


Q ss_pred             CCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEeccccccccCCCCCCC---
Q 037169          321 DGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRDLLDTSPTSK---  396 (860)
Q Consensus       321 ~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~---  396 (860)
                      +|||+||||||||||||||||+|+  ++||+||++++||..+... ..+..|.|+|||+|||||+|+|||++.+...   
T Consensus        80 ~G~n~~i~aYGqtgSGKT~T~~G~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~~~  157 (342)
T d1f9va_          80 DGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT  157 (342)
T ss_dssp             GTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC---------
T ss_pred             cccccceeeeeccCCccccccccC--cCchhHHHHHHHHhhhhhhhccccccceeeeeeeeccCeeEECCCCCCCccccc
Confidence            999999999999999999999996  5799999999999998764 4567999999999999999999998654321   


Q ss_pred             ----ceEEEe-cCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEee
Q 037169          397 ----KLEIRQ-ASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK  471 (860)
Q Consensus       397 ----~l~i~~-~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~sk  471 (860)
                          ++.++. ...++++|.|++++.|.+.+|++.++..|.++|.+++|.+|.+|||||+||+|++...+...+....|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~N~~ssrSh~i~~i~v~~~~~~~~~~~~s~  237 (342)
T d1f9va_         158 SIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGT  237 (342)
T ss_dssp             ----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEEE
T ss_pred             cccceeeeeecCCCCcEEEeeeEEEEecchHHHHHHHhhhhhccccccccccccCcccceeEEEEEEEecCCccceeeee
Confidence                244544 445789999999999999999999999999999999999999999999999999999888888888999


Q ss_pred             EEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccC---CCcccCCCCcchhhcccccCCCcceeEEEecC
Q 037169          472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATK---SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQIS  548 (860)
Q Consensus       472 L~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~---~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VS  548 (860)
                      |+|||||||||..+++..|.+++|+..||+||++|++||.+|+.+   ..|||||+||||+||+|+||||++|+||+|||
T Consensus       238 l~~vDLAGse~~~~~~~~~~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~~~~iPyR~SkLT~lL~d~lgg~s~t~~I~~vs  317 (342)
T d1f9va_         238 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNIS  317 (342)
T ss_dssp             EEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEEC
T ss_pred             eeeeeccCCcccccccchhhhhhhhhhccHHHHHHHHHHHHHhcccCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEEC
Confidence            999999999999999999999999999999999999999999963   46999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHHHHHhhcccc
Q 037169          549 PSEQDLGETLSSLNFASRVRGVEL  572 (860)
Q Consensus       549 P~~~~~~ETl~TL~fA~r~r~I~~  572 (860)
                      |+..+++||++||+||+|++.|++
T Consensus       318 p~~~~~~eTl~TL~fa~r~~~i~~  341 (342)
T d1f9va_         318 PSSSHINETLNSLRFASKVNSTRL  341 (342)
T ss_dssp             CSGGGHHHHHHHHHHHHHHCCTTT
T ss_pred             CchhhHHHHHHHHHHHHHhhccee
Confidence            999999999999999999999974

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=100.00  E-value=1.6e-72  Score=621.91  Aligned_cols=304  Identities=39%  Similarity=0.603  Sum_probs=250.8

Q ss_pred             CeEEEEEeCCCCchhhhCCCceEEEecCCC-----------------------CCccceeEEEEecc-chhhHHHhhCCc
Q 037169          268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAK-----------------------DGELGILTVDVFAD-ASPLVTSVLDGY  323 (860)
Q Consensus       268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~~~-----------------------~~~~~~~~~dVf~~-v~plV~~~l~G~  323 (860)
                      ||||||||||+.+.|...+...++.++...                       .+.....+.+||.+ +.|+|+++++||
T Consensus         1 NI~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~lv~~~l~G~   80 (345)
T d1x88a1           1 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGY   80 (345)
T ss_dssp             CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEEECCCChhhhccCCCeEEEEcCCCceEEEecCCCCCCCCcceEecCEEeCCCCCHHHHHHHHHHHhHHHHhccC
Confidence            899999999999998876665555443322                       11122223456665 689999999999


