Citrus Sinensis ID: 037205

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MKKCSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQVRIGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKLDMDIS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccEEccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHccccEEEEEcccccHHHHHHHHccccccccccEEEEEcccHHHHHHcccccEEEcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHcHHHHHccccEEEccccEEEccHHHHHHHHHHHcccccccccccccccccHHHHHHccccccccEEEEEEEcccccEEccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHHcccEEEEEEcccccHHHHHHHHccccccccccEEEEEEccHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHEEEEcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccEEEEccccEEEHHHHHHHHHHHHHHcccccccccEEEccHHHHHHHHHccccccEEEEEEEEcccccEEEEEcc
Coil and Loop (DISEMBL)
MKKCSLLIGLKLVLFHLTQKEHAQIVlpvfyrvdpsyvrnqtgsfgdSFSKLQERFEQNLEKLQTWRKGLREavglsgfhyrsirpeseLINEVVNHILKRLLEevfrprdnksqlVGVESRVEEIESLLSVeskdvyalgiwgiggigktTIARATFDKISRYLLATKLISNLlkdenaipgidlnFRRLSRMKVLIFFYDVTCFSQLESLmgsldwltpvSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSrhafkrnhpdvgyekLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYdgldnkeknIFLGVACFFQVRIGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIvsqesndpgnhnwlwhhEDIYEVLTYNTASNLLWIITLEYSSIYKLDMDIS
Flexible Loop (DISEMBL)
MKKCSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVglsgfhyrsirpeseLINEVVNHILKRLleevfrprdnksqlvgvesrVEEIESLlsveskdvyaLGIWGIGGIGKTTIARATFDKISRYLLATKLISnllkdenaipGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIIlttrnkqvlrnWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQVRIGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEyssiykldmdis
Low Complexity Region (SEG)
MKKCSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGvesrveeiesllsvesKDVYALgiwgiggigKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQVRIGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKLDMDIS
Disordered region (IsUnstruct)
***CSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQVRIGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVS******GNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKLD****
Disordered Region (DISOPRED)
*KKCSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQ*LEKLQTWRKGLREAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQVRIGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESND*GNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKLDMDI*
Disordered Region (DISEMBL)
MKKCSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQVRIGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKLDMDIS
Disordered Region (DISPRO)
****SLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQVRIGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKLDMDIS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKCSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQVRIGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKLDMDIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	439	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.913	0.350	0.364	3e-70
O23530	1301	Protein SUPPRESSOR OF npr	yes	no	0.940	0.317	0.324	4e-60
O82500	1095	Putative disease resistan	no	no	0.917	0.368	0.332	5e-59
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.888	0.205	0.328	5e-47
Q9FL92	1372	Probable WRKY transcripti	no	no	0.810	0.259	0.313	2e-45
Q9FH83	1288	Probable WRKY transcripti	no	no	0.678	0.231	0.345	3e-41
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.769	0.209	0.295	6e-37
P60838	894	Probable disease resistan	no	no	0.521	0.256	0.261	3e-09
Q8L3R3	885	Disease resistance protei	no	no	0.703	0.349	0.242	6e-09
O81825	919	Probable disease resistan	no	no	0.558	0.266	0.236	9e-09

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  266 bits (679), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 253/456 (55%), Gaps = 55/456 (12%)

Query: 24  QIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRS 83
           Q V+P+FY VDPS+VRNQ  SF  +F + + +++ ++E +Q WR  L EA  L G     
Sbjct: 99  QTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNR 158

Query: 84  IRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIW 143
            + +++ I ++V+ I  +L +       N   +VG+++ +E+IESLL +    V  +GIW
Sbjct: 159 DKTDADCIRQIVDQISSKLCKISLSYLQN---IVGIDTHLEKIESLLEIGINGVRIMGIW 215

Query: 144 GIGGIGKTTIARATFD------------------------KISRYLLATKLISNLLKDE- 178
           G+GG+GKTTIARA FD                        K   + L   L+S LL+++ 
Sbjct: 216 GMGGVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKENKRGMHSLQNALLSELLREKA 275

Query: 179 ---NAIPGIDLNFRRLSRMKVLIFFYDVTCFSQ-LESLMGSLDWLTPVSRIILTTRNKQV 234
              N   G      RL   KVLI   D+      LE L G LDW    SRII+TTR+K +
Sbjct: 276 NYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHL 335

Query: 235 LRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLG 294
           +    +  IYE+ AL  H +++LF +HAF +  P+  +EKLS  V+ Y +G+PLALKV G
Sbjct: 336 IEKNDI--IYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWG 393

Query: 295 CFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ------- 347
             L+      W+SAI  ++   Y  I++ LKISYDGL+ K++ +FL +ACF +       
Sbjct: 394 SLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYI 453

Query: 348 ------VRIGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGNHNW 401
                   IG   E G+ +L+DKSL+ IS  N++ MHDL+Q++G+ IV+ +  DPG  + 
Sbjct: 454 LQILESCHIG--AEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQK-DPGERSR 510

Query: 402 LWHHEDIYEVLTYNT---ASNLLWIITLEYSSIYKL 434
           LW  +++ EV++ NT   A   +W+ +  YSS  + 
Sbjct: 511 LWLAKEVEEVMSNNTGTMAMEAIWVSS--YSSTLRF 544

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  232 bits (592), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 241/456 (52%), Gaps = 43/456 (9%)

Query: 11  KLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGL 70
           +LV  H       Q+V+P+F+ VD S V+ QTG FG  F +  +   ++ EK Q+W++ L
Sbjct: 84  ELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVFEETCKAKSED-EK-QSWKQAL 141

Query: 71  REAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLL 130
                ++G+  R    E+ +I E+   +L++       P D+   LVG+E+ +E I+S+L
Sbjct: 142 AAVAVMAGYDLRKWPSEAAMIEELAEDVLRK----TMTPSDDFGDLVGIENHIEAIKSVL 197

Query: 131 SVESKDVYAL-GIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNF- 188
            +ESK+   + GIWG  GIGK+TI RA + K+S        I+      + + G+ L + 
Sbjct: 198 CLESKEARIMVGIWGQSGIGKSTIGRALYSKLSIQFHHRAFITYKSTSGSDVSGMKLRWE 257

Query: 189 ----------------------RRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRII 226
                                 +RL + KVLI   DV     L++L+G  +W    SRII
Sbjct: 258 KELLSEILGQKDIKIEHFGVVEQRLKQQKVLILLDDVDSLEFLKTLVGKAEWFGSGSRII 317

Query: 227 LTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV 286
           + T+++Q+L+   +  IYE+E    H AL +  R AF ++ P   +++L+  V K    +
Sbjct: 318 VITQDRQLLKAHEIDLIYEVEFPSEHLALTMLCRSAFGKDSPPDDFKELAFEVAKLAGNL 377

Query: 287 PLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFF 346
           PL L VLG  L  R KE W   + +L+  L   I++ L++SYD L  K++++FL +AC F
Sbjct: 378 PLGLSVLGSSLKGRTKEWWMEMMPRLRNGLNGDIMKTLRVSYDRLHQKDQDMFLYIACLF 437

