Citrus Sinensis ID: 037201

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCLLIRNQGRFYNNDKLVNHFRQIHEGEQKKRSNQIESARGKMEKYKMAVSAILTPKVGYGFADELKRAWFCVRNVRFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccHHHHHHHcEEEEEEEEEEEEEEEccccHHHHHHHHHHccccEEEEcccccHHHHHHHHccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHcccEEEEEEEEEEEEEEcccHHHHHHHHHHHccccEEEEcccccccHHcEEEEEEcHHHHHccc
Coil and Loop (DISEMBL)
PHFEASVELKKLISSFEVVKYMVANAnshafgyvpQVVREQRKKENCLLIrnqgrfynndklVNHFRQIHEGEQKKRSNQIESARGKMEKYKMAVSAIltpkvgygfADELKRAWFCVRNVRFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK
Flexible Loop (DISEMBL)
PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCLLIrnqgrfynndKLVNHFRqihegeqkkrsnqieSARGKMEKYKMAVSAILTPKVGYGFADELKRAWFCVRNVRFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAffswsdllmgk
Low Complexity Region (SEG)
PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCLLIRNQGRFYNNDKLVNHFRQIHEGEQKKRSNQIESARGKMEKYKMAVSAILTPKVGYGFADELKRAWFCVRNVRFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK
Disordered region (IsUnstruct)
*******ELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCLLIRNQGRFYNNDKLVNHFRQI*********************YKMAVSAILTPKVGYGFADELKRAWFCVRNVRFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLL***
Disordered Region (DISOPRED)
*HFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCLLIRNQGRFYNNDKLVNHFRQIHE***********************VSAILTPKVGYGFADELKRAWFCVRNVRFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMG*
Disordered Region (DISEMBL)
PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCLLIRNQGRFYNNDKLVNHFRQIHEGEQKKRSNQIESARGKMEKYKMAVSAILTPKVGYGFADELKRAWFCVRNVRFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK
Disordered Region (DISPRO)
PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCLLIRNQGRFYNNDKLVNHFRQIHEGEQKKRSNQIESARGKMEKYKMAVSAILTPKVGYGFADELKRAWFCVRNVRFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLM**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCLLIRNQGRFYNNDKLVNHFRQIHEGEQKKRSNQIESARGKMEKYKMAVSAILTPKVGYGFADELKRAWFCVRNVRFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
255537067	375	nucleic acid binding protein, putative [	1.0	0.472	0.528	3e-52
356538069	393	PREDICTED: uncharacterized protein LOC10	1.0	0.450	0.493	2e-49
449494370	368	PREDICTED: uncharacterized LOC101211196	1.0	0.480	0.480	2e-47
356569166	356	PREDICTED: uncharacterized protein LOC10	1.0	0.497	0.475	7e-47
357462889	411	hypothetical protein MTR_3g084750 [Medic	1.0	0.430	0.491	3e-46
224074705	300	predicted protein [Populus trichocarpa]	0.881	0.52	0.529	1e-45
449460491	367	PREDICTED: uncharacterized protein LOC10	0.994	0.479	0.475	2e-45
15234485	364	C2H2 type zinc finger protein [Arabidops	1.0	0.486	0.436	1e-41
297809527	365	zinc finger family protein [Arabidopsis	1.0	0.484	0.436	3e-41
255537065	294	nucleic acid binding protein, putative [	0.694	0.418	0.554	6e-38

>gi|255537067|ref|XP_002509600.1| nucleic acid binding protein, putative [Ricinus communis] gi|223549499|gb|EEF50987.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/227 (52%), Positives = 142/227 (62%), Gaps = 50/227 (22%)

Query: 1   PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCL------------ 48
           P +EA+ +LKK  SSF  VKYMVA AN HAF YVP VV+EQRK+   L            
Sbjct: 65  PPYEAAFKLKKAASSFGFVKYMVAYANRHAFSYVPHVVKEQRKERKLLNHLEKKGVIKPV 124

Query: 49  ---LIRNQGR-FYNNDKLVNHFRQIHEGEQKKRSNQIESARGK------------MEKYK 92
              L R  GR FYNN+KL+NHF+QIHE EQ+KR NQIESARGK            M+KYK
Sbjct: 125 EPYLCRVCGRRFYNNEKLINHFKQIHEREQQKRLNQIESARGKRRVNLVAKYAMKMQKYK 184

Query: 93  MAVSAILTPKVGYGFADELKRAWFCVRNV----------------------RFGCLMVVS 130
            A   +LTPKVGYG ADELKRA F V  V                      R  CL++VS
Sbjct: 185 NAARDVLTPKVGYGLADELKRAGFWVTTVSDKPQAADVALREHIVDMMDKRRAECLVLVS 244

Query: 131 DDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK 177
           DDS+FV V +EA LRC+K VVVGD++DGALKR+A+A FSW ++LMGK
Sbjct: 245 DDSDFVGVLKEAKLRCVKTVVVGDINDGALKRVADAEFSWQEILMGK 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538069|ref|XP_003537527.1| PREDICTED: uncharacterized protein LOC100785257 [Glycine max]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/227 (49%), Positives = 137/227 (60%), Gaps = 50/227 (22%)

Query: 1   PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCLL-IRNQG----- 54
           P +E + +L+   SSF VV+YMVA ANSH F +VPQ VRE RK++  L  + N+G     
Sbjct: 75  PPYEVANKLRIAASSFGVVRYMVAYANSHTFSHVPQGVRESRKEKELLYRLENKGVIKPN 134

Query: 55  ----------RFYNNDKLVNHFRQIHEGEQKKRSNQIESARG------------KMEKYK 92
                     +FY NDKLVNHF+Q+HE E  KR NQIESARG            KMEKYK
Sbjct: 135 QPYRCKVCGRKFYTNDKLVNHFKQLHESEHTKRMNQIESARGSRRVKLVAKYSMKMEKYK 194

Query: 93  MAVSAILTPKVGYGFADELKRAWFCVRNV----------------------RFGCLMVVS 130
            A S ILTPKVGYG ADELKRA F VR V                      R  C+++VS
Sbjct: 195 KAASDILTPKVGYGLADELKRAGFWVRTVSDKPQAADQALQSHIVDIMDHRRVECVVLVS 254

Query: 131 DDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK 177
           DDS+FV+V  EA +RCLK VV+GD+ +G LKR A+  FSW ++LMGK
Sbjct: 255 DDSDFVDVINEAKMRCLKTVVIGDIDEGFLKRTADTAFSWEEILMGK 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494370|ref|XP_004159528.1| PREDICTED: uncharacterized LOC101211196 [Cucumis sativus]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/227 (48%), Positives = 139/227 (61%), Gaps = 50/227 (22%)

Query: 1   PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCL------------ 48
           P ++A+V+L+   +SF  V+YMVA AN HAF YVPQVVRE++++   L            
Sbjct: 57  PPYQAAVKLRTAAASFGAVRYMVAYANRHAFSYVPQVVRERKRERKMLNQLERKGVIKSI 116

Query: 49  ---LIRNQGR-FYNNDKLVNHFRQIHEGEQKKRSNQIESARG------------KMEKYK 92
              L R  GR FY N+KLVNHF+QIHE E KKR NQIESA+G            K++KYK
Sbjct: 117 EPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLVAKYSMKIQKYK 176

Query: 93  MAVSAILTPKVGYGFADELKRAWFCVRNV----------------------RFGCLMVVS 130
            A   +LTP+VGYG ADELKRA F V+ V                      +  CL++VS
Sbjct: 177 NAARDVLTPEVGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEIMDRRKAECLVLVS 236

Query: 131 DDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK 177
           DDS+FV V +EA LRCL+ VVVGD++DG LKR A+  FSW ++LMGK
Sbjct: 237 DDSDFVNVLKEAKLRCLRTVVVGDLNDGPLKRNADTGFSWQEILMGK 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569166|ref|XP_003552776.1| PREDICTED: uncharacterized protein LOC100789840 [Glycine max]

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/227 (47%), Positives = 136/227 (59%), Gaps = 50/227 (22%)

Query: 1   PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCLL-IRNQG----- 54
           P +E + +L+   SSF VV+YM A ANSH F +VPQ VRE RK++  L  + N+G     
Sbjct: 80  PPYEVANKLRIAASSFGVVRYMAAYANSHTFSHVPQGVREIRKEKELLYRLENKGVIKPN 139

Query: 55  ----------RFYNNDKLVNHFRQIHEGEQKKRSNQIESARG------------KMEKYK 92
                     +F+ NDKLVNHF+Q+HE E  KR NQIES+RG            KMEKYK
Sbjct: 140 QPYRCKVCGRKFHTNDKLVNHFKQLHEREHAKRMNQIESSRGSRRVKLVAKYSMKMEKYK 199

Query: 93  MAVSAILTPKVGYGFADELKRAWFCVRNV----------------------RFGCLMVVS 130
            A S ILTPKVGYG ADEL+RA F V+ V                      R  C+++VS
Sbjct: 200 KAASDILTPKVGYGLADELRRAGFWVQTVSDKPQAADQALQSHIVDIMDHRRVECVVLVS 259

Query: 131 DDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK 177
           DDS+FV+V  EA +RCLK VV+GD+ DG LKR A+  FSW ++LMGK
Sbjct: 260 DDSDFVDVINEAKMRCLKTVVIGDIDDGFLKRTADTAFSWEEILMGK 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462889|ref|XP_003601726.1| hypothetical protein MTR_3g084750 [Medicago truncatula] gi|355490774|gb|AES71977.1| hypothetical protein MTR_3g084750 [Medicago truncatula]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/228 (49%), Positives = 139/228 (60%), Gaps = 51/228 (22%)

Query: 1   PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCL--------LIRN 52
           P +E + +L+   +SF VV++MVA ANSH F  VP +VRE+RK+   L        + RN
Sbjct: 111 PPYEVANKLRIAAASFGVVRHMVAYANSHTFSNVPHIVRERRKERELLYRLEDKGVIKRN 170

Query: 53  Q-------GR-FYNNDKLVNHFRQIHEGEQKKRSNQIESARG------------KMEKYK 92
           +       GR FY N+KLVNHF+Q+HE E  KR N+IESARG            KMEKYK
Sbjct: 171 EPHVCRVCGRKFYTNEKLVNHFKQLHEREHAKRLNRIESARGSRKVKLVGQYAMKMEKYK 230

Query: 93  MAVSAILTPKVGYGFADELKRAWFCVRNV----------------------RFGCLMVVS 130
            A SA+LTPKVGYG ADELKRA F V+ V                      R  CL++VS
Sbjct: 231 KAASAVLTPKVGYGLADELKRAGFWVQTVLDRPQAADIALQKHMVDMMDHRRVECLVLVS 290

Query: 131 DDSNFVEVFQEATLRCLKMVVVGDM-SDGALKRIANAFFSWSDLLMGK 177
           DDS+FV+V +EA LRCLK VV+GD  SDG LKR A+  FSW ++LMGK
Sbjct: 291 DDSDFVDVIKEAKLRCLKTVVIGDFSSDGVLKRTADTAFSWEEILMGK 338

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074705|ref|XP_002304433.1| predicted protein [Populus trichocarpa] gi|222841865|gb|EEE79412.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 126/206 (61%), Gaps = 50/206 (24%)

Query: 22  MVANANSHAFGYVPQVVREQRKKENCL---------------LIRNQGR-FYNNDKLVNH 65
           MVA AN HAF YVPQVVRE+RK+   L               L R  GR FYNN+K +NH
Sbjct: 1   MVAYANRHAFSYVPQVVREERKQRKSLNQLENKGVIKPVESYLCRVCGRNFYNNEKFINH 60

Query: 66  FRQIHEGEQKKRSNQIESARGK------------MEKYKMAVSAILTPKVGYGFADELKR 113
           F+QIHE EQ+KR NQIESARGK            M+KYK A   ILTPKVGYG ADELKR
Sbjct: 61  FKQIHEREQQKRLNQIESARGKRRVMLVGKYAMKMQKYKNAARDILTPKVGYGLADELKR 120

Query: 114 AWFCVRNV----------------------RFGCLMVVSDDSNFVEVFQEATLRCLKMVV 151
           A F VR V                      R  C ++VSDDS+FV V +EA  RCLK VV
Sbjct: 121 AGFWVRTVLDKPQAADVALKDHMVDMMDKRRAECFVLVSDDSDFVHVLKEAKSRCLKTVV 180

Query: 152 VGDMSDGALKRIANAFFSWSDLLMGK 177
           VGD++DGALKR+A+A FSW ++LMGK
Sbjct: 181 VGDVNDGALKRVADAGFSWQEILMGK 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460491|ref|XP_004147979.1| PREDICTED: uncharacterized protein LOC101211196 [Cucumis sativus]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/227 (47%), Positives = 138/227 (60%), Gaps = 51/227 (22%)

Query: 1   PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCL------------ 48
           P ++A+V+L+   +SF  V+YMVA AN HAF YVPQVVRE++++   L            
Sbjct: 57  PPYQAAVKLRTAAASFGAVRYMVAYANRHAFSYVPQVVRERKRERKMLNQLERKGVIKSI 116

Query: 49  ---LIRNQGR-FYNNDKLVNHFRQIHEGEQKKRSNQIESARG------------KMEKYK 92
              L R  GR FY N+KLVNHF+QIHE E KKR NQIESA+G            K++KYK
Sbjct: 117 EPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLVAKYSMKIQKYK 176

Query: 93  MAVSAILTPKVGYGFADELKRAWFCVRNV----------------------RFGCLMVVS 130
            A   +L P+VGYG ADELKRA F V+ V                      +  CL++VS
Sbjct: 177 NAARDVL-PEVGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEIMDRRKAECLVLVS 235

Query: 131 DDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK 177
           DDS+FV V +EA LRCL+ VVVGD++DG LKR A+  FSW ++LMGK
Sbjct: 236 DDSDFVNVLKEAKLRCLRTVVVGDLNDGPLKRNADTGFSWQEILMGK 282

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234485|ref|NP_192961.1| C2H2 type zinc finger protein [Arabidopsis thaliana] gi|5281035|emb|CAB45971.1| hypothetical proteins [Arabidopsis thaliana] gi|7267925|emb|CAB78267.1| hypothetical proteins [Arabidopsis thaliana] gi|26452877|dbj|BAC43517.1| unknown protein [Arabidopsis thaliana] gi|28973009|gb|AAO63829.1| unknown protein [Arabidopsis thaliana] gi|332657707|gb|AEE83107.1| C2H2 type zinc finger protein [Arabidopsis thaliana]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/227 (43%), Positives = 130/227 (57%), Gaps = 50/227 (22%)

Query: 1   PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCL-LIRNQG----- 54
           P ++A+V+L+   SSF  VK M+A AN HAF YVP  VREQRK    L  + N+G     
Sbjct: 55  PPYDAAVKLRTAASSFGTVKLMMAYANRHAFSYVPLEVREQRKDRKLLNKLENKGLVKPP 114

Query: 55  ----------RFYNNDKLVNHFRQIHEGEQKKRSNQIESARG------------KMEKYK 92
                     RFY N+KL+NHF+QIHE E +KR  QIES++G            K+EKYK
Sbjct: 115 EPYFCGVCDRRFYTNEKLINHFKQIHETENQKRMRQIESSKGHRRVRLVAKYSMKIEKYK 174

Query: 93  MAVSAILTPKVGYGFADELKRAWFCVRNV----------------------RFGCLMVVS 130
            A   +LTPK GYG ADELKRA F V+ V                         C+++VS
Sbjct: 175 RAARNVLTPKEGYGLADELKRAGFWVKMVSDKPDAADKALKEHLVEVMDKREVECVVLVS 234

Query: 131 DDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK 177
           DDS+F  +  EA  RCL+ VV+GD ++GALKR+A+  +SW ++ MGK
Sbjct: 235 DDSDFAGILWEAKERCLRTVVIGDSNEGALKRVADVAYSWKEVTMGK 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809527|ref|XP_002872647.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297318484|gb|EFH48906.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/227 (43%), Positives = 131/227 (57%), Gaps = 50/227 (22%)

Query: 1   PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCL-LIRNQG----- 54
           P ++A+V+L+   SSF  VK M+A AN HAF YVP  VREQRK    L  + N+G     
Sbjct: 53  PPYDAAVKLRTAASSFGSVKLMMAYANRHAFSYVPLEVREQRKDRKLLNQLENKGLVKPP 112

Query: 55  ----------RFYNNDKLVNHFRQIHEGEQKKRSNQIESARG------------KMEKYK 92
                     RFY N+KL+NHF+QIHE E +KR  QIES++G            K+EKYK
Sbjct: 113 EPYFCGVCDRRFYTNEKLINHFKQIHETENQKRMRQIESSKGHQRVRLVAKYSMKIEKYK 172

Query: 93  MAVSAILTPKVGYGFADELKRAWFCVRNV----------------------RFGCLMVVS 130
            A   ILTPK GYG ADELKRA F V+ V                         C+++VS
Sbjct: 173 RAARNILTPKEGYGLADELKRAGFWVKMVSDKPEAADKALKEHLVDMMDKREVECVVLVS 232

Query: 131 DDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK 177
           DDS++  +  EA  RCL+ VV+GD ++GALKR+A+  +SW +++MGK
Sbjct: 233 DDSDYAGILWEAKERCLRTVVIGDSNEGALKRVADVAYSWKEVVMGK 279

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537065|ref|XP_002509599.1| nucleic acid binding protein, putative [Ricinus communis] gi|223549498|gb|EEF50986.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/157 (55%), Positives = 104/157 (66%), Gaps = 34/157 (21%)

Query: 55  RFYNNDKLVNHFRQIHEGEQKKRSNQIESARGK------------MEKYKMAVSAILTPK 102
           RFYNN+KL+NHF+QIHE EQ+KR NQIESARGK            M+KYK A   +LTPK
Sbjct: 54  RFYNNEKLINHFKQIHEREQQKRLNQIESARGKRRVNLVAKYAMKMQKYKNAARDVLTPK 113

Query: 103 VGYGFADELKRAWFCVRNV----------------------RFGCLMVVSDDSNFVEVFQ 140
           VGYG ADELKRA F V  V                      R  CL++VSDDS+FV V +
Sbjct: 114 VGYGLADELKRAGFWVTTVSDKPQAADVALREHIVDMMDKRRAECLVLVSDDSDFVGVLK 173

Query: 141 EATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK 177
           EA LRC+K VVVGD++DGALKR+A+A FSW ++LMGK
Sbjct: 174 EAKLRCVKTVVVGDINDGALKRVADAEFSWQEILMGK 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2139119	364	AT4G12240 "AT4G12240" [Arabido	0.485	0.236	0.480	1.3e-31
TAIR|locus:2173038	396	AT5G52010 "AT5G52010" [Arabido	0.355	0.159	0.413	1.2e-12

TAIR|locus:2139119 AT4G12240 "AT4G12240" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
 Identities = 49/102 (48%), Positives = 63/102 (61%)

Query:     1 PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCL-LIRNQG----- 54
             P ++A+V+L+   SSF  VK M+A AN HAF YVP  VREQRK    L  + N+G     
Sbjct:    55 PPYDAAVKLRTAASSFGTVKLMMAYANRHAFSYVPLEVREQRKDRKLLNKLENKGLVKPP 114

Query:    55 ----------RFYNNDKLVNHFRQIHEGEQKKRSNQIESARG 86
                       RFY N+KL+NHF+QIHE E +KR  QIES++G
Sbjct:   115 EPYFCGVCDRRFYTNEKLINHFKQIHETENQKRMRQIESSKG 156

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2173038 AT5G52010 "AT5G52010" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 31/75 (41%), Positives = 43/75 (57%)

Query:    59 NDKLVNHFRQIHEGEQKKRSNQIESARGKM------------EKYKMAVSAILTPKVGYG 106
             N  L  HF+Q+HE E++K+ N++ S +GK             EKY  A  ++LTPKVGYG
Sbjct:   164 NLDLKKHFKQLHERERQKKVNRMRSLKGKKRQKFKERYVSGNEKYNEAARSLLTPKVGYG 223

Query:   107 FADELKRAWFCVRNV 121
                EL+RA   V+ V
Sbjct:   224 LEAELRRAGVYVKTV 238

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
cd06167	149	LabA_like LabA_like proteins. A well conserved gro	98.21
PF01936	146	NYN: NYN domain; InterPro: IPR021139 This highly c	98.17
TIGR00288	160	conserved hypothetical protein TIGR00288. This fam	97.75
COG1432	181	Uncharacterized conserved protein [Function unknow	97.34
cd05013	139	SIS_RpiR RpiR-like protein. RpiR contains a SIS (S	96.4
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.26
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.23
cd05014	128	SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5	96.18
cd05005	179	SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI	95.33
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.79
PF01380	131	SIS: SIS domain SIS domain web page.; InterPro: IP	94.69
cd05008	126	SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repea	94.5
smart00355	26	ZnF_C2H2 zinc finger.	93.93
PRK11557	278	putative DNA-binding transcriptional regulator; Pr	93.71
TIGR03127	179	RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of	93.69
cd05710	120	SIS_1 A subgroup of the SIS domain. SIS (Sugar ISo	93.38
PRK15482	285	transcriptional regulator MurR; Provisional	93.28
TIGR00441	154	gmhA phosphoheptose isomerase. Involved in lipopol	93.24
PRK11337	292	DNA-binding transcriptional repressor RpiR; Provis	93.22
cd05006	177	SIS_GmhA Phosphoheptose isomerase is a member of t	91.96
PRK13937	188	phosphoheptose isomerase; Provisional	91.72
PRK13936	197	phosphoheptose isomerase; Provisional	90.49
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	90.34
PRK00414	192	gmhA phosphoheptose isomerase; Reviewed	89.67
PHA00616	44	hypothetical protein	89.57
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	89.08
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	88.86
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	88.2
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	87.45
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	87.4
PHA02768	55	hypothetical protein; Provisional	87.08
PRK13938	196	phosphoheptose isomerase; Provisional	87.03
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	86.96
PRK14101	638	bifunctional glucokinase/RpiR family transcription	86.17
PRK11302	284	DNA-binding transcriptional regulator HexR; Provis	86.13
PRK02947	246	hypothetical protein; Provisional	86.01
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	85.91
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	85.76
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	85.25
cd01545	270	PBP1_SalR Ligand-binding domain of DNA transcripti	85.06
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	84.53
cd06282	266	PBP1_GntR_like_2 Ligand-binding domain of putative	83.44
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	83.35
cd01542	259	PBP1_TreR_like Ligand-binding domain of DNA transc	82.07
COG1737	281	RpiR Transcriptional regulators [Transcription]	81.87
PRK05441	299	murQ N-acetylmuramic acid-6-phosphate etherase; Re	81.72
cd06295	275	PBP1_CelR Ligand binding domain of a transcription	81.18
cd05007	257	SIS_Etherase N-acetylmuramic acid 6-phosphate ethe	80.9
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	80.76
cd06281	269	PBP1_LacI_like_5 Ligand-binding domain of uncharac	80.71
TIGR00274	291	N-acetylmuramic acid 6-phosphate etherase. This pr	80.61
cd01540	289	PBP1_arabinose_binding Periplasmic L-arabinose-bin	80.07
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	80.07

>cd06167 LabA_like LabA_like proteins

Probab=98.21  E-value=4.1e-06  Score=63.39  Aligned_cols=46  Identities=28%  Similarity=0.469  Sum_probs=41.1

Q ss_pred             ecceEEEEeCCCchHHHHHHHHHcCccEEEEecC--Cchhhhhhhccc
Q 037201          122 RFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDM--SDGALKRIANAF  167 (177)
Q Consensus       122 ~v~clvLVSDdsdf~~~lr~Ar~r~l~TVVVGd~--~~~~L~r~Ad~~  167 (177)
                      ++|++||||-|+||+++++.+++.|.+.+|+|-.  ....|...||-.
T Consensus        99 ~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d~f  146 (149)
T cd06167          99 RIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFEAKTSRELRKAADRF  146 (149)
T ss_pred             CCCEEEEEECCccHHHHHHHHHHcCCEEEEEccCccChHHHHHhCCcc
Confidence            5899999999999999999999999999999984  346899999843

A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.

>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function

Probab=98.17  E-value=4.7e-06  Score=61.83  Aligned_cols=48  Identities=31%  Similarity=0.496  Sum_probs=36.3

Q ss_pred             ecceEEEEeCCCchHHHHHHHHHcCccEEEEe--cCCchhhhhhhccccc
Q 037201          122 RFGCLMVVSDDSNFVEVFQEATLRCLKMVVVG--DMSDGALKRIANAFFS  169 (177)
Q Consensus       122 ~v~clvLVSDdsdf~~~lr~Ar~r~l~TVVVG--d~~~~~L~r~Ad~~~s  169 (177)
                      ..|.+||||-|+||.++++.++++|.+++|+|  +.....|.+.||-+++
T Consensus        95 ~~d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~  144 (146)
T PF01936_consen   95 PPDTIVLVSGDSDFAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFIS  144 (146)
T ss_dssp             G-SEEEEE---GGGHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEEE
T ss_pred             CCCEEEEEECcHHHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEEe
Confidence            45999999999999999999999999999999  3555799999997654

However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.

>TIGR00288 conserved hypothetical protein TIGR00288

Probab=97.75  E-value=6.9e-05  Score=61.53  Aligned_cols=64  Identities=19%  Similarity=0.239  Sum_probs=53.1

Q ss_pred             CchHHhhhhcEEEEEe-------------------ecceEEEEeCCCchHHHHHHHHHcCccEEEEecC--Cchhhhhhh
Q 037201          106 GFADELKRAWFCVRNV-------------------RFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDM--SDGALKRIA  164 (177)
Q Consensus       106 gLa~eLrRAGv~Vr~V-------------------~v~clvLVSDdsdf~~~lr~Ar~r~l~TVVVGd~--~~~~L~r~A  164 (177)
                      +|...|++.||.+..+                   .+|++||||-|+||+.+++.+|++|.+.+|||-.  ...+|.+.|
T Consensus        70 ~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~ac  149 (160)
T TIGR00288        70 KLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGAEPGFSTALQNSA  149 (160)
T ss_pred             HHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhc
Confidence            3566777888876654                   8899999999999999999999999999999943  335899999


Q ss_pred             ccccc
Q 037201          165 NAFFS  169 (177)
Q Consensus       165 d~~~s  169 (177)
                      |-++.
T Consensus       150 d~FI~  154 (160)
T TIGR00288       150 DIAII  154 (160)
T ss_pred             CeEEe
Confidence            87664

This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.