Q ss_pred             cEEEEeeccCCCCccccccCCCCC-----------CCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCC
Q 037169          324 NVCIFAYGQTGTGKTFTMEGTQQN-----------RGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTS  392 (860)
Q Consensus       324 N~~IfaYGqTGSGKTyTM~G~~~~-----------~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~  392 (860)
                      |+||||||||||||||||+|+..+           +||+||++++||..+..  .+..|.|+|||+|||||.|+|||++.
T Consensus        81 n~~i~aYGqtgSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~--~~~~~~v~vS~~EIy~e~v~DLL~~~  158 (345)
T d1x88a1          81 NCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLNPS  158 (345)
T ss_dssp             EEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEEEETTCTT
T ss_pred             CceEEeeeeccccceEEeeecCCcccccccccCccCCcHHHHHHHHHHhhhc--cCceEEEEEEEEEEECCeeEECCCCC
Confidence            999999999999999999998643           69999999999998764  45689999999999999999999864


Q ss_pred             CC-C--CceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCC---c
Q 037169          393 PT-S--KKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING---E  466 (860)
Q Consensus       393 ~~-~--~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~---~  466 (860)
                      .. .  ..+.++++..++++|+|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.......+   .
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SsRsH~i~~i~i~~~~~~~~~~~~  238 (345)
T d1x88a1         159 SDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL  238 (345)
T ss_dssp             SCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEE
T ss_pred             CcccccceeeecccCCCCEEEcCCEEEEeCCHHHHHHHHHhhhccccccccCccccccccceEEEEEEEEeeccCCCCCc
Confidence            32 2  2344556667789999999999999999999999999999999999999999999999999987654332   3


Q ss_pred             eeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEe
Q 037169          467 CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ  546 (860)
Q Consensus       467 ~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~  546 (860)
                      ...|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+.++.|||||+||||+||+|+|||+|+|+||+|
T Consensus       239 ~~~s~l~~vDLAGsEr~~~~~~~~~~~~e~~~in~Sl~~L~~vi~al~~~~~~iPyR~SkLT~lL~d~Lgg~s~t~~i~~  318 (345)
T d1x88a1         239 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIAT  318 (345)
T ss_dssp             EEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEEEEEEE
T ss_pred             eEeeeEEEEecCCccccccccchhhhhcccccccchHHHHHHHHHHHhcCCCcCCCccCHHHHHhHHhcCCCCcEEEEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHhHHHHHHHHHHhhccccc
Q 037169          547 ISPSEQDLGETLSSLNFASRVRGVELS  573 (860)
Q Consensus       547 VSP~~~~~~ETl~TL~fA~r~r~I~~~  573 (860)
                      |||+..+++||++||+||+|++.|+|.
T Consensus       319 vsp~~~~~~eTl~tL~fa~~~~~I~nk  345 (345)
T d1x88a1         319 ISPASLNLEETLSTLEYAHRAKNILNK  345 (345)
T ss_dssp             ECCCGGGHHHHHHHHHHHHHHTTCCCC
T ss_pred             eCCchhhHHHHHHHHHHHHHhhhccCC
Confidence            999999999999999999999999863

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.2e-71  Score=611.47  Aligned_cols=295  Identities=33%  Similarity=0.462  Sum_probs=253.3

Q ss_pred             eEEEEEeCCCCchhhhCCCceEEEecC--------------------------CCCCccceeEEEEecc-chhhHHHhh-
Q 037169          269 IRVFCRCRPLSKEEASAGHAMVVDFSA--------------------------AKDGELGILTVDVFAD-ASPLVTSVL-  320 (860)
Q Consensus       269 IrV~~RvRP~~~~E~~~~~~~~v~~~~--------------------------~~~~~~~~~~~dVf~~-v~plV~~~l-  320 (860)
                      |||||||||+.+.|...+...++....                          +..++....+.+||.. +.|+|.+++ 
T Consensus         2 IkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~fD~Vf~~~~~q~~vy~~~~~plv~~~~~   81 (330)
T d1ry6a_           2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYE   81 (330)
T ss_dssp             EEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHHH
T ss_pred             EEEEEEeCCCChHHHhcCCceEEEECCCcEEEEcCCccccccccCcCcceEeCCeecCCCCCHHHHHHHHHHHHHHHHHh
Confidence            899999999999887766554443221                          1112222223456655 789999988 