Query: 347 QVRIGFNLE---------IGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQES-NDP 396
               GF +          +G ++L +KSLI I+ +  I MH+LL++LGR+I   +S  +P
Sbjct: 438 N---GFEVSYVKDLLKDNVGFTMLTEKSLIRITPDGYIEMHNLLEKLGREIDRAKSKGNP 494

Query: 397 GNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIY 432
           G   +L + EDI+EV+T  T +  L  I L +   +
Sbjct: 495 GKRRFLTNFEDIHEVVTEKTGTETLLGIRLPFEEYF 530

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  229 bits (583), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 244/460 (53%), Gaps = 57/460 (12%)

Query: 18  TQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLS 77
            ++E    V+PVFY+VDPS +R QTG FG SF  L+    +  E+   WR+ L +A  + 
Sbjct: 91  CKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSF--LETCCGKTEERQHNWRRALTDAANIL 148

Query: 78  GFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDV 137
           G H ++   E+  I  +   +L++L      P  + + LVG+E+ + ++ESLL +ES+ V
Sbjct: 149 GDHPQNWDNEAYKITTISKDVLEKL---NATPSRDFNDLVGMEAHIAKMESLLCLESQGV 205

Query: 138 YALGIWGIGGIGKTTIARATFDK------ISRYL--------------------LATKLI 171
             +GIWG  G+GKTTIARA +++      +S ++                    L  + +
Sbjct: 206 RIVGIWGPAGVGKTTIARALYNQYHENFNLSIFMENVRESYGEAGLDDYGLKLHLQQRFL 265

Query: 172 SNLLKDENAIPGIDLNFR-------RLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSR 224
           S LL  +      DL  R       RL   KVLI   DV    QL++L     W    SR
Sbjct: 266 SKLLDQK------DLRVRHLGAIEERLKSQKVLIILDDVDNIEQLKALAKENQWFGNKSR 319

Query: 225 IILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQ 284
           I++TT+NKQ+L +  ++ +Y++       AL +F +HAFK++ P    + L+        
Sbjct: 320 IVVTTQNKQLLVSHDINHMYQVAYPSKQEALTIFCQHAFKQSSPSDDLKHLAIEFTTLAG 379

Query: 285 GVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVAC 344
            +PLAL+VLG F+  + KE WE ++  L+  L   + +VLK+ YDGL + EK++FL +AC
Sbjct: 380 HLPLALRVLGSFMRGKGKEEWEFSLPTLKSRLDGEVEKVLKVGYDGLHDHEKDLFLHIAC 439

Query: 345 FF---------QVRIGFN---LEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQE 392
            F         Q+ I  N   +  G+ VL DKSLI    N +I MH LL++LG+++V ++
Sbjct: 440 IFSGQHENYLKQMIIANNDTYVSFGLQVLADKSLIQKFENGRIEMHSLLRQLGKEVVRKQ 499

Query: 393 S-NDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSI 431
           S  +PG   +L + ++   VL+ NT +  +  I+L+   I
Sbjct: 500 SIYEPGKRQFLMNAKETCGVLSNNTGTGTVLGISLDMCEI 539

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  189 bits (479), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 230/456 (50%), Gaps = 66/456 (14%)

Query: 14   LFHLTQKEHAQ--IVLPVFYRVDP-SYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGL 70
            L ++ + +H +  +V P+FYR+ P  +V N         SK  ERF    E  + W+  L
Sbjct: 728  LLNILEHQHTEDRVVYPIFYRLSPYDFVCN---------SKNYERFYLQDEP-KKWQAAL 777

Query: 71   REAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLL 130
            +E   + G+   + + ESELI+E+V   LK L         +K  ++G++ +VEEI SLL
Sbjct: 778  KEITQMPGYTL-TDKSESELIDEIVRDALKVLCSA------DKVNMIGMDMQVEEILSLL 830

Query: 131  SVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKD----------EN- 179
             +ES DV ++GIWG  GIGKTTIA   F KIS       ++ +L K+          EN 
Sbjct: 831  CIESLDVRSIGIWGTVGIGKTTIAEEIFRKISVQYETCVVLKDLHKEVEVKGHDAVRENF 890

Query: 180  ------------AIPGIDLNF--RRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRI 225
                         I  I  +F   RL R ++L+   DV  +  +++ +G+L++  P SRI
Sbjct: 891  LSEVLEVEPHVIRISDIKTSFLRSRLQRKRILVILDDVNDYRDVDTFLGTLNYFGPGSRI 950

Query: 226  ILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRN-HPDVGYEKLSSNVMKYVQ 284
            I+T+RN++V     +  +YE++ L+   +L L  R   +    P+V Y+ LS  ++K+  
Sbjct: 951  IMTSRNRRVFVLCKIDHVYEVKPLDIPKSLLLLDRGTCQIVLSPEV-YKTLSLELVKFSN 1009

Query: 285  GVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVAC 344
            G P  L+ L      RE       +     I  P I E    S  GLD+ E+ IFL +AC
Sbjct: 1010 GNPQVLQFLSSI--DREWNKLSQEVKTTSPIYIPGIFEK---SCCGLDDNERGIFLDIAC 1064

Query: 345  FFQVRI------------GFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQE 392
            FF  RI            GF+  +G   LVDKSL+ IS +N + M   +Q  GR+IV QE
Sbjct: 1065 FFN-RIDKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHNLVDMLSFIQATGREIVRQE 1123

Query: 393  SND-PGNHNWLWHHEDIYEVLTYNTASNLLWIITLE 427
            S D PG+ + LW+ + I  V   +T ++ +  I L+
Sbjct: 1124 SADRPGDRSRLWNADYIRHVFINDTGTSAIEGIFLD 1159

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  184 bits (466), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 209/427 (48%), Gaps = 71/427 (16%)

Query: 11  KLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGL 70
           KLV     QK   Q+V+PV Y V  S                             W   L
Sbjct: 72  KLVKVLDCQKNKDQVVVPVLYGVRSSETE--------------------------WLSAL 105

Query: 71  REAVGLSGFHY-RSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESL 129
            ++ G S  H+ R    +S+L+ E V  + ++L            + +G+ S++ EIE +
Sbjct: 106 -DSKGFSSVHHSRKECSDSQLVKETVRDVYEKLF---------YMERIGIYSKLLEIEKM 155

Query: 130 LSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK------------- 176
           ++ +  D+  +GIWG+ GIGKTT+A+A FD++S    A   I +  K             
Sbjct: 156 INKQPLDIRCVGIWGMPGIGKTTLAKAVFDQMSGEFDAHCFIEDYTKAIQEKGVYCLLEE 215

Query: 177 ---DENA-----IPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILT 228
               ENA     +  + L   RL+  +VL+   DV     +ES +G  DW  P S II+T
Sbjct: 216 QFLKENAGASGTVTKLSLLRDRLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLIIIT 275

Query: 229 TRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL 288
           +++K V R   V++IYE++ L    AL+LFS  A   +  +    ++S  V+KY  G PL
Sbjct: 276 SKDKSVFRLCRVNQIYEVQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPL 335