>COG1432 Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=0.00022  Score=58.15  Aligned_cols=64  Identities=19%  Similarity=0.349  Sum_probs=54.0

Q ss_pred             CchH-HhhhhcEEEEEe----------ecceEEEEeCCCchHHHHHHHHHcCccEEEEecCC--chhhhhhhccccc
Q 037201          106 GFAD-ELKRAWFCVRNV----------RFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMS--DGALKRIANAFFS  169 (177)
Q Consensus       106 gLa~-eLrRAGv~Vr~V----------~v~clvLVSDdsdf~~~lr~Ar~r~l~TVVVGd~~--~~~L~r~Ad~~~s  169 (177)
                      |+.+ .+....+-|+..          .+|+++|+|=|.||..+++.|+++|.+|+|+|-+.  -.+|...||-+..
T Consensus        83 ~~~~~~~~k~~vDv~la~D~~~l~~~~~~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~~~s~~L~~~aD~~i~  159 (181)
T COG1432          83 GFTDLRITKGDVDVELAVDAMELADKKNVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEPMTSSDLRNAADYYID  159 (181)
T ss_pred             ccCcccccccCcchhhHHHHHHhhcccCCCEEEEEcCCccHHHHHHHHHHcCCEEEEEecCCcCHHHHHHhhcceEE
Confidence            5556 777777777777          89999999999999999999999999999999864  2389999986544

>cd05013 SIS_RpiR RpiR-like protein

Probab=96.40  E-value=0.01  Score=42.83  Aligned_cols=62  Identities=21%  Similarity=0.162  Sum_probs=48.3

Q ss_pred             hHHhhhhcEEEEEe--------------ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          108 ADELKRAWFCVRNV--------------RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       108 a~eLrRAGv~Vr~V--------------~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      +.-|++.|..+..+              .-||++++|-.   .+..++++.|+++|.++|+|.+..+..|.+.+|..|.
T Consensus        32 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~  110 (139)
T cd05013          32 AYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLL  110 (139)
T ss_pred             HHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEE
Confidence            34455666666665              45788888854   4477788999999999999999888899999998764

RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.26  E-value=0.0024  Score=34.45  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=19.3

Q ss_pred             hhhhcCCCcCChhHHHHHHHhhh
Q 037201           48 LLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        48 Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      -|..||..|++...|..|.++-|
T Consensus         2 ~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    2 QCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             E-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCcCCCCcCCcHHHHHHHHHhhC
Confidence            38999999999999999999876

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.23  E-value=0.0023  Score=35.46  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=20.2

Q ss_pred             hhhhcCCCcCChhHHHHHHHhhh
Q 037201           48 LLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        48 Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      .|..||+.|++...|.+|-+. |
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~-H   23 (23)
T PF00096_consen    2 KCPICGKSFSSKSNLKRHMRR-H   23 (23)
T ss_dssp             EETTTTEEESSHHHHHHHHHH-H
T ss_pred             CCCCCCCccCCHHHHHHHHhH-C
Confidence            389999999999999999887 6

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>cd05014 SIS_Kpsf KpsF-like protein

Probab=96.18  E-value=0.014  Score=42.83  Aligned_cols=50  Identities=6%  Similarity=0.256  Sum_probs=43.5

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccchh
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWS  171 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~sW~  171 (177)
                      .-|+++++|-.   .+..++++.|+++|.++|+|-+..+..|.+.||..|...
T Consensus        47 ~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~   99 (128)
T cd05014          47 PGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLP   99 (128)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECC
Confidence            45788888854   788899999999999999999998899999999988663

KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.

>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI)

Probab=95.33  E-value=0.05  Score=42.98  Aligned_cols=62  Identities=21%  Similarity=0.193  Sum_probs=50.7

Q ss_pred             HHhhhhcEEEEEe---------ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccch
Q 037201          109 DELKRAWFCVRNV---------RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSW  170 (177)
Q Consensus       109 ~eLrRAGv~Vr~V---------~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~sW  170 (177)
                      ..|.+.|..|..+         .-|+++.+|-.   .+..++++.|+++|.++|.|-|..+..|.+.||..|..
T Consensus        53 ~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~  126 (179)
T cd05005          53 MRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVI  126 (179)
T ss_pred             HHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEe
Confidence            3466677777665         56788889855   67778889999999999999998888999999998754

PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.79  E-value=0.016  Score=34.07  Aligned_cols=19  Identities=26%  Similarity=0.273  Sum_probs=16.9

Q ss_pred             hhhcCCCcCChhHHHHHHHh
Q 037201           49 LIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        49 c~~CGrrf~t~~~L~kHFkq   68 (177)
                      |+.|||+| ..+.|.+|.+.
T Consensus         5 C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    5 CPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CCCCCCEE-CHHHHHHHHHh
Confidence            99999999 88999999763

>PF01380 SIS: SIS domain SIS domain web page

Probab=94.69  E-value=0.064  Score=38.84  Aligned_cols=47  Identities=17%  Similarity=0.316  Sum_probs=39.5

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhcccc
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFF  168 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~  168 (177)
                      .-|+++++|-+   .+..+.++.|+++|.++|+|-+..+..+.+.||.-|
T Consensus        53 ~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l  102 (131)
T PF01380_consen   53 PDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVL  102 (131)
T ss_dssp             TTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEE
T ss_pred             ccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEE
Confidence            56889999943   456677888999999999999988899999998765

; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....

>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

Probab=94.50  E-value=0.077  Score=38.77  Aligned_cols=48  Identities=15%  Similarity=0.193  Sum_probs=39.9

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      .-|.++.+|-.   .+-.++++.|+++|.++|.|-+..+..|.+.||..|.
T Consensus        46 ~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~   96 (126)
T cd05008          46 EDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLY   96 (126)
T ss_pred             CCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEE
Confidence            45778888854   4566778889999999999999888899999998763

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont

>smart00355 ZnF_C2H2 zinc finger

Probab=93.93  E-value=0.039  Score=29.61  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=19.9

Q ss_pred             hhhcCCCcCChhHHHHHHHhhhh
Q 037201           49 LIRNQGRFYNNDKLVNHFRQIHE   71 (177)
Q Consensus        49 c~~CGrrf~t~~~L~kHFkqlHe   71 (177)
                      |..|+..|.+...|..|.+ +|.
T Consensus         3 C~~C~~~f~~~~~l~~H~~-~H~   24 (26)
T smart00355        3 CPECGKVFKSKSALKEHMR-THX   24 (26)
T ss_pred             CCCCcchhCCHHHHHHHHH-Hhc
Confidence            8899999999999999987 664

>PRK11557 putative DNA-binding transcriptional regulator; Provisional

Probab=93.71  E-value=0.16  Score=42.56  Aligned_cols=83  Identities=18%  Similarity=0.130  Sum_probs=64.1

Q ss_pred             chHHHHHHHHhhcCCCC----CCCc--------hHHhhhhcEEEEEe--------------ecceEEEEeC---CCchHH
Q 037201           87 KMEKYKMAVSAILTPKV----GYGF--------ADELKRAWFCVRNV--------------RFGCLMVVSD---DSNFVE  137 (177)
Q Consensus        87 K~~KY~~Aar~vl~pkv----gygL--------a~eLrRAGv~Vr~V--------------~v~clvLVSD---dsdf~~  137 (177)
                      ..++.++++..+...+.    |.|.        +..|.+.|..+...              .-|+++.+|=   ..+..+
T Consensus       114 ~~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~  193 (278)
T PRK11557        114 SEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELNL  193 (278)
T ss_pred             CHHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHHH
Confidence            35778888887766664    6663        34567889888765              4577888884   355667


Q ss_pred             HHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          138 VFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       138 ~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      +++.|+++|.++|+|-|..+..+.+.||.-|.
T Consensus       194 ~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~  225 (278)
T PRK11557        194 AADEALRVGAKVLAITGFTPNALQQRASHCLY  225 (278)
T ss_pred             HHHHHHHcCCCEEEEcCCCCCchHHhCCEEEE
Confidence            88999999999999999988999999998773

>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase

Probab=93.69  E-value=0.23  Score=39.00  Aligned_cols=59  Identities=19%  Similarity=0.219  Sum_probs=47.3

Q ss_pred             HhhhhcEEEEEe---------ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhcccc
Q 037201          110 ELKRAWFCVRNV---------RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFF  168 (177)
Q Consensus       110 eLrRAGv~Vr~V---------~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~  168 (177)
                      -|.+.|..+..+         .-|+++++|-.   .+..++++.|+++|.++|+|-|..+..|.+.||.-|
T Consensus        51 ~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l  121 (179)
T TIGR03127        51 RLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVV  121 (179)
T ss_pred             HHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEE
Confidence            356667766555         45778888854   567788888999999999999988899999999866

Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.

>cd05710 SIS_1 A subgroup of the SIS domain

Probab=93.38  E-value=0.16  Score=37.96  Aligned_cols=48  Identities=15%  Similarity=0.173  Sum_probs=40.3

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      .-|+++.+|-.   .+-.++++.|+++|.++|.|-+..+..|.+.||..|.
T Consensus        47 ~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~   97 (120)
T cd05710          47 EKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIV   97 (120)
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEE
Confidence            34788888855   6777888889999999999999888899999998663

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.

>PRK15482 transcriptional regulator MurR; Provisional

Probab=93.28  E-value=0.23  Score=41.96  Aligned_cols=82  Identities=15%  Similarity=0.204  Sum_probs=63.2

Q ss_pred             hHHHHHHHHhhcCCCC----CCCc--------hHHhhhhcEEEEEe--------------ecceEEEEeCC---CchHHH
Q 037201           88 MEKYKMAVSAILTPKV----GYGF--------ADELKRAWFCVRNV--------------RFGCLMVVSDD---SNFVEV  138 (177)
Q Consensus        88 ~~KY~~Aar~vl~pkv----gygL--------a~eLrRAGv~Vr~V--------------~v~clvLVSDd---sdf~~~  138 (177)
                      .+.+++++..+...+.    |.|.        .--|.+.|..|...              .-|+++.+|-.   .+..++
T Consensus       122 ~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~~~~~~  201 (285)
T PRK15482        122 YARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLC  201 (285)
T ss_pred             HHHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCHHHHHH
Confidence            4577788877766553    5553        33456788888765              34889999954   667788


Q ss_pred             HHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          139 FQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       139 lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      ++.|+++|.++|.|-|..+..|.+.||.-|.
T Consensus       202 ~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~  232 (285)
T PRK15482        202 AEAARKQGATVIAITSLADSPLRRLAHFTLD  232 (285)
T ss_pred             HHHHHHCCCEEEEEeCCCCCchHHhCCEEEE
Confidence            8889999999999999988899999998764

>TIGR00441 gmhA phosphoheptose isomerase

Probab=93.24  E-value=0.14  Score=40.10  Aligned_cols=47  Identities=15%  Similarity=0.253  Sum_probs=39.7

Q ss_pred             cceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          123 FGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       123 v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      -|.++++|-.   .+-.++++.|+++|+++|.|-+..+..|.+.||.-|.
T Consensus        80 ~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~  129 (154)
T TIGR00441        80 GDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELR  129 (154)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence            3788999955   5666788889999999999999888899999998764

Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.

>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional

Probab=93.22  E-value=0.24  Score=41.82  Aligned_cols=82  Identities=15%  Similarity=0.255  Sum_probs=62.8

Q ss_pred             hHHHHHHHHhhcCCCC----CCC--------chHHhhhhcEEEEEe--------------ecceEEEEeCC---CchHHH
Q 037201           88 MEKYKMAVSAILTPKV----GYG--------FADELKRAWFCVRNV--------------RFGCLMVVSDD---SNFVEV  138 (177)
Q Consensus        88 ~~KY~~Aar~vl~pkv----gyg--------La~eLrRAGv~Vr~V--------------~v~clvLVSDd---sdf~~~  138 (177)
                      .+..++++..+...+.    |.|        ++..|.|.|+.+..+              .-|++|++|-.   .+..++
T Consensus       127 ~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~~~~~~  206 (292)
T PRK11337        127 VDEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTSDVIEA  206 (292)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHH
Confidence            4667777776665543    655        234567888888755              34778888864   568888


Q ss_pred             HHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          139 FQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       139 lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      ++.|+++|.++|+|-|..+..|.+.||.-|.
T Consensus       207 ~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~  237 (292)
T PRK11337        207 VELAKKNGAKIICITNSYHSPIAKLADYVIC  237 (292)
T ss_pred             HHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence            9999999999999999988999999998774

>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily

Probab=91.96  E-value=0.28  Score=38.63  Aligned_cols=48  Identities=19%  Similarity=0.245  Sum_probs=39.8

Q ss_pred             cceEEEEeC---CCchHHHHHHHHHcCccEEEEecCCchhhhhhhccccch
Q 037201          123 FGCLMVVSD---DSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSW  170 (177)
Q Consensus       123 v~clvLVSD---dsdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~sW  170 (177)
                      -|++|++|-   ..+-.++++.|+++|+++|.|-+..+..|.+.||.-|.-
T Consensus       102 ~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~  152 (177)
T cd05006         102 GDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHV  152 (177)
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence            467778874   456778888999999999999998888999999987753

Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).

>PRK13937 phosphoheptose isomerase; Provisional

Probab=91.72  E-value=0.31  Score=39.45  Aligned_cols=48  Identities=15%  Similarity=0.239  Sum_probs=40.7

Q ss_pred             cceEEEEe---CCCchHHHHHHHHHcCccEEEEecCCchhhhhhhccccch
Q 037201          123 FGCLMVVS---DDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSW  170 (177)
Q Consensus       123 v~clvLVS---Ddsdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~sW  170 (177)
                      -|+++.+|   ...+-.++++.|+++|.+||.|-+..+..|.+.||..+..
T Consensus       107 ~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~  157 (188)
T PRK13937        107 GDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIV  157 (188)
T ss_pred             CCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence            37888888   4577788899999999999999887778999999987753

>PRK13936 phosphoheptose isomerase; Provisional

Probab=90.49  E-value=0.46  Score=38.85  Aligned_cols=48  Identities=17%  Similarity=0.279  Sum_probs=39.8

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhh---hccccc
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRI---ANAFFS  169 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~---Ad~~~s  169 (177)
                      .=|+++++|-.   .+..++++.|+++|+++|.|.+..++.|.+.   ||..+.
T Consensus       111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~  164 (197)
T PRK13936        111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIR  164 (197)
T ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEE
Confidence            35889999955   6778889999999999999999877888885   887663

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=90.34  E-value=0.67  Score=38.18  Aligned_cols=49  Identities=10%  Similarity=0.178  Sum_probs=42.6

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccch
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSW  170 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~sW  170 (177)
                      .-|+++.+|-.   .+-.++++.|+++|.++|.|-+.....|...||..|..
T Consensus        47 ~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~   98 (268)
T TIGR00393        47 PNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDI   98 (268)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEc
Confidence            44788899865   66778889999999999999998888999999999876

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK00414 gmhA phosphoheptose isomerase; Reviewed

Probab=89.67  E-value=0.61  Score=38.16  Aligned_cols=45  Identities=16%  Similarity=0.338  Sum_probs=39.3

Q ss_pred             ceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhcccc
Q 037201          124 GCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFF  168 (177)
Q Consensus       124 ~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~  168 (177)
                      |+++.+|-.   .+-.++++.|+++|++||.|-...+..|.+.||.-+
T Consensus       113 Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l  160 (192)
T PRK00414        113 DVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEI  160 (192)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEE
Confidence            788889955   677788899999999999999887889999999865

>PHA00616 hypothetical protein

Probab=89.57  E-value=0.15  Score=34.34  Aligned_cols=26  Identities=19%  Similarity=0.448  Sum_probs=22.7

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      ..|+.||..|.....|.+|-++-|-.
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~   27 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQ   27 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCC
Confidence            34999999999999999999887754

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=89.08  E-value=0.12  Score=30.04  Aligned_cols=22  Identities=14%  Similarity=0.208  Sum_probs=19.8

Q ss_pred             hhhhhcCCCcCChhHHHHHHHh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkq   68 (177)
                      +.|..|++.|.+...|..|.+.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5699999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=88.86  E-value=1  Score=38.69  Aligned_cols=60  Identities=8%  Similarity=0.120  Sum_probs=49.6

Q ss_pred             HHhhhhcEEEEEe--------------ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhcccc
Q 037201          109 DELKRAWFCVRNV--------------RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFF  168 (177)
Q Consensus       109 ~eLrRAGv~Vr~V--------------~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~  168 (177)
                      ..|-+.|..+..+              .-|+++.+|-.   .+..++++.|+++|.++|.|-+..+..|.+.||..|
T Consensus        67 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l  143 (326)
T PRK10892         67 ATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHL  143 (326)
T ss_pred             HHHhcCCceeEEeChHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEE
Confidence            3455677766654              34788999964   778889999999999999999998899999999987

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=88.20  E-value=0.21  Score=27.92  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=18.8

Q ss_pred             hhhhcCCCcCChhHHHHHHHh
Q 037201           48 LLIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        48 Lc~~CGrrf~t~~~L~kHFkq   68 (177)
                      .|.+|+..|.+...|..|++-
T Consensus         2 ~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCcCCHHHHHHHHCc
Confidence            389999999999999999863

>smart00451 ZnF_U1 U1-like zinc finger

Probab=87.45  E-value=0.45  Score=28.27  Aligned_cols=31  Identities=10%  Similarity=0.072  Sum_probs=25.8

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGEQKKR   77 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerEr~Kr   77 (177)
                      +.|..|+..|.+...+..|.+.-.-+++.++
T Consensus         4 ~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             eEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            5699999999999999999988766665544

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=87.40  E-value=0.84  Score=39.68  Aligned_cols=51  Identities=27%  Similarity=0.382  Sum_probs=42.8

Q ss_pred             ecceEEEEeCCCchH-HHHHHHHHcCccEEEEecCCchhhhhhhccccchhhhhcC
Q 037201          122 RFGCLMVVSDDSNFV-EVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMG  176 (177)
Q Consensus       122 ~v~clvLVSDdsdf~-~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~sW~ev~~G  176 (177)
                      ++|-+++=|+..||. .+|+.|+.-.-+.||||...   +.|. .-.|+|..+..|
T Consensus       115 ~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~Na---~~r~-~~~~~w~~~~~~  166 (218)
T PF07279_consen  115 GIDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYNA---FSRS-TNGFSWRSVLRG  166 (218)
T ss_pred             CCCEEEEeCCchhHHHHHHHHhccCCCceEEEEecc---ccCC-cCCccHHHhcCC
Confidence            899999999999999 99999997667899999983   4443 467899988765

The function of this family is unknown.

>PHA02768 hypothetical protein; Provisional

Probab=87.08  E-value=0.37  Score=33.74  Aligned_cols=23  Identities=13%  Similarity=0.267  Sum_probs=20.3

Q ss_pred             hhhhcCCCcCChhHHHHHHHhhhh
Q 037201           48 LLIRNQGRFYNNDKLVNHFRQIHE   71 (177)
Q Consensus        48 Lc~~CGrrf~t~~~L~kHFkqlHe   71 (177)
                      -|..||++|.....|..|-+. |.
T Consensus         7 ~C~~CGK~Fs~~~~L~~H~r~-H~   29 (55)
T PHA02768          7 ECPICGEIYIKRKSMITHLRK-HN   29 (55)
T ss_pred             CcchhCCeeccHHHHHHHHHh-cC
Confidence            399999999999999999877 55

>PRK13938 phosphoheptose isomerase; Provisional

Probab=87.03  E-value=0.8  Score=38.09  Aligned_cols=50  Identities=16%  Similarity=0.165  Sum_probs=40.3

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccchh
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWS  171 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~sW~  171 (177)
                      .-|.++.+|-.   .+-.++++.|+++|+++|.+.+..++.|.+.||.-+...
T Consensus       113 ~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~  165 (196)
T PRK13938        113 PGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVP  165 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeC
Confidence            44778888875   345577788899999999999988899999999877543

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=86.96  E-value=1.5  Score=37.30  Aligned_cols=79  Identities=16%  Similarity=0.156  Sum_probs=58.5

Q ss_pred             HHHHHHHhhcCCC--C---CCCc--------hHHhhhhcEEEEEe--------------ecceEEEEeCC---CchHHHH
Q 037201           90 KYKMAVSAILTPK--V---GYGF--------ADELKRAWFCVRNV--------------RFGCLMVVSDD---SNFVEVF  139 (177)
Q Consensus        90 KY~~Aar~vl~pk--v---gygL--------a~eLrRAGv~Vr~V--------------~v~clvLVSDd---sdf~~~l  139 (177)
                      ...+++..++..+  +   |.|-        +.-|-+.|..+..+              .-|+++.+|-.   .+-.+++
T Consensus        30 ~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~  109 (321)
T PRK11543         30 DFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLII  109 (321)
T ss_pred             HHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHHHHHHH
Confidence            4666666666643  3   5552        34456678876655              44788888876   5566778


Q ss_pred             HHHHHcCccEEEEecCCchhhhhhhcccc
Q 037201          140 QEATLRCLKMVVVGDMSDGALKRIANAFF  168 (177)
Q Consensus       140 r~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~  168 (177)
                      +.|+++|.++|.|-+..+..|.+.||.-|
T Consensus       110 ~~ak~~g~~vI~iT~~~~s~la~~ad~~l  138 (321)
T PRK11543        110 PRLEDKSIALLAMTGKPTSPLGLAAKAVL  138 (321)
T ss_pred             HHHHHcCCeEEEEECCCCChhHHhCCEEE
Confidence            88889999999999988899999999877

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=86.17  E-value=2.9  Score=39.87  Aligned_cols=82  Identities=15%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             chHHHHHHHHhhcCCCC----CCCc--------hHHhhhhcEEEEEe--------------ecceEEEEeCCC---chHH
Q 037201           87 KMEKYKMAVSAILTPKV----GYGF--------ADELKRAWFCVRNV--------------RFGCLMVVSDDS---NFVE  137 (177)
Q Consensus        87 K~~KY~~Aar~vl~pkv----gygL--------a~eLrRAGv~Vr~V--------------~v~clvLVSDds---df~~  137 (177)
                      ..+.+++++..+...+.    |+|-        ...|.|.|+.+...              .-|++|++|-.-   +..+
T Consensus       454 d~~~l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~d~~~~~~~~~~l~~~DvvI~iS~sG~t~e~i~  533 (638)
T PRK14101        454 NFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLR  533 (638)
T ss_pred             CHHHHHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcCCceEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHH
Confidence            45778888888776665    6664        33567788887755              348899999754   4567


Q ss_pred             HHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          138 VFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       138 ~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      +++.|+++|.++|.|-|. +..|.+.||.-|+
T Consensus       534 ~~~~Ak~~Ga~vIaIT~~-~spLa~~aD~~L~  564 (638)
T PRK14101        534 VLDVAMQAGAKVIAITSS-NTPLAKRATVALE  564 (638)
T ss_pred             HHHHHHHCCCeEEEEcCC-CChhHhhCCEEEE
Confidence            778888999999999996 6899999998764

>PRK11302 DNA-binding transcriptional regulator HexR; Provisional

Probab=86.13  E-value=1.2  Score=37.09  Aligned_cols=81  Identities=19%  Similarity=0.165  Sum_probs=57.9

Q ss_pred             hHHHHHHHHhhcCCCC----CCCchHH--------hhhhcEEEEEe--------------ecceEEEEeCC---CchHHH
Q 037201           88 MEKYKMAVSAILTPKV----GYGFADE--------LKRAWFCVRNV--------------RFGCLMVVSDD---SNFVEV  138 (177)
Q Consensus        88 ~~KY~~Aar~vl~pkv----gygLa~e--------LrRAGv~Vr~V--------------~v~clvLVSDd---sdf~~~  138 (177)
                      .+..++++..+...+-    |.|-..-        |-|-|+.+...              .-|+++++|-.   .+..++
T Consensus       115 ~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~~~~  194 (284)
T PRK11302        115 PSAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRFNVPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRTKSLVEL  194 (284)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHhcCCceEecCCHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHH
Confidence            4567777777665554    6554222        55677766654              34677888754   356667


Q ss_pred             HHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          139 FQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       139 lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      ++.|+++|.++|+|.+ .+..|.+.||.-|.
T Consensus       195 ~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~  224 (284)
T PRK11302        195 AQLARENGATVIAITS-AGSPLAREATLALT  224 (284)
T ss_pred             HHHHHHcCCeEEEECC-CCChhHHhCCEEEe
Confidence            8888999999999998 56899999998774

>PRK02947 hypothetical protein; Provisional

Probab=86.01  E-value=1.2  Score=37.76  Aligned_cols=48  Identities=25%  Similarity=0.302  Sum_probs=39.5

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCC-----------chhhhhhhccccc
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMS-----------DGALKRIANAFFS  169 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~-----------~~~L~r~Ad~~~s  169 (177)
                      .-|+++++|-.   .+-.++++.|+++|.++|.|-+..           +..|.+.||+-+.
T Consensus       106 ~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~  167 (246)
T PRK02947        106 PGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD  167 (246)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence            45889999954   667778889999999999999975           3699999998763

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.91  E-value=0.49  Score=33.37  Aligned_cols=24  Identities=13%  Similarity=-0.029  Sum_probs=19.2

Q ss_pred             hhhhcCCCcCChhHHHHHHHhhhh
Q 037201           48 LLIRNQGRFYNNDKLVNHFRQIHE   71 (177)
Q Consensus        48 Lc~~CGrrf~t~~~L~kHFkqlHe   71 (177)
                      -|+.||+-++...+|.+|.+--|.
T Consensus        26 tCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   26 TCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             E-TTT--EESSHHHHHHHHHHHTT
T ss_pred             CCCcchhhccchhhHHHHHHHHhc
Confidence            499999999999999999988875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=85.76  E-value=0.3  Score=27.72  Aligned_cols=22  Identities=18%  Similarity=0.018  Sum_probs=19.2

Q ss_pred             hhhhhcCCCcCChhHHHHHHHh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkq   68 (177)
                      +.|..|+..|.+...|..|-+.
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCccCCccCChhHHHHHhHH
Confidence            3499999999999999999754

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=85.25  E-value=0.48  Score=31.56  Aligned_cols=28  Identities=21%  Similarity=0.196  Sum_probs=24.1

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGEQK   75 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerEr~   75 (177)
                      +.|+.||. --+...|..|..+-|..+..
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~   30 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESK   30 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCC
Confidence            56999999 57789999999999998754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators

Probab=85.06  E-value=1.7  Score=34.26  Aligned_cols=51  Identities=12%  Similarity=0.055  Sum_probs=34.9

Q ss_pred             CCchHHhhhhcEEEEEe--------------------ecceEEEEeCCCchHHHHHHHHHcCccEEEEecC
Q 037201          105 YGFADELKRAWFCVRNV--------------------RFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDM  155 (177)
Q Consensus       105 ygLa~eLrRAGv~Vr~V--------------------~v~clvLVSDdsdf~~~lr~Ar~r~l~TVVVGd~  155 (177)
                      .|+..+++..|+.+...                    ++|.|++++.+.+..++++.+.+.++..|+|+-.
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i~~~   89 (270)
T cd01545          19 LGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPG   89 (270)
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhcCCCEEEEecC
Confidence            35556666666665544                    6788888765544567788888888888888643

Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=84.53  E-value=2.3  Score=33.73  Aligned_cols=50  Identities=10%  Similarity=0.026  Sum_probs=37.8

Q ss_pred             CchHHhhhhcEEEEEe-------------------ecceEEEEeCCCc-hHHHHHHHHHcCccEEEEecC
Q 037201          106 GFADELKRAWFCVRNV-------------------RFGCLMVVSDDSN-FVEVFQEATLRCLKMVVVGDM  155 (177)
Q Consensus       106 gLa~eLrRAGv~Vr~V-------------------~v~clvLVSDdsd-f~~~lr~Ar~r~l~TVVVGd~  155 (177)
                      |+..+++..|+.+...                   ++|.||+.+.+++ ..++++.+.++|+..|.++..
T Consensus        20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~~   89 (273)
T cd06305          20 GTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVD   89 (273)
T ss_pred             HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEecCC
Confidence            4456666666666554                   8999999875544 578899999999999999764

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=83.44  E-value=3  Score=32.68  Aligned_cols=34  Identities=12%  Similarity=0.092  Sum_probs=26.0

Q ss_pred             ecceEEEEeCCCchHHHHHHHHHcCccEEEEecC
Q 037201          122 RFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDM  155 (177)
Q Consensus       122 ~v~clvLVSDdsdf~~~lr~Ar~r~l~TVVVGd~  155 (177)
                      ++|.+++.+.+.+..++++.++++|+..|+++..
T Consensus        55 ~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~   88 (266)
T cd06282          55 RVDGLILTVADAATSPALDLLDAERVPYVLAYND   88 (266)
T ss_pred             CCCEEEEecCCCCchHHHHHHhhCCCCEEEEecc
Confidence            6888888776655556788888889998888654

This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=83.35  E-value=0.65  Score=32.11  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=20.5

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      +.|..|+..|++...|..|.+.-|
T Consensus        51 ~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   51 FRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             EEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCccCCCCcCHHHHHHHHcCcc
Confidence            559999999999999999999753

>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=82.07  E-value=3.4  Score=32.45  Aligned_cols=50  Identities=14%  Similarity=0.137  Sum_probs=36.2

Q ss_pred             CCchHHhhhhcEEEEEe-------------------ecceEEEEeCCCchHHHHHHHHHcCccEEEEecC
Q 037201          105 YGFADELKRAWFCVRNV-------------------RFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDM  155 (177)
Q Consensus       105 ygLa~eLrRAGv~Vr~V-------------------~v~clvLVSDdsdf~~~lr~Ar~r~l~TVVVGd~  155 (177)
                      .|+..++++.|+.+...                   ++|.+|+.+.+.+ .++++.+++.+...|++|..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~~-~~~~~~~~~~~ipvv~~~~~   87 (259)
T cd01542          19 KGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATTIT-DEHREAIKKLNVPVVVVGQD   87 (259)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHhcCCCCEEEEecc
Confidence            45566677777766554                   7888888876543 46778888888999999764

Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh

>COG1737 RpiR Transcriptional regulators [Transcription]

Probab=81.87  E-value=3.5  Score=35.46  Aligned_cols=83  Identities=23%  Similarity=0.248  Sum_probs=63.0

Q ss_pred             hHHHHHHHHhhcCCCC----CCCc--------hHHhhhhcEEEEEe--------------ecceEEEEeCC---CchHHH
Q 037201           88 MEKYKMAVSAILTPKV----GYGF--------ADELKRAWFCVRNV--------------RFGCLMVVSDD---SNFVEV  138 (177)
Q Consensus        88 ~~KY~~Aar~vl~pkv----gygL--------a~eLrRAGv~Vr~V--------------~v~clvLVSDd---sdf~~~  138 (177)
                      .+..++|+..+...+.    |.|.        +--|-|-|+.|..+              .-|++|.+|-.   .+-.++
T Consensus       117 ~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~  196 (281)
T COG1737         117 EEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEA  196 (281)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHH
Confidence            5778888888887773    5553        33467788888887              44556666654   345667


Q ss_pred             HHHHHHcCccEEEEecCCchhhhhhhccccch
Q 037201          139 FQEATLRCLKMVVVGDMSDGALKRIANAFFSW  170 (177)
Q Consensus       139 lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~sW  170 (177)
                      ++.|+++|.++|.|=|..+..|.+.||..+.=
T Consensus       197 a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~  228 (281)
T COG1737         197 AELAKERGAKVIAITDSADSPLAKLADIVLLV  228 (281)
T ss_pred             HHHHHHCCCcEEEEcCCCCCchhhhhceEEec
Confidence            78889999999999999889999999998753

>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=81.72  E-value=2.4  Score=37.29  Aligned_cols=49  Identities=8%  Similarity=0.034  Sum_probs=42.2

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccch
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSW  170 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~sW  170 (177)
                      .-|++|.+|-.   .+..++++.|+++|.+||.|-+..+..|.+.||+-+.-
T Consensus       131 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~  182 (299)
T PRK05441        131 AKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEV  182 (299)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEc
Confidence            45888888865   67888999999999999999998888999999987753

>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators

Probab=81.18  E-value=3.9  Score=32.66  Aligned_cols=32  Identities=16%  Similarity=0.202  Sum_probs=20.9

Q ss_pred             ecceEEEEeCCCchHHHHHHHHHcCccEEEEec
Q 037201          122 RFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGD  154 (177)
Q Consensus       122 ~v~clvLVSDdsdf~~~lr~Ar~r~l~TVVVGd  154 (177)
                      ++|.|++++.+.+ ...++.+.+.|+.+|++|-
T Consensus        64 ~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~   95 (275)
T cd06295          64 RADGVILIGQHDQ-DPLPERLAETGLPFVVWGR   95 (275)
T ss_pred             CCCEEEEeCCCCC-hHHHHHHHhCCCCEEEECC
Confidence            6777777665433 4556777777777777753

This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang

>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase

Probab=80.90  E-value=2.8  Score=35.91  Aligned_cols=48  Identities=8%  Similarity=0.089  Sum_probs=40.9

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      .-|++|.+|-.   ++..++++.|+++|..||.|....+..|.+.||.-+.
T Consensus       118 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~  168 (257)
T cd05007         118 ERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIA  168 (257)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEE
Confidence            56888888854   6778889999999999999998888899999998663

Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=80.76  E-value=3.8  Score=27.86  Aligned_cols=48  Identities=21%  Similarity=0.217  Sum_probs=33.5

Q ss_pred             CCchHHhhhhcEEEEEe---------ecceEEEEeCCCchHH-----HHHHHHHcCccEEEEe
Q 037201          105 YGFADELKRAWFCVRNV---------RFGCLMVVSDDSNFVE-----VFQEATLRCLKMVVVG  153 (177)
Q Consensus       105 ygLa~eLrRAGv~Vr~V---------~v~clvLVSDdsdf~~-----~lr~Ar~r~l~TVVVG  153 (177)
                      |.++..|++.|+.|+.+         .-..|++++.+..+.+     -|...-++| .|+||-
T Consensus         8 ~a~~~~L~~~g~~v~~~~~~~~~l~~~~~tll~i~~~~~~~~~~~~~~l~~~v~~G-~~lvl~   69 (70)
T PF14258_consen    8 YALYQLLEEQGVKVERWRKPYEALEADDGTLLVIGPDLRLSEPEEAEALLEWVEAG-NTLVLA   69 (70)
T ss_pred             HHHHHHHHHCCCeeEEecccHHHhCCCCCEEEEEeCCCCCCchHHHHHHHHHHHcC-CEEEEe
Confidence            44678899999999977         4556888888866653     444444577 666654

>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=80.71  E-value=4.2  Score=32.44  Aligned_cols=51  Identities=18%  Similarity=0.230  Sum_probs=36.2

Q ss_pred             CchHHhhhhcEEEEEe-------------------ecceEEEEeCCCchHHHHHHHHHcCccEEEEecCC
Q 037201          106 GFADELKRAWFCVRNV-------------------RFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMS  156 (177)
Q Consensus       106 gLa~eLrRAGv~Vr~V-------------------~v~clvLVSDdsdf~~~lr~Ar~r~l~TVVVGd~~  156 (177)
                      |+..+++..|+.+-..                   ++|.+++++.+.+-.++++.++++++..|+++...
T Consensus        20 ~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~i~~~~   89 (269)
T cd06281          20 GAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIVLLDRDM   89 (269)
T ss_pred             HHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCCCEEEEeccc
Confidence            4556666667666543                   78888888765555667888888888888887543

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>TIGR00274 N-acetylmuramic acid 6-phosphate etherase

Probab=80.61  E-value=2.8  Score=36.91  Aligned_cols=49  Identities=10%  Similarity=0.027  Sum_probs=41.7

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccch
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSW  170 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~sW  170 (177)
                      .-|++|.+|-.   .+..++++.|+++|.+||.|....+..|.+.||+.+.-
T Consensus       126 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~  177 (291)
T TIGR00274       126 KNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET  177 (291)
T ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEec
Confidence            45889999865   56778899999999999999988778999999998764

This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.

>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily

Probab=80.07  E-value=3.6  Score=33.08  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=28.3

Q ss_pred             ecceEEEEeCCCch-HHHHHHHHHcCccEEEEecC
Q 037201          122 RFGCLMVVSDDSNF-VEVFQEATLRCLKMVVVGDM  155 (177)
Q Consensus       122 ~v~clvLVSDdsdf-~~~lr~Ar~r~l~TVVVGd~  155 (177)
                      ++|-||+.+.|++. .++++.+.+.|+..|++++.
T Consensus        54 ~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~   88 (289)
T cd01540          54 GAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVDDR   88 (289)
T ss_pred             CCCEEEEccCchhhhHHHHHHHHhCCCeEEEecCC
Confidence            78999998877654 55789999999999999854

Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=80.07  E-value=3.2  Score=32.87  Aligned_cols=50  Identities=18%  Similarity=0.203  Sum_probs=40.3

Q ss_pred             CchHHhhhhcEEEEEe--------------------ecceEEEE-eCCCchHHHHHHHHHcCccEEEEecC
Q 037201          106 GFADELKRAWFCVRNV--------------------RFGCLMVV-SDDSNFVEVFQEATLRCLKMVVVGDM  155 (177)
Q Consensus       106 gLa~eLrRAGv~Vr~V--------------------~v~clvLV-SDdsdf~~~lr~Ar~r~l~TVVVGd~  155 (177)
                      |+..+++.-|+.+..+                    ++|.|++. .|.+...+.|+.|.+.|+..|.+...
T Consensus        19 g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~   89 (257)
T PF13407_consen   19 GAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD   89 (257)
T ss_dssp             HHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred             HHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence            5566777778888884                    99999988 45557889999999999988887655

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
2qip_A	165	Protein of unknown function VPA0982; APC85975, vib	98.31
1paa_A	30	Yeast transcription factor ADR1; transcription reg	96.69
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	96.49
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.48
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	96.4
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	96.36
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.22
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	96.16
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	95.15
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	96.09
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	96.05
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	96.03
1ard_A	29	Yeast transcription factor ADR1; transcription reg	96.03
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.03
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	95.97
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.95
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.94
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	95.93
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.92
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.9
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	95.88
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.87
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	95.87
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.87
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	94.86
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.86
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.86
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.86
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.85
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.83
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.83
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.82
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.81
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	95.8
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	95.8
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.79
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.79
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	95.79
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.78
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	95.78
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.78
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.78
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	95.77
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.76
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	95.76
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	95.76
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	95.75
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	95.75
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.75
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	95.75
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	95.75
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	95.75
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.74
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.74
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.74
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.73
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	95.73
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	95.71
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.71
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.7
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	95.66
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	95.66
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	95.65
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	95.64
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.62
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.61
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	95.6
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.6
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.59
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	95.57
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	95.57
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.56
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	95.56
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	95.56
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	95.56
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	95.53
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.53
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.51
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.5
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	95.5
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.5
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	94.46
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	95.47
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	95.47
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	95.46
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.46
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	95.46
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.44
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	95.44
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	95.44
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.43
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	95.42
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	95.42
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	95.42
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.4
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	95.39
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.39
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	95.39
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	95.38
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	95.36
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	95.34
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.33
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.32
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.26
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	95.26
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.24
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.23
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	95.23
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.17
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.16
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.16
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	95.14
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.12
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.12
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	95.11
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	95.11
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	95.11
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.11
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	95.1
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	95.1
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	95.05
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	95.01
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	94.96
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.94
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.91
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	94.89
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.89
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.79
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.79
3etn_A	220	Putative phosphosugar isomerase involved in capsu	94.77
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	94.76
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	94.68
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	94.65
3sho_A	187	Transcriptional regulator, RPIR family; structural	94.6
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.58
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	94.53
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	94.52
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	94.49
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	94.48
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	94.47
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	94.42
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	94.38
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.28
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	94.24
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	94.13
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	94.07
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	94.06
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	94.05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	94.03
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	93.9
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.85
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	93.73
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	93.68
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	93.6
1jeo_A	180	MJ1247, hypothetical protein MJ1247; RUMP pathway,	93.43
1m3s_A	186	Hypothetical protein YCKF; structural genomics, PS	93.37
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	93.35
2xhz_A	183	KDSD, YRBH, arabinose 5-phosphate isomerase; lipop	93.34
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	93.32
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	93.25
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	93.16
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	93.15
1vim_A	200	Hypothetical protein AF1796; structural genomics,	93.12
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	93.02
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	92.94
1tk9_A	188	Phosphoheptose isomerase 1; lipopolysaccharide bio	92.87
2xbl_A	198	Phosphoheptose isomerase; capsule; HET: M7P PGE PG	92.7
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	92.63
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	92.61
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	92.48
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	92.4
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	92.26
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	92.16
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	92.09
2i2w_A	212	Phosphoheptose isomerase; lipopolysaccharide biosy	91.88
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	91.87
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	91.79
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	91.7
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	91.69
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	91.56
3fxa_A	201	SIS domain protein; structural genomics, joint cen	91.43
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	91.17
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	91.12
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	90.98
1x92_A	199	APC5045, phosphoheptose isomerase; midwest centre	90.87
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	90.87
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	90.68
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	90.67
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	90.46
3trj_A	201	Phosphoheptose isomerase; lipopolysaccharide biosy	90.37
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	90.28
2yva_A	196	DNAA initiator-associating protein DIAA; intermole	90.14
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	90.13
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	90.1
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	90.07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	90.06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	89.98
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	89.87
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	89.8
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	89.64
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	89.54
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	89.38
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	89.25
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	89.09
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	89.02
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	88.7
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	88.6
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	88.41
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	88.19
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	87.57
1j5x_A	342	Glucosamine-6-phosphate deaminase; structural geno	87.5
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	87.33
2epa_A	72	Krueppel-like factor 10; transforming growth facto	86.85
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	86.79
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	86.7
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	86.69
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	86.42
3cvj_A	243	Putative phosphoheptose isomerase; rossman fold, 3	86.33
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	86.13
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	86.11
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	85.95
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	85.77
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	85.45
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	85.25
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	84.97
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	84.6
2zj3_A	375	Glucosamine--fructose-6-phosphate aminotransferase	84.51
2l82_A	162	Designed protein OR32; structural genomics, northe	84.34
1nri_A	306	Hypothetical protein HI0754; structural genomics,	84.07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	83.42
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	83.13
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	82.46
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	82.41
2a3n_A	355	Putative glucosamine-fructose-6-phosphate aminotr;	82.34
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	82.24
2aml_A	373	SIS domain protein; 46906266, LMO0035 protein, str	81.93
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	81.81
2poc_A	367	D-fructose-6- PH, isomerase domain of glutamine-fr	81.65
3jy6_A	276	Transcriptional regulator, LACI family; NYSGXRC, P	81.35
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	81.15
3eua_A	329	Putative fructose-aminoacid-6-phosphate deglycase;	80.71
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	80.58
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	80.36
3g68_A	352	Putative phosphosugar isomerase; SIS domain, doubl	80.06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	80.06

>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}

Probab=98.31  E-value=8.1e-07  Score=68.81  Aligned_cols=53  Identities=23%  Similarity=0.296  Sum_probs=47.2

Q ss_pred             ecceEEEEeCCCchHHHHHHHHHc-CccEEEEecC--Cchhhhhhhccccchhhhh
Q 037201          122 RFGCLMVVSDDSNFVEVFQEATLR-CLKMVVVGDM--SDGALKRIANAFFSWSDLL  174 (177)
Q Consensus       122 ~v~clvLVSDdsdf~~~lr~Ar~r-~l~TVVVGd~--~~~~L~r~Ad~~~sW~ev~  174 (177)
                      .+|.+||||-|+||+++++.+|++ |.+.+|+|=.  ....|.+.||-+++++++.
T Consensus       108 ~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l~~~~  163 (165)
T 2qip_A          108 DVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAIDDDF  163 (165)
T ss_dssp             GCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEECSGGG
T ss_pred             cCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEecchhh
Confidence            789999999999999999999997 9999999942  3368999999999888764

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.69  E-value=0.00033  Score=37.25  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.6

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.|..||+.|.+...|..|...+|..|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            3 YACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             SBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             cCCcccCcccCChHHHHHHHHHHccCC
Confidence            569999999999999999977788655

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=96.49  E-value=0.00058  Score=41.71  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=26.1

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQKK   76 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr~K   76 (177)
                      ++.+.|..||+.|.+...|.+|.+.+|..|...
T Consensus         5 ~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            456789999999999999999998789877554

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.48  E-value=0.00077  Score=37.42  Aligned_cols=29  Identities=17%  Similarity=0.210  Sum_probs=23.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|. ++|..|
T Consensus         7 ~~~~~C~~C~k~f~~~~~l~~H~-~~H~~e   35 (36)
T 2elr_A            7 GKTHLCDMCGKKFKSKGTLKSHK-LLHTAD   35 (36)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHH-HHHSSC
T ss_pred             CCCeecCcCCCCcCchHHHHHHH-HHhcCC
Confidence            35577999999999999999996 456544

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.40  E-value=0.00071  Score=39.82  Aligned_cols=31  Identities=32%  Similarity=0.500  Sum_probs=26.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+.+|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k   40 (47)
T 2epx_A           10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEK   40 (47)
T ss_dssp             CCSBCCSSSCCCBSSHHHHHHHHTTTTTTSC
T ss_pred             CCCEECCccCchhCChHHHHHHhHhhcCCCC
Confidence            3567899999999999999999887887653

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.36  E-value=0.00061  Score=35.74  Aligned_cols=28  Identities=11%  Similarity=0.139  Sum_probs=22.7

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.+.|..||+.|.+...|..|.+ +|..|
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLE-THDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH-TTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHH-HhccC
Confidence            44679999999999999999975 46543

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.22  E-value=0.0019  Score=37.90  Aligned_cols=29  Identities=21%  Similarity=0.184  Sum_probs=24.4

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|.+|. ++|..|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2eov_A           10 EKPYKCSDCGKSFTWKSRLRIHQ-KCHTGE   38 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHH-HHHSCC
T ss_pred             CCCccCCccChhhCCHHHHHHHH-HhcCCC
Confidence            45678999999999999999996 467655

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=96.16  E-value=0.0018  Score=36.24  Aligned_cols=28  Identities=25%  Similarity=0.297  Sum_probs=23.7

Q ss_pred             hhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           46 NCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        46 ~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      .+.|..||..|.+...|..|.+ +|..|+
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~-~H~~~~   29 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT-LHELLG   29 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH-HHTTTC
T ss_pred             cccCCCCCchhCCHHHHHHHHH-HhCCCC
Confidence            3569999999999999999964 787765

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=95.15  E-value=0.00086  Score=35.40  Aligned_cols=28  Identities=36%  Similarity=0.544  Sum_probs=23.0

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.+.|..||+.|.+...|..|-+ +|..|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~-~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVR-IHTGE   29 (30)
Confidence            45779999999999999999965 46554

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=96.09  E-value=0.0012  Score=36.59  Aligned_cols=29  Identities=14%  Similarity=0.224  Sum_probs=23.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+-|..||+.|.+...|..|.+ +|..|
T Consensus         5 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   33 (35)
T 1srk_A            5 KRPFVCRICLSAFTTKANCARHLK-VHTDT   33 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHG-GGTSC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHH-HcCCC
Confidence            355779999999999999999964 57554

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.07  E-value=0.0012  Score=36.93  Aligned_cols=29  Identities=14%  Similarity=0.022  Sum_probs=23.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|- ++|..|
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~-~~H~~~   35 (36)
T 2elq_A            7 GKPFKCSLCEYATRSKSNLKAHM-NRHSTE   35 (36)
T ss_dssp             CCSEECSSSSCEESCHHHHHHHH-HHSSTT
T ss_pred             CCCccCCCCCchhCCHHHHHHHH-HHhccC
Confidence            35577999999999999999996 467654

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.05  E-value=0.001  Score=41.15  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=27.0

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+++|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k   40 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSER   40 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHhcCCCC
Confidence            3557799999999999999999998997664

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=96.03  E-value=0.0023  Score=35.77  Aligned_cols=27  Identities=19%  Similarity=0.114  Sum_probs=22.4

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHE   71 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHe   71 (177)
                      ++.+-|..||+.|.+...|..|.+ +|.
T Consensus         9 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~   35 (37)
T 1p7a_A            9 IKPFQCPDCDRSFSRSDHLALHRK-RHM   35 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHG-GGT
T ss_pred             CCCccCCCCCcccCcHHHHHHHHH-Hhc
Confidence            456779999999999999999954 454

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=96.03  E-value=0.002  Score=33.68  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=22.1

Q ss_pred             hhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           46 NCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        46 ~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      .+.|..||+.|.+...|..|-+ +|..|
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR-SHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH-HHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-HhcCC
Confidence            3569999999999999999965 46543

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.03  E-value=0.0012  Score=36.54  Aligned_cols=29  Identities=21%  Similarity=0.090  Sum_probs=23.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLR-KHTGE   35 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHH-HHTCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHH-HccCC
Confidence            345779999999999999999964 67654

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.97  E-value=0.0023  Score=37.78  Aligned_cols=30  Identities=17%  Similarity=0.230  Sum_probs=24.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|. ++|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k   39 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHW-ITHTREK   39 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHH-THHHHCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHH-HHcCCCC
Confidence            45577999999999999999995 4577653

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.95  E-value=0.0022  Score=37.83  Aligned_cols=30  Identities=20%  Similarity=0.183  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2yto_A           10 EKPYKCSDCGKAFTRKSGLHIHQQ-SHTGER   39 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-HHTCCC
T ss_pred             CCCEECcccCCccCCHhHHHHHHH-HcCCCC
Confidence            456789999999999999999964 576553

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.94  E-value=0.0018  Score=38.08  Aligned_cols=30  Identities=30%  Similarity=0.345  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|. .+|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k   39 (46)
T 2enf_A           10 EKPYKCNECGKVFTQNSHLVRHR-GIHTGEK   39 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHH-TTTTTSS
T ss_pred             CcCeECCCCCcccCCHHHHHHHH-HhhCCCC
Confidence            45678999999999999999995 5676653

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.93  E-value=0.0019  Score=38.24  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=24.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRR-IHTGEK   39 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHH-HHSSCC
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHH-HhCCCC
Confidence            355779999999999999999965 676553

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.92  E-value=0.0023  Score=37.74  Aligned_cols=30  Identities=30%  Similarity=0.355  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2en9_A           10 KKLFKCNECKKTFTQSSSLTVHQR-IHTGEK   39 (46)
T ss_dssp             SCCCBCTTTCCBCSSHHHHHHHHH-HHTSSC
T ss_pred             CCCEECCccCcccCCHHHHHHHHH-HcCCCC
Confidence            456789999999999999999964 676553

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.90  E-value=0.0015  Score=36.40  Aligned_cols=29  Identities=24%  Similarity=0.196  Sum_probs=23.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+-|..||..|.+...|..|.+ +|..|
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLR-IHTNE   35 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH-HHCCC
T ss_pred             CCCEECCCCCceeCCHHHHHHHHH-HhCCC
Confidence            355779999999999999999965 57544

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.88  E-value=0.0026  Score=37.17  Aligned_cols=30  Identities=23%  Similarity=0.305  Sum_probs=24.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|-+ +|..|+
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (44)
T 2eou_A           10 KTTSECQECGKIFRHSSLLIEHQA-LHAGES   39 (44)
T ss_dssp             SCCCCCTTTCCCCSSHHHHHHHHH-HHTTSC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHH-HHCCCC
Confidence            456779999999999999999964 576553

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.87  E-value=0.0025  Score=37.51  Aligned_cols=30  Identities=23%  Similarity=0.375  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2ep3_A           10 EKPYRCAECGKAFTDRSNLFTHQK-IHTGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHT-TTTTSC
T ss_pred             CCCeECCCCCchhCCHHHHHHHHH-HcCCCC
Confidence            456789999999999999999974 676553

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.87  E-value=0.0032  Score=37.14  Aligned_cols=30  Identities=20%  Similarity=0.268  Sum_probs=25.0

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2emz_A           10 ERPFKCNECGKGFGRRSHLAGHLR-LHSREK   39 (46)
T ss_dssp             CCSCCCSSSCCCCSSHHHHHHHHH-HHHHTT
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            456789999999999999999965 677654

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.87  E-value=0.0025  Score=37.36  Aligned_cols=30  Identities=30%  Similarity=0.386  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2ytr_A           10 EKPYKCNECGKAFSQTSKLARHQR-IHTGEK   39 (46)
T ss_dssp             CCTTCCTTTCCCCSSHHHHHHHHT-TTTTCS
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHH-hcCCCC
Confidence            456789999999999999999964 676553

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=94.86  E-value=0.0014  Score=34.68  Aligned_cols=27  Identities=30%  Similarity=0.523  Sum_probs=22.5

Q ss_pred             hhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           46 NCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        46 ~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      .+.|..||+.|.+...|..|-+ +|..|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~-~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR-QHTGE   28 (29)
Confidence            3569999999999999999964 67655

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=95.86  E-value=0.0027  Score=37.34  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ema_A           10 EKRYKCNECGKVFSRNSQLSQHQK-IHTGEK   39 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHT-GGGCCC
T ss_pred             CcCcCCCCCcchhCCHHHHHHHHH-hcCCCC
Confidence            456789999999999999999964 576553

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.86  E-value=0.0019  Score=37.97  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=24.3

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2emg_A           10 ENPFICSECGKVFTHKTNLIIHQK-IHTGE   38 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHT-TTSCC
T ss_pred             CCCEECCccCcccCCHHHHHHHHH-HhCCC
Confidence            356789999999999999999964 67655