Q ss_pred             CCccEEEEeeccCCCCccccccCCC-----CCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCC
Q 037169          321 DGYNVCIFAYGQTGTGKTFTMEGTQ-----QNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTS  395 (860)
Q Consensus       321 ~G~N~~IfaYGqTGSGKTyTM~G~~-----~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~  395 (860)
                      +|||+||||||||||||||||+|++     +++||+||++++||+.+........|.|++||+|||||.++|||++.   
T Consensus        82 ~G~n~~i~aYGqTGSGKTyTm~G~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~v~~S~~EIyne~i~DLL~~~---  158 (330)
T d1ry6a_          82 NGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR---  158 (330)
T ss_dssp             HCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC----
T ss_pred             cCCCeEEEeeeccccccceeeecccccccccCCCchhHHHhhhhhhhhhhcccceEEEEEEEEeeeccccccccccc---
Confidence            5999999999999999999999975     56899999999999999888888899999999999999999999753   


Q ss_pred             CceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEe
Q 037169          396 KKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLV  475 (860)
Q Consensus       396 ~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lV  475 (860)
                      +.+.++++++++++++|++++.|.+++|++.++..|..+|.+++|.+|.+|||||+||+|++...+   .....|+|+||
T Consensus       159 ~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsh~i~~i~v~~~~---~~~~~s~l~~v  235 (330)
T d1ry6a_         159 KMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSLGKIAFI  235 (330)
T ss_dssp             ----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT---TTEEEEEEEEE
T ss_pred             ccceeeecCCCCccccCceEEEEeeccchhhhhhcccccccccccccccccCCcceEEEEEEEecc---cccccceeeee
Confidence            457788899999999999999999999999999999999999999999999999999999998653   34567999999


Q ss_pred             ecCCcccccccccchhch-HHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCH
Q 037169          476 DLAGSERLAKTEVQGERL-KEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDL  554 (860)
Q Consensus       476 DLAGSEr~~~t~~~g~rl-kE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~  554 (860)
                      |||||||..++++.|.+. .|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||+..++
T Consensus       236 DLAGsEr~~~~~~~~~~~~~e~~~IN~sL~~L~~vi~al~~~~~~iPyR~SkLT~lL~d~lggns~t~~I~~vsp~~~~~  315 (330)
T d1ry6a_         236 DLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCC  315 (330)
T ss_dssp             ECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGH
T ss_pred             cccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEECCchhhH
Confidence            999999999998888764 6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhc
Q 037169          555 GETLSSLNFASRVRG  569 (860)
Q Consensus       555 ~ETl~TL~fA~r~r~  569 (860)
                      +||++||+||+|||+
T Consensus       316 ~eTl~tL~fa~rak~  330 (330)
T d1ry6a_         316 EQTLNTLRYSSRVKN  330 (330)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999984

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=100.00  E-value=4.5e-71  Score=611.17  Aligned_cols=301  Identities=38%  Similarity=0.620  Sum_probs=254.8

Q ss_pred             CCeEEEEEeCCCCchhhhCCCceEEEecCCC--------C-Ccccee-------------------EEEEecc-chhhHH
Q 037169          267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK--------D-GELGIL-------------------TVDVFAD-ASPLVT  317 (860)
Q Consensus       267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~--------~-~~~~~~-------------------~~dVf~~-v~plV~  317 (860)
                      ..|||||||||+.+.|...+...++..+...        . .....+                   +.+||.+ +.|+|+
T Consensus         1 ~sIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~f~FD~vf~~~~~~~~~~~~sQ~~vy~~~~~plv~   80 (349)
T d2zfia1           1 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQ   80 (349)
T ss_dssp             CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHH
T ss_pred             CcEEEEEEeCCCChhHhcCCCcEEEEECCCcEEEECCCCCCcCCeeEEeceEeCCCCCccccccccHHHHHHHhhHHHHH
Confidence            3799999999999998776655544432211        0 001111                   2345555 689999


