Citrus Sinensis ID: 037204

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
LQLKPRAFESFNVSYIQNLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLLLCALL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEcccccEEEEEcccccccccccccccccEEEEcccccccEEEEEEEEcccccEEcEEEEEccccccEEEEEccccccccccccccccccccccccccccEEEHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccHHHcccHHHHcccccEEEEEEEEccccccccccEEEEEEEcccccEEEEcccccccccccccccccEEEEEccccccEEEEEEEEEccccccccEEEEEccccccEEEEEccccccccEEcccccccccHHHHHcHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
lqlkprafESFNVSYIQNLGSCSYTVVITtscssskytrDQISIAFgdaygnqiyaprlddpstdafescssdtfeirgpcayqICYVYLyrtgpdgwkpesvkiygansraVSFYyntfipsdiwygfnlcrsassahqqhvprWSVYVILGLLLCALL
Flexible Loop (DISEMBL)
LQLKPRAFESFNVSYIQNLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLLLCALL
Low Complexity Region (SEG)
LQLKPRAFESFNVSYIQNLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLLLCALL
Disordered region (IsUnstruct)
*******FESFNVSYIQNLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDD**TDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLLLCAL*
Disordered Region (DISOPRED)
******************LGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLCRS***********WSVYVILGLLLCALL
Disordered Region (DISEMBL)
LQLKPRAFESFNVSYIQNLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLLLCALL
Disordered Region (DISPRO)
LQLKPRAFESFNVSYIQNLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLLLCALL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LQLKPRAFESFNVSYIQNLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLLLCALL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
224134573	188	predicted protein [Populus trichocarpa]	0.962	0.819	0.701	7e-61
351727573	188	uncharacterized protein LOC100499692 pre	1.0	0.851	0.693	8e-60
388519799	189	unknown [Medicago truncatula]	0.975	0.825	0.708	3e-59
357444229	189	Embryo-specific protein [Medicago trunca	0.975	0.825	0.702	1e-58
388504722	189	unknown [Medicago truncatula]	0.968	0.820	0.700	6e-58
351722061	190	uncharacterized protein LOC100305495 pre	0.975	0.821	0.693	5e-57
255539653	183	conserved hypothetical protein [Ricinus	1.0	0.874	0.631	8e-55
15241727	190	Embryo-specific protein 3, (ATS3) [Arabi	0.962	0.810	0.647	3e-54
8809633	231	unnamed protein product [Arabidopsis tha	0.95	0.658	0.655	3e-54
51970014	180	unknown protein [Arabidopsis thaliana]	0.962	0.855	0.647	4e-54

>gi|224134573|ref|XP_002321856.1| predicted protein [Populus trichocarpa] gi|222868852|gb|EEF05983.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 108/154 (70%), Positives = 130/154 (84%)

Query: 2   QLKPRAFESFNVSYIQNLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDD 61
            L+P+  ESFN+S +QN GSC YTV+I+TSCSS +YTRDQI I+FGDAYGNQIY PRLDD
Sbjct: 30  HLQPQPLESFNLSLVQNAGSCYYTVLISTSCSSPRYTRDQIGISFGDAYGNQIYTPRLDD 89

Query: 62  PSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFI 121
           PST  FE CSSDTF+I GPCAYQICYVYLYR+G DGWKP++V+I G  SR V+F YNTFI
Sbjct: 90  PSTGTFERCSSDTFQISGPCAYQICYVYLYRSGRDGWKPDTVQISGYYSRTVTFTYNTFI 149

Query: 122 PSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLL 155
           P D+WYGFNLC++ASSA QQ +P+W ++VIL +L
Sbjct: 150 PRDVWYGFNLCQNASSALQQRIPKWFMFVILAVL 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727573|ref|NP_001238445.1| uncharacterized protein LOC100499692 precursor [Glycine max] gi|255625831|gb|ACU13260.1| unknown [Glycine max]

 Score =  234 bits (597), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 113/163 (69%), Positives = 133/163 (81%), Gaps = 3/163 (1%)

Query: 1   LQLKPRAFESFNVSYIQ--NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPR 58
           + L P A ESFNVSYIQ  N G+CSY VVI+TSCSS +YTRDQISI+FGDAYGNQIYAPR
Sbjct: 26  VSLLPHAAESFNVSYIQMKNAGTCSYLVVISTSCSSPRYTRDQISISFGDAYGNQIYAPR 85

Query: 59  LDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYN 118
           LDDP++  FESCSSDTF+I GPCAYQICYVYLYR+G DGWKPESVKI   N RAV+FYYN
Sbjct: 86  LDDPASGTFESCSSDTFQITGPCAYQICYVYLYRSGLDGWKPESVKINSYNGRAVTFYYN 145

Query: 119 TFIPSDIWYGFNLCRSA-SSAHQQHVPRWSVYVILGLLLCALL 160
           T+IP D WYGFNLC  A SS++Q  + +W ++++LG +L   L
Sbjct: 146 TYIPRDTWYGFNLCNGASSSSYQVSMQKWLIFMVLGFVLSCWL 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519799|gb|AFK47961.1| unknown [Medicago truncatula]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 127/158 (80%), Gaps = 2/158 (1%)

Query: 1   LQLKPRAFESFNVSYIQ--NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPR 58
           + L P A ESFN+SYIQ  N GSCSY VVI+TSCSS +YT DQISIAFGDAYGNQIYAPR
Sbjct: 28  VSLLPHANESFNISYIQMKNAGSCSYFVVISTSCSSPRYTSDQISIAFGDAYGNQIYAPR 87

Query: 59  LDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYN 118
           LDDPS+  FESCSSDTF+I GPCAYQICYVYLYR+G  GWKPESVKI G N   V+FYYN
Sbjct: 88  LDDPSSGTFESCSSDTFQINGPCAYQICYVYLYRSGSSGWKPESVKINGYNGEPVTFYYN 147

Query: 119 TFIPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLLL 156
           TFIP D WYGFNLC  A+S+++    +W + VILG +L
Sbjct: 148 TFIPRDTWYGFNLCNDAASSYKVSAQKWLILVILGFVL 185

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444229|ref|XP_003592392.1| Embryo-specific protein [Medicago truncatula] gi|355481440|gb|AES62643.1| Embryo-specific protein [Medicago truncatula]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/158 (70%), Positives = 127/158 (80%), Gaps = 2/158 (1%)

Query: 1   LQLKPRAFESFNVSYIQ--NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPR 58
           + L P A ESFN+SYIQ  N GSCSY VVI+TSCSS +YT DQISIAFGDAYGNQIYAPR
Sbjct: 28  VSLLPHANESFNISYIQMKNAGSCSYFVVISTSCSSPRYTSDQISIAFGDAYGNQIYAPR 87

Query: 59  LDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYN 118
           LDDPS+  FESCSSDTF+I GPCAYQICYVYLYR+G  GWKPESVKI G +   V+FYYN
Sbjct: 88  LDDPSSGTFESCSSDTFQINGPCAYQICYVYLYRSGSSGWKPESVKINGYSGEPVTFYYN 147

Query: 119 TFIPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLLL 156
           TFIP D WYGFNLC  A+S+++    +W + VILG +L
Sbjct: 148 TFIPRDTWYGFNLCNDAASSYKVSAQKWLILVILGFVL 185

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504722|gb|AFK40427.1| unknown [Medicago truncatula]

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 110/157 (70%), Positives = 126/157 (80%), Gaps = 2/157 (1%)

Query: 1   LQLKPRAFESFNVSYIQ--NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPR 58
           + L P A ESFN+SYIQ  N GSCSY VVI+TSCSS +YT DQISIAFGDAYGNQIYAPR
Sbjct: 28  VSLLPHANESFNISYIQMKNAGSCSYFVVISTSCSSPRYTSDQISIAFGDAYGNQIYAPR 87

Query: 59  LDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYN 118
           LDDPS+  FESCSSDTF+I GPCAYQICYVYLYR+G  GWKPESVKI G +   V+FYYN
Sbjct: 88  LDDPSSGTFESCSSDTFQINGPCAYQICYVYLYRSGSSGWKPESVKINGYSGEPVTFYYN 147

Query: 119 TFIPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLL 155
           TFIP D WYGFNLC  A+S+++    +W + VILG +
Sbjct: 148 TFIPRDTWYGFNLCNDAASSYKVSAQKWLILVILGFV 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722061|ref|NP_001236207.1| uncharacterized protein LOC100305495 precursor [Glycine max] gi|255625691|gb|ACU13190.1| unknown [Glycine max]

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 111/160 (69%), Positives = 131/160 (81%), Gaps = 4/160 (2%)

Query: 5   PRAFESFNVSYIQ--NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDP 62
           P A +SFNVSYIQ  N G+CSY+VVITTSCSS +YTRDQISI+FGDAYGN IYAPRLDDP
Sbjct: 31  PHAADSFNVSYIQMKNAGTCSYSVVITTSCSSPRYTRDQISISFGDAYGNPIYAPRLDDP 90

Query: 63  STDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIP 122
           ++  FESCSSDTF+I GPCAYQICYVYLYR+G DGWKPESVKI G N R V+FYYNT+IP
Sbjct: 91  ASGTFESCSSDTFQITGPCAYQICYVYLYRSGLDGWKPESVKINGYNGRPVTFYYNTYIP 150

Query: 123 SDIWYGFNLCRSA--SSAHQQHVPRWSVYVILGLLLCALL 160
            D WYGFNLC  A  SS++Q  + +W ++++LG +L   L
Sbjct: 151 RDTWYGFNLCNGASSSSSYQVSMQKWLIFMVLGFVLSCWL 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539653|ref|XP_002510891.1| conserved hypothetical protein [Ricinus communis] gi|223550006|gb|EEF51493.1| conserved hypothetical protein [Ricinus communis]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 101/160 (63%), Positives = 124/160 (77%)

Query: 1   LQLKPRAFESFNVSYIQNLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLD 60
           + L+P+A ++FN+S IQ +GSC YTV+I+TSC+S KYTRDQIS+AFGDAYGNQIY PRLD
Sbjct: 24  ISLQPQALDAFNLSLIQTVGSCKYTVIISTSCTSPKYTRDQISLAFGDAYGNQIYVPRLD 83

Query: 61  DPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTF 120
           DPS  AFESCSSDTF + GPC  QICY+YLYR+GPDGW P  V IYG  S   +F + T 
Sbjct: 84  DPSIRAFESCSSDTFHVTGPCTSQICYIYLYRSGPDGWIPGRVDIYGYKSFPSTFNFYTP 143

Query: 121 IPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLLLCALL 160
           IP+DIWYGFN C SASSAH + + RW +Y IL ++   +L
Sbjct: 144 IPNDIWYGFNRCGSASSAHVRRIRRWFLYPILAVVASLML 183

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241727|ref|NP_201026.1| Embryo-specific protein 3, (ATS3) [Arabidopsis thaliana] gi|38603856|gb|AAR24673.1| At5g62200 [Arabidopsis thaliana] gi|51968404|dbj|BAD42894.1| unknown protein [Arabidopsis thaliana] gi|51970212|dbj|BAD43798.1| unknown protein [Arabidopsis thaliana] gi|332010197|gb|AED97580.1| Embryo-specific protein 3, (ATS3) [Arabidopsis thaliana]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/156 (64%), Positives = 123/156 (78%), Gaps = 2/156 (1%)

Query: 5   PRAFESFNVSYIQNLG-SCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPS 63
           P   ESFNVS IQ LG +C+YTV+I+TSCSS++YTRDQIS+AFGD YGNQIYAPRLDDPS
Sbjct: 30  PHVAESFNVSLIQKLGNTCAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPS 89

Query: 64  TDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPS 123
           T  FE CSSDTF+I GPC YQICYVYLYR+GPDGW P +VKIY   S+AV+F YNT++P 
Sbjct: 90  TKTFEQCSSDTFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPE 149

Query: 124 DIWYGFNLCRSASSAHQQHVP-RWSVYVILGLLLCA 158
            +WYGFN C SAS ++   +  R SV ++LG ++  
Sbjct: 150 SVWYGFNYCNSASDSNVLAIGLRRSVIILLGFVVAG 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8809633|dbj|BAA97184.1| unnamed protein product [Arabidopsis thaliana]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/154 (65%), Positives = 123/154 (79%), Gaps = 2/154 (1%)

Query: 5   PRAFESFNVSYIQNLG-SCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPS 63
           P   ESFNVS IQ LG +C+YTV+I+TSCSS++YTRDQIS+AFGD YGNQIYAPRLDDPS
Sbjct: 30  PHVAESFNVSLIQKLGNTCAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPS 89