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.86  E-value=0.002  Score=37.94  Aligned_cols=30  Identities=27%  Similarity=0.308  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|. .+|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k   39 (46)
T 2yti_A           10 EKPYKCNECGKVFTQNSHLARHR-GIHTGEK   39 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHH-TTTSCSC
T ss_pred             CcCeECCCCCcccCChhHHHHHh-HhcCCCC
Confidence            45678999999999999999995 5676553

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.85  E-value=0.0021  Score=37.81  Aligned_cols=30  Identities=30%  Similarity=0.330  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|. .+|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k   39 (46)
T 2ytn_A           10 KKPYKCNECGKVFTQNSHLARHR-GIHTGEK   39 (46)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHG-GGTSCCC
T ss_pred             CcCeECCCCCCeeCCHHHHHHHh-hhcCCCC
Confidence            45678999999999999999995 5676553

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.83  E-value=0.0025  Score=37.63  Aligned_cols=30  Identities=27%  Similarity=0.393  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|..|. ++|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k   39 (46)
T 2yth_A           10 EKPFQCEECGKRFTQNSHLHSHQ-RVHTGEK   39 (46)
T ss_dssp             SSSBCCSSSCCCBSSHHHHHHHG-GGGTTCC
T ss_pred             CcCCCCCCCCcccCCHHHHHHHH-HhcCCCC
Confidence            45678999999999999999996 4687653

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.83  E-value=0.0016  Score=38.38  Aligned_cols=29  Identities=28%  Similarity=0.346  Sum_probs=24.2

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2emi_A           10 ERHYECSECGKAFIQKSTLSMHQR-IHRGE   38 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHG-GGCSC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHh-HhCCC
Confidence            455789999999999999999954 67655

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=95.82  E-value=0.0037  Score=36.83  Aligned_cols=30  Identities=23%  Similarity=0.379  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2emk_A           10 EKPYECKECGKAFSQTTHLIQHQR-VHTGEK   39 (46)
T ss_dssp             SCSCBCSSSCCBCSCHHHHHHHHH-HHSSCC
T ss_pred             CCceECCCCCchhCCHHHHHHHHH-HcCCCC
Confidence            456889999999999999999975 576553

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.81  E-value=0.0019  Score=35.40  Aligned_cols=29  Identities=17%  Similarity=0.222  Sum_probs=23.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.....|..|-+ +|..|
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~   33 (35)
T 2elx_A            5 SSGYVCALCLKKFVSSIRLRSHIR-EVHGA   33 (35)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HTSCT
T ss_pred             CCCeECCCCcchhCCHHHHHHHHH-HHcCC
Confidence            345779999999999999999965 56554

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=95.80  E-value=0.0017  Score=34.07  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=21.8

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.|..||+.|.+...|..|-+ +|..|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~-~H~~~   28 (29)
T 1rik_A            3 FACPECPKRFMRSDHLTLHIL-LHENK   28 (29)
T ss_dssp             EECSSSSCEESCSHHHHHHHT-GGGSC
T ss_pred             ccCCCCCchhCCHHHHHHHHH-HhcCC
Confidence            569999999999999999975 57544

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.80  E-value=0.0025  Score=37.52  Aligned_cols=30  Identities=27%  Similarity=0.312  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|..|. ++|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k   39 (46)
T 2eq0_A           10 EKPYKCHECGKVFRRNSHLARHQ-LIHTGEK   39 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHH-TTTCCCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHH-HHcCCCC
Confidence            45678999999999999999995 4676553

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.79  E-value=0.0016  Score=36.28  Aligned_cols=29  Identities=14%  Similarity=0.007  Sum_probs=23.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+-|..||+.|.....|..|.+ +|..|
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHML-VHGDK   35 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHT-TTSTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH-HhcCC
Confidence            355779999999999999999964 56544

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.79  E-value=0.002  Score=36.12  Aligned_cols=29  Identities=24%  Similarity=0.189  Sum_probs=23.7

Q ss_pred             hhhhhhhhcCCCcCCh-hHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNN-DKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~-~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+. ..|..|.+ +|..|
T Consensus         7 ~k~~~C~~C~k~f~~~~~~L~~H~~-~H~~~   36 (37)
T 2elp_A            7 GRAMKCPYCDFYFMKNGSDLQRHIW-AHEGV   36 (37)
T ss_dssp             CCCEECSSSSCEECSSCHHHHHHHH-HHHTC
T ss_pred             CCCeECCCCChhhccCHHHHHHHHH-hcCCC
Confidence            3557799999999999 99999974 67654

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.79  E-value=0.0021  Score=37.79  Aligned_cols=30  Identities=17%  Similarity=0.127  Sum_probs=25.0

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|. .+|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~~   39 (46)
T 2en3_A           10 EKPFQCKECGMNFSWSCSLFKHL-RSHERTD   39 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHH-HHHHHSC
T ss_pred             CCCeeCcccChhhCCHHHHHHHH-HHhCCCC
Confidence            45678999999999999999997 5687653

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.78  E-value=0.0018  Score=38.11  Aligned_cols=30  Identities=20%  Similarity=0.270  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|. ++|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k   39 (46)
T 2em7_A           10 EKPYKCEECGKGFICRRDLYTHH-MVHTGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHG-GGGTTCC
T ss_pred             CcCccCCCccchhCCHHHHHHHH-HHhCCCC
Confidence            45678999999999999999995 4686653

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.78  E-value=0.0017  Score=45.66  Aligned_cols=30  Identities=20%  Similarity=0.294  Sum_probs=20.6

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      +.+-|..||..|.+...|.+|.+.+|..|.
T Consensus        55 k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           55 QVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            344477777777777777777777776653

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.78  E-value=0.0018  Score=36.25  Aligned_cols=29  Identities=10%  Similarity=0.124  Sum_probs=23.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~-~h~~~   35 (37)
T 2elo_A            7 GRSYSCPVCEKSFSEDRLIKSHIK-TNHPE   35 (37)
T ss_dssp             CCCCEETTTTEECSSHHHHHHHHH-HHCSS
T ss_pred             CCCcCCCCCCCccCCHHHHHHHHH-HHcCC
Confidence            355779999999999999999975 46554

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.78  E-value=0.0022  Score=37.87  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eoh_A           10 KKPYECKECRKTFIQIGHLNQHKR-VHTGER   39 (46)
T ss_dssp             SCSCCCSSSCCCCSSHHHHHHHHH-HCSSCC
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHH-HhCCCC
Confidence            456779999999999999999964 676553

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=95.77  E-value=0.0018  Score=37.00  Aligned_cols=30  Identities=13%  Similarity=0.218  Sum_probs=24.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|-+ +|..|+
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   33 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMN-VHRRDR   33 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHH-TTCCSC
T ss_pred             CCceECCCCCcccCCHHHHHHHHH-HcCCCc
Confidence            345779999999999999999954 676654

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.76  E-value=0.0022  Score=37.84  Aligned_cols=30  Identities=23%  Similarity=0.335  Sum_probs=24.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2enh_A           10 EKPYECDVCRKAFSHHASLTQHQR-VHSGEK   39 (46)
T ss_dssp             SSSCBCTTTCCBCSSSHHHHHHGG-GSCCSC
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHH-HhCCCC
Confidence            356789999999999999999965 676553

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=95.76  E-value=0.0034  Score=32.43  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=20.1

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHE   71 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHe   71 (177)
                      +-|..||+.|.+...|.+|.+ +|.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~-~h~   25 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR-VHK   25 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG-GTC
T ss_pred             ccCCCCCCcCCCHHHHHHHHH-HcC
Confidence            348999999999999999974 454

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.76  E-value=0.0018  Score=37.99  Aligned_cols=30  Identities=20%  Similarity=0.154  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (44)
T 2epv_A           10 EKPYECNECGKAFIWKSLLIVHER-THAGVS   39 (44)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHG-GGSSCS
T ss_pred             CcCeECCCCCcccCchHHHHHHHh-HhcCCC
Confidence            456789999999999999999965 676653

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.75  E-value=0.0021  Score=37.80  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eq1_A           10 EKPYKCNECGKAFRAHSNLTTHQV-IHTGEK   39 (46)
T ss_dssp             SCCCCCTTTTCCCSSHHHHHHHHT-TTCCSC
T ss_pred             CCCeECCcCChhhCCHHHHHHHHH-HhCCCC
Confidence            456889999999999999999965 676553

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.75  E-value=0.0016  Score=38.50  Aligned_cols=30  Identities=20%  Similarity=0.213  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2eoz_A           10 EKPYSCNVCGKAFVLSAHLNQHLR-VHTQET   39 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHH-HHSSCC
T ss_pred             CCCeECcccChhhCCHHHHHHHHH-HhCCCC
Confidence            456789999999999999999964 576553

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.75  E-value=0.0028  Score=37.24  Aligned_cols=30  Identities=23%  Similarity=0.313  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2yu8_A           10 EKPYKCNECGKVFTQNSHLARHRR-VHTGGK   39 (46)
T ss_dssp             CSSEECSSSCCEESSSHHHHHHTH-HHHSCC
T ss_pred             CCCeECCcCCchhCCHHHHHHHHH-hcCCCC
Confidence            456789999999999999999964 676553

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.75  E-value=0.0013  Score=38.66  Aligned_cols=30  Identities=27%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|. ++|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k   39 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQ-RIHTGEK   39 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHH-TTTSSCC
T ss_pred             CcCccCCCCCCccCChHHHHHHH-HHhCCCC
Confidence            35577999999999999999995 4687653

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.75  E-value=0.002  Score=37.11  Aligned_cols=30  Identities=23%  Similarity=0.256  Sum_probs=25.0

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   38 (42)
T 2en2_A            9 EKPYKCETCGARFVQVAHLRAHVL-IHTGSG   38 (42)
T ss_dssp             SCSEECTTTCCEESSHHHHHHHTH-HHHSCC
T ss_pred             CCCEeCCCcChhhCCHHHHHHHHH-HcCCCC
Confidence            456779999999999999999975 776553

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.75  E-value=0.0027  Score=36.39  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=24.1

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   36 (42)
T 2yte_A            8 EKPYSCAECKETFSDNNRLVQHQK-MHTVK   36 (42)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHH-HTSCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH-HhCCC
Confidence            355779999999999999999965 57654

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.74  E-value=0.0026  Score=37.42  Aligned_cols=30  Identities=17%  Similarity=0.173  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eoq_A           10 EKPFKCDICGKSFCGRSRLNRHSM-VHTAEK   39 (46)
T ss_dssp             SCSCCCSSSCCCCSSHHHHHHHHH-HTTCCC
T ss_pred             CCCcCCCcCCchhCCHHHHHHHHH-HcCCCC
Confidence            456789999999999999999954 686653

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.74  E-value=0.0022  Score=37.91  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|.+|. ++|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k   39 (46)
T 2em6_A           10 EKCYKCDVCGKEFSQSSHLQTHQ-RVHTGEK   39 (46)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHH-TTTSSSC
T ss_pred             CCCeECCCCCcccCCHHHHHHHH-HHcCCCC
Confidence            45578999999999999999995 5786653

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.74  E-value=0.0017  Score=36.94  Aligned_cols=29  Identities=14%  Similarity=0.001  Sum_probs=24.4

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      ++.+-|..||+.|.+...|..|-.++|..
T Consensus         7 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            7 GHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            45677999999999999999996667754

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.73  E-value=0.0035  Score=36.84  Aligned_cols=30  Identities=23%  Similarity=0.247  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2emp_A           10 VKPYMCNECGKAFSVYSSLTTHQV-IHTGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHH-HHHCCS
T ss_pred             CcCeECCCCCchhCCHHHHHHHHH-HcCCCC
Confidence            456789999999999999999965 576553

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.73  E-value=0.0025  Score=37.62  Aligned_cols=30  Identities=17%  Similarity=0.184  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2eoo_A           10 ERPYGCNECGKNFGRHSHLIEHLK-RHFREK   39 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-HHHSTT
T ss_pred             CCCEEccccCcccCCHHHHHHHHH-HHcCCC
Confidence            456789999999999999999964 587653

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.71  E-value=0.0026  Score=36.84  Aligned_cols=30  Identities=20%  Similarity=0.250  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|. .+|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~   39 (44)
T 2en7_A           10 MKPYVCNECGKAFRSKSYLIIHT-RTHTGES   39 (44)
T ss_dssp             SSSSCCTTTCCCCSSHHHHHHHH-TTTCCSS
T ss_pred             CcCeECCCCCCccCCHHHHHHHh-hhcCCCC
Confidence            45678999999999999999997 4676553

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.71  E-value=0.0024  Score=37.46  Aligned_cols=30  Identities=27%  Similarity=0.385  Sum_probs=24.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|.+|.+ +|..|+
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eor_A           10 EKPYNCEECGKAFIHDSQLQEHQR-IHTGEK   39 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHH-HHHSCC
T ss_pred             CcCccCCCCCCCcCCHHHHHHHHH-hcCCCC
Confidence            456779999999999999999964 676553

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.70  E-value=0.0033  Score=36.98  Aligned_cols=30  Identities=23%  Similarity=0.273  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2eml_A           10 EKPYECSVCGKAFSHRQSLSVHQR-IHSGKK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHG-GGSSCC
T ss_pred             CCCeeCCCcCCccCCHHHHHHHHH-HhcCCC
Confidence            456789999999999999999964 676553

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.66  E-value=0.003  Score=37.29  Aligned_cols=29  Identities=21%  Similarity=0.173  Sum_probs=24.4

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2elz_A           10 EKPYKCEDCGKGYNRRLNLDMHQR-VHMGE   38 (46)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHGG-GGGSC
T ss_pred             CCCeeCcccCchhCCHHHHHHHHH-hcCCC
Confidence            456789999999999999999965 67654

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.66  E-value=0.0029  Score=37.23  Aligned_cols=30  Identities=30%  Similarity=0.330  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2epz_A           10 EKPFDCIDCGKAFSDHIGLNQHRR-IHTGEK   39 (46)
T ss_dssp             CCSBCCTTTCCCBSSHHHHHHHHT-TTTTCC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHH-HhCCCC
Confidence            456789999999999999999975 676553

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=95.65  E-value=0.0032  Score=34.03  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=22.6

Q ss_pred             hhhhhh--hcCCCcCChhHHHHHHHhhhhhh
Q 037201           45 ENCLLI--RNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        45 r~~Lc~--~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.+.|.  .||..|.+...|..|.+ +|..|
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKK-SHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHG-GGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHH-HccCC
Confidence            446688  89999999999999964 57654

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=95.64  E-value=0.0031  Score=32.98  Aligned_cols=23  Identities=13%  Similarity=0.068  Sum_probs=20.1

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHH
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +.+.|..||+.|.+...|..|.+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHH
Confidence            45679999999999999999964

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.62  E-value=0.003  Score=37.00  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ep1_A           10 EKPYECSDCGKSFIKKSQLHVHQR-IHTGEN   39 (46)
T ss_dssp             CCSSCCSSSCCCCSSHHHHHHHHG-GGSSSC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHH-HhCCCC
Confidence            455789999999999999999975 576653

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.61  E-value=0.0034  Score=36.78  Aligned_cols=30  Identities=20%  Similarity=0.196  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|. ++|..|+
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k   39 (46)
T 2en8_A           10 EKSHTCDECGKNFCYISALRIHQ-RVHMGEK   39 (46)
T ss_dssp             CSSEECTTTCCEESSHHHHHHHH-TTTCCSC
T ss_pred             CCCeECCCcCcccCCHHHHHHHH-HHhCCCC
Confidence            45678999999999999999996 5676553

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=95.60  E-value=0.0036  Score=32.38  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=21.8

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.|..||..|.+...|..|-+ +|..|
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~-~h~~~   28 (29)
T 2m0e_A            3 HKCPHCDKKFNQVGNLKAHLK-IHIAD   28 (29)
T ss_dssp             CCCSSCCCCCCTTTHHHHHHH-HHHSC
T ss_pred             CcCCCCCcccCCHHHHHHHHH-HhccC
Confidence            559999999999999999964 57654

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.60  E-value=0.0024  Score=37.71  Aligned_cols=30  Identities=27%  Similarity=0.351  Sum_probs=24.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2em4_A           10 QRPYECIECGKAFKTKSSLICHRR-SHTGEK   39 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHH-HHSSSS
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHH-hcCCCC
Confidence            355779999999999999999964 676553

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=95.59  E-value=0.0026  Score=37.51  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2emj_A           10 EKPFECAECGKSFSISSQLATHQR-IHTGEK   39 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHH-HHTTSC
T ss_pred             CCCEECCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            455779999999999999999965 676553

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=95.57  E-value=0.0023  Score=37.74  Aligned_cols=30  Identities=17%  Similarity=0.207  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|. ++|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~   39 (46)
T 2el6_A           10 VNPYKCSQCEKSFSGKLRLLVHQ-RMHTREK   39 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHH-GGGCCSS
T ss_pred             CCCeECCCCCcccCCHHHHHHHH-HHcCCCC
Confidence            45577999999999999999995 5686653

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.57  E-value=0.0041  Score=36.38  Aligned_cols=30  Identities=13%  Similarity=0.141  Sum_probs=24.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|..|.+ +|..|+
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   37 (43)
T 2yrm_A            8 NGAFFCNECDCRFSEEASLKRHTL-QTHSDK   37 (43)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHHH-HHTCTT
T ss_pred             CCCEECCCCCCeeCChHHHHHHHH-hhCCCC
Confidence            455779999999999999999964 576553

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.56  E-value=0.003  Score=37.14  Aligned_cols=30  Identities=23%  Similarity=0.433  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2emh_A           10 ERPYICTVCGKAFTDRSNLIKHQK-IHTGEK   39 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHH-HHHCSS
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHH-hcCCCC
Confidence            456789999999999999999965 676553

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=95.56  E-value=0.0044  Score=32.13  Aligned_cols=26  Identities=31%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.|..||..|.+...|..|.+ +|..|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~-~H~~~   28 (29)
T 2m0f_A            3 LKCRECGKQFTTSGNLKRHLR-IHSGE   28 (29)
T ss_dssp             EECTTTSCEESCHHHHHHHHH-HHHTC
T ss_pred             ccCCCCCCccCChhHHHHHHH-HhcCC
Confidence            559999999999999999964 57654

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.56  E-value=0.0025  Score=37.75  Aligned_cols=30  Identities=23%  Similarity=0.321  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eon_A           10 EKPYKCQVCGKAFRVSSHLVQHHS-VHSGER   39 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHTT-TTTSCC
T ss_pred             CcccCCCCCCcccCcHHHHHHHHH-hcCCCC
Confidence            456789999999999999999964 676553

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.56  E-value=0.0031  Score=37.09  Aligned_cols=30  Identities=27%  Similarity=0.356  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eq2_A           10 GKPYQCNECGKAFSQTSKLARHQR-VHTGEK   39 (46)
T ss_dssp             SCSSSCCSSCCCCSSHHHHHHHGG-GGCCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH-HcCCCC
Confidence            456789999999999999999964 676553

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.53  E-value=0.0019  Score=37.11  Aligned_cols=29  Identities=21%  Similarity=0.203  Sum_probs=24.0

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+-|..||+.|.+...|..|. .+|..|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~   36 (41)
T 2ept_A            8 QRVYECQECGKSFRQKGSLTLHE-RIHTGS   36 (41)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHG-GGCCCC
T ss_pred             CCCeECCCCCCCcCCHHHHHHHH-HHhCCC
Confidence            35577999999999999999995 467655

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=95.53  E-value=0.0025  Score=37.40  Aligned_cols=30  Identities=20%  Similarity=0.248  Sum_probs=24.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|. ++|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~   39 (46)
T 2em9_A           10 EKPYNCKECGKSFRWASCLLKHQ-RVHSGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHG-GGGTSCC
T ss_pred             CcCeECCccccccCChHHHHHHH-HHhCCCC
Confidence            45678999999999999999996 4576553

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.51  E-value=0.0027  Score=37.18  Aligned_cols=30  Identities=20%  Similarity=0.199  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eow_A           10 EKPYKCNECGKAFRARSSLAIHQA-THSGEK   39 (46)
T ss_dssp             CCCEECTTSCCEESSHHHHHHHHH-HHCCCS
T ss_pred             CCCeeccccCChhcCHHHHHHHHH-HcCCCC
Confidence            456789999999999999999975 676553

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.50  E-value=0.0045  Score=36.58  Aligned_cols=30  Identities=20%  Similarity=0.348  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2ytm_A           10 EKPYKCMECGKAFGDNSSCTQHQR-LHTGQR   39 (46)
T ss_dssp             CCSSSBTTTTBCCSSHHHHHHHHH-HHHSCC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHH-HcCCCC
Confidence            456789999999999999999975 576553

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=95.50  E-value=0.0026  Score=36.49  Aligned_cols=29  Identities=17%  Similarity=0.091  Sum_probs=24.0

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||..|.+...|..|.+ +|..|
T Consensus         9 ~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~   37 (42)
T 2epc_A            9 ETPYLCGQCGKSFTQRGSLAVHQR-SCSQS   37 (42)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH-HTTCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHhh-hcCCC
Confidence            355779999999999999999964 67655

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.50  E-value=0.0023  Score=37.66  Aligned_cols=30  Identities=27%  Similarity=0.373  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2enc_A           10 EKPFKCEECGKGFYTNSQCYSHQR-SHSGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HSCCSS
T ss_pred             CCCcCCCCCCCcCCChHHHHHHHH-HhCCCC
Confidence            456789999999999999999964 676553

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=94.46  E-value=0.0024  Score=33.13  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.3

Q ss_pred             hhhhhhcCCCcCChhHHHHHHH
Q 037201           46 NCLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        46 ~~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      .+.|..||+.|.+...|..|-+
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            3569999999999999999954

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.47  E-value=0.0035  Score=36.68  Aligned_cols=29  Identities=24%  Similarity=0.264  Sum_probs=24.2

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eq4_A           10 EKLYNCKECGKSFSRAPCLLKHER-LHSGE   38 (46)
T ss_dssp             CCCCCBTTTTBCCSCHHHHHHHHH-HCCSS
T ss_pred             CCCeECCCCCCccCchHHHHHHHH-hcCCC
Confidence            355779999999999999999964 57655

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.47  E-value=0.0035  Score=40.60  Aligned_cols=31  Identities=16%  Similarity=0.023  Sum_probs=26.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+-|..||..|.+...|.+|.+..|..++
T Consensus        36 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~   66 (78)
T 2d9h_A           36 ALRFPCEFCGKRFEKPDSVAAHRSKSHPALL   66 (78)
T ss_dssp             TCCEECTTTCCEESSHHHHHHHHHHTSTTTS
T ss_pred             CcccCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            4567799999999999999999999998765

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=95.46  E-value=0.0037  Score=38.39  Aligned_cols=30  Identities=7%  Similarity=0.022  Sum_probs=25.0

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+-|..||..|.+...|..|.+ +|..|+
T Consensus        22 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   51 (54)
T 1yui_A           22 EQPATCPICYAVIRQSRNLRRHLE-LRHFAK   51 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHH-HHTTTS
T ss_pred             CCCccCCCCCcccCCHHHHHHHHH-HhccCC
Confidence            455679999999999999999975 677653

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.46  E-value=0.003  Score=37.26  Aligned_cols=30  Identities=23%  Similarity=0.316  Sum_probs=24.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ytq_A           10 EKPYGCSECGKAFSSKSYLIIHMR-THSGEK   39 (46)
T ss_dssp             CCSCBCSSSCCBCSCHHHHHHHHT-TTCCSC
T ss_pred             CCCcCCCccChhhCChHHHHHHHH-HhCCCC
Confidence            456789999999999999999964 576553

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.46  E-value=0.0022  Score=37.27  Aligned_cols=29  Identities=24%  Similarity=0.352  Sum_probs=24.1

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   38 (44)
T 2eoj_A           10 ENPYECCECGKVFSRKDQLVSHQK-THSGQ   38 (44)
T ss_dssp             CCSCEETTTTEECSSHHHHHHHHT-TSSSS
T ss_pred             CcCeeCCCCCCccCCHHHHHHHHH-HcCCC
Confidence            356789999999999999999964 57654

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.44  E-value=0.0041  Score=36.42  Aligned_cols=30  Identities=30%  Similarity=0.350  Sum_probs=24.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eop_A           10 EKPHECRECGKSFSFNSQLIVHQR-IHTGEN   39 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHT-TTTTSC
T ss_pred             CCCeeCCCCCchhCCHHHHHHHHH-HcCCCC
Confidence            456789999999999999999964 576553

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.44  E-value=0.0027  Score=37.22  Aligned_cols=30  Identities=27%  Similarity=0.390  Sum_probs=24.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2emm_A           10 ERPHKCNECGKSFIQSAHLIQHQR-IHTGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HHSCCC
T ss_pred             CCCeeCCCCChhhCCHHHHHHHHH-HhCCCC
Confidence            355779999999999999999964 576553

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=95.44  E-value=0.0024  Score=39.28  Aligned_cols=29  Identities=24%  Similarity=0.308  Sum_probs=24.6

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.+.|..||..|.+...|.+|.+.+|..+
T Consensus        29 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A           29 KPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            44669999999999999999998888754

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.43  E-value=0.0024  Score=37.59  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|. ++|..|+
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k   39 (46)
T 2ep0_A           10 EKPYKCDVCHKSFRYGSSLTVHQ-RIHTGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHH-TTTSSSC
T ss_pred             CCCeeCcccCcccCChHHHHHHH-HHhCCCC
Confidence            45677999999999999999995 4687653

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=95.42  E-value=0.0028  Score=36.49  Aligned_cols=29  Identities=24%  Similarity=0.368  Sum_probs=24.0

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|. ++|..|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~   36 (42)
T 2el5_A            8 ENPYECSECGKAFNRKDQLISHQ-RTHAGE   36 (42)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHH-GGGCCC
T ss_pred             CCCccCCCcChhhCCHHHHHHHH-HhcCCC
Confidence            35577999999999999999996 457655

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=95.42  E-value=0.0036  Score=41.36  Aligned_cols=29  Identities=10%  Similarity=0.187  Sum_probs=18.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||..|.+...|.+|-+ +|..|
T Consensus        30 ekp~~C~~C~k~F~~~~~L~~H~~-~Htge   58 (60)
T 4gzn_C           30 YRPRSCPECGKCFRDQSEVNRHLK-VHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHGG-GGSCC
T ss_pred             CcCeECCCCCCCcCCHHHHHHHhC-ccCCC
Confidence            344457777777777777777753 56554

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=95.42  E-value=0.0039  Score=36.78  Aligned_cols=30  Identities=20%  Similarity=0.336  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ely_A           10 EKPFKCVECGKGFSRRSALNVHHK-LHTGEK   39 (46)
T ss_dssp             CCSBCCSSSCCCBSSTTHHHHHHH-HHSCCS
T ss_pred             CCCcccCccCcccCCHHHHHHHHH-HcCCCC
Confidence            456789999999999999999975 576553