Query: 289 ALKVLGC-FLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ 347
           AL + G   + K+     E A  KL+       ++ +K SYD L+++EKNIFL +ACFFQ
Sbjct: 336 ALNLYGRELMGKKRPPEMEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQ 395

Query: 348 VR-----------IGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDP 396
                         GF   +G+ VLV+KSL+ IS  N++ MH+L+Q++GR I+++E+   
Sbjct: 396 GENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTIS-ENRVRMHNLIQDVGRQIINRETRQT 454

Query: 397 GNHNWLW 403
              + LW
Sbjct: 455 KRRSRLW 461

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  170 bits (430), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 176/330 (53%), Gaps = 32/330 (9%)

Query: 117 VGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISN--- 173
           +G+ S++ EIE++++ +   +  +GIWG+ GIGKTT+A+A FD++S    A+  I +   
Sbjct: 152 IGIYSKLLEIENMVNKQPIGIRCVGIWGMPGIGKTTLAKAVFDQMSSAFDASCFIEDYDK 211

Query: 174 --------LLKDENAIPGIDLNFRRLSRMK-------VLIFFYDVTCFSQLESLMGSLDW 218
                    L +E  +PG D    +LS ++       VL+   DV      ES +   DW
Sbjct: 212 SIHEKGLYCLLEEQLLPGNDATIMKLSSLRDRLNSKRVLVVLDDVRNALVGESFLEGFDW 271

Query: 219 LTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHA-FKRNHPDVGYEKLSS 277
           L P S II+T+R+KQV    G+++IYE++ L    A +LF   A  K +  +   ++LS 
Sbjct: 272 LGPGSLIIITSRDKQVFCLCGINQIYEVQGLNEKEARQLFLLSASIKEDMGEQNLQELSV 331

Query: 278 NVMKYVQGVPLALKVLGCFLYKREK-EVWESAINKLQRILYPSILEVLKISYDGLDNKEK 336
            V+ Y  G PLA+ V G  L  ++K    E+A  KL+R     I++  K +YD L + EK
Sbjct: 332 RVINYANGNPLAISVYGRELKGKKKLSEMETAFLKLKRRPPFKIVDAFKSTYDTLSDNEK 391

Query: 337 NIFLGVACFFQVR-----------IGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELG 385
           NIFL +ACFFQ              GF   + + VLVDK L+ IS  N++ +H L Q++G
Sbjct: 392 NIFLDIACFFQGENVNYVIQLLEGCGFFPHVEIDVLVDKCLVTIS-ENRVWLHKLTQDIG 450

Query: 386 RDIVSQESNDPGNHNWLWHHEDIYEVLTYN 415
           R+I++ E+        LW    I  +L YN
Sbjct: 451 REIINGETVQIERRRRLWEPWSIKYLLEYN 480

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score =  155 bits (392), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 201/413 (48%), Gaps = 75/413 (18%)

Query: 20  KEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGF 79
           + +  +V+PVFY VD                        +L ++  W     EA  L+  
Sbjct: 101 QNNGHVVVPVFYGVD------------------------SLTRVYGWANSWLEAEKLTSH 136

Query: 80  HYR----SIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESK 135
             +    ++  +SEL+ E+V  +  +L           ++ VG+ +R+ EIE LL  + +
Sbjct: 137 QSKILSNNVLTDSELVEEIVRDVYGKLY---------PAERVGIYARLLEIEKLLYKQHR 187

Query: 136 DVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISN--------------------LL 175
           D+ ++GIWG+ GIGKTT+A+A F+ +S    A+  I N                    +L
Sbjct: 188 DIRSIGIWGMPGIGKTTLAKAVFNHMSTDYDASCFIENFDEAFHKEGLHRLLKERIGKIL 247

Query: 176 KDENAIPG-----IDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTR 230
           KDE  I         L+  +L   ++L+   DV      ES +  LDW    S II+T+ 
Sbjct: 248 KDEFDIESSYIMRPTLHRDKLYDKRILVVLDDVRDSLAAESFLKRLDWFGSGSLIIITSV 307

Query: 231 NKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290
           +KQV     +++IY ++ L  H AL+LFS+  F  N P+    KLS  V+ YV G PLAL
Sbjct: 308 DKQVFAFCQINQIYTVQGLNVHEALQLFSQSVFGINEPEQNDRKLSMKVIDYVNGNPLAL 367

Query: 291 KVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQVR- 349
            + G  L  ++ E+ E+A  +L+      I +VLK +Y  L + EKNI L +A FF+   
Sbjct: 368 SIYGRELMGKKSEM-ETAFFELKHCPPLKIQDVLKNAYSALSDNEKNIVLDIAFFFKGET 426

Query: 350 IGFNLE----------IGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQE 392
           + + ++          + + VLVDK ++ IS N  + M++L+Q+  ++I + E
Sbjct: 427 VNYVMQLLEESHYFPRLAIDVLVDKCVLTISENT-VQMNNLIQDTCQEIFNGE 478

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 121/268 (45%), Gaps = 39/268 (14%)

Query: 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTT----IARATFDKISRYLLAT 168
           +  +VG E+ +E + + L+ +  ++  +G++G+GG+GKTT    I     +K S + +  
Sbjct: 154 QPTIVGQETMLERVWTRLTEDGDEI--VGLYGMGGVGKTTLLTRINNKFSEKCSGFGVVI 211

Query: 169 KLISNLLKDENAIPG-----IDLN----------------FRRLSRMKVLIFFYDVTCFS 207
            ++ +   D + I G     +DL                 +  L + K ++   D+    
Sbjct: 212 WVVVSKSPDIHRIQGDIGKRLDLGGEEWDNVNENQRALDIYNVLGKQKFVLLLDDIWEKV 271

Query: 208 QLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFK--- 264
            LE L           +++ TTR++ V     V    E+  LE + A ELF     +   
Sbjct: 272 NLEVLGVPYPSRQNGCKVVFTTRSRDVCGRMRVDDPMEVSCLEPNEAWELFQMKVGENTL 331

Query: 265 RNHPDVGYEKLSSNVMKYVQGVPLALKVLG-CFLYKREKEVWESAINKLQRIL--YPS-- 319
           + HPD+   +L+  V     G+PLAL V+G     KR  + W +AI+ L      +P   
Sbjct: 332 KGHPDI--PELARKVAGKCCGLPLALNVIGETMACKRMVQEWRNAIDVLSSYAAEFPGME 389

Query: 320 -ILEVLKISYDGLDNKE-KNIFLGVACF 345
            IL +LK SYD L+ ++ K  FL  + F
Sbjct: 390 QILPILKYSYDNLNKEQVKPCFLYCSLF 417

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score = 62.4 bits (150), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 171/392 (43%), Gaps = 83/392 (21%)

Query: 70  LREAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESL 129
           LRE  GLS      I  E+  I EV         EE+      +S +VG +S ++++ + 
Sbjct: 124 LREVEGLSSQGVFDIVTEAAPIAEV---------EEL----PIQSTIVGQDSMLDKVWNC 170