Query: 64  TDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPS 123
           T  FE CSSDTF+I GPC YQICYVYLYR+GPDGW P +VKIY   S+AV+F YNT++P 
Sbjct: 90  TKTFEQCSSDTFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPE 149

Query: 124 DIWYGFNLCRSASSAHQQHVP-RWSVYVILGLLL 156
            +WYGFN C SAS ++   +  R SV ++LG ++
Sbjct: 150 SVWYGFNYCNSASDSNVLAIGLRRSVIILLGFVV 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51970014|dbj|BAD43699.1| unknown protein [Arabidopsis thaliana]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 101/156 (64%), Positives = 123/156 (78%), Gaps = 2/156 (1%)

Query: 5   PRAFESFNVSYIQNLG-SCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPS 63
           P   ESFNVS IQ LG +C+YTV+I+TSCSS++YTRDQIS+AFGD YGNQIYAPRLDDPS
Sbjct: 20  PHVAESFNVSLIQKLGNTCAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPS 79

Query: 64  TDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPS 123
           T  FE CSSDTF+I GPC YQICYVYLYR+GPDGW P +VKIY   S+AV+F YNT++P 
Sbjct: 80  TKTFEQCSSDTFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPE 139

Query: 124 DIWYGFNLCRSASSAHQQHVP-RWSVYVILGLLLCA 158
            +WYGFN C SAS ++   +  R SV ++LG ++  
Sbjct: 140 SVWYGFNYCNSASDSNVLAIGLRRSVIILLGFVVAG 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:2167908	190	AT5G62200 "AT5G62200" [Arabido	0.95	0.8	0.655	1.3e-54
TAIR|locus:4515102981	179	AT2G41475 "AT2G41475" [Arabido	0.806	0.720	0.6	8.1e-44
TAIR|locus:2167928	223	AT5G62210 "AT5G62210" [Arabido	0.712	0.511	0.534	3.7e-32
TAIR|locus:2182865	213	ATS3 "AT5G07190" [Arabidopsis	0.843	0.633	0.442	1.2e-28

TAIR|locus:2167908 AT5G62200 "AT5G62200" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 101/154 (65%), Positives = 123/154 (79%)

Query:     5 PRAFESFNVSYIQNLGS-CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPS 63
             P   ESFNVS IQ LG+ C+YTV+I+TSCSS++YTRDQIS+AFGD YGNQIYAPRLDDPS
Sbjct:    30 PHVAESFNVSLIQKLGNTCAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPS 89

Query:    64 TDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPS 123
             T  FE CSSDTF+I GPC YQICYVYLYR+GPDGW P +VKIY   S+AV+F YNT++P 
Sbjct:    90 TKTFEQCSSDTFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPE 149

Query:   124 DIWYGFNLCRSASSAHQQHVP-RWSVYVILGLLL 156
              +WYGFN C SAS ++   +  R SV ++LG ++
Sbjct:   150 SVWYGFNYCNSASDSNVLAIGLRRSVIILLGFVV 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:4515102981 AT2G41475 "AT2G41475" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 78/130 (60%), Positives = 101/130 (77%)

Query:     4 KPRAFESFNVS-YIQNLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDP 62
             KP   +SF     ++N  +CSYTV+I TSCSS  YTRD+ISI+FGD YGN++Y  RLDDP
Sbjct:    29 KPLPIDSFIPKPKLENAAACSYTVIIKTSCSSVSYTRDKISISFGDVYGNEVYVKRLDDP 88

Query:    63 STDAFESCSSDTFEIRGPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIP 122
             S+  FE CSSDT++I GPC   +CY+YL R G DGWKPE+VKIYG++ R+V+FYYN F+P
Sbjct:    89 SSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSDGWKPENVKIYGSSIRSVTFYYNLFLP 148

Query:   123 SDIWYGFNLC 132
             + +WYGFN+C
Sbjct:   149 NSVWYGFNVC 158

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2167928 AT5G62210 "AT5G62210" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 62/116 (53%), Positives = 83/116 (71%)

Query:    21 SCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDA--FESCSSDTFEIR 78
             SC YTV++TTSC S  ++RDQ++IA GDA  NQ+ APRLD P +    FE CSSDTF+++
Sbjct:    39 SCPYTVIVTTSCFSPDWSRDQVTIALGDADDNQVVAPRLDKPLSGGGGFEKCSSDTFQVK 98

Query:    79 GPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLCRS 134
             G C   IC VY+YR+G DGW PE+V+IY   S++V F +N  +P +IWYG N C +
Sbjct:    99 GKCLNTICSVYIYRSGTDGWIPETVEIYKEGSKSVKFDFNKNVPENIWYGNNYCNN 154

GO:0003674 "molecular_function" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2182865 ATS3 "AT5G07190" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 62/140 (44%), Positives = 87/140 (62%)

Query:    10 SFNVSYIQ-NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDD--PSTDA 66
             +F++S IQ   G+C YTVV+ TSC S + TRDQISI FGDA GN++YAP+L         
Sbjct:    21 AFDLSIIQMQQGTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGG 80

Query:    67 FESCSSDTFEIRGPCAYQ-ICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPS-D 124
                CS++TF++RG C    IC +Y+ R GPDGW PES++IY   S++V F ++  +P  +
Sbjct:    81 LGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLN 140

Query:   125 IWYGFNLCRSASSAHQQHVP 144
              WYG N C +        +P
Sbjct:   141 TWYGHNNCNTTGRPSSPDLP 160


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      160       160   0.00097  106 3  11 22  0.47    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  168 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.55u 0.14s 15.69t   Elapsed:  00:00:00
  Total cpu time:  15.55u 0.14s 15.69t   Elapsed:  00:00:00
  Start:  Sat May 11 03:53:45 2013   End:  Sat May 11 03:53:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;TAS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
pfam06232	126	pfam06232, ATS3, Embryo-specific protein 3, (ATS3)	1e-64
cd00113	116	cd00113, PLAT, PLAT (Polycystin-1, Lipoxygenase, A	2e-28

>gnl|CDD|218949 pfam06232, ATS3, Embryo-specific protein 3, (ATS3)

 Score =  193 bits (492), Expect = 1e-64
 Identities = 76/114 (66%), Positives = 90/114 (78%), Gaps = 1/114 (0%)

Query: 20  GSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTD-AFESCSSDTFEIR 78
            SCSYTV+I TSCSS  YT DQISIAFGDAYGNQ+Y PRLDDPS+   FE C++DTF++ 
Sbjct: 13  SSCSYTVIIKTSCSSPAYTTDQISIAFGDAYGNQVYVPRLDDPSSGGGFERCTTDTFQVS 72

Query: 79  GPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLC 132
           GPC Y ICY+YLYR+G DGW PE+V IYG     V+FY+NTF+P  +WYGFN C
Sbjct: 73  GPCTYPICYLYLYRSGTDGWIPETVTIYGYGYPPVTFYFNTFLPEGVWYGFNYC 126

Family of plant seed-specific proteins. Length = 126

>gnl|CDD|238061 cd00113, PLAT, PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain

 Score =  101 bits (253), Expect = 2e-28
 Identities = 39/116 (33%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 22  CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGP- 80
           C YTV I T       T   IS+A     GN    P LD P +  FE  S+DTF+I    
Sbjct: 1   CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIPILDGPGS--FERGSTDTFQIDLKL 58

Query: 81  CAYQICYVYLYRTGP---DGWKPESVKIYGANSRAV-SFYYNTFIPSDIWYGFNLC 132
               I  VYL R G    DGW  ES+ +    ++ V +F  N ++    WY     
Sbjct: 59  DIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRS 114

It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
PF06232	125	ATS3: Embryo-specific protein 3, (ATS3); InterPro:	100.0
cd01754	129	PLAT_plant_stress PLAT/LH2 domain of plant-specifi	99.97
cd01753	113	PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a u	99.96
cd00113	116	PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin	99.95
cd01756	120	PLAT_repeat PLAT/LH2 domain repeats of family of p	99.95
cd01752	120	PLAT_polycystin PLAT/LH2 domain of polycystin-1 li	99.95
cd02899	109	PLAT_SR Scavenger receptor protein. A subfamily of	99.93
smart00308	105	LH2 Lipoxygenase homology 2 (beta barrel) domain.	99.91
cd01757	114	PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 inter	99.89
PF01477	113	PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxyg	99.85
cd01755	120	PLAT_lipase PLAT/ LH2 domain present in connection	99.56
cd01758	137	PLAT_LPL PLAT/ LH2 domain present in lipoprotein l	99.33
cd01759	113	PLAT_PL PLAT/LH2 domain of pancreatic triglyceride	97.6
KOG2080	1295	consensus Uncharacterized conserved protein, conta	97.15
TIGR03230	442	lipo_lipase lipoprotein lipase. Members of this pr	96.45

>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress)

Probab=100.00  E-value=3.7e-48  Score=296.68  Aligned_cols=115  Identities=70%  Similarity=1.386  Sum_probs=112.8

Q ss_pred             cCCCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCC-CCccCCcceeeeeecCCCCccEEEEEEEcCCC
Q 037204           18 NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPST-DAFESCSSDTFEIRGPCAYQICYVYLYRTGPD   96 (160)
Q Consensus        18 ~~~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~-~~FErgs~DtF~v~g~clg~ic~l~L~~dg~d   96 (160)
                      +.++|+|+|+|||||+++|||+|+|||+|+|++||++++++||+|.+ ++||||++|+|+|+|+|+++||+|+|+|+|+|
T Consensus        10 ~~~~CsYtv~IkTsC~s~a~T~d~Isi~FgDa~Gn~v~~~~Ld~p~~~~~FErCs~DtF~v~G~C~~~IC~lyL~r~G~d   89 (125)
T PF06232_consen   10 QAGSCSYTVTIKTSCSSPAGTDDQISIAFGDAYGNQVYVPRLDDPGSGDTFERCSTDTFQVTGPCLYQICYLYLYRSGSD   89 (125)
T ss_pred             cCCCCcEEEEEEeCcCCCcCCcceEEEEEecCCCCEEEEccCCCCCccCchhcCCcceeEeecccCCcccEEEEEEccCC
Confidence            67789999999999999999999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             CceeeEEEEecCCCCeEEEEeceecCCCCceecccC
Q 037204           97 GWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLC  132 (160)
Q Consensus        97 gW~~e~V~V~~~~~~~~~F~~n~WL~~~~~yg~n~C  132 (160)
                      ||+||+|+|++.+.++++|++|+|||+++|||+|+|
T Consensus        90 GW~Pe~V~Iy~~~~~~~~F~~~~~lp~~vwyG~n~C  125 (125)
T PF06232_consen   90 GWKPEWVQIYGSGSKPVTFYFNTFLPNGVWYGFNYC  125 (125)
T ss_pred             CCEeCeEEEEEcCCCCeEEECCCcCCCCCcccccCC
Confidence            999999999999899999999999999999999999

ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].

>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function

Probab=99.97  E-value=2e-31  Score=205.09  Aligned_cols=107  Identities=28%  Similarity=0.453  Sum_probs=95.0

Q ss_pred             ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCC------CcCCCCccCCcceeeeeecCC-CCccEEEEEEEcC
Q 037204           22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLD------DPSTDAFESCSSDTFEIRGPC-AYQICYVYLYRTG   94 (160)
Q Consensus        22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld------~~~~~~FErgs~DtF~v~g~c-lg~ic~l~L~~dg   94 (160)
                      |.|+|+|+||++++|||||+|+|+|+|.+|++.....++      ++.++.||||++|+|.|..++ +|+||+|+|||||
T Consensus         1 ~~Y~I~V~TG~~~gAGTdanV~i~l~G~~G~s~~~~l~~~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~l~~irI~HDn   80 (129)
T cd01754           1 CVYTIYVQTGSIWKAGTDSRISLQIYDADGPGLRIANLEAWGGLMGAGHDYFERGNLDRFSGRGPCLPSPPCWMNLTSDG   80 (129)
T ss_pred             CEEEEEEEECCCcccCCcceEEEEEEeCCCCcccEEcccccccccccccccccCCCccEEEEEeccCCCCeEEEEEEECC
Confidence            899999999999999999999999999999985544333      356899999999999998887 7999999999999


Q ss_pred             C---CCceeeEEEEecC-C---CCeEEEEeceecCCCC-cee
Q 037204           95 P---DGWKPESVKIYGA-N---SRAVSFYYNTFIPSDI-WYG  128 (160)
Q Consensus        95 ~---dgW~~e~V~V~~~-~---~~~~~F~~n~WL~~~~-~yg  128 (160)
                      +   ++|||++|+|.+. .   .+++.|+|||||+.|. +|.
T Consensus        81 ~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~~~~  122 (129)
T cd01754          81 TGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDESPYM  122 (129)
T ss_pred             CCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCCcce
Confidence            9   9999999999975 2   3589999999999988 664

Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.