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.40  E-value=0.0031  Score=37.08  Aligned_cols=30  Identities=33%  Similarity=0.484  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2ytk_A           10 EKPYKCNECGKVFTQNSHLTNHWR-IHTGEK   39 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHH-HHSSSS
T ss_pred             CCCEeCCcCCCccCCHHHHHHHHH-HHCCCC
Confidence            456789999999999999999975 676553

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.39  E-value=0.0032  Score=36.71  Aligned_cols=30  Identities=17%  Similarity=0.140  Sum_probs=24.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   37 (44)
T 2emx_A            8 EKPFGCSCCEKAFSSKSYLLVHQQ-THAEEK   37 (44)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHH-HHTSSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            455779999999999999999965 576553

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.39  E-value=0.0024  Score=37.71  Aligned_cols=29  Identities=28%  Similarity=0.366  Sum_probs=24.3

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2ytp_A           10 ERHYECSECGKAFARKSTLIMHQR-IHTGE   38 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHT-TTSCC
T ss_pred             CCCeECCcCCcccCCHHHHHHHHH-HhCCC
Confidence            456789999999999999999965 67655

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.39  E-value=0.0031  Score=37.10  Aligned_cols=30  Identities=20%  Similarity=0.232  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|. ++|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~   39 (46)
T 2ytd_A           10 EKPYKCSECGKAFHRHTHLNEHR-RIHTGYR   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHH-HHHTCCC
T ss_pred             CcCeECCCCCCeeCChHHHHHHH-HHcCCCC
Confidence            35678999999999999999995 5686653

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.38  E-value=0.0025  Score=37.16  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=24.2

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+-|..||+.|.+...|..|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   38 (44)
T 2yu5_A           10 ENPFKCSKCDRVFTQRNYLVQHER-THARK   38 (44)
T ss_dssp             CCSEECSSSSCEESSSHHHHHHHH-HCCCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHhH-hcCCC
Confidence            456779999999999999999965 57655

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.36  E-value=0.0026  Score=37.55  Aligned_cols=30  Identities=23%  Similarity=0.271  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|. ++|..|+
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~~   39 (46)
T 2em5_A           10 TKSHQCHECGRGFTLKSHLNQHQ-RIHTGEK   39 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHH-TTTSCSC
T ss_pred             CCCeECCcCCCccCCHHHHHHHH-HHhCCCC
Confidence            45678999999999999999996 5686553

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.34  E-value=0.0029  Score=36.51  Aligned_cols=29  Identities=28%  Similarity=0.345  Sum_probs=24.0

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+-|..||+.|.+...|.+|.+ +|..|
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   37 (42)
T 2eos_A            9 EKPYPCEICGTRFRHLQTLKSHLR-IHTGS   37 (42)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHTT-TTSCC
T ss_pred             CCCEECCCCCCccCCHHHHHHHHH-hcCCC
Confidence            456779999999999999999965 67654

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.33  E-value=0.0028  Score=37.16  Aligned_cols=30  Identities=23%  Similarity=0.365  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|..|. .+|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~   39 (46)
T 2yts_A           10 EKPYICNECGKSFIQKSHLNRHR-RIHTGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHG-GGTSSCC
T ss_pred             CcCEECCCCChhhCChHHHHHHH-HhcCCCC
Confidence            45678999999999999999996 4676553

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.32  E-value=0.0037  Score=36.73  Aligned_cols=29  Identities=24%  Similarity=0.308  Sum_probs=24.2

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2emy_A           10 ENPYECHECGKAFSRKYQLISHQR-THAGE   38 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH-HHTTS
T ss_pred             CcCcCCCCCCcccCcHHHHHHHHH-HcCCC
Confidence            355789999999999999999965 57655

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.26  E-value=0.0032  Score=37.01  Aligned_cols=30  Identities=17%  Similarity=0.305  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ytj_A           10 EKPYICAECGKAFTIRSNLIKHQK-IHTKQK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HTSCCC
T ss_pred             CcCeECCCCChhhCCHHHHHHHHH-HcCCCC
Confidence            456789999999999999999974 676553

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.26  E-value=0.0028  Score=37.12  Aligned_cols=30  Identities=23%  Similarity=0.298  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|.+|. ++|..|+
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k   39 (46)
T 2yrj_A           10 EKPYRCGECGKAFAQKANLTQHQ-RIHTGEK   39 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHH-TTTSSCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHH-HHcCCCC
Confidence            45678999999999999999996 4676553

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.24  E-value=0.0029  Score=37.21  Aligned_cols=29  Identities=31%  Similarity=0.337  Sum_probs=24.3

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ene_A           10 EKPYKCNECGKVFRHNSYLSRHQR-IHTGE   38 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHT-TTCCC
T ss_pred             CCCeECCCCCchhCChHHHHHHHh-hcCCC
Confidence            456789999999999999999965 57655

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.23  E-value=0.0039  Score=36.74  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2em8_A           10 EKPYKCVECGKGYKRRLDLDFHQR-VHTGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HHHCCC
T ss_pred             CCCeECcccCchhCCHHHHHHHHH-HHcCCC
Confidence            456789999999999999999975 576553

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=95.23  E-value=0.0045  Score=36.36  Aligned_cols=30  Identities=20%  Similarity=0.195  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~   39 (46)
T 2em0_A           10 EKTWKCRECDMCFSQASSLRLHQN-VHVGEK   39 (46)
T ss_dssp             CCCCCCSSSCCCCSSHHHHHHHGG-GGSSSS
T ss_pred             CcCeECCCCCcccCCHHHHHHHHH-HcCCCC
Confidence            455789999999999999999965 576553

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.17  E-value=0.0036  Score=36.91  Aligned_cols=30  Identities=30%  Similarity=0.409  Sum_probs=24.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2em2_A           10 EKPFKCKECGKAFRQNIHLASHLR-IHTGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HHCCCC
T ss_pred             CCCEECCcCCchhCCHHHHHHHHH-HhCCCC
Confidence            355779999999999999999965 576553

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.16  E-value=0.0035  Score=36.83  Aligned_cols=30  Identities=23%  Similarity=0.262  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ep2_A           10 EKPYECSICGKSFTKKSQLHVHQQ-IHTGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-TTSSCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            456789999999999999999975 676553

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.16  E-value=0.0033  Score=37.10  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=24.3

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2emf_A           10 GKHFECTECGKAFTRKSTLSMHQK-IHTGE   38 (46)
T ss_dssp             SCCEECSSSCCEESCHHHHHHHGG-GTSCS
T ss_pred             CCCeECCCCCchhCCHHHHHHHHH-HhCCC
Confidence            455789999999999999999975 57655

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.14  E-value=0.0037  Score=35.83  Aligned_cols=29  Identities=21%  Similarity=0.343  Sum_probs=24.0

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||..|.+...|..|.+ +|..|
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   37 (42)
T 2ytb_A            9 EKPYRCDQCGKAFSQKGSLIVHIR-VHTGS   37 (42)
T ss_dssp             CCSBCCTTTTCCBSSHHHHHTTGG-GTSCC
T ss_pred             CCCeeCCCccchhCCHHHHHHHHH-HhCCC
Confidence            455779999999999999999964 57554

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.12  E-value=0.0034  Score=36.75  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=24.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ytf_A           10 EKPFECSECQKAFNTKSNLIVHQR-THTGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-TSCSSS
T ss_pred             CCCcCCCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            456789999999999999999964 676553

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.12  E-value=0.0039  Score=36.63  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=24.4

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||..|.+...|..|.+ +|..|
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2em3_A           10 EKPYECKVCSKAFTQKAHLAQHQK-THTGE   38 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HHCCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHH-HhCCC
Confidence            456789999999999999999975 57655

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=95.11  E-value=0.0044  Score=32.36  Aligned_cols=23  Identities=17%  Similarity=0.210  Sum_probs=20.0

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHH
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +.+-|..||+.|.+...|..|.+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            34669999999999999999964

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.11  E-value=0.0044  Score=36.40  Aligned_cols=29  Identities=17%  Similarity=0.278  Sum_probs=23.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2yso_A           10 EKSHQCRECGEIFFQYVSLIEHQV-LHMGQ   38 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH-HHSCC
T ss_pred             CCCEEccccChhhCCHHHHHHHHH-HhCCC
Confidence            355779999999999999999964 57554

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.11  E-value=0.0038  Score=36.33  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=24.2

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+-|..||+.|.+...|..|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   38 (44)
T 2emb_A           10 RKRYECSKCQATFNLRKHLIQHQK-THAAK   38 (44)
T ss_dssp             CSSEECTTTCCEESCHHHHHHHGG-GGCCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH-HcCCC
Confidence            355779999999999999999975 67655

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.11  E-value=0.0042  Score=36.37  Aligned_cols=30  Identities=27%  Similarity=0.320  Sum_probs=24.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|.+|. ++|..|+
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~-~~H~~~~   39 (46)
T 2eoe_A           10 EKPYKCNECGKVFTQNSHLANHQ-RIHTGVK   39 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHH-GGGSCCC
T ss_pred             CCCeECCCcChhhCCHHHHHHHH-HHcCCCC
Confidence            45678999999999999999996 4676553

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.10  E-value=0.0052  Score=35.51  Aligned_cols=29  Identities=28%  Similarity=0.331  Sum_probs=24.4

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||..|.+...|..|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   38 (44)
T 2eof_A           10 EKPYECNECQKAFNTKSNLMVHQR-THTGE   38 (44)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHH-HTTTS
T ss_pred             CCCeECCCCCcccCCHhHHHHHHH-HhCCC
Confidence            355779999999999999999975 57655

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.10  E-value=0.004  Score=36.43  Aligned_cols=30  Identities=27%  Similarity=0.304  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|..|. ++|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~   39 (46)
T 2eme_A           10 EKPYVCDYCGKAFGLSAELVRHQ-RIHTGEK   39 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHH-GGGCCCS
T ss_pred             CCCeECCCCChhhCCHHHHHHHH-HhcCCCC
Confidence            35578999999999999999997 4676553

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=95.05  E-value=0.0045  Score=40.87  Aligned_cols=30  Identities=17%  Similarity=0.152  Sum_probs=26.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      |+++.|..||+.|.+...|.+|-+ +|..|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~-~Ht~ek   31 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRR-AHLGYR   31 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH-HHHTCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHH-HhCCCc
Confidence            677889999999999999999974 798775

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=95.01  E-value=0.0045  Score=32.67  Aligned_cols=23  Identities=9%  Similarity=-0.049  Sum_probs=20.0

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHH
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +.+-|..||+.|.....|.+|-+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            44679999999999999999963

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.96  E-value=0.0041  Score=36.41  Aligned_cols=29  Identities=21%  Similarity=0.343  Sum_probs=24.3

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|.+|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2epw_A           10 EKPCKCTECGKAFCWKSQLIMHQR-THVDD   38 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHH-HCCSC
T ss_pred             CCCeeCCCCCCccCCHHHHHHHHH-HhCCC
Confidence            355789999999999999999975 57655

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.94  E-value=0.0039  Score=36.76  Aligned_cols=28  Identities=18%  Similarity=0.175  Sum_probs=23.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      ++.+.|..||+.|.+...|..|. .+|..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~   37 (46)
T 2eoy_A           10 EKCFKCNKCEKTFSCSKYLTQHE-RIHTR   37 (46)
T ss_dssp             SCCEECSSSCCEESSSHHHHHHH-TTCCS
T ss_pred             CCCEECcCCCCcCCCHHHHHHHH-HHcCC
Confidence            45678999999999999999996 56765

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.91  E-value=0.0039  Score=36.52  Aligned_cols=29  Identities=21%  Similarity=0.228  Sum_probs=24.2

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||..|.+...|.+|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eq3_A           10 EKPYECNQCGKAFSVRSSLTTHQA-IHTGK   38 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHT-TSCCC
T ss_pred             CCCeECCCCChhhCCHHHHHHHHH-HhCCC
Confidence            455779999999999999999964 67654

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=94.89  E-value=0.0042  Score=36.34  Aligned_cols=30  Identities=17%  Similarity=0.153  Sum_probs=24.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.+...|.+|. .+|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k   39 (46)
T 2el4_A           10 VKPYGCSQCAKTFSLKSQLIVHQ-RSHTGVK   39 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHG-GGSSSCC
T ss_pred             CCceECCCCCchhCCHHHHHHHH-HHhCCCC
Confidence            45578999999999999999996 4576553

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.89  E-value=0.0037  Score=36.75  Aligned_cols=29  Identities=17%  Similarity=0.233  Sum_probs=24.4

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||..|.+...|..|. ++|..|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2ytg_A           10 EKPFKCGECGKSYNQRVHLTQHQ-RVHTGE   38 (46)
T ss_dssp             CCSEECTTTCCEESSSHHHHTTG-GGGSSC
T ss_pred             CCCeECCCCCcccCCHHHHHHHH-HHcCCC
Confidence            45678999999999999999996 567655

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.79  E-value=0.005  Score=36.13  Aligned_cols=29  Identities=24%  Similarity=0.231  Sum_probs=24.2

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2en6_A           10 EKPYGCNECGKTFSQKSILSAHQR-THTGE   38 (46)
T ss_dssp             SCCEEETTTTEEESSHHHHHHHHH-HHSSC
T ss_pred             CcCeECCCCCcccCchHHHHHHHH-HcCCC
Confidence            355779999999999999999976 47654

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.79  E-value=0.0037  Score=36.72  Aligned_cols=29  Identities=17%  Similarity=0.213  Sum_probs=24.1

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ysp_A           10 EKPYKCEKCGKGYNSKFNLDMHQK-VHTGE   38 (46)
T ss_dssp             CCSEEETTTTEEESCHHHHHHHHT-TSCSC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH-hhCCC
Confidence            355779999999999999999965 57654

>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}

Probab=94.77  E-value=0.09  Score=41.68  Aligned_cols=82  Identities=24%  Similarity=0.303  Sum_probs=62.8

Q ss_pred             hHHHHHHHHhhcC------CCC---CCC--------chHHhhhhcEEEEEe--------------ecceEEEEeCC---C
Q 037201           88 MEKYKMAVSAILT------PKV---GYG--------FADELKRAWFCVRNV--------------RFGCLMVVSDD---S  133 (177)
Q Consensus        88 ~~KY~~Aar~vl~------pkv---gyg--------La~eLrRAGv~Vr~V--------------~v~clvLVSDd---s  133 (177)
                      .+..++++..+..      .++   |.|        ++..|.+.|+.+..+              .-|++|++|-.   .
T Consensus        41 ~~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~  120 (220)
T 3etn_A           41 TDAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTR  120 (220)
T ss_dssp             CTHHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCH
T ss_pred             HHHHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCCH
Confidence            4667778777765      333   666        455688899988876              34678888764   3


Q ss_pred             chHHHHHHHHH--cCccEEEEecCCchhhhhhhccccc
Q 037201          134 NFVEVFQEATL--RCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       134 df~~~lr~Ar~--r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      +..++++.|++  +|.++|.|-+..+..|.+.||..+.
T Consensus       121 ~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~  158 (220)
T 3etn_A          121 EIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLS  158 (220)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEE
T ss_pred             HHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEE
Confidence            55677788999  9999999999888899999998765

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.76  E-value=0.0068  Score=39.27  Aligned_cols=28  Identities=18%  Similarity=0.160  Sum_probs=20.5

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      +.+.|..||..|.+...|..|.++.|..
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~   41 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHILQKHTE   41 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CCeECCCcCchhCCHHHHHHHHHHhcCC
Confidence            4466777888888877887777777754

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.68  E-value=0.0036  Score=36.44  Aligned_cols=29  Identities=17%  Similarity=0.111  Sum_probs=24.1

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||..|.+...|.+|.+ +|..|
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~   38 (44)
T 2eox_A           10 SKSYNCNECGKAFTRIFHLTRHQK-IHTRK   38 (44)
T ss_dssp             CCCEEETTTTEEESSSHHHHTTHH-HHCCC
T ss_pred             CCCeECcccCcccCCHHHHHHHHH-HhCCC
Confidence            355779999999999999999975 57654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.65  E-value=0.0085  Score=39.61  Aligned_cols=29  Identities=24%  Similarity=0.391  Sum_probs=21.7

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ..+.|..||..|.+...|..|.+++|..+
T Consensus        64 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           64 KPYICQSCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CceECCCccchhCCHHHHHHHHHHhcCCC
Confidence            34558888888888888888888877643

>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}

Probab=94.60  E-value=0.06  Score=40.44  Aligned_cols=82  Identities=22%  Similarity=0.173  Sum_probs=59.8

Q ss_pred             hHHHHHHHHhhcCCCC----CCC--------chHHhhhhcEEEEEe---------------ecceEEEEeCCC---chHH
Q 037201           88 MEKYKMAVSAILTPKV----GYG--------FADELKRAWFCVRNV---------------RFGCLMVVSDDS---NFVE  137 (177)
Q Consensus        88 ~~KY~~Aar~vl~pkv----gyg--------La~eLrRAGv~Vr~V---------------~v~clvLVSDds---df~~  137 (177)
                      .+..++++..+...+.    |.|        ++..|.+.|..|..+               .-|+++++|-.-   +..+
T Consensus        26 ~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~  105 (187)
T 3sho_A           26 PEAIEAAVEAICRADHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRDTVA  105 (187)
T ss_dssp             HHHHHHHHHHHHHCSEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCCHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCCHHHHH
Confidence            4556666666655443    555        345677888888766               346777777643   4566


Q ss_pred             HHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          138 VFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       138 ~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      +++.|+++|.++|.|-|..+..|.+.||..+.
T Consensus       106 ~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~  137 (187)
T 3sho_A          106 ALAGAAERGVPTMALTDSSVSPPARIADHVLV  137 (187)
T ss_dssp             HHHHHHHTTCCEEEEESCTTSHHHHHCSEEEE
T ss_pred             HHHHHHHCCCCEEEEeCCCCCcchhhCcEEEE
Confidence            77888999999999999888899999998764

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.58  E-value=0.0054  Score=35.99  Aligned_cols=29  Identities=28%  Similarity=0.394  Sum_probs=24.3

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+-|..||..|.+...|.+|. .+|..|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2en1_A           10 EKPFKCEECGKRFTQNSQLHSHQ-RVHTGE   38 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHG-GGGSCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHH-HHcCCC
Confidence            45678999999999999999997 457655

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.53  E-value=0.0072  Score=35.40  Aligned_cols=30  Identities=23%  Similarity=0.303  Sum_probs=24.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||+.|.....|.+|.+ +|..|+
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~~   37 (45)
T 2epq_A            8 EKPYSCPVCGLRFKRKDRMSYHVR-SHDGSV   37 (45)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHH-HHSCCC
T ss_pred             CCCCcCCCCCcccCCHHHHHHHHH-HccCCC
Confidence            456779999999999999999975 576554

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=94.52  E-value=0.013  Score=35.39  Aligned_cols=24  Identities=13%  Similarity=-0.043  Sum_probs=12.7

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      +.|..||+.|.+...|.+|.+.-|
T Consensus        33 ~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C           33 YKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHHC
T ss_pred             cCCCCCcchhCCHHHHHHHHHHhc
Confidence            335555555555555555554433

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.49  E-value=0.0052  Score=36.74  Aligned_cols=29  Identities=21%  Similarity=0.125  Sum_probs=24.1

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~   38 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKL-SHSGE   38 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGG-GSCSC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHH-hcCCC
Confidence            456779999999999999999964 67654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.48  E-value=0.01  Score=40.54  Aligned_cols=29  Identities=10%  Similarity=0.148  Sum_probs=17.7

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.+.|..||+.|.+...|.+|.+.+|..|
T Consensus        68 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   96 (107)
T 1wjp_A           68 KKLTCLECMRTFKSSFSIWRHQVEVHNQN   96 (107)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHHHTSCCC
T ss_pred             CCccCccccchhCCHHHHHHHHHHHcCCC
Confidence            33456666666666666666666666543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=94.47  E-value=0.0085  Score=32.18  Aligned_cols=26  Identities=35%  Similarity=0.473  Sum_probs=21.2

Q ss_pred             hhhh--hcCCCcCChhHHHHHHHhhhhhh
Q 037201           47 CLLI--RNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        47 ~Lc~--~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.|.  .||..|.+...|..|.+ +|..|
T Consensus         3 ~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   30 (31)
T 1sp2_A            3 FMCTWSYCGKRFTRSDELQRHKR-THTGE   30 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHT-TTSCC
T ss_pred             cCCcCCCCCcccCCHhHHHHHHH-HhcCC
Confidence            5586  89999999999999974 56544

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=94.42  E-value=0.011  Score=36.91  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=19.7

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      +.+.|..||+.|.+...|.+|.+..|
T Consensus        39 ~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A           39 KVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCeECCCCCCccCCHHHHHHHHHHHc
Confidence            44568888888888888888877766

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=94.38  E-value=0.01  Score=33.57  Aligned_cols=29  Identities=24%  Similarity=0.326  Sum_probs=23.5

Q ss_pred             hhhhhhh--hcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLI--RNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~--~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|.  .||..|.+...|..|.+ +|..|
T Consensus         6 ~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~e   36 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTSHLRAHLR-WHTGE   36 (37)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHH-HHHTT
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            4557798  49999999999999965 57655

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.28  E-value=0.0082  Score=36.49  Aligned_cols=29  Identities=14%  Similarity=-0.035  Sum_probs=23.8

Q ss_pred             hhhhhhhh--cCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIR--NQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~--CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      |+++.|..  ||..|.+...|.+|. .+|..|
T Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~-r~Htg~   37 (38)
T 2eln_A            7 GILLKCPTDGCDYSTPDKYKLQAHL-KVHTAL   37 (38)
T ss_dssp             CCCEECSSSSCCCEESCHHHHHHHH-HHHSCC
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHH-HhcCCC
Confidence            56688986  999999999999996 467544

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=94.24  E-value=0.012  Score=35.59  Aligned_cols=25  Identities=20%  Similarity=-0.019  Sum_probs=20.9

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQI   69 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkql   69 (177)
                      +.+.|..||+.|.+...|..|.+.-
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h   27 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTH   27 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHH
T ss_pred             CCccCCCCcchhCChHHHHHHHHHc
Confidence            4577999999999999999998753

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.13  E-value=0.016  Score=39.43  Aligned_cols=32  Identities=16%  Similarity=-0.014  Sum_probs=26.6

Q ss_pred             hhhhhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           41 QRKKENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        41 ~r~er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      .+.|+.+.|..||+.|.....|.+|.+ +|..+
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r-~Htg~   39 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEA-QHGVT   39 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHH-HHTTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhh-hhCCC
Confidence            345677889999999999999999976 47765

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.07  E-value=0.013  Score=42.14  Aligned_cols=32  Identities=13%  Similarity=0.260  Sum_probs=27.3

Q ss_pred             hhhhhhhh--cCCCcCChhHHHHHHHhhhhhhhh
Q 037201           44 KENCLLIR--NQGRFYNNDKLVNHFRQIHEGEQK   75 (177)
Q Consensus        44 er~~Lc~~--CGrrf~t~~~L~kHFkqlHerEr~   75 (177)
                      |+++-|..  ||+.|.....|.+|.+.+|..|+-
T Consensus        25 EKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP   58 (73)
T 1x3c_A           25 YRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP   58 (73)
T ss_dssp             SCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC
T ss_pred             CCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCC
Confidence            45577975  999999999999999999987753

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=94.06  E-value=0.0016  Score=36.00  Aligned_cols=27  Identities=19%  Similarity=0.080  Sum_probs=22.5

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      +.|..||+.|.+...|.+|- .+|..|+
T Consensus         3 ~~C~~C~k~f~~~~~L~~H~-~~H~~~k   29 (32)
T 2kfq_A            3 FACPACPKRFMRSDALSKHI-KTAFIVV   29 (32)
T ss_dssp             SSSSSSCTTHHHHHTTSSST-TSSSSSS
T ss_pred             CCCCCCCcccCCHHHHHHHH-HHHccCC
Confidence            56999999999999999996 4676653

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=94.05  E-value=0.028  Score=29.02  Aligned_cols=25  Identities=12%  Similarity=0.066  Sum_probs=20.8

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      +-|..||+.|.+...|..|-+ +|..
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~-~h~~   27 (30)
T 1klr_A            3 YQCQYCEFRSADSSNLKTHIK-TKHS   27 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHH-HHTS
T ss_pred             ccCCCCCCccCCHHHHHHHHH-HHcc
Confidence            459999999999999999966 4543

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.03  E-value=0.011  Score=40.59  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=17.5

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.|..||+.|.+...|.+|.+..|..|
T Consensus        95 ~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           95 YKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             ccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            346667777777777777766666543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=93.90  E-value=0.016  Score=37.79  Aligned_cols=26  Identities=19%  Similarity=0.155  Sum_probs=15.9

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.|..||..|.+...|.+|.+ +|..|
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~-~H~~~   88 (90)
T 1a1h_A           63 FACDICGRKFARSDERKRHTK-IHLRQ   88 (90)
T ss_dssp             EECTTTCCEESSHHHHHHHHG-GGGC-
T ss_pred             ccCCCCCchhCCHHHHHHHHH-Hhccc
Confidence            446677777777777777754 45544

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.85  E-value=0.017  Score=35.98  Aligned_cols=28  Identities=14%  Similarity=0.334  Sum_probs=25.5

Q ss_pred             hhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           46 NCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        46 ~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      -|+|+.|-..|.+-+.|..||...|..+
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            3789999999999999999999999754

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.73  E-value=0.019  Score=32.13  Aligned_cols=30  Identities=30%  Similarity=0.273  Sum_probs=23.9

Q ss_pred             hhhhhhh--hcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLI--RNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~--~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|.  .||+.|.+...|.+|-+ +|..|+
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k   35 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKH-KHEMTL   35 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHH-HHHTTT
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            3456799  59999999999999974 676653

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.68  E-value=0.012  Score=38.04  Aligned_cols=29  Identities=14%  Similarity=0.056  Sum_probs=25.5

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.+-|..||+.|.+...|.+|.+..|..+
T Consensus        44 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A           44 AKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            45679999999999999999999988654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=93.60  E-value=0.022  Score=35.46  Aligned_cols=28  Identities=7%  Similarity=0.108  Sum_probs=24.6

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHE   71 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHe   71 (177)
                      ++.+-|..||+.|.+...|..|.+..|.
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~   35 (66)
T 2drp_A            8 EHTYRCKVCSRVYTHISNFCRHYVTSHK   35 (66)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             CcceECCCCcchhCCHHHHHHHHHHHcC
Confidence            4557799999999999999999988783

>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3

Probab=93.43  E-value=0.15  Score=38.11  Aligned_cols=80  Identities=19%  Similarity=0.196  Sum_probs=56.8