Query: 130 LSVESKDVYALGIWGIGGIGKTTIARATFDKISR---------YLLATK-----LISNLL 175
           L +E K V+ +G++G+GG+GKTT+     +K S+         +++ +K      I   +
Sbjct: 171 L-MEDK-VWIVGLYGMGGVGKTTLLTQINNKFSKLGGGFDVVIWVVVSKNATVHKIQKSI 228

Query: 176 KDENAIPGIDLNFRR-----------LSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSR 224
            ++  + G + + +            L R K ++   D+    +L+ +           +
Sbjct: 229 GEKLGLVGKNWDEKNKNQRALDIHNVLRRKKFVLLLDDIWEKVELKVIGVPYPSGENGCK 288

Query: 225 IILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKR---NHPDVGYEKLSSNVMK 281
           +  TT +K+V    GV    E+  L+  +A +L  +   +    +HPD+   +L+  V +
Sbjct: 289 VAFTTHSKEVCGRMGVDNPMEISCLDTGNAWDLLKKKVGENTLGSHPDI--PQLARKVSE 346

Query: 282 YVQGVPLALKVLG-CFLYKREKEVWESAINKLQRI-----LYPSILEVLKISYDGLDNKE 335
              G+PLAL V+G    +KR  + W  A   L        +   IL +LK SYD L+ ++
Sbjct: 347 KCCGLPLALNVIGETMSFKRTIQEWRHATEVLTSATDFSGMEDEILPILKYSYDSLNGED 406

Query: 336 -KNIFLGVACF---FQVRIGFNLEIGVS----------------------VLVDKSLIVI 369
            K+ FL  + F   F++R    +E  +                        LV  SL++ 
Sbjct: 407 AKSCFLYCSLFPEDFEIRKEMLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSSLLLE 466

Query: 370 SNNNK--ITMHDLLQELGRDIVSQESNDPGNH 399
              +K  ++MHD+++E+   I S    D G H
Sbjct: 467 GAKDKDVVSMHDMVREMALWIFS----DLGKH 494

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 127/288 (44%), Gaps = 43/288 (14%)

Query: 91  INEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGK 150
           +N+    I++R+L   F P+    +++              ++ K+V  +G+WG+GG+GK
Sbjct: 96  VNKSSREIVERVLGPSFHPQKTALEMLDKLKD--------CLKKKNVQKIGVWGMGGVGK 147

Query: 151 TTIARATFDKISRYL-------------------------LATKLISNLLKDENAIPGID 185
           TT+ R   + + +Y                          +A +L     +++    G+ 
Sbjct: 148 TTLVRTLNNDLLKYAATQQFALVIWVTVSKDFDLKRVQMDIAKRLGKRFTREQMNQLGLT 207

Query: 186 LNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDW-LTPVSRIILTTRNKQVLRNWGVSKIY 244
           +  R +     L+   DV     L+ L   L    +  S+++LT+R  +V +    ++  
Sbjct: 208 ICERLIDLKNFLLILDDVWHPIDLDQLGIPLALERSKDSKVVLTSRRLEVCQQMMTNENI 267

Query: 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLY-KREKE 303
           ++  L+   A ELF  +  +  + D   + ++ +V     G+PLA+  +G  L  K + E
Sbjct: 268 KVACLQEKEAWELFCHNVGEVANSD-NVKPIAKDVSHECCGLPLAIITIGRTLRGKPQVE 326

Query: 304 VWESAINKLQRILYPSI------LEVLKISYDGLDNKEKNIFLGVACF 345
           VW+  +N L+R   PSI         LK+SYD L +  K+ FL  A F
Sbjct: 327 VWKHTLNLLKRS-APSIDTEEKIFGTLKLSYDFLQDNMKSCFLFCALF 373

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.943	0.281	0.421	7e-89
356524185	882	PREDICTED: TMV resistance protein N-like	0.936	0.465	0.408	3e-88
255564976	944	TMV resistance protein N, putative [Rici	0.938	0.436	0.450	8e-87
255555357	1094	leucine-rich repeat-containing protein,	0.927	0.372	0.418	4e-86
255561496	876	TMV resistance protein N, putative [Rici	0.945	0.473	0.417	3e-84
359496034	1132	PREDICTED: TMV resistance protein N-like	0.906	0.351	0.428	1e-83
296090597	1201	unnamed protein product [Vitis vinifera]	0.906	0.331	0.428	2e-83
297734814	872	unnamed protein product [Vitis vinifera]	0.886	0.446	0.407	3e-82
359493574	813	PREDICTED: TMV resistance protein N [Vit	0.938	0.506	0.398	3e-82
147774169	924	hypothetical protein VITISV_032106 [Viti	0.917	0.436	0.401	6e-82

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 192/456 (42%), Positives = 278/456 (60%), Gaps = 42/456 (9%)

Query: 18  TQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLS 77
            +K + QIVLPVFY VDPS V  QTGSFG++F++L+  F+Q ++K+  WR  L  A  +S
Sbjct: 93  CKKAYGQIVLPVFYHVDPSDVDQQTGSFGNAFAELERNFKQKMDKVPRWRADLTSAANIS 152

Query: 78  GFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDV 137
           G+  +  RPES L+ ++V+HILK+L    +    +   LVG++SR+E+IE+ L  +  + 
Sbjct: 153 GWDSQVTRPESSLVEQIVHHILKKL---NYASSSDLKGLVGMDSRMEQIEASLCTKLPEF 209

Query: 138 YALGIWGIGGIGKTTIARATFDKISR-----YLLAT---------------KLISNLLKD 177
             +GIWG+GG GKTTIA   F+KI+R     Y LA                +L S + ++
Sbjct: 210 CFVGIWGMGGTGKTTIAGEIFNKIAREYEGHYFLANVRESEKNGGLFRIRDELFSKITEE 269

Query: 178 EN---AIPGIDLNF--RRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNK 232
           EN     P I   F   R+ R K+LI F DV    Q+E L+G  +   P SRIILT+R+K
Sbjct: 270 ENLHIRTPRIGHPFIKDRICRKKILIVFDDVNDVDQIEMLLGGCESFGPGSRIILTSRDK 329

Query: 233 QVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKV 292
           QVL+ +   KI+E+E L +  AL LFS HAFK N P   Y +LS   + Y +G PLALKV
Sbjct: 330 QVLKKYA-DKIFEVEGLNHREALHLFSLHAFKDNQPPYNYMELSVRAINYAKGNPLALKV 388

Query: 293 LGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQVR--- 349
           LG  L+ R  + WESA+NK++++    +  VL+ISY+ LD++EK+IFL +ACFF+     
Sbjct: 389 LGSSLFGRTTKEWESALNKVEKLTRQKVHSVLRISYEALDSEEKSIFLDIACFFRGHRVD 448

Query: 350 --------IGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDP-GNHN 400
                    GF  +IG SVL+D+ LI IS ++K+ MHDLLQE+  D+V +ES D  G  +
Sbjct: 449 FVKRILDGCGFKTDIGFSVLIDRCLIKIS-DDKVEMHDLLQEMAHDVVRKESLDELGGQS 507