>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase

Probab=99.96  E-value=2.3e-28  Score=183.13  Aligned_cols=103  Identities=22%  Similarity=0.285  Sum_probs=94.4

Q ss_pred             eEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecC-CCCccEEEEEEEcCC---CCc
Q 037204           23 SYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGP-CAYQICYVYLYRTGP---DGW   98 (160)
Q Consensus        23 ~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~-clg~ic~l~L~~dg~---dgW   98 (160)
                      .|+|+|+||.+..|||+|+|+|.|.|++|++ ....|+++..+ ||||++|+|.+..+ ++|+|++|+|+||++   ++|
T Consensus         2 ~Y~V~V~Tg~~~~AGT~a~V~i~l~G~~g~S-~~~~L~~~~~~-FerG~~d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W   79 (113)
T cd01753           2 EYKVTVATGSSLFAGTDDYIYLTLVGTAGES-EKQLLDRPGYD-FERGAVDEYKVKVPEDLGELLLVRLRKRKYLLFDAW   79 (113)
T ss_pred             EEEEEEEECCCcCCccccEEEEEEEECCCcc-cCEEcCCCCCc-cCCCCeeEEEEecccCCCCcEEEEEEECCCCCCCCe
Confidence            6999999999999999999999999999987 67788887765 99999999999865 599999999999998   999


Q ss_pred             eeeEEEEecCCCCeEEEEeceecCCCCce
Q 037204           99 KPESVKIYGANSRAVSFYYNTFIPSDIWY  127 (160)
Q Consensus        99 ~~e~V~V~~~~~~~~~F~~n~WL~~~~~y  127 (160)
                      ||++|+|.++.++.+.|+||+||+.+.-+
T Consensus        80 ~l~~V~V~~~~~~~~~F~c~rWl~~~~~~  108 (113)
T cd01753          80 FCNYITVTGPGGDEYHFPCYRWIEGYGTL  108 (113)
T ss_pred             eecEEEEEcCCCCEEEEEhHHeECCCCEE
Confidence            99999999877888999999999988743

As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.

>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain

Probab=99.95  E-value=6.7e-28  Score=177.56  Aligned_cols=109  Identities=35%  Similarity=0.515  Sum_probs=97.1

Q ss_pred             ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecC-CCCccEEEEEEEcCC---CC
Q 037204           22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGP-CAYQICYVYLYRTGP---DG   97 (160)
Q Consensus        22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~-clg~ic~l~L~~dg~---dg   97 (160)
                      |.|+|+|+||+..+|||+++|+|.|+|++|++.....++++..  ||||++|+|.+..+ ++|+|+.|+|+||++   ++
T Consensus         1 ~~Y~v~V~Tg~~~~agT~~~v~i~l~g~~g~s~~~~l~~~~~~--f~~g~~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~   78 (116)
T cd00113           1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIPILDGPGS--FERGSTDTFQIDLKLDIGDITKVYLRRDGSGLSDG   78 (116)
T ss_pred             CEEEEEEEECCCCCCCccCEEEEEEEeCCCCcccEEccCCCCc--ccCCCceEEEEeccCCCcCeEEEEEEECCCCCCCC
Confidence            7899999999999999999999999999999965554444433  99999999999887 599999999999999   69


Q ss_pred             ceeeEEEEecC-CCCeEEEEeceecCCCCceecccC
Q 037204           98 WKPESVKIYGA-NSRAVSFYYNTFIPSDIWYGFNLC  132 (160)
Q Consensus        98 W~~e~V~V~~~-~~~~~~F~~n~WL~~~~~yg~n~C  132 (160)
                      |||++|+|++. +.+.+.|+|++||+.+.+|..++|
T Consensus        79 W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~  114 (116)
T cd00113          79 WYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRS  114 (116)
T ss_pred             EEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceee
Confidence            99999999976 568999999999999998877665

It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.

>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function

Probab=99.95  E-value=3.9e-27  Score=176.89  Aligned_cols=103  Identities=17%  Similarity=0.262  Sum_probs=96.0

Q ss_pred             eEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCc-CCCCccCCcceeeeeecCCCCccEEEEEEEcCC---CCc
Q 037204           23 SYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDP-STDAFESCSSDTFEIRGPCAYQICYVYLYRTGP---DGW   98 (160)
Q Consensus        23 ~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~-~~~~FErgs~DtF~v~g~clg~ic~l~L~~dg~---dgW   98 (160)
                      .|+|+|+||...+|||+|+|+|.|+|.+|++ ....|+++ ..+.||||++|+|.+..+.+|+|+.|+|+||++   ++|
T Consensus         2 ~Y~v~v~TG~~~~AGT~a~V~i~L~G~~g~s-~~~~L~~~~~~~~FerGs~d~F~i~~~~lG~l~~i~i~~d~~g~~~~W   80 (120)
T cd01756           2 TYEVTVKTGDVKGAGTDANVFITLYGENGDT-GKRKLKKSNNKNKFERGQTDKFTVEAVDLGKLKKIRIGHDNSGLGAGW   80 (120)
T ss_pred             EEEEEEEECCCcCCCCCcEEEEEEEeCCCcc-ccEEccCCCcCCcccCCCeEEEEEEecCCCCeEEEEEEECCCCCCCCc
Confidence            6999999999999999999999999999987 77889887 778999999999999878899999999999999   899


Q ss_pred             eeeEEEEecC-CCCeEEEEeceecCCCCc
Q 037204           99 KPESVKIYGA-NSRAVSFYYNTFIPSDIW  126 (160)
Q Consensus        99 ~~e~V~V~~~-~~~~~~F~~n~WL~~~~~  126 (160)
                      ||++|+|.+. +++.+.|+|++||+.+..
T Consensus        81 ~~~~V~V~~~~~~~~~~F~~~~Wl~~~~~  109 (120)
T cd01756          81 FLDKVEIREPGTGDEYTFPCNRWLDKDED  109 (120)
T ss_pred             EEeEEEEEECCCceEEEEEeCCccCCCCC
Confidence            9999999976 678899999999998763

In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.

>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins

Probab=99.95  E-value=4.5e-27  Score=176.74  Aligned_cols=103  Identities=20%  Similarity=0.301  Sum_probs=95.2

Q ss_pred             ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecC-CCCccEEEEEEEcCC---CC
Q 037204           22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGP-CAYQICYVYLYRTGP---DG   97 (160)
Q Consensus        22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~-clg~ic~l~L~~dg~---dg   97 (160)
                      ..|+|+|+||...+|||+|+|+|.|+|.+|++ ....|.++.++.||||++|+|.+..+ .+|+|+.|+||||++   ++
T Consensus         1 ~~Y~v~v~Tg~~~gAGT~a~V~i~L~G~~g~s-~~~~L~~~~~~~F~rG~~~~f~i~~~~dlG~l~~i~l~hd~~g~~~~   79 (120)
T cd01752           1 YLYLVTVFTGWRRGAGTTAKVTITLYGAEGES-EPHHLRDPEKPIFERGSVDSFLLTTPFPLGELQSIRLWHDNSGLSPS   79 (120)
T ss_pred             CEEEEEEEECCCCCCCcccEEEEEEEeCCCCc-ccEEcCCCCccceeCCCeeEEEecCccCCCCccEEEEEECCCCCCCC
Confidence            36999999999999999999999999999987 66788888889999999999999865 599999999999998   99


Q ss_pred             ceeeEEEEecC-CCCeEEEEeceecCCCC
Q 037204           98 WKPESVKIYGA-NSRAVSFYYNTFIPSDI  125 (160)
Q Consensus        98 W~~e~V~V~~~-~~~~~~F~~n~WL~~~~  125 (160)
                      |||++|+|.+. +++...|+|++||+.+.
T Consensus        80 W~l~~V~V~~~~t~~~~~F~~~rWl~~~~  108 (120)
T cd01752          80 WYLSRVIVRDLQTGKKWFFLCNDWLSVEE  108 (120)
T ss_pred             eEEEEEEEEECCCCcEEEEEeCcEECCcC
Confidence            99999999976 67889999999999875

Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.

>cd02899 PLAT_SR Scavenger receptor protein

Probab=99.93  E-value=2.9e-25  Score=166.60  Aligned_cols=97  Identities=21%  Similarity=0.266  Sum_probs=88.8

Q ss_pred             eEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCCCCccEEEEEEEcCC-CCceee
Q 037204           23 SYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGP-DGWKPE  101 (160)
Q Consensus        23 ~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~clg~ic~l~L~~dg~-dgW~~e  101 (160)
                      .|+|+|+||...+|||+++|+|.|.|..|.+ ....|++    .||||++|+|.+++.+||+|-.|+|.+++. |+|||+
T Consensus         2 ~Y~I~V~TG~~~~AGT~~~V~i~L~G~~g~S-~~~~L~~----~F~~G~~d~F~v~~~dLG~l~~i~l~n~g~~~~Wf~~   76 (109)
T cd02899           2 TYTASVQTGKDKEAGTNGTIEITLLGSSGRS-NPKTLSQ----GFYPGSLKRIRFRAADVGDINAIILSNTALNDPWYCD   76 (109)
T ss_pred             eEEEEEEECCCCCCCccceEEEEEEECCCCc-CCEEccC----ccCCCceEEEEECccccCceEEEEEECCCCCCCceee
Confidence            5999999999999999999999999999987 6667764    599999999999988899999999987777 999999


Q ss_pred             EEEEecCCCCeEEEEeceecCCC
Q 037204          102 SVKIYGANSRAVSFYYNTFIPSD  124 (160)
Q Consensus       102 ~V~V~~~~~~~~~F~~n~WL~~~  124 (160)
                      +|+|.++.++.+.|+|||||+..
T Consensus        77 ~V~V~~~~g~~~~Fpc~rWla~~   99 (109)
T cd02899          77 YVRIKSEDGKVFAFNVKRWIGYP   99 (109)
T ss_pred             EEEEECCCCCEEEEEcceeeCCc
Confidence            99999987788999999999864

A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.

>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain

Probab=99.91  E-value=2.2e-23  Score=151.29  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=86.9

Q ss_pred             eEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecC-CCCccEEEEEEEcC-CCCcee
Q 037204           23 SYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGP-CAYQICYVYLYRTG-PDGWKP  100 (160)
Q Consensus        23 ~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~-clg~ic~l~L~~dg-~dgW~~  100 (160)
                      .|+|+|+||.+..|||+|+|+|.|.|..|++ ....+....+..||||++|+|.+..+ .+|+|..|+|+||+ .++|||
T Consensus         2 ~Y~v~V~Tg~~~~aGT~~~V~l~L~g~~~~s-~~~~~~~~~~~~f~~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l   80 (105)
T smart00308        2 KYKVTVTTGGLDFAGTTASVSLSLVGAEGDG-KESKLDYLFKGIFARGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFL   80 (105)
T ss_pred             EEEEEEEECCccCCCccceEEEEEEeCCCCC-cceeccccCCccccCCceEEEEEecccCCCCcEEEEEEeCCCCCCeEE
Confidence            6999999999999999999999999999753 33344333445699999999999776 49999999999999 599999


Q ss_pred             eEEEEecC-CCCeEEEEeceecCC
Q 037204          101 ESVKIYGA-NSRAVSFYYNTFIPS  123 (160)
Q Consensus       101 e~V~V~~~-~~~~~~F~~n~WL~~  123 (160)
                      ++|+|.+. +.+...|+||+||..
T Consensus        81 ~~V~V~~~~~~~~~~F~c~~Wl~~  104 (105)
T smart00308       81 KSITVKDLPTGGKYHFPCNSWVYP  104 (105)
T ss_pred             EEEEEEECCCCCEEEEEcCceeCC
Confidence            99999975 778999999999975

>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family

Probab=99.89  E-value=1.2e-22  Score=153.65  Aligned_cols=95  Identities=13%  Similarity=0.142  Sum_probs=83.8

Q ss_pred             eEEEEEEcCCC-CCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCCCCccEEEEEEEcCC---CCc
Q 037204           23 SYTVVITTSCS-SSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGP---DGW   98 (160)
Q Consensus        23 ~Y~V~IkTg~~-~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~clg~ic~l~L~~dg~---dgW   98 (160)
                      .|+|+|+||.. ++|||+|+|+|.|+|..|++ ....|+++   .|      .|.+....||++.+|+|||||+   ++|
T Consensus         2 ~Y~VtV~TG~~~~gAGT~anV~i~L~G~~g~s-~~~~L~~~---~f------~~~v~~~~LG~L~~irIwHDnsG~~~~W   71 (114)
T cd01757           2 PYHVVIVPSKKLGGSMFTANPWICVSGELGET-PPLQIPKN---SL------EMTFDCQNLGKLTTVQIGHDNSGLLAKW   71 (114)
T ss_pred             eEEEEEEeCCCCCCCCCcceEEEEEEEcCCCc-CCEEecCC---ce------EEEEecCCcCCcEEEEEEECCCCCCCCe
Confidence            59999999999 59999999999999999976 77788643   33      4777678899999999999999   999


Q ss_pred             eeeEEEEec-CCCCeEEEEeceecCCCCce
Q 037204           99 KPESVKIYG-ANSRAVSFYYNTFIPSDIWY  127 (160)
Q Consensus        99 ~~e~V~V~~-~~~~~~~F~~n~WL~~~~~y  127 (160)
                      ||++|+|.+ .+++.+.|+|||||+.+..=
T Consensus        72 fl~~V~V~d~~t~~~~~FpC~rWLa~~~~D  101 (114)
T cd01757          72 LVEYVMVRNEITGHTYKFPCGRWLGEGVDD  101 (114)
T ss_pred             eeeEEEEEeCCCCCEEEEecCceecCCCCc
Confidence            999999998 47889999999999987743

PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.