Q ss_pred             hHHHHHHHHhhcCCCC----CCC--------chHHhhhhcEEEEEe---------ecceEEEEeCCC---chHHHHHHHH
Q 037201           88 MEKYKMAVSAILTPKV----GYG--------FADELKRAWFCVRNV---------RFGCLMVVSDDS---NFVEVFQEAT  143 (177)
Q Consensus        88 ~~KY~~Aar~vl~pkv----gyg--------La~eLrRAGv~Vr~V---------~v~clvLVSDds---df~~~lr~Ar  143 (177)
                      .+..++++..+...+.    |.|        ++..|.+.|..+..+         .-|++|++|-.-   +..++++.|+
T Consensus        27 ~~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak  106 (180)
T 1jeo_A           27 KNKLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTESVLTVAKKAK  106 (180)
T ss_dssp             HHHHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCCCCcHHHHHHHHHHH
Confidence            3456666665554443    544        234567788877765         347788888654   4566678888


Q ss_pred             HcCccEEEEecCCchhhhhhhcccc
Q 037201          144 LRCLKMVVVGDMSDGALKRIANAFF  168 (177)
Q Consensus       144 ~r~l~TVVVGd~~~~~L~r~Ad~~~  168 (177)
                      ++|.++|.|-+..+. |.+.||..+
T Consensus       107 ~~g~~vi~IT~~~~s-l~~~ad~~l  130 (180)
T 1jeo_A          107 NINNNIIAIVCECGN-VVEFADLTI  130 (180)
T ss_dssp             TTCSCEEEEESSCCG-GGGGCSEEE
T ss_pred             HCCCcEEEEeCCCCh-HHHhCCEEE
Confidence            999999999998778 999999765

>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A

Probab=93.37  E-value=0.13  Score=38.66  Aligned_cols=81  Identities=16%  Similarity=0.150  Sum_probs=56.9

Q ss_pred             hHHHHHHHHhhcCCCC----CCC--------chHHhhhhcEEEEEe---------ecceEEEEeCCC---chHHHHHHHH
Q 037201           88 MEKYKMAVSAILTPKV----GYG--------FADELKRAWFCVRNV---------RFGCLMVVSDDS---NFVEVFQEAT  143 (177)
Q Consensus        88 ~~KY~~Aar~vl~pkv----gyg--------La~eLrRAGv~Vr~V---------~v~clvLVSDds---df~~~lr~Ar  143 (177)
                      .+..++++..+...+.    |.|        ++..|.+.|+.+..+         .-|++|++|-.-   +..++++.|+
T Consensus        24 ~~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak  103 (186)
T 1m3s_A           24 NEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTAAKAK  103 (186)
T ss_dssp             HHHHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence            3455666665554432    444        234567788877665         346778887654   3556778888


Q ss_pred             HcCccEEEEecCCchhhhhhhcccc
Q 037201          144 LRCLKMVVVGDMSDGALKRIANAFF  168 (177)
Q Consensus       144 ~r~l~TVVVGd~~~~~L~r~Ad~~~  168 (177)
                      ++|.++|.|-+..+..|.+.||..+
T Consensus       104 ~~g~~vi~IT~~~~s~l~~~ad~~l  128 (186)
T 1m3s_A          104 SLHGIVAALTINPESSIGKQADLII  128 (186)
T ss_dssp             HTTCEEEEEESCTTSHHHHHCSEEE
T ss_pred             HCCCEEEEEECCCCCchHHhCCEEE
Confidence            9999999999987789999999765

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=93.35  E-value=0.017  Score=37.08  Aligned_cols=18  Identities=17%  Similarity=0.087  Sum_probs=9.3

Q ss_pred             hhhcCCCcCChhHHHHHH
Q 037201           49 LIRNQGRFYNNDKLVNHF   66 (177)
Q Consensus        49 c~~CGrrf~t~~~L~kHF   66 (177)
                      |..||+.|.+...|.+|.
T Consensus        48 C~~C~k~f~~~~~L~~H~   65 (74)
T 2lce_A           48 CNICGAQFNRPANLKTHT   65 (74)
T ss_dssp             CTTTCCEESCHHHHHHHH
T ss_pred             CCCCCchhCCHHHHHHHH
Confidence            555555555555555553

>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}

Probab=93.34  E-value=0.13  Score=38.50  Aligned_cols=80  Identities=13%  Similarity=0.215  Sum_probs=57.9

Q ss_pred             HHHHHHHhhcCCC--C---CCC--------chHHhhhhcEEEEEe--------------ecceEEEEeCCC---chHHHH
Q 037201           90 KYKMAVSAILTPK--V---GYG--------FADELKRAWFCVRNV--------------RFGCLMVVSDDS---NFVEVF  139 (177)
Q Consensus        90 KY~~Aar~vl~pk--v---gyg--------La~eLrRAGv~Vr~V--------------~v~clvLVSDds---df~~~l  139 (177)
                      ..++++..+...+  +   |.|        ++..|.+.|..+..+              .-|++|++|-.-   +..+++
T Consensus        37 ~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~  116 (183)
T 2xhz_A           37 NFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALI  116 (183)
T ss_dssp             HHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCCCCCHHHHHHH
Confidence            5666666666543  2   444        344566778877666              347788888654   455667


Q ss_pred             HHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          140 QEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       140 r~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      +.|+++|.++|.|-+..+..|.+.||..+.
T Consensus       117 ~~ak~~g~~vi~IT~~~~s~la~~ad~~l~  146 (183)
T 2xhz_A          117 PVLKRLHVPLICITGRPESSMARAADVHLC  146 (183)
T ss_dssp             HHHHTTTCCEEEEESCTTSHHHHHSSEEEE
T ss_pred             HHHHHCCCCEEEEECCCCChhHHhCCEEEE
Confidence            788899999999999888899999998764

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.32  E-value=0.015  Score=36.88  Aligned_cols=23  Identities=9%  Similarity=-0.064  Sum_probs=14.0

Q ss_pred             hhhhhhcCCCcCChhHHHHHHHh
Q 037201           46 NCLLIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        46 ~~Lc~~CGrrf~t~~~L~kHFkq   68 (177)
                      .+-|..||..|.+...|.+|.+.
T Consensus        37 ~~~C~~C~~~f~~~~~L~~H~~~   59 (70)
T 1x5w_A           37 PFKCNYCSFDTKQPSNLSKHMKK   59 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CEeCCCCCCccCCHHHHHHHHHH
Confidence            34466666666666666666543

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=93.25  E-value=0.019  Score=34.81  Aligned_cols=24  Identities=17%  Similarity=0.117  Sum_probs=21.5

Q ss_pred             hhhhhhhhhcCCCcCChhHHHHHH
Q 037201           43 KKENCLLIRNQGRFYNNDKLVNHF   66 (177)
Q Consensus        43 ~er~~Lc~~CGrrf~t~~~L~kHF   66 (177)
                      .|+.+.|..||+.|.....|.+|-
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            456788999999999999999995

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.16  E-value=0.039  Score=37.71  Aligned_cols=27  Identities=15%  Similarity=0.106  Sum_probs=18.2

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      ++.+-|.+||+.|.+...|.+|.+.-|
T Consensus        52 ~~~~~C~~C~k~F~~~~~L~~H~~~h~   78 (98)
T 2gqj_A           52 QDALKCQHCRKQFKSKAGLNYHTMAEH   78 (98)
T ss_dssp             HHHHSCSSSCCCCSCHHHHHHHHHHHS
T ss_pred             CCCEECCCCCCccCCHHHHHHHHHHHc
Confidence            345567777777777777777765444

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.15  E-value=0.026  Score=39.42  Aligned_cols=28  Identities=14%  Similarity=-0.046  Sum_probs=19.3

Q ss_pred             hhhhhhhhcCCCc-CChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRF-YNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf-~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||..| .+...|..|-+ +| .|
T Consensus        32 ~~~~~C~~C~k~F~~~~~~L~~H~~-~h-~~   60 (96)
T 2ctd_A           32 KGSVSCPTCQAVGRKTIEGLKKHME-NC-KQ   60 (96)
T ss_dssp             TSCEECTTTCSCEESSHHHHHHHHH-HH-CC
T ss_pred             CCCcCCCCCCCCcccCHHHHHHHHH-HH-CC
Confidence            4445688888888 78888888854 46 54

>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3

Probab=93.12  E-value=0.13  Score=39.80  Aligned_cols=82  Identities=23%  Similarity=0.279  Sum_probs=58.0

Q ss_pred             hHHHHHHHHhhcCCCC----CCC--------chHHhhhhcEEEEEe---------ecceEEEEeCC---CchHHHHHHHH
Q 037201           88 MEKYKMAVSAILTPKV----GYG--------FADELKRAWFCVRNV---------RFGCLMVVSDD---SNFVEVFQEAT  143 (177)
Q Consensus        88 ~~KY~~Aar~vl~pkv----gyg--------La~eLrRAGv~Vr~V---------~v~clvLVSDd---sdf~~~lr~Ar  143 (177)
                      .+..++++..+...+.    |.|        ++..|.+.|..+..+         .-|++|++|-.   .+..++++.|+
T Consensus        34 ~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak  113 (200)
T 1vim_A           34 LETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAK  113 (200)
T ss_dssp             HHHHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHH
Confidence            3445555555544332    444        234567778777765         34778888864   45667788888


Q ss_pred             HcCccEEEEecCCchhhhhhhccccc
Q 037201          144 LRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       144 ~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      ++|.++|.|-+..+..|.+.||..+.
T Consensus       114 ~~g~~vI~IT~~~~s~La~~ad~~l~  139 (200)
T 1vim_A          114 DIGSKLVAVTGKRDSSLAKMADVVMV  139 (200)
T ss_dssp             HHTCEEEEEESCTTSHHHHHCSEEEE
T ss_pred             HCCCeEEEEECCCCChHHHhCCEEEE
Confidence            99999999999888899999998764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=93.02  E-value=0.03  Score=34.24  Aligned_cols=27  Identities=22%  Similarity=0.370  Sum_probs=22.5

Q ss_pred             hhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           46 NCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        46 ~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      .+.|..||+.|.+...|..|.+. |..+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~   28 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS-HTNE   28 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT-TTSS
T ss_pred             cCcCCCCccccCCHHHHHHHHHH-hCCC
Confidence            35699999999999999999764 7554

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=92.94  E-value=0.033  Score=43.06  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=28.3

Q ss_pred             hhhhhhhhhcCCCcCChhHHHHHHHhhhhhhhhhhh
Q 037201           43 KKENCLLIRNQGRFYNNDKLVNHFRQIHEGEQKKRS   78 (177)
Q Consensus        43 ~er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr~Krl   78 (177)
                      -++.+.|..||+.|.+...|..|++.-.-+.+.|.|
T Consensus        47 GekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l   82 (124)
T 1zr9_A           47 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQL   82 (124)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHh
Confidence            457788999999999999999999876544444443

>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3

Probab=92.87  E-value=0.09  Score=39.39  Aligned_cols=46  Identities=13%  Similarity=0.230  Sum_probs=38.4

Q ss_pred             cceEEEEeC---CCchHHHHHHHHHcCccEEEEecCCchhhhhhhcccc
Q 037201          123 FGCLMVVSD---DSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFF  168 (177)
Q Consensus       123 v~clvLVSD---dsdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~  168 (177)
                      -|+++++|-   ..+..++++.|+++|.++|.|-+..+..|.+.||..+
T Consensus       111 ~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l  159 (188)
T 1tk9_A          111 KDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNL  159 (188)
T ss_dssp             TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEE
Confidence            367888886   3556778888999999999999987789999999876

>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A

Probab=92.70  E-value=0.15  Score=38.39  Aligned_cols=45  Identities=18%  Similarity=0.341  Sum_probs=37.8

Q ss_pred             ceEEEEeCCC---chHHHHHHHHHcCccEEEEecCCchhhhhhhcccc
Q 037201          124 GCLMVVSDDS---NFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFF  168 (177)
Q Consensus       124 ~clvLVSDds---df~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~  168 (177)
                      |+++++|-.-   +..++++.|+++|.++|.|-+..+..|.+.||..+
T Consensus       118 d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l  165 (198)
T 2xbl_A          118 DVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLL  165 (198)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEE
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEE
Confidence            6688888643   56777888899999999999988889999999876

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=92.63  E-value=0.025  Score=36.22  Aligned_cols=30  Identities=27%  Similarity=0.347  Sum_probs=24.6

Q ss_pred             hhhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           43 KKENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        43 ~er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      .++.+.|..||+.|.+...|..|.+ +|..+
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~   43 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKT-VHTGE   43 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHH-HHCCC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHH-HcCCC
Confidence            3566789999999999999999975 56544

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.61  E-value=0.042  Score=37.70  Aligned_cols=30  Identities=10%  Similarity=0.012  Sum_probs=25.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|.+|.+..|.-+
T Consensus        78 ~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           78 QKVLKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             CcceECCCCCCccCCHHHHHHHHHHhCCcc
Confidence            466789999999999999999998777543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=92.48  E-value=0.026  Score=33.76  Aligned_cols=29  Identities=10%  Similarity=0.163  Sum_probs=23.7

Q ss_pred             hhhhhhh--hcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLI--RNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~--~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|.  .||+.|.....|..|.+ +|..|
T Consensus        16 ~k~~~C~~~~C~k~F~~~~~L~~H~~-~H~~e   46 (47)
T 1ncs_A           16 DKTFECLFPGCTKTFKRRYNIRSHIQ-THLED   46 (47)
T ss_dssp             TTEEECCCTTCCCEECSSSSHHHHHH-HHTTT
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHH-HccCC
Confidence            4567795  79999999999999965 57655

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=92.40  E-value=0.039  Score=37.17  Aligned_cols=26  Identities=15%  Similarity=0.097  Sum_probs=16.0

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.|..||+.|.+...|.+|. ++|..|
T Consensus        74 ~~C~~C~~~f~~~~~L~~H~-~~H~~~   99 (106)
T 2ee8_A           74 FKCQECGKGFCQSRTLAVHK-TLHMQT   99 (106)
T ss_dssp             TSCSSSCCCCSSHHHHHHHH-HHTTSC
T ss_pred             eECCCcCCcccCHHHHHHHH-HHhCCC
Confidence            44666777777777777764 355443

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.26  E-value=0.023  Score=36.69  Aligned_cols=19  Identities=16%  Similarity=0.183  Sum_probs=10.1

Q ss_pred             hhhhcCCCcCChhHHHHHH
Q 037201           48 LLIRNQGRFYNNDKLVNHF   66 (177)
Q Consensus        48 Lc~~CGrrf~t~~~L~kHF   66 (177)
                      -|..||..|.+...|.+|.
T Consensus        48 ~C~~C~~~f~~~~~L~~H~   66 (77)
T 2cot_A           48 KCDECGKAFIQRSHLIGHH   66 (77)
T ss_dssp             ECSSSCCEESSHHHHHHHG
T ss_pred             eCCCCCCccCCHHHHHHHH
Confidence            3555555555555555554

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.16  E-value=0.044  Score=34.68  Aligned_cols=25  Identities=12%  Similarity=-0.170  Sum_probs=22.0

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkq   68 (177)
                      ++.+.|..||+.|.+...|.+|.+.
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~~   31 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHERI   31 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            4567799999999999999999865

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.09  E-value=0.039  Score=35.27  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=13.1

Q ss_pred             hhhhhcCCCcCChhHHHHHHH
Q 037201           47 CLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +-|..||+.|.+...|.+|.+
T Consensus        43 ~~C~~C~~~f~~~~~L~~H~~   63 (72)
T 1x6e_A           43 YKCLECGKAFSQNSGLINHQR   63 (72)
T ss_dssp             EECSSSCCEESSHHHHHHHHH
T ss_pred             eECCCCCcccCCHHHHHHHHH
Confidence            446666666666666666654

>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A

Probab=91.88  E-value=0.17  Score=39.51  Aligned_cols=46  Identities=15%  Similarity=0.278  Sum_probs=38.1

Q ss_pred             ceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          124 GCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       124 ~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      |++|++|-.   .+..++++.|+++|.++|.|-+..+..|.+.||.-+.
T Consensus       133 DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~  181 (212)
T 2i2w_A          133 DVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIR  181 (212)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEE
Confidence            678888754   4566778888999999999999888899999998664

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.87  E-value=0.087  Score=35.96  Aligned_cols=28  Identities=7%  Similarity=-0.083  Sum_probs=23.4

Q ss_pred             hhhhhhhhcCCCcC-ChhHHHHHHHhhhhh
Q 037201           44 KENCLLIRNQGRFY-NNDKLVNHFRQIHEG   72 (177)
Q Consensus        44 er~~Lc~~CGrrf~-t~~~L~kHFkqlHer   72 (177)
                      ++.+.|..||+.|. +...|..|.+. |..
T Consensus        22 ~~~~~C~~C~k~f~~~~~~L~~H~~~-h~~   50 (98)
T 2gqj_A           22 RGEAVCPTCNVVTRKTLVGLKKHMEV-CQK   50 (98)
T ss_dssp             TSCCCCTTTCCCCSSCSHHHHHHHHH-HHH
T ss_pred             CCCcCCCCCCCChhhhHHHHHHHHHH-HcC
Confidence            45677999999999 99999999865 544

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.79  E-value=0.046  Score=35.21  Aligned_cols=29  Identities=17%  Similarity=0.265  Sum_probs=22.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      ++.+.|..||+.|.+...|..|.+..|..
T Consensus        13 ~k~~~C~~C~~~f~~~~~l~~H~~~~~~~   41 (86)
T 1x6h_A           13 EKPYACSHCDKTFRQKQLLDMHFKRYHDP   41 (86)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            34566888999999888888888877754

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.70  E-value=0.04  Score=35.18  Aligned_cols=29  Identities=28%  Similarity=0.394  Sum_probs=23.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||+.|.+...|..|.+ +|..|
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~   40 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQR-VHTGE   40 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-GGGCS
T ss_pred             CCCccCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            456779999999999999999976 46543

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.69  E-value=0.029  Score=40.53  Aligned_cols=26  Identities=8%  Similarity=-0.147  Sum_probs=13.8

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      +.+.|..||+.|.+...|..|.+.+|
T Consensus        17 kpy~C~~Cgk~F~~~~~L~~H~r~~H   42 (102)
T 2ghf_A           17 GGYECKYCTFQTPDLNMFTFHVDSEH   42 (102)
T ss_dssp             SSEECSSCSCEESCHHHHHHHHHHHC
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhhC
Confidence            44445555555555555555555455

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=91.56  E-value=0.044  Score=36.17  Aligned_cols=27  Identities=15%  Similarity=0.000  Sum_probs=21.9

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHE   71 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHe   71 (177)
                      +.+-|..||..|.+...|..|-+.-|.
T Consensus        30 ~~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C           30 KPFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHhCC
Confidence            445688899999999999999877774

>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}

Probab=91.43  E-value=0.39  Score=36.65  Aligned_cols=82  Identities=15%  Similarity=0.214  Sum_probs=62.0

Q ss_pred             hHHHHHHHHhhcCCC--C---CCCc--------hHHhhhhcEEEEEe--------------ecceEEEEeCCC---chHH
Q 037201           88 MEKYKMAVSAILTPK--V---GYGF--------ADELKRAWFCVRNV--------------RFGCLMVVSDDS---NFVE  137 (177)
Q Consensus        88 ~~KY~~Aar~vl~pk--v---gygL--------a~eLrRAGv~Vr~V--------------~v~clvLVSDds---df~~  137 (177)
                      .+..++++..+...+  +   |.|-        +..|.+.|..+..+              .-|+++++|-.-   +..+
T Consensus        31 ~~~i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~  110 (201)
T 3fxa_A           31 EEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLN  110 (201)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSSSCCHHHHT
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCCCCCHHHHH
Confidence            466777777777664  2   6663        33577889888877              347788888654   4456


Q ss_pred             HHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          138 VFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       138 ~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      +++.|+++|.++|.|-+..+..|.+.||..+.
T Consensus       111 ~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~  142 (201)
T 3fxa_A          111 LIPACKTKGSTLIGVTENPDSVIAKEADIFFP  142 (201)
T ss_dssp             THHHHHHHTCEEEEEESCTTSHHHHHCSEEEE
T ss_pred             HHHHHHHcCCeEEEEECCCCChhHHhCCEEEE
Confidence            67888999999999999888899999998774

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.17  E-value=0.083  Score=34.85  Aligned_cols=26  Identities=42%  Similarity=0.530  Sum_probs=19.6

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.|..||..|.+...|..|.+ +|..|
T Consensus        63 ~~C~~C~k~f~~~~~L~~H~~-~H~~~   88 (95)
T 2ej4_A           63 EECPREGKSFKAKYKLVNHIR-VHTGE   88 (95)
T ss_dssp             TTCSSTTCCCSSHHHHHHHHH-HHHTC
T ss_pred             cCCCCCCcccCCHHHHHHHHH-hcCCC
Confidence            568888888888888888865 56554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=91.12  E-value=0.079  Score=31.81  Aligned_cols=25  Identities=20%  Similarity=0.187  Sum_probs=18.5

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      +.|..||..|.+...|..|.+. |..
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~-h~~   26 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRT-HTD   26 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHh-cCC
Confidence            3478888888888888888754 544

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=90.98  E-value=0.053  Score=34.33  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=18.3

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHH
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +.+-|..||+.|.+...|..|.+
T Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           48 KPFQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            34558889999999999988854

>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A

Probab=90.87  E-value=0.29  Score=37.22  Aligned_cols=46  Identities=17%  Similarity=0.313  Sum_probs=38.1

Q ss_pred             ceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhh---hccccc
Q 037201          124 GCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRI---ANAFFS  169 (177)
Q Consensus       124 ~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~---Ad~~~s  169 (177)
                      |+++.+|-.   .+..++++.|+++|.+||.|-+..+..|.+.   ||..+.
T Consensus       115 DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~  166 (199)
T 1x92_A          115 DVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIR  166 (199)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEE
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEE
Confidence            667888754   4566788888999999999999888999999   998663

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=90.87  E-value=0.05  Score=40.23  Aligned_cols=28  Identities=25%  Similarity=0.272  Sum_probs=17.7

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.+.|..||..|.+...|..|.+ +|..|
T Consensus        21 k~y~C~~C~k~F~~~~~L~~H~~-~H~~~   48 (133)
T 2lt7_A           21 VYYICIVCKRSYVCLTSLRRHFN-IHSWE   48 (133)
T ss_dssp             EEEEETTTCCEESCHHHHHHHHH-HHHCC
T ss_pred             cCeECCCCCCCcCCHHHHHHHHH-HcCCC
Confidence            34557777777777777777754 56544

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.68  E-value=0.038  Score=32.27  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             hhhhhhh--hcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLI--RNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~--~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|.  .||..|.+...|..|.+ +|..|
T Consensus        10 ~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   40 (48)
T 2ent_A           10 EKPFACTWPGCGWRFSRSDELSRHRR-SHSGV   40 (48)
T ss_dssp             CCCEECCSSSCCCEESSHHHHHHHHT-TSCCC
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHH-HhCCC
Confidence            3557797  89999999999999964 57654

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=90.67  E-value=0.046  Score=35.23  Aligned_cols=30  Identities=23%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             hhhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           43 KKENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        43 ~er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      .++.+.|..||..|.+...|..|.+ +|..+
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~   44 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRR-THTGE   44 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHT-TTCCS
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHH-HcCCC
Confidence            3567889999999999999999975 46543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=90.46  E-value=0.065  Score=34.19  Aligned_cols=28  Identities=14%  Similarity=0.220  Sum_probs=20.4

Q ss_pred             hhhhhhh--cCCCcCChhHHHHHHHhhhhhh
Q 037201           45 ENCLLIR--NQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        45 r~~Lc~~--CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.+.|..  ||..|.+...|..|.+ +|..|
T Consensus        37 ~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   66 (79)
T 2dlk_A           37 KSFSCPEPACGKSFNFKKHLKEHMK-LHSDT   66 (79)
T ss_dssp             CCEECSCTTTCCEESSHHHHHHHHH-HHHTS
T ss_pred             CCeECCCCCCcCccCCHHHHHHHHH-HhCCC
Confidence            3455877  8888888888888875 56544

>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}

Probab=90.37  E-value=0.31  Score=38.23  Aligned_cols=46  Identities=22%  Similarity=0.293  Sum_probs=38.8

Q ss_pred             cceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhh---cccc
Q 037201          123 FGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIA---NAFF  168 (177)
Q Consensus       123 v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~A---d~~~  168 (177)
                      -|+++.+|-.   .+..++++.|+++|.++|.|-+..++.|.+.|   |..+
T Consensus       115 ~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l  166 (201)
T 3trj_A          115 DDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIEL  166 (201)
T ss_dssp             TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEE
Confidence            4778888864   45677888999999999999998788999999   9765

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=90.28  E-value=0.061  Score=39.78  Aligned_cols=28  Identities=14%  Similarity=0.268  Sum_probs=18.6

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      +.+.|..||..|.+...|..|.+..|..
T Consensus        77 k~~~C~~C~k~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           77 RRYQCLACGKSFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             CCEEESSSCCEESSHHHHHHHHHHHTCC
T ss_pred             ccccCCCCCCCcCCHHHHHHHhHHhcCC
Confidence            3445777777777777777777766643

>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}

Probab=90.14  E-value=0.37  Score=36.44  Aligned_cols=46  Identities=17%  Similarity=0.329  Sum_probs=37.6

Q ss_pred             ceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhh---hccccc
Q 037201          124 GCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRI---ANAFFS  169 (177)
Q Consensus       124 ~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~---Ad~~~s  169 (177)
                      |++|.+|-.   .+..++++.|+++|.+||.|-+..+..|.+.   ||..+.
T Consensus       111 DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~  162 (196)
T 2yva_A          111 DVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIR  162 (196)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEE
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEE
Confidence            677888764   4566788888999999999999887899999   887653

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=90.13  E-value=0.1  Score=36.33  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=26.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQKK   76 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr~K   76 (177)
                      ++.+-|..||..|.+...|..|.+ +|..|+.-
T Consensus        23 ~kpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~   54 (88)
T 1x6f_A           23 NSTYQCKHCDSKLQSTAELTSHLN-IHNEEFQK   54 (88)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHH-HHHHHHHH
T ss_pred             CCCCcCCCCCCEeCCHHHHHHHHH-HhCCCCCc
Confidence            456779999999999999999975 78877643

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=90.10  E-value=0.052  Score=39.19  Aligned_cols=31  Identities=19%  Similarity=0.200  Sum_probs=26.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.+.|..||..|.+...|..|-..+|..|+
T Consensus        48 ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgek   78 (102)
T 2ghf_A           48 NSSYVCVECNFLTKRYDALSEHNLKYHPGEE   78 (102)
T ss_dssp             SCCEEETTTTEEESSTHHHHTHHHHTSTTCC
T ss_pred             CCCcCCCCCCcccCCHHHHHHHHHHhcCCCC
Confidence            4567799999999999999999777898775