Query: 401 WLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKLDM 436
            LW  +D+Y+VLT N  +  +  I L+ S I ++++
Sbjct: 508 RLWSPKDVYQVLTNNLGTGKVEGIFLDVSKIREIEL 543

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524185|ref|XP_003530712.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 37/448 (8%)

Query: 18  TQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLS 77
           ++KE  QIV+PVFY +DPS+VR QTGS+  +F K      +   +   W+  L EA GL+
Sbjct: 105 SKKEKGQIVIPVFYNIDPSHVRKQTGSYEQAFEK-----HEGEPRCNKWKTALTEAAGLA 159

Query: 78  GFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDV 137
           GF  R+ R + EL+ ++V  +L++L     R ++ +  L+G+E   ++IESLL + S +V
Sbjct: 160 GFDSRNYRTDPELLKDIVGAVLRKLPP---RYQNQRKGLIGIEDHCKQIESLLKIGSSEV 216

Query: 138 YALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK-------------DENAIPGI 184
             LGIWG+GGIGKTT+A   +DK+S        ++NL +             D   +  +
Sbjct: 217 KTLGIWGMGGIGKTTLATTLYDKLSHKFEDACFLANLSEQSDKPKNRSFGNFDMANLEQL 276

Query: 185 DLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLD--WLTPVSRIILTTRNKQVLRNWGVSK 242
           D N  RL   KVLI   DVT   QL+ ++   D  +L P SR+I+TTR+KQ+L    V +
Sbjct: 277 DKNHSRLQDKKVLIILDDVTTSEQLDKIIPDFDCDFLGPGSRVIVTTRDKQILSR--VDE 334

Query: 243 IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREK 302
           IY +    +  +L+LF   AF    P+ GY  LS  V+ Y +G+PLALKVLG  L  R K
Sbjct: 335 IYPVGEWSFDKSLQLFCLTAFGEKQPNDGYADLSRMVVSYCKGIPLALKVLGASLRSRSK 394

Query: 303 EVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQVR-----------IG 351
           E+WE  + KLQ+I    I +VLK+SYDGLD  E++IFL +ACFF+ R             
Sbjct: 395 EIWECELRKLQKIPNKEIHKVLKLSYDGLDRSEQDIFLDIACFFKGRDRCWVTRVLEAFE 454

Query: 352 FNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGNHNWLWHHEDIYEV 411
           F    G+++L+DK+LI IS++N I MHDL+QE+GR+IV QES DPG    LW HE++++V
Sbjct: 455 FFPAPGINILLDKALITISDSNLILMHDLIQEMGREIVHQESKDPGRRTRLWRHEEVHDV 514

Query: 412 LTYNTASNLLWIITLEYSSIYKLDMDIS 439
           L YN  ++++  I+L+ S + + D+++S
Sbjct: 515 LKYNKGTDVVEGISLDLSRLNE-DLNLS 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  327 bits (838), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 203/451 (45%), Positives = 271/451 (60%), Gaps = 39/451 (8%)

Query: 18  TQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLS 77
            +K   QIVLPVFY VDPS V  Q G FG +F + ++ F++ ++KLQ WR  L EA  +S
Sbjct: 96  CKKTVGQIVLPVFYHVDPSDVAEQKGGFGAAFIEHEKCFKERIDKLQKWRAALTEAANIS 155

Query: 78  GFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDV 137
           G+    IR ES+LI E+   ILK+L   +    D+K  LVG+ SR+++IE LL VE  DV
Sbjct: 156 GWSSSVIRSESKLIQEIAEDILKKL-NHMSSSTDSKG-LVGINSRIDKIELLLCVELADV 213

Query: 138 YALGIWGIGGIGKTTIARATFDKIS-----------------RY---LLATKLISNLLKD 177
             LG+WG+GG GKTT A   F++IS                 RY    L  +L S LL  
Sbjct: 214 RFLGLWGMGGAGKTTTAEVVFNRISTQFDSCCFLANVNEESERYGLLKLQRQLFSKLLGQ 273

Query: 178 ENA--IPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVL 235
           +N     GI  +  RL   KVLI   DV    QLE+L G  +W  P SRIILT+R+K VL
Sbjct: 274 DNVNYAEGI-FDKSRLKHRKVLIVLDDVNNLRQLENLAGEHNWFGPGSRIILTSRDKDVL 332

Query: 236 RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGC 295
           +N     IY++E L++H AL+LFS +AF++  P   Y KLS  V+ Y +G PL LKVLG 
Sbjct: 333 KN-KTDAIYKIEDLDHHEALQLFSLNAFRQECPKADYMKLSKRVINYAKGNPLGLKVLGS 391

Query: 296 FLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ-------V 348
           FLY+R  + WESA++KL+R     I  VLK+SYDGLD++EK+IFL VACFF         
Sbjct: 392 FLYQRNIKEWESALHKLERSTNKEIQNVLKVSYDGLDDEEKDIFLDVACFFNGEDRDFVT 451

Query: 349 RI----GFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESN-DPGNHNWLW 403
           RI    GF+ +I +SVLV KSL+ ISNN  + +H+LLQ++G  IV QES  +PG  + L 
Sbjct: 452 RILNGCGFSADIAISVLVSKSLLTISNNT-LAIHNLLQQMGWGIVRQESTKEPGRRSRLC 510

Query: 404 HHEDIYEVLTYNTASNLLWIITLEYSSIYKL 434
             ED+  VL+ NT +  +  I L+ S   K+
Sbjct: 511 TSEDVVHVLSKNTGTEAIEGIYLDMSKSRKV 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 187/447 (41%), Positives = 280/447 (62%), Gaps = 40/447 (8%)

Query: 20  KEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGF 79
           K   Q+V+PVFYRVDPS+VRNQTGSF D F++ +E    + EK+Q+WR  L+E   LSG+
Sbjct: 105 KNRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEESLSVSKEKVQSWRAALKEVANLSGW 164

Query: 80  HYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYA 139
           H  S RPE+E + E++  I+K+L +    P      LVG+ESR++EIESLL + S +V  
Sbjct: 165 HSTSTRPEAEAVKEIIEVIVKKLNQ--MSPNCYSRGLVGMESRIQEIESLLCLRSSNVRI 222

Query: 140 LGIWGIGGIGKTTIARATFDKISRYL--------------------LATKLISNLLKDEN 179
           +GIWG+GG+GKTT+ARA +D+I+                       L  +L S LL++++
Sbjct: 223 VGIWGMGGLGKTTLARAIYDRIAPQFEICYFLSNAREQLQRCTLSELQNQLFSTLLEEQS 282

Query: 180 AIPGIDLNF--RRLSRMKVLIFFYDVTCFSQLESLM--GSLDWLTPVSRIILTTRNKQVL 235
            +  +  +F   RL R KVLI   D    +QL+ L+     D+    SRII+T+R+KQVL
Sbjct: 283 TL-NLQRSFIKDRLCRKKVLIVIDDADDSTQLQELLLESEPDYFGSGSRIIITSRDKQVL 341

Query: 236 RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSN-VMKYVQGVPLALKVLG 294
           RN    KIY M+ L+ H AL+LFS  AFK+++P   + +L +  V+KY +G PLAL VLG
Sbjct: 342 RNIARDKIYAMQKLKKHEALQLFSLKAFKQDNPTCRHCRLQAERVVKYAKGNPLALTVLG 401