>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1

Probab=99.85  E-value=9.9e-22  Score=142.54  Aligned_cols=101  Identities=26%  Similarity=0.335  Sum_probs=87.0

Q ss_pred             EEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeec-CCCCccEEEEEEEcCC---CCce
Q 037204           24 YTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRG-PCAYQICYVYLYRTGP---DGWK   99 (160)
Q Consensus        24 Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g-~clg~ic~l~L~~dg~---dgW~   99 (160)
                      |+|+|+||....|||+++|+|.|+|.+|++... .|.++....+  |++|+|.+.. ..+|+|..|+|+|++.   ++||
T Consensus         1 Y~v~v~Tg~~~~aGT~~~V~i~l~G~~g~s~~~-~l~~~~~~~~--g~~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~   77 (113)
T PF01477_consen    1 YRVTVKTGDERGAGTDANVYITLYGSKGKSGEI-ELLDPSGFNF--GSTDTFTIETPEDLGEIQKIRIWHDGSGPSPSWY   77 (113)
T ss_dssp             EEEEEEEESSTEEEESSEEEEEEEETTEEEEEE-EEEEEEETST--TEEEEEEEEESSCGCSEEEEEEEEESSSSSSEEE
T ss_pred             CEEEEEECCCCCCCcCCeEEEEEEECCCCcceE-EEeeeeeccc--CceEEeeeeecccCCCCcEEEEEEccCCCccceE
Confidence            999999999999999999999999999998444 4444332333  9999999976 5699999999999976   9999


Q ss_pred             eeEEEEecC-CCCeEEEEeceecCCCCce
Q 037204          100 PESVKIYGA-NSRAVSFYYNTFIPSDIWY  127 (160)
Q Consensus       100 ~e~V~V~~~-~~~~~~F~~n~WL~~~~~y  127 (160)
                      |++|+|... +++.+.|+||+||..+..|
T Consensus        78 l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~  106 (113)
T PF01477_consen   78 LDSVVVTDGETGRTYTFPCNRWLDPDKDY  106 (113)
T ss_dssp             EEEEEEEETTTSEEEEEEEEEEESTTEGC
T ss_pred             EEEEEEEeCCCCcEEEEEcCCEECCCCCC
Confidence            999999974 7899999999999987644

13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....

>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain

Probab=99.56  E-value=3.5e-14  Score=107.27  Aligned_cols=90  Identities=9%  Similarity=0.077  Sum_probs=78.7

Q ss_pred             ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEEEEEcCC-----
Q 037204           22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVYLYRTGP-----   95 (160)
Q Consensus        22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~L~~dg~-----   95 (160)
                      +.|.|+|.||....|||+++|+|+|+|..|++ ....|.++   .||+|++++|.+ +..++|++.+|++|||++     
T Consensus         1 ~hY~vtV~~~~~~~agt~~~v~v~L~G~~g~s-~~~~l~~~---~~~~g~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~   76 (120)
T cd01755           1 WHYQVKVHLSGKKNLEVDGTFTVSLYGTKGET-EQLPIVLG---ELKPNKTYSFLIDTEVDIGDLLKVKFKWENNVINSN   76 (120)
T ss_pred             CEEEEEEEEeCccccCcCccEEEEEEcCCCCc-ccEEEeCC---cccCCCEEEEEEEcCCCccceEEEEEEEcCCCcccc
Confidence            57999999999999999999999999999998 66677544   489999999999 688899999999999988     


Q ss_pred             -----CCceeeEEEEecC-CCCeEEE
Q 037204           96 -----DGWKPESVKIYGA-NSRAVSF  115 (160)
Q Consensus        96 -----dgW~~e~V~V~~~-~~~~~~F  115 (160)
                           ++|++++|+|.+. +.++..|
T Consensus        77 ~~~~~p~~~~~~I~Vq~get~~~~~F  102 (120)
T cd01755          77 SGETLPKLGARKIRVKSGETQKKFTF  102 (120)
T ss_pred             cccCCCcEEEEEEEEEECCCCCEEEE
Confidence                 3899999999966 5555555

This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.

>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL)

Probab=99.33  E-value=1.5e-11  Score=95.61  Aligned_cols=75  Identities=15%  Similarity=0.247  Sum_probs=66.4

Q ss_pred             ceEEEEEEcCCCCCCC-CcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEEE-EEcCC---
Q 037204           22 CSYTVVITTSCSSSKY-TRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVYL-YRTGP---   95 (160)
Q Consensus        22 C~Y~V~IkTg~~~~AG-Tda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~L-~~dg~---   95 (160)
                      +.|.|+|.|+....|| |+++|+|+|+|..|++ ....|.++  ..+|+|++++|.+ +..++|++.+|++ |||+.   
T Consensus         1 yhYqVtV~~~~~~~~~~t~~~v~i~L~G~~g~S-~~~~l~~~--~~~~~G~t~sfLi~t~~dlG~L~~vk~~W~~n~~~~   77 (137)
T cd01758           1 FHYQLKIHFFNQTNRIETDPTFTISLYGTLGES-ENLPLTLP--EGITGNKTNSFLITTEKDIGDLLMLKLKWEGSSLWS   77 (137)
T ss_pred             CeEEEEEEEecccCCCcccceEEEEEEcCCCcc-cCEEEecC--cccCCCCeEEEEEECCCCcCCEEEEEEEEeCCCCCC
Confidence            5899999999999998 9999999999999998 66677654  3569999999999 6888999999999 99988   


Q ss_pred             CCce
Q 037204           96 DGWK   99 (160)
Q Consensus        96 dgW~   99 (160)
                      +.|+
T Consensus        78 ~sW~   81 (137)
T cd01758          78 NSWW   81 (137)
T ss_pred             hhhh
Confidence            6775

LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.

>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase

Probab=97.60  E-value=0.00091  Score=50.64  Aligned_cols=87  Identities=13%  Similarity=0.115  Sum_probs=67.7

Q ss_pred             eEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEEEEEcCC------
Q 037204           23 SYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVYLYRTGP------   95 (160)
Q Consensus        23 ~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~L~~dg~------   95 (160)
                      +|.|+|.-+....  ++..+.|+|+|..|++ .-..+.   .+.||.|++-+|.+ +...+|++-.|.++.++.      
T Consensus         2 ~Yqv~V~~s~~~~--~~g~~~vsL~G~~g~s-~~~~i~---~g~l~pg~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~   75 (113)
T cd01759           2 RYKVSVTLSGKKK--VTGTILVSLYGNKGNT-RQYEIF---KGTLKPGNTYSAFIDVDVDVGPLTKVKFIWNNNVINITL   75 (113)
T ss_pred             eEEEEEEEecccc--cCceEEEEEEcCCCCc-cceEEE---eeeecCCCEEEEEEEccCCCCCEEEEEEEEeCCccCCCC
Confidence            6999998877654  8899999999999998 333342   34699999999999 677799999999999887      


Q ss_pred             CCceeeEEEEecC-CCCeEEE
Q 037204           96 DGWKPESVKIYGA-NSRAVSF  115 (160)
Q Consensus        96 dgW~~e~V~V~~~-~~~~~~F  115 (160)
                      +.=+.++|.|... +.+...|
T Consensus        76 p~~~~~~I~Vq~Ge~~~~~~F   96 (113)
T cd01759          76 PKVGAEKITVQSGKDGKVFNF   96 (113)
T ss_pred             CeEEEEEEEEEeCCCccEEEE
Confidence            2233789999855 4444444

Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.

>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]

Probab=97.15  E-value=0.00055  Score=66.94  Aligned_cols=95  Identities=16%  Similarity=0.145  Sum_probs=75.4

Q ss_pred             CCCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCCCCccEEEEEEEcCC---
Q 037204           19 LGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGP---   95 (160)
Q Consensus        19 ~~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~clg~ic~l~L~~dg~---   95 (160)
                      .-.-.|.|.|.||  ++.||.++|-|..-|.-+.. ...-| .|+.-        -|...-.=||-+.-|+|=||++   
T Consensus       971 ttk~~Y~vvIv~~--~g~~~~~~iWi~vsGsl~eT-~~i~~-~~n~~--------~f~F~~kNLG~LtT~rIGHdnS~~~ 1038 (1295)
T KOG2080|consen  971 KTKMDYQVVIVTG--SGRGAIPAIWVTVEGSLCST-PPIML-KPNTP--------LFKFDHKNLGILSTLRIGHQQSEKP 1038 (1295)
T ss_pred             ccccceEEEEEeC--CCCcccCceEEEEecccCCC-Cceee-CCCCc--------eeEEeccccceeeeEEecccCCCcc
Confidence            3455799999999  88999999999999999776 33333 12222        2333333389999999999999   


Q ss_pred             CCceeeEEEEecC-CCCeEEEEeceecCCCC
Q 037204           96 DGWKPESVKIYGA-NSRAVSFYYNTFIPSDI  125 (160)
Q Consensus        96 dgW~~e~V~V~~~-~~~~~~F~~n~WL~~~~  125 (160)
                      .-|++|+|.|.+. ++.++.|||.+|+.+++
T Consensus      1039 ~kW~vEyV~vRNEiTG~TYKFPCGrw~G~ge 1069 (1295)
T KOG2080|consen 1039 VQWFLEYVLVRNEITGQTYKFPCGRWFGNGE 1069 (1295)
T ss_pred             hHHHHHHhhhhceeccceeccccccccCCcc
Confidence            7999999999976 89999999999999876

>TIGR03230 lipo_lipase lipoprotein lipase

Probab=96.45  E-value=0.028  Score=51.43  Aligned_cols=93  Identities=15%  Similarity=0.143  Sum_probs=71.8

Q ss_pred             CCCceEEEEEEcCCCCC-CCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEEEEEcCC-
Q 037204           19 LGSCSYTVVITTSCSSS-KYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVYLYRTGP-   95 (160)
Q Consensus        19 ~~~C~Y~V~IkTg~~~~-AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~L~~dg~-   95 (160)
                      -....|.|+|..+.... .+++..+.|+|++..|++ .-..+.   ...||.|++-+|.+ +...+|++-.|.+..++. 
T Consensus       306 f~~~~y~v~v~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~---~~~~~~~~t~~~~i~~~~~~g~~~~v~~~w~~~~  381 (442)
T TIGR03230       306 YKVFHYQVKVHFFGKTSLSHTDQPMKISLYGTHGEK-ENIPFT---LPEVSTNKTYSFLITTDVDIGELLMVKLKWEKDT  381 (442)
T ss_pred             ceEEEEEEEEEEeccccccccCCcEEEEEEcCCCCc-cceEEe---eeeecCCCeEEEEEecccCCCceEEEEEEEeCCC
Confidence            33567999999887644 478999999999999997 222332   34699999999999 677799999999999988 


Q ss_pred             -CCce---------eeEEEEecC-CCCeEEE
Q 037204           96 -DGWK---------PESVKIYGA-NSRAVSF  115 (160)
Q Consensus        96 -dgW~---------~e~V~V~~~-~~~~~~F  115 (160)
                       ..|.         .++|+|... +.+...|
T Consensus       382 ~~~~~~~~~~~~~~~~~i~v~~ge~~~~~~f  412 (442)
T TIGR03230       382 YISWSDWWSSPGFHIRKLRIKSGETQSKVIF  412 (442)
T ss_pred             cccchhhhcCCceeEEEEEEEeCCCccEEEE
Confidence             3776         688999855 4444554

Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
3vf1_A	698	11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik	5e-05

>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Length = 698

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 22  CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPC 81
             Y + + T       T   +SI      G +  A  LD    + FES  +DT++  G  
Sbjct: 20  MKYKITVETGDLRGAGTDASVSIKLTGKDGAETSAFSLDKYFHNDFESGGTDTYDQSGVD 79

Query: 82  AYQICYVYLYRTG---PDGWKPESVKIY 106
             +I  + L   G      W    V I 
Sbjct: 80  VGEIAMITLKENGFGLKSDWYIAKVIIE 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
3vf1_A	698	11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik	99.93
3v98_A	691	Arachidonate 5-lipoxygenase; dioxygenase, oxidored	99.9
3dy5_A	1066	Allene oxide synthase-lipoxygenase protein; fusion	99.88
1lox_A	662	15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot	99.87
3fg1_A	696	Allene oxide synthase-lipoxygenase protein; arichi	99.87
3cwz_B	384	RAB6IP1, RAB6-interacting protein 1; RAB small GTP	99.86
2wxu_A	370	Phospholipase C; cytolysis, hydrolase, hemolysis,	99.77
1olp_A	370	Alpha-toxin; zinc phospholipase C, GAS gangrene de	99.75
1bu8_A	452	Protein (pancreatic lipase related protein 2); hyd	99.02
1rp1_A	450	Pancreatic lipase related protein 1; hydrolase, li	99.0
1hpl_A	449	Lipase; hydrolase(carboxylic esterase); 2.30A {Equ	98.94
1gpl_A	432	RP2 lipase; serine esterase, hydrolase, lipid degr	98.89
1w52_X	452	Pancreatic lipase related protein 2; detergent, cl	98.77
2iuj_A	853	Lipoxygenase L-5; dioxygenase, metal-binding, oxid	94.15

>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa}

Probab=99.93  E-value=4.2e-26  Score=212.75  Aligned_cols=108  Identities=21%  Similarity=0.249  Sum_probs=99.4

Q ss_pred             cCCCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCCCCccEEEEEEEcCC--
Q 037204           18 NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGP--   95 (160)
Q Consensus        18 ~~~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~clg~ic~l~L~~dg~--   95 (160)
                      ..++|.|+|+|+||++.+|||||+|+|.|+|.+|+++....|+++++++||||++|+|.++..|+|+||.|+|+|||+  
T Consensus        16 ~~~~~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~~S~~~~L~~~~~~~FeRGs~D~F~v~~~~LG~L~~IrI~hDnsG~   95 (698)
T 3vf1_A           16 HHHHMKYKITVETGDLRGAGTDASVSIKLTGKDGAETSAFSLDKYFHNDFESGGTDTYDQSGVDVGEIAMITLKENGFGL   95 (698)
T ss_dssp             ---CEEEEEEEEECSCCCSCSBCCEEEEEEETTSCBCCCEEECCBCSSSSCCCCEEEEEEEECCCSSEEEEEEEECCCSS
T ss_pred             CCCcceEEEEEEECCCCCCCCCceeEEEEEECCCCeecceEeCCCCCCccccCCeeEEEEEecccCCceEEEEEECCCCC
Confidence            357999999999999999999999999999999995588899999999999999999999889999999999999998  


Q ss_pred             -CCceeeEEEEecCC-----CCeEEEEeceecCCCC
Q 037204           96 -DGWKPESVKIYGAN-----SRAVSFYYNTFIPSDI  125 (160)
Q Consensus        96 -dgW~~e~V~V~~~~-----~~~~~F~~n~WL~~~~  125 (160)
                       ++|||++|+|++..     ++.+.|+|++||+.|.
T Consensus        96 ~~~Wfl~~V~V~~~~t~~~~g~~~~Fpc~rWL~~d~  131 (698)
T 3vf1_A           96 KSDWYIAKVIIEKIDEATGFSNKYIFPCYRWVIKQL  131 (698)
T ss_dssp             BCCCEEEEEEEEEECTTTCCEEEEEEEEEEECSSEE
T ss_pred             CCCeEEeEEEEEcCCCCCCCCcEEEEEhhhcccCCc
Confidence             99999999999763     6889999999999984

>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B

Probab=99.90  E-value=1.2e-23  Score=196.12  Aligned_cols=104  Identities=20%  Similarity=0.265  Sum_probs=93.0

Q ss_pred             cCCCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCC-CCccEEEEEEEcCC-
Q 037204           18 NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPC-AYQICYVYLYRTGP-   95 (160)
Q Consensus        18 ~~~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~c-lg~ic~l~L~~dg~-   95 (160)
                      ..+.|.|+|+|+||.+.+|||+|+|+|.|.|.+|++ ....|++   ++||||++|+|.++.++ +|+||.|+|||||+ 
T Consensus        18 ~~~~~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~S-~~~~L~~---~~FeRG~~D~F~v~~~~~LG~L~~IrI~hDnsG   93 (691)
T 3v98_A           18 GSHMPSYTVTVATGSQEHAGTDDYIYLSLVGSAGCS-EKHLLDK---GSFERGAVDSYDVTVDEELGEIQLVRIEKRKYG   93 (691)
T ss_dssp             -----CEEEEEEECCSTTCCBCSEEEEEEEESSCBC-CCEECCS---SCBCTTCEEEEEECCSSCCCSEEEEEEEEECSS
T ss_pred             CCCceeEEEEEEECCCCCCCCCceeEEEEEECCCce-eeEEecC---CcccCCCeeEEEEEeccCCCCceEEEEEECCCC
Confidence            467999999999999999999999999999999997 6678976   89999999999998855 99999999999999 


Q ss_pred             --CCceeeEEEEecCCCCeEEEEeceecCCCC
Q 037204           96 --DGWKPESVKIYGANSRAVSFYYNTFIPSDI  125 (160)
Q Consensus        96 --dgW~~e~V~V~~~~~~~~~F~~n~WL~~~~  125 (160)
                        ++|||++|+|.++.++...|+|++||+.|.
T Consensus        94 ~~~~Wfl~~V~V~~~~g~~~~Fpc~rWL~~d~  125 (691)
T 3v98_A           94 SNDDWYLKYITLKTPHGDYIEFPCYRWITGDV  125 (691)
T ss_dssp             SCCCEEEEEEEEECTTSCEEEEEEEEEECSSS
T ss_pred             CCCCeEEeEEEEECCCCcEEEEehHHhcCCCC
Confidence              999999999998778899999999999985

>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla}

Probab=99.88  E-value=5.5e-23  Score=198.77  Aligned_cols=106  Identities=23%  Similarity=0.259  Sum_probs=91.2

Q ss_pred             CCCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCCCCccEEEEEEEcCC---
Q 037204           19 LGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGP---   95 (160)
Q Consensus        19 ~~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~clg~ic~l~L~~dg~---   95 (160)
                      ...|.|+|+|+||++.+|||+|+|+|.|.|.+|++ ....|+++++++||||++|+|.++..++|+||.|+|||||+   
T Consensus       371 ~~~~~Y~V~V~TG~~~~AGTda~V~i~L~G~~G~S-~~~~L~~~~~~~FeRGs~d~F~v~~~~LG~L~~IrI~hDnsG~~  449 (1066)
T 3dy5_A          371 GQNAIYNVEVETGDREHAGTDATITIRITGAKGRT-DYLKLDKWFHNDFEAGSKEQYTVQGFDVGDIQLIELHSDGGGYW  449 (1066)
T ss_dssp             --CCEEEEEEEECCSTTCCCCSCCEEEEEESSCBC-CCEEC-------CCTTCEEEEEEECSCCSSEEEEEEECCCCC--
T ss_pred             cCceeEEEEEEECCCCCCCCCceeEEEEEECCCce-eeEEeCCCCcCccccCCcceEEEEEecCCCceEEEEEECCCCCC
Confidence            45799999999999999999999999999999997 77899999999999999999999887799999999999996   


Q ss_pred             ---CCceeeEEEEecC-CCCeEEEEeceecCCCC
Q 037204           96 ---DGWKPESVKIYGA-NSRAVSFYYNTFIPSDI  125 (160)
Q Consensus        96 ---dgW~~e~V~V~~~-~~~~~~F~~n~WL~~~~  125 (160)
                         ++|||++|+|++. +++.+.|+|++||+.|.
T Consensus       450 ~~~~~Wfl~~V~V~~~~tg~~~~Fpc~rWL~~d~  483 (1066)
T 3dy5_A          450 SGDPDWFVNRVIIISSTQDRVYSFPCFRWVIKDM  483 (1066)
T ss_dssp             CCCCCEEEEEEEEEESSSSSCEEEEEEEEESSEE
T ss_pred             CCCCCeEEeEEEEEeCCCCCEEEEehhhhccCCe
Confidence               5999999999987 58899999999999884

>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A*

Probab=99.87  E-value=3.2e-22  Score=185.74  Aligned_cols=96  Identities=13%  Similarity=0.147  Sum_probs=88.1

Q ss_pred             eEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCC-CCccEEEEEEEcCC---CCc
Q 037204           23 SYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPC-AYQICYVYLYRTGP---DGW   98 (160)
Q Consensus        23 ~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~c-lg~ic~l~L~~dg~---dgW   98 (160)
                      .|+|+|+||++.+|||||+|+|+|+|++|++.. ..|+     +||||++|+|.+..++ +|+||.|+|+||++   ++|
T Consensus         2 ~Y~V~V~TG~~~~AGTda~V~i~L~G~~G~s~~-~~L~-----~FerG~~d~F~v~~~~dlG~l~~I~I~~d~~g~~~~W   75 (662)
T 1lox_A            2 VYRVCVSTGASIYAGSKNKVELWLVGQHGEVEL-GSCL-----RPTRNKEEEFKVNVSKYLGSLLFVRLRKKHFLKEDAW   75 (662)
T ss_dssp             EEEEEEEECCSTTCCCSSEEEEEEEESSCEEEE-EEEE-----CCCTTCEEEEEEECSSCCCSEEEEEEEEECSSSCCCE
T ss_pred             eEEEEEEECCCcCCCcCCcEEEEEEECCCCccC-eeCC-----CcCCCCccEEEEEecCCCCcceEEEEEeCCCCCCCCc
Confidence            599999999999999999999999999999844 5585     8999999999998866 89999999999999   999


Q ss_pred             eeeEEEEecCC--CCeEEEEeceecCCC
Q 037204           99 KPESVKIYGAN--SRAVSFYYNTFIPSD  124 (160)
Q Consensus        99 ~~e~V~V~~~~--~~~~~F~~n~WL~~~  124 (160)
                      ||++|+|.+++  +..+.|+||+||+.+
T Consensus        76 fl~~V~V~~p~~~g~~~~F~Cn~WL~~~  103 (662)
T 1lox_A           76 FCNWISVQALGAAEDKYWFPCYRWVVGD  103 (662)
T ss_dssp             EEEEEEEEESSSCCCCEEEEEEEEECSS
T ss_pred             EEeEEEEecCCCCCcEEEEEeceEecCC
Confidence            99999999875  566999999999973

>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A

Probab=99.87  E-value=3e-22  Score=186.77  Aligned_cols=102  Identities=24%  Similarity=0.303  Sum_probs=93.9

Q ss_pred             CCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCCCCccEEEEEEEcCC----
Q 037204           20 GSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGP----   95 (160)
Q Consensus        20 ~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~clg~ic~l~L~~dg~----   95 (160)
                      +.-.|.|+|+||++.+|||+|+|+|.|.|.+|.+ ....|++   ++||||++|+|.++..++|+||.|+|||||+    
T Consensus         5 ~~~~~~~~V~TG~~~~AGTda~V~I~L~G~~G~S-~~~~L~~---~~FeRGs~d~F~v~~~dLG~L~~IrI~hDnsg~G~   80 (696)
T 3fg1_A            5 HHAIYNVEVETGDREHAGTDATITIRITGAKGRT-DYLKLDK---GSFEAGSKEQYTVQGFDVGDIQLIELHSDGGGYWS   80 (696)
T ss_dssp             CEEEEEEEEEECSSTTCCBCSCEEEEEEETTEEC-CCEEECS---SCBCTTCEEEEEEEEECCSSEEEEEEEECCCCTTC
T ss_pred             ccceeeEEEEeCCCCCCCCCceeEEEEEECCCce-eeEEeCC---CCcCCCCccEEEEEEccCCCceEEEEEECCcCCCC
Confidence            3557999999999999999999999999999997 6778976   8999999999999887799999999999997    