Q ss_pred             HhhCCccEEEEeeccCCCCccccccCCCC--CCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEeccccccccCCCCC
Q 037169          318 SVLDGYNVCIFAYGQTGTGKTFTMEGTQQ--NRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRDLLDTSPT  394 (860)
Q Consensus       318 ~~l~G~N~~IfaYGqTGSGKTyTM~G~~~--~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~DLL~~~~~  394 (860)
                      ++++|||+||||||||||||||||+|+++  ++|||||++++||+.++.. ...+.|.|.+||+|||||.|+|||.+.. 
T Consensus        81 ~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~Glipr~l~~lf~~~~~~~~~~~~~~v~~S~~Eiyne~i~DLL~~~~-  159 (349)
T d2zfia1          81 HAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN-  159 (349)
T ss_dssp             HHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT-
T ss_pred             HHHhccCceeeeeccCCCCCceeeccCccccccCchHHHHhhhhhhccccccCCcceEEEEEeeeeeCCEEEecccccc-
Confidence            99999999999999999999999999864  7999999999999999864 4467899999999999999999998543 


Q ss_pred             CCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCC----ceeEe
Q 037169          395 SKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING----ECTKS  470 (860)
Q Consensus       395 ~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~----~~~~s  470 (860)
                      ...+.+++++.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|.+........    ....|
T Consensus       160 ~~~~~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~s  239 (349)
T d2zfia1         160 KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS  239 (349)
T ss_dssp             CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEE
T ss_pred             cCCceEEecCCCCcEEEEeEEEeccCHHHHHHHHHhcccCeEeccCCCccccccccceEEEEEEEEecccCCCcccceee
Confidence            45788999999999999999999999999999999999999999999999999999999999987654322    23569


Q ss_pred             eEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc------------CCCcccCCCCcchhhcccccCCC
Q 037169          471 KLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT------------KSGHIPYRNSKLTHLLQDSLGGD  538 (860)
Q Consensus       471 kL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~------------~~~hVPYRdSKLT~LLqdsLgGn  538 (860)
                      +|+|||||||||.++++..|.+++|+.+||+||++|++||.+|+.            +..|||||+||||+||+|+|||+
T Consensus       240 ~l~~VDLAGsEr~~~~~~~g~~~~e~~~IN~SL~~L~~vi~aL~~~~~~~~~~~~~~~~~~IPyR~SkLT~lL~d~Lgg~  319 (349)
T d2zfia1         240 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGN  319 (349)
T ss_dssp             EEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTT
T ss_pred             EEEEeecccchhhhhcCCcccchhhccchhhHHHHHHHHHHHHHhhhcccccccccCCCCccCCcCCHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999974            33699999999999999999999


Q ss_pred             cceeEEEecCCCCCCHHhHHHHHHHHHHhh
Q 037169          539 SKTLMFLQISPSEQDLGETLSSLNFASRVR  568 (860)
Q Consensus       539 skT~mI~~VSP~~~~~~ETl~TL~fA~r~r  568 (860)
                      |+|+||+||||+..+++||++||+||+|||
T Consensus       320 s~t~~I~~vsp~~~~~~eTl~TL~fa~rak  349 (349)
T d2zfia1         320 SRTAMVAALSPADINYDETLSTLRYADRAK  349 (349)
T ss_dssp             CEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999986

>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: YxiM N-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=98.38  E-value=6.9e-07  Score=84.64  Aligned_cols=85  Identities=14%  Similarity=0.200  Sum_probs=63.5