Query: 295 CFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ------V 348
             L+ + ++ W+SA+ +L+R     I +VL+ISYDGLD++E++IFL +ACFF+      V
Sbjct: 402 SALFGKREKDWKSALERLERNPNKKIDDVLRISYDGLDSEERSIFLDIACFFRGQDRDFV 461

Query: 349 RIGFNLEIG-----VSVLVDKSLIVI-SNNNKITMHDLLQELGRDIVSQESNDPGNHNWL 402
               +   G     +S L+D+S+I++ S+++K+ +HDLLQE+GR IV +ES +P N + L
Sbjct: 462 TKTLDGYYGSAHSVISTLIDRSVIMLSSDSSKLDLHDLLQEMGRKIVFEESKNPENRSRL 521

Query: 403 WHHEDIYEVLTYNTASNLLWIITLEYS 429
           W  ED+  VL  N  +  +  I+L+ S
Sbjct: 522 WTPEDVCYVLNENRGTEAIEGISLDKS 548

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 191/458 (41%), Positives = 282/458 (61%), Gaps = 43/458 (9%)

Query: 18  TQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLS 77
            +K + QIV+PVFYRVDP +VRNQ GSF  +F+K +E  ++ +EK+++WR  L EA  +S
Sbjct: 91  CKKMNGQIVIPVFYRVDPVHVRNQRGSFACAFAKHEETLKERMEKVESWRSALNEAGSIS 150

Query: 78  GFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDV 137
           G++    RPES+LI E+V  I K+L +       +   LVG++SR+E+IES+L ++  DV
Sbjct: 151 GWNSLVARPESKLIEEIVKDISKKLNQT---SPSHSIGLVGIDSRLEQIESMLCLDMSDV 207

Query: 138 YALGIWGIGGIGKTTIARATFDKIS-----------------RYLLAT---KLISNLLKD 177
             +G+WG+GGIGKTT+A A FD+IS                 R LLA    KL S +L++
Sbjct: 208 RIIGVWGMGGIGKTTLAGAIFDQISAQYESSYFLGNVREQLKRCLLAELREKLFSKILEE 267

Query: 178 EN---AIPGIDLNF--RRLSRMKVLIFFYDVTCFSQLESLM-GSLDWLTPVSRIILTTRN 231
           +N     P +   F   RLSR K+L+   DV    QL+ L+ G  D   P SRII+T+R+
Sbjct: 268 KNLDTRTPNLGNTFLKDRLSRKKILVVLDDVDSTMQLQELLPGQHDLFGPGSRIIVTSRD 327

Query: 232 KQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK 291
           KQVL+N  V +IY++E L  H AL+LFS +AFK+N P     ++S+ V  Y +G PLAL+
Sbjct: 328 KQVLKNV-VDEIYKVEGLNQHEALQLFSLNAFKKNSPTNDRVEISTRVADYAKGNPLALR 386

Query: 292 VLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFF----- 346
           VLGC L+ + KE WESA+ KL+ +    I +VL+ SYDGLD +E+NIFL +ACFF     
Sbjct: 387 VLGCALFDKSKEDWESALEKLRNVPNGEIQKVLRFSYDGLDREERNIFLDIACFFRGEDR 446

Query: 347 ----QVRIGFNLEIG--VSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGNHN 400
               ++  G    +G  +S L+DKSL+ +   +K+ MHDLLQE G  IV +E  +    +
Sbjct: 447 NYATKILDGCYSSVGFIISTLIDKSLVSVY-RSKLEMHDLLQETGWSIVREEP-ELEKRS 504

Query: 401 WLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKLDMDI 438
            LW+ +D+Y VLT    +  +  I+L+ S+  ++ ++ 
Sbjct: 505 RLWNPKDVYYVLTKKKGTKAIEGISLDLSTTREMHLEC 542

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496034|ref|XP_002277500.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 186/434 (42%), Positives = 267/434 (61%), Gaps = 36/434 (8%)

Query: 18  TQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLS 77
            +K   Q+VLP+FY+VDPS VR Q GS+G +F+K +E  ++N+EK+  WR+ L E   +S
Sbjct: 91  CKKTKGQVVLPIFYQVDPSDVRKQKGSYGKAFAKHEENMKENMEKVHIWREALSEVGNIS 150

Query: 78  GFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDV 137
           G   R+ + ES LI E+V+ +L  LL       D + QLVG+ S++ E+E LL  ES DV
Sbjct: 151 GRDSRN-KDESVLIKEIVSMLLNELLST--PSSDAEDQLVGIGSQIREMELLLCTESTDV 207

Query: 138 YALGIWGIGGIGKTTIARATFDKISR------YL--------------LATKLISNLLKD 177
             +GIWG+GGIGKTT+A+A ++++S       YL              L  KL+S +L  
Sbjct: 208 RMVGIWGMGGIGKTTLAQAIYNQVSSQFEGCSYLEDAGEDLRKRGLIGLQEKLLSQILGH 267

Query: 178 ENAIPGIDLNFR-RLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR 236
           EN      ++ + RL   +V I   +V     LE L+GS DW    SRII+TTR+K++L 
Sbjct: 268 ENIKLNGPISLKARLCSREVFIVLDNVYDQDILECLVGSHDWFGQGSRIIITTRDKRLLM 327

Query: 237 NWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCF 296
           + GV  +YE++ L +  A+E   R+A K+      + +LS++++ Y QG+PL LKVLG F
Sbjct: 328 SHGVRVVYEVKKLVHTEAIEFLGRYASKQQIVIDEFMELSNSIITYAQGLPLVLKVLGSF 387

Query: 297 LYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ-------VR 349
           L+   K  W S ++KL+   +  I EVL+ISYDGLD+KEKNIFL +ACFF+       ++
Sbjct: 388 LFSMSKHEWRSELDKLKDTPHGRIQEVLRISYDGLDDKEKNIFLDIACFFKGEDKDHVIK 447

Query: 350 I----GFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQES-NDPGNHNWLWH 404
           I    GF    G+  L+DKSLI ISNN+KI MHDLLQE+GR I+ Q S  +PG  + LW 
Sbjct: 448 ILDGCGFFAVCGIRGLIDKSLITISNNDKIVMHDLLQEMGRKIIRQTSPKEPGKRSRLWI 507

Query: 405 HEDIYEVLTYNTAS 418
           ++D Y VL+ NT +
Sbjct: 508 YKDAYHVLSKNTGT 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090597|emb|CBI40966.3| unnamed protein product [Vitis vinifera]

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/434 (42%), Positives = 267/434 (61%), Gaps = 36/434 (8%)

Query: 18  TQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLS 77
            +K   Q+VLP+FY+VDPS VR Q GS+G +F+K +E  ++N+EK+  WR+ L E   +S
Sbjct: 91  CKKTKGQVVLPIFYQVDPSDVRKQKGSYGKAFAKHEENMKENMEKVHIWREALSEVGNIS 150