Q ss_pred             --CCceeeEEEEecC-CCCeEEEEeceecCCCC
Q 037204           96 --DGWKPESVKIYGA-NSRAVSFYYNTFIPSDI  125 (160)
Q Consensus        96 --dgW~~e~V~V~~~-~~~~~~F~~n~WL~~~~  125 (160)
                        ++|||++|+|.++ +++...|+|++||+.|.
T Consensus        81 ~~~~Wf~~~V~V~~~~tg~~~~Fpc~rWL~~dl  113 (696)
T 3fg1_A           81 GDPDWFVNRVIIISSTQDRVYSFPCFRWVIKDM  113 (696)
T ss_dssp             SCCCEEEEEEEEEETTCSSCEEEEEEEEESSEE
T ss_pred             CCCCeEeeEEEEEeCCCCcEEEeEhhhhccCCe
Confidence              7999999999987 58899999999999884

>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}

Probab=99.86  E-value=2.6e-21  Score=170.16  Aligned_cols=100  Identities=10%  Similarity=0.076  Sum_probs=89.7

Q ss_pred             cCCCceEEEEEEcCCCCC-CCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCCCCccEEEEEEEcCC-
Q 037204           18 NLGSCSYTVVITTSCSSS-KYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGP-   95 (160)
Q Consensus        18 ~~~~C~Y~V~IkTg~~~~-AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~clg~ic~l~L~~dg~-   95 (160)
                      ....|.|+|+|+||.+.+ |||+|+|+|.|+|.+|.+ ....|+++         .|.|.+...|||++++|+|||||+ 
T Consensus       244 Ttt~~~Y~V~V~TG~~~gaAGT~anV~I~L~G~~G~S-~~~~L~~~---------~d~F~v~~~~LG~L~~I~I~HDnsG  313 (384)
T 3cwz_B          244 TTILIPYHILIVPSKKLGGSMFTANPWICISGELGET-QILQIPRN---------VLEMTFECQNLGKLTTVQIGHDNSG  313 (384)
T ss_dssp             TTSEEEEEEEEEECCCCCSCCCCSCEEEEEEESSCBC-CCEECCTT---------CCEEEEEEECCCSEEEEEEEECCCS
T ss_pred             cccceeEEEEEEeCCCCCCCCCCCcEEEEEEeCCCCc-ccEEeccc---------CceEEEecccCCCceEEEEEECCCC
Confidence            356799999999999998 799999999999999997 66678653         689999999999999999999999 


Q ss_pred             --CCceeeEEEEecC-CCCeEEEEeceecCCCCce
Q 037204           96 --DGWKPESVKIYGA-NSRAVSFYYNTFIPSDIWY  127 (160)
Q Consensus        96 --dgW~~e~V~V~~~-~~~~~~F~~n~WL~~~~~y  127 (160)
                        ++|||++|+|.+. +++.+.|+|++||+.|..-
T Consensus       314 ~~p~Wfl~~V~V~d~~tg~~~~Fpc~rWL~~d~~D  348 (384)
T 3cwz_B          314 LYAKWLVECVMVRNEVTGHTYKFPCGRWLGKGMDD  348 (384)
T ss_dssp             SCCCEEEEEEEEEETTTCCEEEEEEEEEESTTSTT
T ss_pred             CCCceeEeEEEEEeCCCCcEEEEECceeCCCCCCC
Confidence              9999999999987 6789999999999977643

>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A

Probab=99.77  E-value=2.6e-18  Score=150.51  Aligned_cols=102  Identities=22%  Similarity=0.275  Sum_probs=91.7

Q ss_pred             ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeec---CC-CCccEEEEEEEcCC--
Q 037204           22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRG---PC-AYQICYVYLYRTGP--   95 (160)
Q Consensus        22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g---~c-lg~ic~l~L~~dg~--   95 (160)
                      =.|.|+|+||....|||+++|+|.|.+..|++... .||++ .++||||++|+|.|.-   +. +|+|..|+|.+...  
T Consensus       256 ~~y~V~V~Tg~~~~AGT~~~V~~~lvg~~Ges~~~-~LD~~-gndFe~G~~d~y~v~~~~~~~~lg~l~~v~l~K~~~~~  333 (370)
T 2wxu_A          256 KELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEW-EMDNP-GNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTA  333 (370)
T ss_dssp             CEEEEEEEECCSTTCSCCSEEEEEEEETTCCEEEE-ECCCS-SCTTCTTCEEEEEEECSCTTCCGGGEEEEEEEEECSSS
T ss_pred             eeEEEEEEcCCcccCCCcceEEEEEEcCCCccchh-hhhCc-CCCcCCCCeeeEEEecCCCccCcCceEEEEEEccCCCC
Confidence            46999999999999999999999999999998565 48885 5999999999999954   44 89999999999877  


Q ss_pred             --CCceeeEEEEecCCCCeEEEEeceecCCCC
Q 037204           96 --DGWKPESVKIYGANSRAVSFYYNTFIPSDI  125 (160)
Q Consensus        96 --dgW~~e~V~V~~~~~~~~~F~~n~WL~~~~  125 (160)
                        |+|||++|+|..+.+....|||++||..+.
T Consensus       334 ~~D~Wfc~~i~V~~p~~~~~~FP~y~Wi~g~~  365 (370)
T 2wxu_A          334 FPDAYKPENIKIIANGKVVVDKDINEWISGNS  365 (370)
T ss_dssp             SCCCBCEEEEEEEETTEEEEEEECCSCBCTTC
T ss_pred             CCccceeeeEEEEcCCCcEEEeccceeeeCCe
Confidence              999999999999877889999999998665

>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3

Probab=99.75  E-value=6.3e-18  Score=148.13  Aligned_cols=103  Identities=20%  Similarity=0.269  Sum_probs=92.0

Q ss_pred             CceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeec----CCCCccEEEEEEEcCC-
Q 037204           21 SCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRG----PCAYQICYVYLYRTGP-   95 (160)
Q Consensus        21 ~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g----~clg~ic~l~L~~dg~-   95 (160)
                      -=.|.|+|+||....|||+++|+|.|.|..|++... .||++ .++||||++|+|.|.-    .-+|+|..|+|.+... 
T Consensus       255 ~n~y~V~V~Tg~~~~AGT~~~V~~~lvg~~Ges~~~-~LD~~-gndFe~G~~d~y~v~~~~~~~dlg~l~~v~l~K~~~~  332 (370)
T 1olp_A          255 LNEIVVMIKTADVQDAGTDNYIYFGIETKDGVKEEW-ALDNP-GNDFTRNQEGTYTLKLKNKNTKYSDIKNMWIRDEKLT  332 (370)
T ss_dssp             CSEEEEEEEECSSTTCCCCSEEEEEEEETTCCEEEE-ECCCS-SCCSCTTCEEEEEEECSCSSCCGGGEEEEEEEEECSS
T ss_pred             cceEEEEEEcCCcccCCCcceEEEEEEcCCCccchh-hhhCc-CCccCCCCeeEEEEeccCCcCCcCceEEEEEEcCCCC
Confidence            346999999999999999999999999999999565 58885 5999999999999955    4489999999998887 


Q ss_pred             ---CCceeeEEEEecCCCCeEEEEeceecCCCC
Q 037204           96 ---DGWKPESVKIYGANSRAVSFYYNTFIPSDI  125 (160)
Q Consensus        96 ---dgW~~e~V~V~~~~~~~~~F~~n~WL~~~~  125 (160)
                         |+|||++|+|..+.+....|||++||..+.
T Consensus       333 ~~~D~Wfc~~i~V~~p~~~~~~FP~y~Wi~g~~  365 (370)
T 1olp_A          333 VATDGWKPSYVKVIAGDKVRLEKNINEWISGGT  365 (370)
T ss_dssp             SSCCEECEEEEEEEETTEEEEEEECCSCEETTE
T ss_pred             CCCccceeeeEEEEcCCCcEEEeccceeeeCce
Confidence               999999999999887889999999997654

>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*

Probab=99.02  E-value=1e-09  Score=96.73  Aligned_cols=109  Identities=16%  Similarity=0.178  Sum_probs=89.0

Q ss_pred             cCCCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEE-EEEcCC
Q 037204           18 NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVY-LYRTGP   95 (160)
Q Consensus        18 ~~~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~-L~~dg~   95 (160)
                      +-....|.|+|+|+.  .++|+++|.|+|+|.+|++ ....|.++   .||+|++++|.+ .+..+|+|.+|+ +|+++.
T Consensus       336 Pf~~~~Y~v~V~~~~--~~~t~g~i~v~L~G~~g~s-~~~~l~~~---~~~~g~~~s~li~~~~dlG~l~~v~~~W~~~~  409 (452)
T 1bu8_A          336 NFTRWRYKVSVTLSG--AKKLSGYILVALYGNNGNS-KQYEIFKG---SLKPEARHVRDIDVDINVGEIQKVKFLWNNKV  409 (452)
T ss_dssp             TCCCEEEEEEEEEEC--SSCEEEEEEEEEEETTEEC-CCEEEEEE---EECTTCEEEEEEEESSCCCSEEEEEEEEEC--
T ss_pred             CCcceeeEEEEEEcC--CCceeeEEEEEEEcCCCCc-ceEEeccc---ccCCCCEEEEEEeCCCCCCCceEEEEEEECCC
Confidence            445778999999965  5799999999999999987 44556443   599999999999 688899999999 888875


Q ss_pred             -----CCceeeEEEEecC-CCCeEEEEeceecCCCCceecccC
Q 037204           96 -----DGWKPESVKIYGA-NSRAVSFYYNTFIPSDIWYGFNLC  132 (160)
Q Consensus        96 -----dgW~~e~V~V~~~-~~~~~~F~~n~WL~~~~~yg~n~C  132 (160)
                           +.|+.++|+|.+. +.++..|=.++|+-.++--.+.-|
T Consensus       410 ~~~~~p~~~i~~I~V~~~e~~~~~~FC~~~~~~~~~~~~~~~~  452 (452)
T 1bu8_A          410 INLFRPTLGASQITVQSGVDGKEYNFCSSDTVREDVLQSLYPC  452 (452)
T ss_dssp             ----CCCBEEEEEEEEETTTCCEEEEECCCCBCTTCCEEEEEC
T ss_pred             CCCCCCeEEEEEEEEEeCCCCCeEEecCCCccccCceecccCC
Confidence                 7999999999965 677899999999998775444333

>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A

Probab=99.00  E-value=1e-09  Score=97.15  Aligned_cols=108  Identities=19%  Similarity=0.174  Sum_probs=89.5

Q ss_pred             cCCCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEE-EEEcCC
Q 037204           18 NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVY-LYRTGP   95 (160)
Q Consensus        18 ~~~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~-L~~dg~   95 (160)
                      +-..+.|.|+|+|+.   ++|+++|.|+|+|.+|++ ....|.++   .||+|++++|.+ .+..+|+|.+|+ +|+++.
T Consensus       335 Pf~~~~Y~VtV~~~~---~~t~g~i~v~L~G~~g~s-~~~~l~~~---~~~~g~t~s~li~~~~dlG~l~~v~~~W~~~~  407 (450)
T 1rp1_A          335 NFARWRYGVSITLSG---KRATGQAKVALFGSKGNT-HQFNIFKG---ILKPGSTHSNEFDAKLDVGTIEKVKFLWNNNV  407 (450)
T ss_dssp             CCCCEEEEEEEEEEE---SCEEEEEEEEEEETTEEC-CCEEEEEE---EECTTCEEEEEEEESSCCSSEEEEEEEEEEC-
T ss_pred             CcccceeEEEEEEcC---CceeEEEEEEEEcCCCCc-ceEEeccc---ccCCCCEEEEEEECCCCCCCceEEEEEEECCC
Confidence            445778999999987   899999999999999987 44556443   699999999999 677899999999 788764


Q ss_pred             -----CCceeeEEEEecC-CCCeEEEEeceecCCCCceecccC
Q 037204           96 -----DGWKPESVKIYGA-NSRAVSFYYNTFIPSDIWYGFNLC  132 (160)
Q Consensus        96 -----dgW~~e~V~V~~~-~~~~~~F~~n~WL~~~~~yg~n~C  132 (160)
                           +.|+.++|+|... +.++..|=.++|+-+++--.+.-|
T Consensus       408 ~~~~~p~~~i~~I~V~~~e~~~~~~FC~~~~~~~~~~~~~~~~  450 (450)
T 1rp1_A          408 VNPTFPKVGAAKITVQKGEEKTVHSFCSESTVREDVLLTLTPC  450 (450)
T ss_dssp             -CTTCCCEEEEEEEEEETTCSSCEEEECSCEECTTCCEEEEEC
T ss_pred             CCCCCCeEEEEEEEEEeCCCCCeEEecCCCccccCceecccCC
Confidence                 7999999999965 667789999999998775444433