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=90.07  E-value=0.065  Score=32.21  Aligned_cols=28  Identities=11%  Similarity=0.080  Sum_probs=22.4

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.+-|..||..|.+...|..|.+ +|..|
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~   55 (57)
T 1bbo_A           28 RPYHCTYCNFSFKTKGNLTKHMK-SKAHS   55 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH-SSSSC
T ss_pred             CCccCCCCCchhcCHHHHHHHHH-Hhccc
Confidence            44669999999999999999965 45433

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=90.06  E-value=0.13  Score=34.94  Aligned_cols=26  Identities=15%  Similarity=0.086  Sum_probs=16.0

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      +-|..||+.|.+...|.+|.+.-|..
T Consensus        66 ~~C~~C~~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           66 YECNICAKRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHHHHH
T ss_pred             eeCCCCcchhcCHHHHHHHHHHcccc
Confidence            34666666666666666666555443

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=89.98  E-value=0.11  Score=34.24  Aligned_cols=25  Identities=20%  Similarity=0.191  Sum_probs=20.7

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      +.+.|..||+.|.+...|.+|.+ +|
T Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~-~H   98 (100)
T 2ebt_A           74 KPFQCGVCNRSFSRSDHLALHMK-RH   98 (100)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHH-HH
T ss_pred             CCeECCCCcCccCCHHHHHHHHH-Hh
Confidence            44569999999999999999965 44

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.87  E-value=0.11  Score=34.14  Aligned_cols=28  Identities=21%  Similarity=0.166  Sum_probs=24.3

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      +-|..||+.|.+...|..|.+..|..++
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~   53 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGP   53 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCT
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCC
Confidence            3499999999999999999888787664

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=89.80  E-value=0.13  Score=36.04  Aligned_cols=27  Identities=19%  Similarity=0.086  Sum_probs=17.4

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      +++.|..||+.|.+...|..|.+. |++
T Consensus        73 ~~~~C~~C~k~f~~~~~l~~H~~~-H~~   99 (129)
T 2wbt_A           73 SQFVCPLCLMPFSSSVSLKQHIRY-TEH   99 (129)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHH-TCC
T ss_pred             CCeECCCCCcccCCHhHHHHHHHH-CCC
Confidence            445577777777777777777643 543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=89.64  E-value=0.087  Score=33.56  Aligned_cols=30  Identities=17%  Similarity=0.009  Sum_probs=24.5

Q ss_pred             hhhhhhh--cCCCcCChhHHHHHHHhhhhhhh
Q 037201           45 ENCLLIR--NQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        45 r~~Lc~~--CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      +.+.|..  ||+.|.+...|..|.+..|..++
T Consensus         6 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~   37 (79)
T 2dlk_A            6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK   37 (79)
T ss_dssp             SSEECSSTTTCCEESSHHHHHHHHHHGGGSCC
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHHHhCCCC
Confidence            3455665  99999999999999998887653

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=89.54  E-value=0.1  Score=26.70  Aligned_cols=21  Identities=19%  Similarity=0.199  Sum_probs=18.4

Q ss_pred             hhhh--hcCCCcCChhHHHHHHH
Q 037201           47 CLLI--RNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        47 ~Lc~--~CGrrf~t~~~L~kHFk   67 (177)
                      +.|.  .||+.|.+...|..|.+
T Consensus         3 ~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            3 YVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             EEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCcCCcCcCccCCHHHHHHHHH
Confidence            4588  99999999999999964

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=89.38  E-value=0.18  Score=35.04  Aligned_cols=29  Identities=10%  Similarity=0.007  Sum_probs=25.3

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      ++.+.|..||+.|.+...|.+|...+|..
T Consensus        60 ~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           60 QEMFTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             CCCCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             CCCeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            56677999999999999999997788864

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.25  E-value=0.11  Score=33.28  Aligned_cols=28  Identities=14%  Similarity=-0.105  Sum_probs=23.2

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      ++.+-|..||+.|.+...|.+|.+ +|..
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~-~h~~   32 (78)
T 2d9h_A            5 SSGLQCEICGFTCRQKASLNWHQR-KHAE   32 (78)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-HHHH
T ss_pred             CcCeECCCCCCeeCCHHHHHHHHH-Hhhc
Confidence            456779999999999999999975 4554

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=89.09  E-value=0.12  Score=32.77  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=18.9

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkq   68 (177)
                      +.+.|..||..|.+...|.+|.+.
T Consensus        56 ~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           56 KPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             CCEECTTTSCEESSHHHHHHHHHH
T ss_pred             CCCcCCCcchhhCChHHHHHHHHh
Confidence            345588899999999999888653

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=89.02  E-value=0.12  Score=36.17  Aligned_cols=29  Identities=17%  Similarity=0.137  Sum_probs=23.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|.+||..|.+...|.+|-+ +|..|
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~-~H~~~   54 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLR-LLHAA   54 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHH-TTSCS
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhh-hccCC
Confidence            355779999999999999999976 46544

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=88.70  E-value=0.16  Score=33.39  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=12.0

Q ss_pred             hhhhcCCCcCChhHHHHHHHhhh
Q 037201           48 LLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        48 Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      .|..||..|.+...|.+|.+..|
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHH
Confidence            35555555555555555555544

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=88.60  E-value=0.099  Score=34.39  Aligned_cols=21  Identities=14%  Similarity=0.044  Sum_probs=12.9

Q ss_pred             hhhhhcCCCcCChhHHHHHHH
Q 037201           47 CLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +.|..||..|.+...|.+|.+
T Consensus        37 ~~C~~C~~~f~~~~~l~~H~~   57 (96)
T 2dmd_A           37 YKCKTCDYAAADSSSLNKHLR   57 (96)
T ss_dssp             EECSSSCCEESSHHHHHHHHH
T ss_pred             EeCCCCCCccCCHHHHHHHHH
Confidence            346666666666666666654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=88.41  E-value=0.21  Score=33.87  Aligned_cols=19  Identities=16%  Similarity=0.120  Sum_probs=10.0

Q ss_pred             hhhhcCCCcCChhHHHHHH
Q 037201           48 LLIRNQGRFYNNDKLVNHF   66 (177)
Q Consensus        48 Lc~~CGrrf~t~~~L~kHF   66 (177)
                      .|..||..|.+...|..|.
T Consensus        44 ~C~~C~~~f~~~~~l~~H~   62 (107)
T 1wjp_A           44 VCPYCSLRFFSPELKQEHE   62 (107)
T ss_dssp             CCTTTCCCBSSHHHHHHHH
T ss_pred             cCCCCCCccCCHHHHHHHH
Confidence            3555555555555555554

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=88.19  E-value=0.12  Score=33.46  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHer   72 (177)
                      +.+.|..||..|.+...|..|.+ .|..
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~   59 (90)
T 1a1h_A           33 KPFQCRICMRNFSRSDHLTTHIR-THTG   59 (90)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH-HHHC
T ss_pred             CCccCCCCCcccCCHHHHHHHHH-HcCC
Confidence            34569999999999999999976 4543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=87.57  E-value=0.15  Score=34.61  Aligned_cols=21  Identities=29%  Similarity=0.308  Sum_probs=12.7

Q ss_pred             hhhhhcCCCcCChhHHHHHHH
Q 037201           47 CLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +.|..||+.|.+...|..|.+
T Consensus        67 ~~C~~C~~~f~~~~~l~~H~~   87 (119)
T 2jp9_A           67 FQCKTCQRKFSRSDHLKTHTR   87 (119)
T ss_dssp             EECTTTCCEESCHHHHHHHHH
T ss_pred             ccCCccCchhCCHHHHHHHHH
Confidence            346666666666666666654

>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1

Probab=87.50  E-value=1  Score=37.99  Aligned_cols=61  Identities=8%  Similarity=0.040  Sum_probs=46.7

Q ss_pred             HHhhh-hcEEEEEe-------------ec-ceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          109 DELKR-AWFCVRNV-------------RF-GCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       109 ~eLrR-AGv~Vr~V-------------~v-~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      .-|.+ .|+.|..+             .- |++|.+|-.   .+-.++++.|+++|.++|.|-+..++.|.+.||.-+.
T Consensus        72 ~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~vIaIT~~~~S~La~~ad~~l~  150 (342)
T 1j5x_A           72 YYFERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLV  150 (342)
T ss_dssp             HHHHHHHCCEEEEEEHHHHHTTCSCCCCSSEEEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESCTTSHHHHHSSEEEE
T ss_pred             HHHHHhhCCeEEEECchHHHhcCcccCCCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHhcCEEEE
Confidence            34555 67766655             22 778888854   4667778888999999999999888899999997653

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.33  E-value=0.14  Score=32.85  Aligned_cols=26  Identities=8%  Similarity=0.123  Sum_probs=22.0

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      +.+.|..||..|.+...|..|.+.-|
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~~h~   71 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHADNCA   71 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             cceECCCCCChhCCHHHHHHHHHHcc
Confidence            45779999999999999999986533

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=86.85  E-value=0.14  Score=32.41  Aligned_cols=29  Identities=21%  Similarity=0.379  Sum_probs=21.5

Q ss_pred             hhhhhhhh--cCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIR--NQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~--CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..  ||+.|.+...|..|.+ +|..|
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   45 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTR-THTGE   45 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHH-HHSSS
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHH-hcCCC
Confidence            45567877  8888888888888874 56544

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=86.79  E-value=0.21  Score=31.57  Aligned_cols=21  Identities=14%  Similarity=0.002  Sum_probs=15.9

Q ss_pred             hhhhcCCCcCChhHHHHHHHh
Q 037201           48 LLIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        48 Lc~~CGrrf~t~~~L~kHFkq   68 (177)
                      .|..||..|.+...|..|.+.
T Consensus         3 ~C~~C~~~f~~~~~l~~H~~~   23 (82)
T 2kmk_A            3 DCKICGKSFKRSSTLSTHLLI   23 (82)
T ss_dssp             ECSSSCCEESSHHHHHHHHHH
T ss_pred             cCCCCcccccCchhHHHHHHH
Confidence            477788888888888888764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.70  E-value=0.32  Score=32.72  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=19.7

Q ss_pred             hhhhhcCCCcCChhHHHHHHH
Q 037201           47 CLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +.|+.||..|+-.+.|++|.|
T Consensus        13 ~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           13 KICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHH
T ss_pred             eeCCcccccccchHHHHhhhh
Confidence            569999999999999999988

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=86.69  E-value=0.15  Score=37.87  Aligned_cols=21  Identities=24%  Similarity=0.192  Sum_probs=11.9

Q ss_pred             hhhhhcCCCcCChhHHHHHHH
Q 037201           47 CLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +.|..||..|.+...|..|.+
T Consensus       134 ~~C~~C~~~f~~~~~L~~H~~  154 (190)
T 2i13_A          134 YKCPECGKSFSREDNLHTHQR  154 (190)
T ss_dssp             EECTTTCCEESCHHHHHHHHH
T ss_pred             eECCCCCcccCCHHHHHHHHH
Confidence            345556666666556655544

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=86.42  E-value=0.14  Score=33.70  Aligned_cols=28  Identities=21%  Similarity=0.171  Sum_probs=22.5

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.+-|..||..|.+...|.+|.+ .|..|
T Consensus        63 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~   90 (96)
T 2dmd_A           63 RPFKCQICPYASRNSSQLTVHLR-SHTGD   90 (96)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHT-TCCSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHH-HhcCC
Confidence            44569999999999999999976 45443

>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}

Probab=86.33  E-value=0.41  Score=37.94  Aligned_cols=48  Identities=19%  Similarity=0.236  Sum_probs=38.0

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCch-----------hhhhhhccccc
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDG-----------ALKRIANAFFS  169 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~-----------~L~r~Ad~~~s  169 (177)
                      .-|++|++|-.   .+..++++.|+++|.++|.|-+..+.           .|.+.||+.+.
T Consensus       108 ~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~  169 (243)
T 3cvj_A          108 NKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLD  169 (243)
T ss_dssp             TTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEE
Confidence            34778888854   46677888889999999999887433           89999998773

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=86.13  E-value=0.18  Score=32.53  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=17.6

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHH
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +.+-|..||+.|.+...|.+|.+
T Consensus        64 ~~~~C~~C~~~f~~~~~l~~H~~   86 (89)
T 2wbs_A           64 RPFQCQKCDRAFSRSDHLALHMK   86 (89)
T ss_dssp             CCEECSSSSCEESSHHHHHHHGG
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            33458888888888888888854

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=86.11  E-value=0.24  Score=34.57  Aligned_cols=27  Identities=15%  Similarity=0.217  Sum_probs=23.7

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      ++.+.|..||+.|.+...|.+|.+.-|
T Consensus        98 ~~~~~C~~C~k~f~~~~~l~~H~~~h~  124 (129)
T 2wbt_A           98 EHTKVCPVCKKEFTSTDSALDHVCKKH  124 (129)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHHC
Confidence            667779999999999999999987655

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=85.95  E-value=0.21  Score=35.57  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=15.2

Q ss_pred             hhhhhcCCCcCChhHHHHHHHh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkq   68 (177)
                      +-|..||..|.+...|.+|.+.
T Consensus         4 ~~C~~C~~~f~~~~~L~~H~~~   25 (155)
T 2gli_A            4 CRWDGCSQEFDSQEQLVHHINS   25 (155)
T ss_dssp             CCBTTCCCBCSCHHHHHHHHHH
T ss_pred             CCcCCCccccCCHHHHHHHHHh
Confidence            4466677777777777777765

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=85.77  E-value=0.24  Score=35.39  Aligned_cols=30  Identities=20%  Similarity=0.134  Sum_probs=26.1

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ..+-|..||+.|.+...|..|.+..|..+.
T Consensus        24 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   53 (155)
T 2rpc_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGP   53 (155)
T ss_dssp             CSSSCCCCCCCBSSHHHHHHHHHTTTSCCT
T ss_pred             cccccccCCcccCCHHHHHHHHHhhcCCCc
Confidence            456699999999999999999999897654

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.45  E-value=0.24  Score=33.78  Aligned_cols=25  Identities=8%  Similarity=0.022  Sum_probs=22.2

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkq   68 (177)
                      ++.+.|..||+.|.+...|..|.+.
T Consensus        17 ~~~~~C~~C~k~f~~~~~L~~H~~~   41 (115)
T 2dmi_A           17 ASKFRCKDCSAAYDTLVELTVHMNE   41 (115)
T ss_dssp             CCSEEBSSSSCEESSHHHHHHHHHH
T ss_pred             CCCEECCccCchhcCHHHHHHHHHH
Confidence            4567899999999999999999885

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=85.25  E-value=0.2  Score=31.53  Aligned_cols=29  Identities=31%  Similarity=0.476  Sum_probs=23.1

Q ss_pred             hhhhhhh--hcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLI--RNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~--~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|.  .||+.|.+...|..|.+ +|..+
T Consensus        17 ~~~~~C~~~~C~k~f~~~~~l~~H~~-~h~~~   47 (73)
T 1f2i_G           17 MRPYACPVESCDRRFSRSDELTRHIR-IHTGQ   47 (73)
T ss_dssp             CCCEECSSTTBCCEESSHHHHHHHHH-HHHCC
T ss_pred             CCccCCcCCCCCCccCCHHHHHHHHH-hhCCC
Confidence            3557797  59999999999999964 67654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=84.97  E-value=0.25  Score=32.31  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=20.7

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkq   68 (177)
                      +.+.|..||+.|.+...|..|.+.
T Consensus        34 ~~~~C~~C~~~f~~~~~l~~H~~~   57 (95)
T 2yt9_A           34 KPYSCPVCGLRFKRKDRMSYHVRS   57 (95)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHH
Confidence            446699999999999999999864

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=84.60  E-value=0.22  Score=33.76  Aligned_cols=28  Identities=25%  Similarity=0.261  Sum_probs=19.9

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +.+.|..||..|.+...|..|.+ +|..+
T Consensus        36 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~   63 (110)
T 2csh_A           36 RPYGCGVCGKKFKMKHHLVGHMK-IHTGI   63 (110)
T ss_dssp             CSEECTTTSCEESSSHHHHHHHT-TTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHH-HcCCC
Confidence            44558888888888888888864 45443

>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*

Probab=84.51  E-value=1  Score=38.52  Aligned_cols=48  Identities=10%  Similarity=0.059  Sum_probs=39.1

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      .-|.+|.+|-.   .+-.++++.|+++|.+||.|-+..++.|.+.||.-+.
T Consensus       107 ~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~  157 (375)
T 2zj3_A          107 RDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVH  157 (375)
T ss_dssp             TTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHHhCCEeee
Confidence            34577888864   4566778889999999999999888899999998764

>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}

Probab=84.34  E-value=2  Score=34.10  Aligned_cols=59  Identities=25%  Similarity=0.391  Sum_probs=42.6

Q ss_pred             HhhhhcEEEEEe------------------ecceEEEEe-CCCc-hHHHHHHHHHcCccEEEEecCCchhhhhhhcccc
Q 037201          110 ELKRAWFCVRNV------------------RFGCLMVVS-DDSN-FVEVFQEATLRCLKMVVVGDMSDGALKRIANAFF  168 (177)
Q Consensus       110 eLrRAGv~Vr~V------------------~v~clvLVS-Ddsd-f~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~  168 (177)
                      |....||-|+||                  ..|.+|+|. ||.. ..+++++|+++|+...||=+.-|..-..-|.-.|
T Consensus        47 efekqgvdvrtvedkedfrenireiwerypqldvvvivttddkewikdfieeakergvevfvvynnkdddrrkeaqqef  125 (162)
T 2l82_A           47 EFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEF  125 (162)
T ss_dssp             HHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHh
Confidence            455679999999                  677776665 4544 4689999999999999988776555555554433

>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3

Probab=84.07  E-value=1  Score=37.65  Aligned_cols=49  Identities=10%  Similarity=0.077  Sum_probs=40.9

Q ss_pred             ecceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccch
Q 037201          122 RFGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSW  170 (177)
Q Consensus       122 ~v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~sW  170 (177)
                      .-|++|.+|-.   .+-.++++.|+++|.+||.|-+..+..|.+.||+.+.-
T Consensus       140 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~  191 (306)
T 1nri_A          140 KNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIET  191 (306)
T ss_dssp             TTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEEC
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEc
Confidence            45778888854   45678889999999999999998888999999987754

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=83.42  E-value=0.41  Score=32.46  Aligned_cols=24  Identities=8%  Similarity=0.192  Sum_probs=17.2

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkq   68 (177)
                      +.+.|..||..|.+...|..|.+.
T Consensus        34 ~~~~C~~C~~~f~~~~~l~~H~~~   57 (124)
T 2dlq_A           34 KPFECPKCGKCYFRKENLLEHEAR   57 (124)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCeECCCCCchhcCHHHHHHHHhh
Confidence            345577777777777777777665

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.13  E-value=0.24  Score=31.17  Aligned_cols=27  Identities=7%  Similarity=-0.068  Sum_probs=22.2

Q ss_pred             hhhhhhh-hcCCCcCChhHHHHHHHhhhh
Q 037201           44 KENCLLI-RNQGRFYNNDKLVNHFRQIHE   71 (177)
Q Consensus        44 er~~Lc~-~CGrrf~t~~~L~kHFkqlHe   71 (177)
                      ++.+.|. .||..|.....|.+|-+ +|-
T Consensus        34 ~~p~~C~~~C~k~f~~~~~L~~H~~-~hc   61 (66)
T 2eod_A           34 RLPVACPNQCGVGTVAREDLPGHLK-DSC   61 (66)
T ss_dssp             SSEEECTTCCSCCEEETTTHHHHHH-TTS
T ss_pred             CcCccCCcccCcccccHHHHHHHHH-hhc
Confidence            4567799 99999999999999964 454

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=82.46  E-value=0.26  Score=33.86  Aligned_cols=21  Identities=19%  Similarity=0.150  Sum_probs=12.6

Q ss_pred             hhhhhcCCCcCChhHHHHHHH
Q 037201           47 CLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +.|..||..|.+...|..|.+
T Consensus        35 ~~C~~C~~~f~~~~~l~~H~~   55 (124)
T 1ubd_C           35 HVCAECGKAFVESSKLKRHQL   55 (124)
T ss_dssp             EECTTTCCEESSHHHHHHHGG
T ss_pred             eECCCCCchhCCHHHHHHHHH
Confidence            446666666666666666644

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.41  E-value=0.029  Score=35.00  Aligned_cols=29  Identities=7%  Similarity=0.028  Sum_probs=23.2

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.+.|..||..|.+...|..|.+ +|..|
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~   65 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEG-NESGK   65 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSS-CCCCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHH-hhcCC
Confidence            566779999999999999999954 46544

>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}

Probab=82.34  E-value=1.4  Score=37.28  Aligned_cols=83  Identities=13%  Similarity=0.119  Sum_probs=56.7

Q ss_pred             chHHHHHHHHhhcC--CC-C---CCCch--------HHhhh-hcEEEEEe--------------ecceEEEEeCC---Cc
Q 037201           87 KMEKYKMAVSAILT--PK-V---GYGFA--------DELKR-AWFCVRNV--------------RFGCLMVVSDD---SN  134 (177)
Q Consensus        87 K~~KY~~Aar~vl~--pk-v---gygLa--------~eLrR-AGv~Vr~V--------------~v~clvLVSDd---sd  134 (177)
                      ..+..++++..+..  ++ +   |.|-.        .-|.+ .|+.|...              .-|.+|.+|-.   .+
T Consensus        38 ~~~~i~~~~~~i~~~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~t~e  117 (355)
T 2a3n_A           38 ARQKAEQVADEIYQAGFSSLFFASVGGSLAPMMAINEFAKELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDTKE  117 (355)
T ss_dssp             THHHHHHHHHHHHHHCCSCEEEEECGGGHHHHHHHHHHHHHHCCSCEEEEEHHHHHHHCCTTCCTTCEEEEECSSSCCHH
T ss_pred             hHHHHHHHHHHHHhCCCCEEEEEEccHHHHHHHHHHHHHHhhcCCeEEEcCcHHHHhhchhcCCCCCEEEEEeCCCCCHH
Confidence            34555666665554  33 2   55522        23556 67776654              23567777754   45


Q ss_pred             hHHHHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          135 FVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       135 f~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      -.++++.|+++|.+||.|-+..++.|.+.||.-+.
T Consensus       118 ~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~  152 (355)
T 2a3n_A          118 SVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIP  152 (355)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEE
T ss_pred             HHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEE
Confidence            66778888999999999999888899999997653

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=82.24  E-value=0.5  Score=31.57  Aligned_cols=23  Identities=17%  Similarity=0.128  Sum_probs=13.9

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHH
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +.+.|..||..|.+...|..|.+
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~   38 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHER   38 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHH
Confidence            34456666666666666666654

>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=81.93  E-value=1.4  Score=37.63  Aligned_cols=47  Identities=6%  Similarity=0.189  Sum_probs=38.2

Q ss_pred             cceEEEEeCC---CchHHHHHHHHHc-CccEEEEecCCchhhhhhhccccc
Q 037201          123 FGCLMVVSDD---SNFVEVFQEATLR-CLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       123 v~clvLVSDd---sdf~~~lr~Ar~r-~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      -|.+|.+|=.   .+-.++++.|+++ |.++|.|-+..++.|.+.||.-+.
T Consensus        98 ~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~ad~~l~  148 (373)
T 2aml_A           98 LDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLD  148 (373)
T ss_dssp             CCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCCCChHHHhcCccee
Confidence            3667777754   4566778888899 999999999888899999998663

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=81.81  E-value=0.24  Score=35.47  Aligned_cols=19  Identities=21%  Similarity=0.051  Sum_probs=9.7

Q ss_pred             hhh--cCCCcCChhHHHHHHH
Q 037201           49 LIR--NQGRFYNNDKLVNHFR   67 (177)
Q Consensus        49 c~~--CGrrf~t~~~L~kHFk   67 (177)
                      |..  ||..|.+...|.+|.+
T Consensus        93 C~~~~C~~~f~~~~~L~~H~~  113 (155)
T 2rpc_A           93 CPFPGCGKIFARSENLKIHKR  113 (155)
T ss_dssp             CSCTTTCCEESCHHHHHHHHT
T ss_pred             CCcCCCCCccCCHHHHHHHHH
Confidence            544  5555555555555543

>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*

Probab=81.65  E-value=1.6  Score=37.14  Aligned_cols=47  Identities=13%  Similarity=0.034  Sum_probs=38.5

Q ss_pred             cceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          123 FGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       123 v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      -|.+|.+|-.   .+-.++++.|+++|.+||.|-+..++.|.+.||.-+.
T Consensus        98 ~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~  147 (367)
T 2poc_A           98 DDTCVFVSQSGETADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVH  147 (367)
T ss_dssp             TEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEE
Confidence            3567777754   4567788899999999999999888899999998664

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}

Probab=81.35  E-value=2.4  Score=32.59  Aligned_cols=49  Identities=18%  Similarity=0.139  Sum_probs=40.0

Q ss_pred             CchHHhhhhcEEEEEe-------------------ecceEEEEeCCCchHHHHHHHHHcCccEEEEecCC
Q 037201          106 GFADELKRAWFCVRNV-------------------RFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMS  156 (177)
Q Consensus       106 gLa~eLrRAGv~Vr~V-------------------~v~clvLVSDdsdf~~~lr~Ar~r~l~TVVVGd~~  156 (177)
                      |+..++++.|+.+...                   ++|.||+.+.+.  .+.++.+.+.++..|+|+...
T Consensus        28 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~~   95 (276)
T 3jy6_A           28 GISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEILHQQMPVVSVDREM   95 (276)
T ss_dssp             HHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHHHTTSSCEEEESCCC
T ss_pred             HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHHHHCCCCEEEEeccc
Confidence            4567777778777665                   889999988777  889999999999999998753

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=81.15  E-value=0.61  Score=29.47  Aligned_cols=25  Identities=16%  Similarity=0.123  Sum_probs=18.5

Q ss_pred             hh--hhcCCCcCChhHHHHHHHhhhhhh
Q 037201           48 LL--IRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        48 Lc--~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      .|  ..||..|.+...|..|.+ .|..|
T Consensus         3 ~C~~~~C~~~f~~~~~l~~H~~-~h~~~   29 (85)
T 2j7j_A            3 VCHFENCGKAFKKHNQLKVHQF-SHTQQ   29 (85)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHH-HHHTT
T ss_pred             cCCCCCCCcccCCHHHHHHHHH-HhCCC
Confidence            47  778888888888888864 56543

>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}

Probab=80.71  E-value=1.8  Score=36.37  Aligned_cols=47  Identities=11%  Similarity=0.000  Sum_probs=38.7