Query: 78  GFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDV 137
           G   R+ + ES LI E+V+ +L  LL       D + QLVG+ S++ E+E LL  ES DV
Sbjct: 151 GRDSRN-KDESVLIKEIVSMLLNELLST--PSSDAEDQLVGIGSQIREMELLLCTESTDV 207

Query: 138 YALGIWGIGGIGKTTIARATFDKISR------YL--------------LATKLISNLLKD 177
             +GIWG+GGIGKTT+A+A ++++S       YL              L  KL+S +L  
Sbjct: 208 RMVGIWGMGGIGKTTLAQAIYNQVSSQFEGCSYLEDAGEDLRKRGLIGLQEKLLSQILGH 267

Query: 178 ENAIPGIDLNFR-RLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR 236
           EN      ++ + RL   +V I   +V     LE L+GS DW    SRII+TTR+K++L 
Sbjct: 268 ENIKLNGPISLKARLCSREVFIVLDNVYDQDILECLVGSHDWFGQGSRIIITTRDKRLLM 327

Query: 237 NWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCF 296
           + GV  +YE++ L +  A+E   R+A K+      + +LS++++ Y QG+PL LKVLG F
Sbjct: 328 SHGVRVVYEVKKLVHTEAIEFLGRYASKQQIVIDEFMELSNSIITYAQGLPLVLKVLGSF 387

Query: 297 LYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ-------VR 349
           L+   K  W S ++KL+   +  I EVL+ISYDGLD+KEKNIFL +ACFF+       ++
Sbjct: 388 LFSMSKHEWRSELDKLKDTPHGRIQEVLRISYDGLDDKEKNIFLDIACFFKGEDKDHVIK 447

Query: 350 I----GFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQES-NDPGNHNWLWH 404
           I    GF    G+  L+DKSLI ISNN+KI MHDLLQE+GR I+ Q S  +PG  + LW 
Sbjct: 448 ILDGCGFFAVCGIRGLIDKSLITISNNDKIVMHDLLQEMGRKIIRQTSPKEPGKRSRLWI 507

Query: 405 HEDIYEVLTYNTAS 418
           ++D Y VL+ NT +
Sbjct: 508 YKDAYHVLSKNTGT 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734814|emb|CBI17048.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 177/434 (40%), Positives = 264/434 (60%), Gaps = 45/434 (10%)

Query: 25  IVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNL-EKLQTWRKGLREAVGLSGFHYRS 83
           +V+P+FY VDPS VRNQT  +G++F+  ++  E+   EK++ W+  LR+A  L+G+   +
Sbjct: 2   VVIPIFYHVDPSEVRNQTEIYGEAFTHHEKNAEEERKEKIRKWKTALRQASNLAGYDATN 61

Query: 84  IRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIW 143
            R ESELI+E++ ++L+   + +         +VG++SR+E + SLL +E  DV  +G++
Sbjct: 62  -RYESELIDEIIENVLRSFPKTLVV----NENIVGMDSRLERLISLLKIELNDVRMVGVY 116

Query: 144 GIGGIGKTTIARATFDKISRYLLATKLISNLLKD--ENA--------------------- 180
           G+GGIGKTTI  A +++IS    +  L++++ K+  EN+                     
Sbjct: 117 GLGGIGKTTIINALYNRISNQFESVSLLTDVRKESTENSGLLKLQQQLLNDTLRTTRKIV 176

Query: 181 ----IPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR 236
                 GI     +LS  KVL+F  DV   +QLE L+G  DW  P SRII+TTR K +L 
Sbjct: 177 LRDVHEGIKEIRDKLSSKKVLVFLDDVDELTQLEHLIGKHDWFGPGSRIIITTRKKDLLT 236

Query: 237 NWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCF 296
              V+ +YE+E L +H AL+LF R+AFK++HP  GY  LS  V++Y  G+PLALKVLG  
Sbjct: 237 RHEVNDMYEVEKLYFHEALQLFCRYAFKQHHPKEGYGDLSHQVVQYADGLPLALKVLGSL 296

Query: 297 LYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ-------VR 349
           L+ +    W+S + KL+++    I++VLKIS+DGLD  ++ IFL +ACFF+        R
Sbjct: 297 LFGKRLPDWKSELQKLEKVPNMEIVKVLKISFDGLDYTQRMIFLDIACFFRGDDVKRVSR 356

Query: 350 I----GFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQES-NDPGNHNWLWH 404
           I     FN E G++ LVD+  I IS +N+I MHDLL ++G+ IV QE  N+PG  + LW 
Sbjct: 357 ILDASEFNAESGINALVDRCFITISKDNRIDMHDLLAQMGKGIVDQECPNEPGERSRLWR 416

Query: 405 HEDIYEVLTYNTAS 418
           H DIY VL  NT +
Sbjct: 417 HIDIYRVLKRNTGT 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493574|ref|XP_002271071.2| PREDICTED: TMV resistance protein N [Vitis vinifera]

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 182/457 (39%), Positives = 271/457 (59%), Gaps = 45/457 (9%)

Query: 11  KLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERF-EQNLEKLQTWRKG 69
           +LV     ++E  QIV+P+FY VDPS VR QTG  G++F++ +E   E+  EK++ WR  
Sbjct: 95  ELVKIMECKEERGQIVIPIFYNVDPSEVRKQTGICGEAFTRHEENADEERKEKIRKWRTA 154

Query: 70  LREAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESL 129
           + +A  L+G H    R ES LI+E++ ++   L  ++    +N   +VG++SR+E++ SL
Sbjct: 155 MEQAGNLAG-HVAENRYESTLIDEIIENVHGNL-PKILGVNEN---IVGMDSRLEKLISL 209

Query: 130 LSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKD------------ 177
           L +ES DV  +G++G+GGIGKTTI  A +++IS    +  L++N+ K+            
Sbjct: 210 LKIESNDVRMVGVYGLGGIGKTTIINALYNQISHQFESVSLLTNVRKESTKNSGLLKLQQ 269

Query: 178 ---------------ENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPV 222
                          +N   GI +   +LS  KVL+F  DV   +QLE L+G  +W  P 
Sbjct: 270 KLLDDTLRTKGQIVLKNVYEGIKIIRDKLSSKKVLVFLDDVDELTQLEHLIGKHNWFGPG 329

Query: 223 SRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKY 282
           SRII+TTR K +L    V+ IYE++ L +H AL+LF R+AFK++H   GY  LS  V++Y
Sbjct: 330 SRIIITTRKKDLLTRHEVNDIYEVKKLNFHEALQLFCRYAFKQHHLKEGYADLSHQVVRY 389

Query: 283 VQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGV 342
             G+PLALKVLG  L+ +    W+S + KL+++    I+ VLKIS+DGLD  ++ IFL +
Sbjct: 390 ADGLPLALKVLGSLLFGKRLPNWKSELRKLEKVPNMEIVNVLKISFDGLDYTQRMIFLDI 449

Query: 343 ACFFQ-------VRI----GFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQ 391
           ACFF+        RI     FN E G++ LVD+  I IS +  I MHDLL ++G+ IV +
Sbjct: 450 ACFFKGGDVEIVSRILDGSEFNAESGINALVDRCFITISKDKTIEMHDLLAQMGKGIVDE 509