>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19

Probab=98.94  E-value=2.3e-09  Score=94.86  Aligned_cols=98  Identities=12%  Similarity=0.071  Sum_probs=82.1

Q ss_pred             cCCCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEE-EEEcCC
Q 037204           18 NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVY-LYRTGP   95 (160)
Q Consensus        18 ~~~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~-L~~dg~   95 (160)
                      +-..+.|.|+|+|+.   ++|+++|.|+|+|.+|++ ....|.++   .||+|++++|.+ .+..+|+|.+|+ +|+++.
T Consensus       335 Pf~~~~Y~VtV~~~~---~~t~g~i~v~L~G~~g~s-~~~~l~~~---~~~~g~~~s~li~~~~dlG~l~~v~~~W~~~~  407 (449)
T 1hpl_A          335 NFARWRYRVDVTLSG---KKVTGHVLVSLFGNKGNS-RQYEIFQG---TLKPDNTYSNEFDSDVEVGDLEKVKFIWYNNV  407 (449)
T ss_dssp             SCCCEEEEEEEEEEE---CCEEEEEEEEEEETTEEC-CCEEEEEE---EECSSCEEEEEEEESSCCCSEEEEEEEEEECS
T ss_pred             CcccceeEEEEEEcC---CceeEEEEEEEEcCCCCc-eeEEeccc---ccCCCcEEEEEEeCCCCCCCceEEEEEEECCC
Confidence            445778999999987   899999999999999987 44566443   699999999999 688899999999 788764


Q ss_pred             -----CCceeeEEEEecCCCCeEEEEeceecCC
Q 037204           96 -----DGWKPESVKIYGANSRAVSFYYNTFIPS  123 (160)
Q Consensus        96 -----dgW~~e~V~V~~~~~~~~~F~~n~WL~~  123 (160)
                           +.|+.++|+|.+ ...+..+-|++|+-.
T Consensus       408 ~~~~~p~~~i~~I~V~~-e~~~~~~fC~~~~~~  439 (449)
T 1hpl_A          408 INLTLPKVGASKITVER-NDGSVFNFCSEETVR  439 (449)
T ss_dssp             CCTTCCCEEEEEEEEEC-TTSCEEEEECCCCBC
T ss_pred             CCCCCCeEEEEEEEEEe-CCCCeeeecCCCccc
Confidence                 799999999999 655445449998764

>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A

Probab=98.89  E-value=4.2e-09  Score=91.77  Aligned_cols=100  Identities=12%  Similarity=0.105  Sum_probs=81.9

Q ss_pred             cCCCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEE-EEEcCC
Q 037204           18 NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVY-LYRTGP   95 (160)
Q Consensus        18 ~~~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~-L~~dg~   95 (160)
                      +-....|.|+|+|+.   ++|+++|.|+|+|.+|++ ....|.++   .||+|++++|.+ .+..+|+|.+|+ +|+++.
T Consensus       318 pf~~~~Y~v~v~~~~---~~~~g~i~v~L~G~~g~s-~~~~l~~~---~~~~g~~~s~li~~~~~lG~l~~v~~~W~~~~  390 (432)
T 1gpl_A          318 NFTRWRYKVSVTLSG---KKVTGHILVSLFGNKGNS-KQYEIFKG---TLKPDSTHSNEFDSDVDVGDLQMVKFIWYNNV  390 (432)
T ss_dssp             TCCCEEEEEEEEEEE---CCEEEEEEEEEEESSCEE-EEEEEEEE---EECTTCEEEEEEEESSCCCSEEEEEEEEEESS
T ss_pred             CCccceeEEEEEEcC---CceeEEEEEEEEcCCCCc-eeEEeccc---ccCCCcEEEEEEeCCCCCCCceEEEEEEEcCC
Confidence            445778999999987   899999999999999998 44566543   599999999999 688899999999 888865


Q ss_pred             -----CCceeeEEEEecCCCCeEEEEece-ecCCCC
Q 037204           96 -----DGWKPESVKIYGANSRAVSFYYNT-FIPSDI  125 (160)
Q Consensus        96 -----dgW~~e~V~V~~~~~~~~~F~~n~-WL~~~~  125 (160)
                           +.|+.++|+|.+....+ .|-|.+ .+-+++
T Consensus       391 ~~~~~~~~~i~~I~v~~~e~~~-~~fC~~~~~~~~~  425 (432)
T 1gpl_A          391 INPTLPRVGASKIIVETNVGKQ-FNFCSPETVREEV  425 (432)
T ss_dssp             CCTTCCEEEEEEEEEECTTSCE-EEEECSCCEETTC
T ss_pred             CCCCCCeEEEEEEEEEeCCCCC-ceecCCCccccCc
Confidence                 79999999999875555 777765 443443

>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus}

Probab=98.77  E-value=8.8e-10  Score=97.12  Aligned_cols=107  Identities=13%  Similarity=0.127  Sum_probs=89.4

Q ss_pred             cCCCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEE-EEEcCC
Q 037204           18 NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVY-LYRTGP   95 (160)
Q Consensus        18 ~~~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~-L~~dg~   95 (160)
                      +-..+.|.|+|+|+.  .++|+++|.|+|+|.+|++ ....|.++   .||+|++++|.+ .+..+|+|.+|+ +|+++.
T Consensus       336 Pf~~~~Y~v~v~~~~--~~~t~g~i~v~L~G~~g~s-~~~~l~~~---~~~~g~~~s~li~~~~dlG~l~~v~~~W~~~~  409 (452)
T 1w52_X          336 DYTSWRYRVSITLAG--SGKANGYLKVTLRGSNGNS-KQYEIFKG---SLQPDSSYTLDVDVNFIIGKIQEVKFVWNKTV  409 (452)
T ss_dssp             TCCCEEEEECCBCCS--SSCCEECBCCCBCCSSCCC-CCCCCCCE---ECCSSCCCCEEEEESSCCCCCCCBCCCBCCSS
T ss_pred             CccceeeEEEEEEcC--CcceeeEEEEEEEcCCCCc-ceEecccc---ccCCCCEEEEEEECCCCCCCceEEEEEEECCC
Confidence            445778999999985  5799999999999999998 55566554   699999999999 688899999999 788764


Q ss_pred             -----CCceeeEEEEecC-CCCeEEEEeceecCCCCceecc
Q 037204           96 -----DGWKPESVKIYGA-NSRAVSFYYNTFIPSDIWYGFN  130 (160)
Q Consensus        96 -----dgW~~e~V~V~~~-~~~~~~F~~n~WL~~~~~yg~n  130 (160)
                           +.|+.++|+|.+. +.++..|=+++|+-.++--.+.
T Consensus       410 ~~~~~~~~~i~~I~V~~~e~~~~~~fC~~~~~~~~~~~~~~  450 (452)
T 1w52_X          410 LNLSKPQLGASRITVQSGADGTEYKFCGSGTVQDNVEQSLY  450 (452)
T ss_dssp             CCSCCCCCCCSBCCCCBSSSCCCCCEECCSCCCSSCCCCCE
T ss_pred             CCCCCCeEEEEEEEEEeCCCCCeEEecCCCccccCceeccc
Confidence                 7999999999965 6677889999999977644433

>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max}

Probab=94.15  E-value=0.32  Score=46.66  Aligned_cols=83  Identities=16%  Similarity=0.124  Sum_probs=53.7

Q ss_pred             eEEEEEEeC----CCCe--eecccCCCcCCC-CccCCcceeeee--e-cCCCCccEEEEEEEcCCCCceeeEEEEec-CC
Q 037204           41 QISIAFGDA----YGNQ--IYAPRLDDPSTD-AFESCSSDTFEI--R-GPCAYQICYVYLYRTGPDGWKPESVKIYG-AN  109 (160)
Q Consensus        41 ~IsI~l~da----~Gn~--v~~~~Ld~~~~~-~FErgs~DtF~v--~-g~clg~ic~l~L~~dg~dgW~~e~V~V~~-~~  109 (160)
                      .|++.|..+    .|..  .....|++-.+. ..+.| ...|.+  . .+.+|.+-.+.|.....+.|||++|+|.+ +.
T Consensus        55 ~v~lqlvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~f~~~~~~G~~gav~v~n~~~~e~fl~~i~l~~~p~  133 (853)
T 2iuj_A           55 SISIQLISATKADGGKGKVGKATNLRGKITLPTIGAK-EEAYDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPN  133 (853)
T ss_dssp             SEEEEEEEEEEESSSSEEEEEEEECCCCCCCSSCCTT-EEEEEEEEECCSSSCCEEEEEEEECSSSCEEEEEEEECCCTT
T ss_pred             eEEEEEEEeeeCCCCCcccCCccccccccCCCCCCCC-ceEEEEEeeccccCCCceEEEEEecCCccceEeEEEEeecCC
Confidence            466666644    3332  123344432211 23333 446888  3 34489999999977666999999999987 44


Q ss_pred             CCeEEEEeceecCCC
Q 037204          110 SRAVSFYYNTFIPSD  124 (160)
Q Consensus       110 ~~~~~F~~n~WL~~~  124 (160)
                      ...+.|+||+||...
T Consensus       134 ~g~~~F~c~sWv~~~  148 (853)
T 2iuj_A          134 HGTIHFICNSWVYNS  148 (853)
T ss_dssp             SCCEEEEEEEEECBT
T ss_pred             CCcEEEEecccccCC
Confidence            134889999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1ca1a2	121	Alpha-toxin, C-terminal domain {Clostridium perfri	99.94
d1olpa2	121	Alpha-toxin, C-terminal domain {Clostridium absonu	99.93
d2p0ma2	111	15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T	99.93
d1rp1a1	113	Pancreatic lipase, C-terminal domain {Dog (Canis f	99.79
d1bu8a1	114	Pancreatic lipase, C-terminal domain {Rat (Rattus	99.78
d1gpla1	112	Pancreatic lipase, C-terminal domain {Guinea pig (	99.65

>d1ca1a2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Alpha-toxin, C-terminal domain
domain: Alpha-toxin, C-terminal domain
species: Clostridium perfringens, different strains [TaxId: 1502]

Probab=99.94  E-value=1.4e-26  Score=172.34  Aligned_cols=105  Identities=21%  Similarity=0.284  Sum_probs=94.4

Q ss_pred             ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCC----CCccEEEEEEEcCC--
Q 037204           22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPC----AYQICYVYLYRTGP--   95 (160)
Q Consensus        22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~c----lg~ic~l~L~~dg~--   95 (160)
                      =.|+|+|+||.+..|||+|+|+|.|.|.+|++ ....|+++. +.||||++|+|.+..++    +|+|+.|+|+||+.  
T Consensus         7 ~~~~v~V~TG~~~~AGTda~V~i~l~G~~G~s-~~~~L~~~~-~~Ferg~~d~F~v~~~d~~~~lG~i~ki~i~hd~~g~   84 (121)
T d1ca1a2           7 KELVAYISTSGEKDAGTDDYMYFGIKTKDGKT-QEWEMDNPG-NDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTA   84 (121)
T ss_dssp             CEEEEEEEECCSTTCCCCSEEEEEEEETTSCE-EEEECCCSS-SCSCTTCEEEEEEECSCSSCCGGGEEEEEEEEECSSS
T ss_pred             eeEEEEEEeCCCCCCCCCCeEEEEEEeCCCCe-eeEEecCCC-ccccCCcEEEEEEEeCCcCCCcCCceEEEEEEcCccc
Confidence            37999999999999999999999999999987 667898874 78999999999997654    89999999999987  


Q ss_pred             --CCceeeEEEEecCCCCeEEEEeceecCCCCcee
Q 037204           96 --DGWKPESVKIYGANSRAVSFYYNTFIPSDIWYG  128 (160)
Q Consensus        96 --dgW~~e~V~V~~~~~~~~~F~~n~WL~~~~~yg  128 (160)
                        ++|||++|+|...+++.+.|+||+||..+..|-
T Consensus        85 ~~~~W~l~~V~v~~~~~~~~~F~~nrWl~~~~~~~  119 (121)
T d1ca1a2          85 FPDAYKPENIKVIANGKVVVDKDINEWISGNSTYN  119 (121)
T ss_dssp             SCCCBCEEEEEEEETTEEEEEEECCSCBCSSCEEE
T ss_pred             cCchhheEEEEEECCCCeEEEeECCEEECCCCEEe
Confidence              579999999986677889999999999998663