Q ss_pred             cceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          123 FGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       123 v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      -|++|.+|-.   .|-..+++.|+++|.+||.|-+..++.|.+.||.-+.
T Consensus        75 ~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~  124 (329)
T 3eua_A           75 KSLVILCSHSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQ  124 (329)
T ss_dssp             TEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEE
Confidence            3567778765   4566778889999999999999888999999998763

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=80.58  E-value=0.41  Score=33.97  Aligned_cols=24  Identities=17%  Similarity=0.322  Sum_probs=14.0

Q ss_pred             hhhhh--cCCCcCChhHHHHHHHhhh
Q 037201           47 CLLIR--NQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        47 ~Lc~~--CGrrf~t~~~L~kHFkqlH   70 (177)
                      +.|..  ||..|.+...|.+|.+..|
T Consensus       129 ~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          129 YVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             eeCCCCCCccccCCHHHHHHHHHhhc
Confidence            44655  6666666666666655443

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=80.36  E-value=0.62  Score=31.42  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=15.3

Q ss_pred             hhhhh--hcCCCcCChhHHHHHHHh
Q 037201           46 NCLLI--RNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        46 ~~Lc~--~CGrrf~t~~~L~kHFkq   68 (177)
                      .+.|.  .||..|.+...|..|.+.
T Consensus        36 ~~~C~~~~C~~~f~~~~~l~~H~~~   60 (119)
T 2jp9_A           36 PYQCDFKDCERRFSRSDQLKRHQRR   60 (119)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHH
Confidence            34476  577777777777777653

>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}

Probab=80.06  E-value=2.2  Score=36.26  Aligned_cols=47  Identities=11%  Similarity=0.119  Sum_probs=38.8

Q ss_pred             cceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhccccc
Q 037201          123 FGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       123 v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      -|++|.+|-.   .|-.++++.|+++|.+||.|-+..++.|.+.||..+.
T Consensus        83 ~dlvI~iS~SG~T~e~l~a~~~ak~~ga~~iaIT~~~~S~La~~aD~~l~  132 (352)
T 3g68_A           83 NTLVVGVSQGGSSYSTYNAMKLAEDKGCKIASMAGCKNALIDEISDYILT  132 (352)
T ss_dssp             TEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCSEECC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCChHHHhCCEEEE
Confidence            4567778765   4566788889999999999999888999999998765

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=80.06  E-value=0.42  Score=32.76  Aligned_cols=16  Identities=19%  Similarity=0.328  Sum_probs=8.2

Q ss_pred             cCCCcCChhHHHHHHH
Q 037201           52 NQGRFYNNDKLVNHFR   67 (177)
Q Consensus        52 CGrrf~t~~~L~kHFk   67 (177)
                      ||+.|.+...|.+|.+
T Consensus       100 C~~~f~~~~~L~~H~~  115 (124)
T 1ubd_C          100 CNKKFAQSTNLKSHIL  115 (124)
T ss_dssp             CCCCCSSTTTTHHHHH
T ss_pred             CCCccCCHHHHHHHHH
Confidence            5555555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.24
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	97.2
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.6
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	96.56
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	96.52
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	96.28
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.19
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	96.14
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	95.93
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.47
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	95.43
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.26
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	95.24
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.18
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	94.94
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	94.53
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	94.48
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.43
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	93.5
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	93.41
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	93.26
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	92.82
d1vima_	192	Hypothetical protein AF1796 {Archaeon Archaeoglobu	92.69
d1m3sa_	186	Hypothetical protein YckF {Bacillus subtilis [TaxI	92.24
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	91.95
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	90.66
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	90.11
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	89.78
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	87.54
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	85.91
d1x94a_	191	Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T	85.07
d2dria_	271	D-ribose-binding protein {Escherichia coli, strain	84.9
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	83.51
d1jeoa_	177	Probable 3-hexulose-6-phosphate isomerase MJ1247 {	82.04
d1r8ja2	135	N-terminal domain of the circadian clock protein K	81.31
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	80.87

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=2.1e-05  Score=48.63  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=28.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++++.|..||+.|.....|.+|-+.+|..|+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ek   33 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSER   33 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCC
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCc
Confidence            4667899999999999999999999999886

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=3.3e-05  Score=46.71  Aligned_cols=30  Identities=17%  Similarity=0.173  Sum_probs=27.1

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      |+++-|..||+.|....+|++|.++.|..|
T Consensus         6 ekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           6 EKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            577889999999999999999999999754

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.60  E-value=0.00027  Score=40.87  Aligned_cols=29  Identities=17%  Similarity=0.307  Sum_probs=24.1

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      +++.|.+||+.|.....|.+|- .+|..|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~-r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHY-RSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHH-HTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHccccc-CcccCCC
Confidence            3567999999999999999997 4676663

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00024  Score=42.31  Aligned_cols=29  Identities=24%  Similarity=0.405  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      |+++-|..||+.|....+|.+| ..+|..|
T Consensus         5 ekpy~C~~Cgk~F~~~~~L~~H-~r~HtgE   33 (33)
T d1x6ea1           5 EKPYGCVECGKAFSRSSILVQH-QRVHTGE   33 (33)
T ss_dssp             CCCEECSSSCCEESSHHHHHHH-HHGGGCS
T ss_pred             CCCeeCCCCCCEeCchHHhHhh-ccccCCC
Confidence            5678899999999999999999 5577655

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.00028  Score=42.49  Aligned_cols=29  Identities=14%  Similarity=0.224  Sum_probs=24.8

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      |+++-|.+||+.|....+|.+|.+ +|.-+
T Consensus         5 ekPy~C~~C~k~F~~~~~L~~H~r-~Ht~~   33 (35)
T d1srka_           5 KRPFVCRICLSAFTTKANCARHLK-VHTDT   33 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHG-GGTSC
T ss_pred             CccccCCCCCCcccChHHHHHHcc-ccCCc
Confidence            567889999999999999999975 77643

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.00044  Score=41.71  Aligned_cols=29  Identities=24%  Similarity=0.310  Sum_probs=24.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      |+++-|..||+.|.....|.+|-+ +|..|
T Consensus        10 ekpy~C~~CgK~F~~~s~L~~H~r-~HtGE   38 (38)
T d2cota2          10 RRRYKCDECGKSFSHSSDLSKHRR-THTGE   38 (38)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHT-TTCCS
T ss_pred             CCCEecCCCCceeeCHHHHHHhCc-cCCCC
Confidence            677889999999999999999954 66544

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.00062  Score=39.23  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=21.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHH
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      |+++.|.+||+.|...+.|.+|.+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCC
Confidence            567889999999999999999965

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0007  Score=40.08  Aligned_cols=28  Identities=18%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             hhhhhhhh--cCCCcCChhHHHHHHHhhhhh
Q 037201           44 KENCLLIR--NQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        44 er~~Lc~~--CGrrf~t~~~L~kHFkqlHer   72 (177)
                      ||++.|..  ||++|...++|++| ..+|..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H-~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRH-KKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHH-HGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHH-hhhccC
Confidence            56788988  99999999999999 445653

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0015  Score=39.16  Aligned_cols=27  Identities=19%  Similarity=0.126  Sum_probs=23.4

Q ss_pred             hhhhhhhhhcCCCcCChhHHHHHHHhhh
Q 037201           43 KKENCLLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        43 ~er~~Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      .|+++.|..||+.|....+|.+|.+ +|
T Consensus         8 geKPy~C~~C~k~F~~~~~L~~H~r-~H   34 (37)
T d1p7aa_           8 GIKPFQCPDCDRSFSRSDHLALHRK-RH   34 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHHHHHG-GG
T ss_pred             CccCeEeCCCCCEecCHHHHHHHHh-cC
Confidence            3677889999999999999999964 55

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.002  Score=43.81  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=26.2

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGEQKKRS   78 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerEr~Krl   78 (177)
                      +.|+.|++.|.|...|.+|+++---+.+-|+|
T Consensus        16 fYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L   47 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQL   47 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTTCHHHHHHHHHH
T ss_pred             EecccccCccCCHHHHHHHHcccHHHHHHHHh
Confidence            56999999999999999999987555455544

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0023  Score=36.84  Aligned_cols=28  Identities=21%  Similarity=0.409  Sum_probs=23.2

Q ss_pred             hhhhhhcCCCcCChhHHHHHHHhhhhhhh
Q 037201           46 NCLLIRNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        46 ~~Lc~~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++-|..||+.|.....|.+|-+. |..|+
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~-HtgeK   29 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKT-HQNKK   29 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHG-GGCCC
T ss_pred             CEECCcCCCeecchHHhhhhcCc-cCCcC
Confidence            35699999999999999999764 76653

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.002  Score=37.39  Aligned_cols=27  Identities=30%  Similarity=0.314  Sum_probs=22.6

Q ss_pred             hhhhhh--cCCCcCChhHHHHHHHhhhhhh
Q 037201           46 NCLLIR--NQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        46 ~~Lc~~--CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ++.|..  ||++|.+...|+.|.+ +|.-|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r-~HTGE   30 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVR-IHTGD   30 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHH-HHHCC
T ss_pred             CccCCCCCCCceECcHHHcCcccc-ccCCC
Confidence            466877  9999999999999986 68654

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0021  Score=38.30  Aligned_cols=27  Identities=19%  Similarity=0.271  Sum_probs=23.5

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      |+++-|..||..|.....|.+|.+.-|
T Consensus         6 ekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           6 EKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            567889999999999999999986544

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0023  Score=37.19  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=21.6

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHE   71 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHe   71 (177)
                      |.+.|..||.-|-...+|++||- +|.
T Consensus         1 r~hvc~ecgkaf~essklkrh~l-vht   26 (28)
T d1ubdc2           1 RVHVCAECGKAFVESSKLKRHQL-VHT   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGG-GTS
T ss_pred             CcchHHHHhHHHHHHHHHHHHhh-ccc
Confidence            45679999999999999999983 443

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.94  E-value=0.003  Score=36.81  Aligned_cols=24  Identities=13%  Similarity=0.079  Sum_probs=21.0

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHH
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      |+++.|-+|||+|-..++.++|-|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~k   24 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTK   24 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHG
T ss_pred             CCCcccchhhhhhhcchhhhhhhh
Confidence            456889999999999999999865

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.0034  Score=38.82  Aligned_cols=25  Identities=16%  Similarity=0.198  Sum_probs=12.2

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      +-| .||+.|.+...|..|- .+|..|
T Consensus         4 y~C-~Cgk~F~~~~~l~~H~-~~Ht~e   28 (53)
T d2csha1           4 YPC-QCGKSFTHKSQRDRHM-SMHLGL   28 (53)
T ss_dssp             EEC-TTSCEESSHHHHHHHH-HHHSCC
T ss_pred             CCC-CCCCeECCHHHhHHHh-hccccc
Confidence            345 3555555555555552 345444

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=94.48  E-value=0.0043  Score=36.88  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=23.1

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHE   71 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHe   71 (177)
                      +.|+.|||+|.-++-|++|-..||.
T Consensus         2 f~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           2 YPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             EECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             cccccccchhhHHHHHHHHHHHHhc
Confidence            6799999999999999999998885

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.0062  Score=35.32  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=21.7

Q ss_pred             hhhhhh--cCCCcCChhHHHHHHHhhhhh
Q 037201           46 NCLLIR--NQGRFYNNDKLVNHFRQIHEG   72 (177)
Q Consensus        46 ~~Lc~~--CGrrf~t~~~L~kHFkqlHer   72 (177)
                      ++.|..  ||+.|.....|.+|.+ +|.-
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r-~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLR-SHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHH-HTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcC-cCcC
Confidence            467888  9999999999999974 6653

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.50  E-value=0.0061  Score=38.25  Aligned_cols=31  Identities=13%  Similarity=0.115  Sum_probs=25.3

Q ss_pred             hhhhhhhhh--cCCCcCChhHHHHHHHhhhhhhh
Q 037201           43 KKENCLLIR--NQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        43 ~er~~Lc~~--CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      .|+++.|..  ||..|.....|.+| ..+|.-|+
T Consensus        15 gekpy~C~~~~C~k~F~~~~~L~~H-~r~Htgek   47 (47)
T d1ncsa_          15 PDKTFECLFPGCTKTFKRRYNIRSH-IQTHLEDR   47 (47)
T ss_dssp             TTTEEECCCTTCCCEECSSSSHHHH-HHHHTTTC
T ss_pred             CCCCeECCcCCCCccccCchHHHhh-cccccCCC
Confidence            357788987  99999999999999 55676553

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.0091  Score=36.80  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=21.9

Q ss_pred             hhhhhhhhcCCCcCChhHHHHHHHhhh
Q 037201           44 KENCLLIRNQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        44 er~~Lc~~CGrrf~t~~~L~kHFkqlH   70 (177)
                      |+++-|..||..|.+...|..|- ++|
T Consensus        28 ekpy~C~~C~k~F~~~~~L~~H~-r~H   53 (53)
T d2csha1          28 LRPYGCGVCGKKFKMKHHLVGHM-KIH   53 (53)
T ss_dssp             CCSEECTTTSCEESSSHHHHHHH-TTT
T ss_pred             ccCCcCCCcCCEecCHHHHHHHH-hcC
Confidence            45667999999999999999994 454

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.0096  Score=34.55  Aligned_cols=28  Identities=32%  Similarity=0.446  Sum_probs=22.6

Q ss_pred             hhhhh--hcCCCcCChhHHHHHHHhhhhhhh
Q 037201           46 NCLLI--RNQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        46 ~~Lc~--~CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      ++.|.  -||++|.....|..|.+ +|.-|+
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r-~HtgeK   31 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKR-THTGEK   31 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHT-TTSCCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcC-cccccC
Confidence            46685  49999999999999986 576653

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.82  E-value=0.012  Score=33.85  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             hhhhhh--cCCCcCChhHHHHHHHhhh
Q 037201           46 NCLLIR--NQGRFYNNDKLVNHFRQIH   70 (177)
Q Consensus        46 ~~Lc~~--CGrrf~t~~~L~kHFkqlH   70 (177)
                      ++.|..  ||+.|.+.++|.+|.+ +|
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r-~H   27 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIR-IH   27 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTH-HH
T ss_pred             CeECCCCCCCcEECchhHhhhhcC-cc
Confidence            466877  9999999999999975 45

>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein AF1796
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.69  E-value=0.078  Score=39.42  Aligned_cols=82  Identities=22%  Similarity=0.235  Sum_probs=59.7

Q ss_pred             hHHHHHHHHhhcCCCC----CCCc--------hHHhhhhcEEEEEe---------ecceEEEEeC---CCchHHHHHHHH
Q 037201           88 MEKYKMAVSAILTPKV----GYGF--------ADELKRAWFCVRNV---------RFGCLMVVSD---DSNFVEVFQEAT  143 (177)
Q Consensus        88 ~~KY~~Aar~vl~pkv----gygL--------a~eLrRAGv~Vr~V---------~v~clvLVSD---dsdf~~~lr~Ar  143 (177)
                      .+.+++++.-+...+.    |.|-        +..|.+-|..|..+         .-|+++++|=   ..+..++++.|+
T Consensus        27 ~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~~~~~~~i~~~Dl~i~iS~sG~t~~~i~~~~~ak  106 (192)
T d1vima_          27 LETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAK  106 (192)
T ss_dssp             HHHHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcEEEEecCcchhhhhhhhhhhcccccccccccccccccccccccceeccccccchhhHHHHHHHH
Confidence            3556666665555443    5542        34567788887776         5577888883   456677888899


Q ss_pred             HcCccEEEEecCCchhhhhhhccccc
Q 037201          144 LRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       144 ~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      ++|.++|.|=|..+..|.+.||..|.
T Consensus       107 ~~g~~vI~IT~~~~s~l~~~ad~~l~  132 (192)
T d1vima_         107 DIGSKLVAVTGKRDSSLAKMADVVMV  132 (192)
T ss_dssp             HHTCEEEEEESCTTSHHHHHCSEEEE
T ss_pred             hhcccceeeeeccccccccccceEEE
Confidence            99999999988777899999998773

>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein YckF
species: Bacillus subtilis [TaxId: 1423]

Probab=92.24  E-value=0.1  Score=38.56  Aligned_cols=82  Identities=16%  Similarity=0.146  Sum_probs=58.0

Q ss_pred             hHHHHHHHHhhcCCCC----CCC--------chHHhhhhcEEEEEe---------ecceEEEEeCC---CchHHHHHHHH
Q 037201           88 MEKYKMAVSAILTPKV----GYG--------FADELKRAWFCVRNV---------RFGCLMVVSDD---SNFVEVFQEAT  143 (177)
Q Consensus        88 ~~KY~~Aar~vl~pkv----gyg--------La~eLrRAGv~Vr~V---------~v~clvLVSDd---sdf~~~lr~Ar  143 (177)
                      .+..++++..+...+.    |.|        ++..|.+-|+.+-.+         .-|+++.+|-.   .+-.++++.|+
T Consensus        24 ~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~Dl~I~iS~sG~t~~~i~~~~~ak  103 (186)
T d1m3sa_          24 NEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTAAKAK  103 (186)
T ss_dssp             HHHHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCeEEEEECcHHHHHHHHHHHHHHhccCCCCcCChhhcccCCCCCEEEEecCccchhhhHHHHHHHH
Confidence            3455555555544443    322        334467788877665         55788888865   45567788888


Q ss_pred             HcCccEEEEecCCchhhhhhhccccc
Q 037201          144 LRCLKMVVVGDMSDGALKRIANAFFS  169 (177)
Q Consensus       144 ~r~l~TVVVGd~~~~~L~r~Ad~~~s  169 (177)
                      ++|.++|.|-+..+..|.+.||..+.
T Consensus       104 ~~g~~iI~IT~~~~s~La~~ad~~i~  129 (186)
T d1m3sa_         104 SLHGIVAALTINPESSIGKQADLIIR  129 (186)
T ss_dssp             HTTCEEEEEESCTTSHHHHHCSEEEE
T ss_pred             HCCCCEEEEecCCCchhhHhCCEEEE
Confidence            99999999988777999999997763

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.018  Score=32.94  Aligned_cols=23  Identities=13%  Similarity=0.130  Sum_probs=19.7

Q ss_pred             hhhhhh--cCCCcCChhHHHHHHHh
Q 037201           46 NCLLIR--NQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        46 ~~Lc~~--CGrrf~t~~~L~kHFkq   68 (177)
                      ++.|..  ||+.|.+.++|++|.+.
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            466877  99999999999999753

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=0.057  Score=31.17  Aligned_cols=22  Identities=18%  Similarity=0.082  Sum_probs=19.7

Q ss_pred             hhhhhcCCCcCChhHHHHHHHh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQ   68 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkq   68 (177)
                      ..|..||++|.--.-|+||.+.
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs   23 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT   23 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH
T ss_pred             ccccccCcccCCHHHHHHHHHH
Confidence            4699999999999999999874

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.046  Score=32.45  Aligned_cols=26  Identities=15%  Similarity=0.239  Sum_probs=21.4

Q ss_pred             hhhh--cCCCcCChhHHHHHHHhhhhhhh
Q 037201           48 LLIR--NQGRFYNNDKLVNHFRQIHEGEQ   74 (177)
Q Consensus        48 Lc~~--CGrrf~t~~~L~kHFkqlHerEr   74 (177)
                      .|..  ||+.|.....|++|.+ +|.-|+
T Consensus         3 ~C~~~~C~k~F~~~~~L~~H~r-~Htgek   30 (36)
T d2dlka2           3 SCPEPACGKSFNFKKHLKEHMK-LHSDTR   30 (36)
T ss_dssp             ECSCTTTCCEESSHHHHHHHHH-HHHTSC
T ss_pred             ECCCCCCCCeeCChhHhccccC-eeCCCC
Confidence            4665  9999999999999965 488765

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.055  Score=30.47  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=19.0

Q ss_pred             hhhhhhcCCCcCChhHHHHHHH
Q 037201           46 NCLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        46 ~~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      ++-|..||..|.....|.+|-+
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCcc
Confidence            3559999999999999999954

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.54  E-value=0.057  Score=32.91  Aligned_cols=31  Identities=13%  Similarity=0.212  Sum_probs=27.0

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHHhhhhhhhhh
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFRQIHEGEQKK   76 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFkqlHerEr~K   76 (177)
                      +.+.|..|++.|.+---|==| ...|-+||.+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH-~~~Hr~~r~~   34 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGH-MNVHRRDRAR   34 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHH-HHTTCCSCTT
T ss_pred             CccCCCCCCCccCCcccccch-HhhhcchHHH
Confidence            457899999999999999999 6889888764

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.91  E-value=0.16  Score=28.64  Aligned_cols=21  Identities=29%  Similarity=0.216  Sum_probs=18.4

Q ss_pred             hhhhhcCCCcCChhHHHHHHH
Q 037201           47 CLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      +-|.+||.-|...++|+-|.+
T Consensus         2 hkc~~c~kcfsrkdklk~hmr   22 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMR   22 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGG
T ss_pred             CccchhhhHhcchhHHHHHhh
Confidence            359999999999999998865

>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Vibrio cholerae [TaxId: 666]

Probab=85.07  E-value=0.48  Score=35.52  Aligned_cols=46  Identities=15%  Similarity=0.259  Sum_probs=39.1

Q ss_pred             cceEEEEeCC---CchHHHHHHHHHcCccEEEEecCCchhhhhhhcccc
Q 037201          123 FGCLMVVSDD---SNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFF  168 (177)
Q Consensus       123 v~clvLVSDd---sdf~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~  168 (177)
                      =|+|++.|..   ++-.++++.|+++|++|+.+=...++.|++.+|+-+
T Consensus       112 gDvli~iS~SG~s~~ii~a~~~Ak~~g~~~i~it~~~~~~l~~~~D~~I  160 (191)
T d1x94a_         112 GDVLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGKDGGKMAGLADVEI  160 (191)
T ss_dssp             TCEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTTSSEEE
T ss_pred             CCEEEEEecCCccccchhhHHHHHhCCCeEEEEecCCCCcccccCCEEE
Confidence            4889999864   457788899999999999998877889999999865

>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-ribose-binding protein
species: Escherichia coli, strain k-12 [TaxId: 562]

Probab=84.90  E-value=0.61  Score=33.51  Aligned_cols=51  Identities=8%  Similarity=0.081  Sum_probs=43.1

Q ss_pred             CCchHHhhhhcEEEEEe-------------------ecceEEEEeC-CCchHHHHHHHHHcCccEEEEecC
Q 037201          105 YGFADELKRAWFCVRNV-------------------RFGCLMVVSD-DSNFVEVFQEATLRCLKMVVVGDM  155 (177)
Q Consensus       105 ygLa~eLrRAGv~Vr~V-------------------~v~clvLVSD-dsdf~~~lr~Ar~r~l~TVVVGd~  155 (177)
                      .|+..++++.|+.+.+.                   |+|.+++..- ...+.+.++.+++.++..|+++..
T Consensus        21 ~gi~~~a~~~g~~~~i~~~~~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~   91 (271)
T d2dria_          21 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ   91 (271)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCcccccccccccchHHHHHHHhhcceeEEEeccc
Confidence            47888999999998776                   8999988865 456789999999999999999753

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.51  E-value=0.2  Score=29.10  Aligned_cols=27  Identities=19%  Similarity=0.133  Sum_probs=24.5

Q ss_pred             hhhhhcCCCcCChhHHHHHHHhhhhhh
Q 037201           47 CLLIRNQGRFYNNDKLVNHFRQIHEGE   73 (177)
Q Consensus        47 ~Lc~~CGrrf~t~~~L~kHFkqlHerE   73 (177)
                      ..|..|..|+-...+|+-|.|+.|-.|
T Consensus         3 y~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           3 YQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             ccccccccccccchhhhhhhhcccccC
Confidence            458899999999999999999999876

>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Probable 3-hexulose-6-phosphate isomerase MJ1247
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.04  E-value=1.1  Score=32.57  Aligned_cols=63  Identities=16%  Similarity=0.079  Sum_probs=46.1

Q ss_pred             hHHhhhhcEEEEEe---------ecceEEEEeCCCch---HHHHHHHHHcCccEEEEecCCchhhhhhhccccchh
Q 037201          108 ADELKRAWFCVRNV---------RFGCLMVVSDDSNF---VEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWS  171 (177)
Q Consensus       108 a~eLrRAGv~Vr~V---------~v~clvLVSDdsdf---~~~lr~Ar~r~l~TVVVGd~~~~~L~r~Ad~~~sW~  171 (177)
                      +.-|.+-|+.+..+         .-|+++.+|-.-.-   .++++.|+++|.++|.|-+. ...|.+.||+-++..
T Consensus        56 ~~~l~~lg~~~~~~~~~~~~~~~~~Dl~I~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~~-~~~l~~~aD~~l~~~  130 (177)
T d1jeoa_          56 AMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCE-CGNVVEFADLTIPLE  130 (177)
T ss_dssp             HHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESS-CCGGGGGCSEEEECC
T ss_pred             HHHHHhcCCcccccccccccccCCCCeEEEeccccchHHHHHHHHHHHHcCCceeEEecC-CCcHHHhcCceEEEe
Confidence            44566777766655         44678888866544   45667778899999999976 477999999887653

>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian clock protein KaiA {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: N-terminal domain of the circadian clock protein KaiA
domain: N-terminal domain of the circadian clock protein KaiA
species: Synechococcus elongatus [TaxId: 32046]

Probab=81.31  E-value=0.91  Score=33.73  Aligned_cols=35  Identities=29%  Similarity=0.593  Sum_probs=30.6

Q ss_pred             ecceEEEEeCCCchHHHHHHHHHcC--ccEEEEecCC
Q 037201          122 RFGCLMVVSDDSNFVEVFQEATLRC--LKMVVVGDMS  156 (177)
Q Consensus       122 ~v~clvLVSDdsdf~~~lr~Ar~r~--l~TVVVGd~~  156 (177)
                      .||||||+.++.+...++.--.++|  +-+||||+.+
T Consensus        50 ~iDcLVl~~~~~~l~~l~~qL~~~GlLlPaViv~~~~   86 (135)
T d1r8ja2          50 QIDCLILVAANPSFRAVVQQLCFEGVVVPAIVVGDRD   86 (135)
T ss_dssp             SCSEEEEETTSTTHHHHHHHHHHTTCCCCEEEESCCC
T ss_pred             cCCEEEEEecCCccHHHHHHHHhcCccccEEEEecCC
Confidence            7999999999999999998888877  5899999753

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.87  E-value=0.22  Score=29.25  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=19.0

Q ss_pred             hhhhhhhcCCCcCChhHHHHHHH
Q 037201           45 ENCLLIRNQGRFYNNDKLVNHFR   67 (177)
Q Consensus        45 r~~Lc~~CGrrf~t~~~L~kHFk   67 (177)
                      .++.|++|+.||+..+...-|-+
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvr   24 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVR   24 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHH
T ss_pred             CCcccchHHHHhhccccceEeee
Confidence            45779999999999988877654