Q ss_pred             cccccC-ceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECCEEEeeccchhhccCCCcceEE-EEEEEeeCCCc
Q 037169            7 SARFGN-FSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQV-VDVRVSVGMDE   84 (860)
Q Consensus         7 TaR~g~-~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing~~vl~~fDI~~~~G~~~a~~~-~~~~V~~~~~g   84 (860)
                      ..+++. +.|.+ +||+|.|.|+++|.+..         ..+|.++|..++.++.     |  .+... +.++|+   ||
T Consensus        58 ~~~~~~~~~f~v-~vPnG~Y~Vtv~~Gd~~---------~~~~~~eg~~~~~~~~-----g--~~~~~~~~V~Vt---DG  117 (146)
T d2o14a1          58 AYGTKSNNTFNV-DLPNGLYEVKVTLGNTA---------RASVAAEGVFQVINMT-----G--DGAEDTFQIPVT---DG  117 (146)
T ss_dssp             SCSTTCSCCEEE-ECCSEEEEEEEEESSCS---------EEEEEETTEEEEEEEE-----S--TTCEEEEEEEEC---SS
T ss_pred             ccccCCCceEEE-ECCCCeEEEEEEEecCC---------CccEEEeeEEeccccC-----C--ccEEEEEEEEEE---CC
Confidence            344443 57999 99999999999999822         3579999988877652     2  23344 677777   99


Q ss_pred             eEEEEEEccC--CCcEEEEEEEeecCCCC
Q 037169           85 VLLIRFDGAC--GSPIVNGICIKNATNVP  111 (860)
Q Consensus        85 ~L~I~F~~~~--g~p~InaIEI~k~~~~~  111 (860)
                      .|+|.|....  .+|.||+|+|.+.+..|
T Consensus       118 ~L~l~ft~~~~G~~~~in~l~I~~~~d~p  146 (146)
T d2o14a1         118 QLNLLVTEGKAGTAFTLSALKIKKLSDQP  146 (146)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEEEEEESSC
T ss_pred             eEEEEEecCCCCCccEEEEEEEEecccCC
Confidence            9999996443  46999999999876643

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=87.15  E-value=0.13  Score=54.89  Aligned_cols=30  Identities=23%  Similarity=0.296  Sum_probs=26.9

Q ss_pred             hhhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169          313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTME  342 (860)
Q Consensus       313 ~plV~~~l~G~N~~IfaYGqTGSGKTyTM~  342 (860)
                      ...+..++..-++.|+.-|+||||||.||.
T Consensus       147 ~~~l~~l~~~~~GliLvtGpTGSGKSTTl~  176 (401)
T d1p9ra_         147 HDNFRRLIKRPHGIILVTGPTGSGKSTTLY  176 (401)
T ss_dssp             HHHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred             HHHHHHHHhhhhceEEEEcCCCCCccHHHH
Confidence            346788899999999999999999999994

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=83.78  E-value=0.16  Score=49.59  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=19.0

Q ss_pred             HHhhCCccE-----EEEeeccCCCCccccc
Q 037169          317 TSVLDGYNV-----CIFAYGQTGTGKTFTM  341 (860)
Q Consensus       317 ~~~l~G~N~-----~IfaYGqTGSGKTyTM  341 (860)
                      ..+++|...     +++.||++|+|||+++
T Consensus        34 ~~~~~~~~~~~~~~~l~l~GppGtGKT~l~   63 (287)
T d1w5sa2          34 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA   63 (287)
T ss_dssp             HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred             HHHHcCCCCCCcceEEEeECCCCCCHHHHH
Confidence            456666533     5678999999999987

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.51  E-value=0.18  Score=49.22  Aligned_cols=29  Identities=24%  Similarity=0.373  Sum_probs=21.2

Q ss_pred             hhhHHHhhCCccE-----EEEeeccCCCCccccc
Q 037169          313 SPLVTSVLDGYNV-----CIFAYGQTGTGKTFTM  341 (860)
Q Consensus       313 ~plV~~~l~G~N~-----~IfaYGqTGSGKTyTM  341 (860)
                      ...+..++.|...     .|+-||++|||||++.
T Consensus        16 ~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la   49 (273)
T d1gvnb_          16 NDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR   49 (273)
T ss_dssp             HHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred             HHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHH
Confidence            3445556666554     4999999999999964