>d1olpa2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium absonum [TaxId: 29369]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Alpha-toxin, C-terminal domain
domain: Alpha-toxin, C-terminal domain
species: Clostridium absonum [TaxId: 29369]

Probab=99.93  E-value=2.2e-26  Score=171.06  Aligned_cols=106  Identities=21%  Similarity=0.276  Sum_probs=93.9

Q ss_pred             CceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCC----CCccEEEEEEEcCC-
Q 037204           21 SCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPC----AYQICYVYLYRTGP-   95 (160)
Q Consensus        21 ~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~c----lg~ic~l~L~~dg~-   95 (160)
                      .=.|.|+|+||.+.+|||+|+|+|.|+|.+|++ ....|+++ .+.||||++|+|.+..+.    +|+|..|+|+||+. 
T Consensus         6 ~~~~~V~v~Tg~~~~AGT~a~V~i~l~G~~g~s-~~~~L~~~-~~~Ferg~~d~F~v~~~d~~~~lG~i~~i~i~hd~~g   83 (121)
T d1olpa2           6 LNEIVVMIKTADVQDAGTDNYIYFGIETKDGVK-EEWALDNP-GNDFTRNQEGTYTLKLKNKNTKYSDIKNMWIRDEKLT   83 (121)
T ss_dssp             CSEEEEEEEECSSTTCCCCSEEEEEEEETTCCE-EEEECCCS-SCCSCTTCEEEEEEECSCSSCCGGGEEEEEEEEECSS
T ss_pred             ccEEEEEEEECCCCCCCCcceEEEEEEECCCCc-ccEEecCC-CcccccCCeEEEEEEeCCccCCcCceEEEEEEEcCCC
Confidence            347999999999999999999999999999987 66679876 578999999999997553    89999999999975 


Q ss_pred             ---CCceeeEEEEecCCCCeEEEEeceecCCCCcee
Q 037204           96 ---DGWKPESVKIYGANSRAVSFYYNTFIPSDIWYG  128 (160)
Q Consensus        96 ---dgW~~e~V~V~~~~~~~~~F~~n~WL~~~~~yg  128 (160)
                         ++|||++|+|.....+.+.|+||+||..+..|-
T Consensus        84 ~~~~~W~l~~V~v~~~~~~~~~F~~nrWl~~~~~~~  119 (121)
T d1olpa2          84 VATDGWKPSYVKVIAGDKVRLEKNINEWISGGTTYT  119 (121)
T ss_dssp             SSCCEECEEEEEEEETTEEEEEEECCSCEETTEEEE
T ss_pred             CCCcceeEEEEEEECCCCeEEEEECCEEECCCcEEE
Confidence               569999999986667889999999999988764

>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Lipoxigenase N-terminal domain
domain: 15-Lipoxygenase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.93  E-value=8.1e-26  Score=165.04  Aligned_cols=97  Identities=12%  Similarity=0.132  Sum_probs=87.0

Q ss_pred             eEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecC-CCCccEEEEEEEcCC---CCc
Q 037204           23 SYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGP-CAYQICYVYLYRTGP---DGW   98 (160)
Q Consensus        23 ~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~-clg~ic~l~L~~dg~---dgW   98 (160)
                      .|+|+|+||..++|||+|+|+|.|+|.+|++ ....|+     .||||++|+|.+..+ .+|+|++|+|+||++   ++|
T Consensus         2 ~Y~I~v~TG~~~~AGT~a~V~i~l~G~~G~s-~~~~l~-----~f~rg~~d~F~~~~~~~lG~i~~i~i~~d~~g~~~~W   75 (111)
T d2p0ma2           2 VYRVCVSTGASIYAGSKNKVELWLVGQHGEV-ELGSCL-----RPTRNKEEEFKVNVSKYLGSLLFVRLRKKHFLKEDAW   75 (111)
T ss_dssp             EEEEEEEECSSSSCCCSSEEEEEEEESSCEE-EEEEEE-----CCCTTCEEEEEEECSSCCCSEEEEEEEEECSSSCCCE
T ss_pred             eEEEEEEECCCCCCCCCCeEEEEEEECCCCC-CCcCcc-----ccccCcEEEEEEEeeccccceEEEEEEECCCCCCCCe
Confidence            5999999999999999999999999999987 445563     499999999999876 599999999999998   899


Q ss_pred             eeeEEEEecC--CCCeEEEEeceecCCCC
Q 037204           99 KPESVKIYGA--NSRAVSFYYNTFIPSDI  125 (160)
Q Consensus        99 ~~e~V~V~~~--~~~~~~F~~n~WL~~~~  125 (160)
                      ||++|+|+++  +...+.|+|++||..|.
T Consensus        76 ~l~~V~V~~~~~~~~~~~Fpc~~Wl~~dg  104 (111)
T d2p0ma2          76 FCNWISVQALGAAEDKYWFPCYRWVVGDG  104 (111)
T ss_dssp             EEEEEEEEESSSSCCCEEEEEEEEECSSS
T ss_pred             EEEEEEEEecCCCCeEEEEEcCceECCCC
Confidence            9999999965  56789999999998764

>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Dog (Canis familiaris) [TaxId: 9615]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Colipase-binding domain
domain: Pancreatic lipase, C-terminal domain
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=99.79  E-value=9.3e-20  Score=133.19  Aligned_cols=104  Identities=17%  Similarity=0.171  Sum_probs=89.5

Q ss_pred             ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeee-cCCCCccEEEEEEEcCC---CC
Q 037204           22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIR-GPCAYQICYVYLYRTGP---DG   97 (160)
Q Consensus        22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~-g~clg~ic~l~L~~dg~---dg   97 (160)
                      ..|.|+|+||   +|||+|+|+|.|+|..|++ ....|.   .+.||||++|+|.+. +..+|+|-.|+|+||++   ++
T Consensus         2 ~rY~V~V~t~---gagT~a~v~i~L~G~~g~t-~~~~l~---~~~f~~g~~~~f~i~~~~~lG~l~~v~i~hdn~g~~~~   74 (113)
T d1rp1a1           2 WRYGVSITLS---GKRATGQAKVALFGSKGNT-HQFNIF---KGILKPGSTHSNEFDAKLDVGTIEKVKFLWNNNVVNPT   74 (113)
T ss_dssp             EEEEEEEEEE---ESCEEEEEEEEEEETTEEC-CCEEEE---EEEECTTCEEEEEEEESSCCSSEEEEEEEEEEC--CTT
T ss_pred             eEEEEEEEEC---CCCccceEEEEEEcCCCCc-ccEEEc---ceeEcCCCEEEEEEEeCCCCCCcEEEEEEECCCCCCCc
Confidence            4799999998   6899999999999999986 667774   357999999999996 56899999999999999   78


Q ss_pred             c---eeeEEEEecC-CCCeEEEEeceecCCCCceecccC
Q 037204           98 W---KPESVKIYGA-NSRAVSFYYNTFIPSDIWYGFNLC  132 (160)
Q Consensus        98 W---~~e~V~V~~~-~~~~~~F~~n~WL~~~~~yg~n~C  132 (160)
                      |   ++++|+|... +.+.+.|.+++|+..|+...-.-|
T Consensus        75 w~~~~v~~V~V~~~~~g~~~~Fc~~~~v~~~v~~~l~pc  113 (113)
T d1rp1a1          75 FPKVGAAKITVQKGEEKTVHSFCSESTVREDVLLTLTPC  113 (113)
T ss_dssp             CCCEEEEEEEEEETTCSSC-EEECSCEECTTCCEEEEEC
T ss_pred             cccceeEEEEEEcCCCCcEEEECcCceEccCceeccccC
Confidence            8   9999999966 788999999999999986554333

>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Colipase-binding domain
domain: Pancreatic lipase, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=3.3e-19  Score=130.08  Aligned_cols=102  Identities=14%  Similarity=0.104  Sum_probs=86.5

Q ss_pred             ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeec-CCCCccEEEEEEEcCC---CC
Q 037204           22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRG-PCAYQICYVYLYRTGP---DG   97 (160)
Q Consensus        22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g-~clg~ic~l~L~~dg~---dg   97 (160)
                      ..|+|+|+||..  +||+++|+|+|+|..|++ ....|.   ++.||||++|+|.+.. ..+|++-+|+|+||++   ++
T Consensus         2 ~rY~V~V~t~~~--~gT~~~V~i~L~G~~G~s-~~~~l~---~~~f~rG~~~~f~~~~~~~lG~l~~i~i~hdn~g~~~~   75 (114)
T d1bu8a1           2 WRYKVSVTLSGA--KKLSGYILVALYGNNGNS-KQYEIF---KGSLKPEARHVRDIDVDINVGEIQKVKFLWNNKVINLF   75 (114)
T ss_dssp             EEEEEEEEEECS--SCEEEEEEEEEEETTEEC-CCEEEE---EEEECTTCEEEEEEEESSCCCSEEEEEEEEEC------
T ss_pred             cEEEEEEEECCC--CCcCceEEEEEEeCCCCc-ccCccc---hhhccCCCceEEEEecCcCCCCcEEEEEEECCCcCCCc
Confidence            479999999875  599999999999999986 666774   3579999999999975 5899999999999998   78


Q ss_pred             c---eeeEEEEecC-CCCeEEEEeceecCCCCceec
Q 037204           98 W---KPESVKIYGA-NSRAVSFYYNTFIPSDIWYGF  129 (160)
Q Consensus        98 W---~~e~V~V~~~-~~~~~~F~~n~WL~~~~~yg~  129 (160)
                      |   ++++|+|... +++.+.|.+++|+..|+...-
T Consensus        76 W~~~~l~~V~V~~~~~g~~~~Fc~~~~v~~~~~~~l  111 (114)
T d1bu8a1          76 RPTLGASQITVQSGVDGKEYNFCSSDTVREDVLQSL  111 (114)
T ss_dssp             CCCBEEEEEEEEETTTCCEEEEECCCCBCTTCCEEE
T ss_pred             ccccceEEEEEEeCCCCCEEEEecCceEcCCceeec
Confidence            8   5999999976 678999999999999886543

>d1gpla1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Colipase-binding domain
domain: Pancreatic lipase, C-terminal domain
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.65  E-value=2.1e-16  Score=115.62  Aligned_cols=93  Identities=13%  Similarity=0.083  Sum_probs=80.7

Q ss_pred             ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeee-cCCCCccEEEEEEEcCC---CC
Q 037204           22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIR-GPCAYQICYVYLYRTGP---DG   97 (160)
Q Consensus        22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~-g~clg~ic~l~L~~dg~---dg   97 (160)
                      ..|.|+|+|+   ++||+++|+|.|+|..|++ ....|.+   +.||||++|+|.+. +..+|++.+|+++||++   ++
T Consensus         2 ~rY~V~V~t~---g~~T~~~V~i~L~G~~G~s-~~~~L~~---~~f~~g~t~tf~i~~~~~lG~l~~v~~~hdnsg~~~~   74 (112)
T d1gpla1           2 WRYKVSVTLS---GKKVTGHILVSLFGNKGNS-KQYEIFK---GTLKPDSTHSNEFDSDVDVGDLQMVKFIWYNNVINPT   74 (112)
T ss_dssp             EEEEEEEEEE---ECCEEEEEEEEEEESSCEE-EEEEEEE---EEECTTCEEEEEEEESSCCCSEEEEEEEEEESSCCTT
T ss_pred             cEEEEEEEEc---CCCccceEEEEEEECCCCc-ccEEEcC---ccccCCCEEEEEEEeCCCCCCcEEEEEEECCCCCCCC
Confidence            4799999996   5799999999999999987 6677744   36999999999995 56899999999999999   99


Q ss_pred             ce---eeEEEEecCCCCeEEEEeceecC
Q 037204           98 WK---PESVKIYGANSRAVSFYYNTFIP  122 (160)
Q Consensus        98 W~---~e~V~V~~~~~~~~~F~~n~WL~  122 (160)
                      |+   .++|+|.+..++.+.| |.++.-
T Consensus        75 w~~~~~~~I~V~~g~g~~~~F-C~~~~v  101 (112)
T d1gpla1          75 LPRVGASKIIVETNVGKQFNF-CSPETV  101 (112)
T ss_dssp             CCEEEEEEEEEECTTSCEEEE-ECSCCE
T ss_pred             cccccCEEEEEECCCCeEEEe-cCcccc
Confidence            99   8999999776677777 888764