Query: 392 ES-NDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLE 427
           E  N+PG  + LW H DIY VL  NT +  +  I L+
Sbjct: 510 ECPNEPGERSRLWRHTDIYRVLKRNTGTEKIEGIFLD 546

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774169|emb|CAN63551.1| hypothetical protein VITISV_032106 [Vitis vinifera]

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 180/448 (40%), Positives = 265/448 (59%), Gaps = 45/448 (10%)

Query: 11  KLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERF-EQNLEKLQTWRKG 69
           +LV     + E  QIV+P+FY VDPS VR QTG  G++F+  +E   E+  EK++ WR  
Sbjct: 95  ELVKIMECKXERGQIVIPIFYNVDPSEVRKQTGICGEAFTXHEENADEERKEKIRKWRTA 154

Query: 70  LREAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESL 129
           + +A  L+G H    R ES LI+E++ ++   L  ++    +N   +VG++SR+E++ SL
Sbjct: 155 MEQAGNLAG-HVAENRYESTLIDEIIENVHGNL-PKILGVNEN---IVGMDSRLEKLISL 209

Query: 130 LSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKD------------ 177
           L +ES DV  +G++G+GGIGKTTI  A +++IS    +  L++N+ K+            
Sbjct: 210 LKIESNDVRMVGVYGLGGIGKTTIINALYNQISHQFESVSLLTNVRKESTKNSGLLKLQQ 269

Query: 178 ---------------ENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPV 222
                          +N   GI +   +LS  KVL+F  DV   +QLE L+G  +W  P 
Sbjct: 270 KLLDDTLRTKGQIVLKNVYEGIKIIRDKLSSKKVLVFLDDVDELTQLEHLIGKHNWFGPG 329

Query: 223 SRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKY 282
           SRII+TTR K +L    V+ IYE++ L +H AL+LF R+AFK++H   GY  LS  V++Y
Sbjct: 330 SRIIITTRKKDLLTRHEVNDIYEVKKLNFHEALQLFCRYAFKQHHLKEGYADLSHQVVRY 389

Query: 283 VQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGV 342
             G+PLALKVLG  L+ +    W+S + KL+++    I+ VLKIS+DGLD  ++ IFL +
Sbjct: 390 ADGLPLALKVLGSLLFGKRLPNWKSELRKLEKVPNMEIVNVLKISFDGLDYTQRMIFLDI 449

Query: 343 ACFFQ-------VRI----GFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQ 391
           ACFF+        RI     FN E G++ LVD+  I IS +  I MHDLL ++G+ IV +
Sbjct: 450 ACFFKGGDVEIVSRILDGSEFNAESGINALVDRCFITISKDKTIEMHDLLAQMGKGIVDE 509

Query: 392 ES-NDPGNHNWLWHHEDIYEVLTYNTAS 418
           E  N+PG  + LW H DIY VL  NT +
Sbjct: 510 ECPNEPGERSRLWRHTDIYRVLKRNTGT 537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.608	0.233	0.378	3.5e-56
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.539	0.211	0.384	3.8e-51
TAIR|locus:2170408	1139	AT5G46270 [Arabidopsis thalian	0.637	0.245	0.350	9e-51
TAIR|locus:2146243	900	AT5G18360 [Arabidopsis thalian	0.610	0.297	0.366	2.6e-50
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.610	0.265	0.371	1.3e-49
TAIR|locus:2115870	1234	AT4G08450 [Arabidopsis thalian	0.649	0.230	0.348	4.5e-49
TAIR|locus:2170488	1205	AT5G46260 [Arabidopsis thalian	0.610	0.222	0.347	6.8e-49
TAIR|locus:2151466	1353	VICTL "VARIATION IN COMPOUND T	0.548	0.178	0.364	1e-48
TAIR|locus:2151476	1168	VICTR "VARIATION IN COMPOUND T	0.548	0.206	0.364	2.2e-48
TAIR|locus:2032602	1163	AT1G72860 [Arabidopsis thalian	0.521	0.196	0.358	7.3e-48

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 449 (163.1 bits), Expect = 3.5e-56, Sum P(2) = 3.5e-56
 Identities = 110/291 (37%), Positives = 168/291 (57%)

Query:   159 DKISRYLLATKLISNLLKDE----NAIPGIDLNFRRLSRMKVLIFFYDVTCFSQ-LESLM 213
             +K   + L   L+S LL+++    N   G      RL   KVLI   D+      LE L 
Sbjct:   255 NKRGMHSLQNALLSELLREKANYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLA 314

Query:   214 GSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYE 273
             G LDW    SRII+TTR+K ++    +  IYE+ AL  H +++LF +HAF +  P+  +E
Sbjct:   315 GDLDWFGNGSRIIITTRDKHLIEKNDI--IYEVTALPDHESIQLFKQHAFGKEVPNENFE 372

Query:   274 KLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDN 333
             KLS  V+ Y +G+PLALKV G  L+      W+SAI  ++   Y  I++ LKISYDGL+ 
Sbjct:   373 KLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEP 432

Query:   334 KEKNIFLGVACFFQ-------VRI----GFNLEIGVSVLVDKSLIVISNNNKITMHDLLQ 382
             K++ +FL +ACF +       ++I        E G+ +L+DKSL+ IS  N++ MHDL+Q
Sbjct:   433 KQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQ 492

Query:   383 ELGRDIVSQESNDPGNHNWLWHHEDIYEVLTYNT---ASNLLWIITLEYSS 430
             ++G+ IV+ +  DPG  + LW  +++ EV++ NT   A   +W+ +  YSS
Sbjct:   493 DMGKYIVNFQK-DPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVSS--YSS 540

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 3.8e-51, Sum P(2) = 3.8e-51
 Identities = 96/250 (38%), Positives = 142/250 (56%)

Query:   190 RLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEAL 249
             RL   KVLI   D+     L++L+G   W    SRII+ T+NK  LR  G+  +YE    
Sbjct:   289 RLKHQKVLIIIDDLDDQDVLDALVGRTQWFGSGSRIIVVTKNKHFLRAHGIDHVYEACLP 348

Query:   250 EYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAI 309
                 ALE+F R+AF++N P  G+ +LSS V      +PL LKVLG +L  R+ E W   +
Sbjct:   349 SEELALEMFCRYAFRKNSPPDGFMELSSEVALRAGNLPLGLKVLGSYLRGRDIEDWMDMM 408

Query:   310 NKLQRILYPSILEVLKISYDGLDNK-EKNIFLGVACFFQ------VRI-----GFNLEIG 357
              +LQ  L   I + L++SYDGL+NK ++ IF  +AC F       +++       ++ IG
Sbjct:   409 PRLQNDLDGKIEKTLRVSYDGLNNKKDEAIFRHIACLFNGEKVNDIKLLLAESDLDVNIG 468

Query:   358 VSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGNHNWLWHHEDIYEVLTYNTA 417
             +  LVDKSLI +  +  I MH LLQ++G++IV  +SN+PG   +L   + IY+VL  NT 
Sbjct:   469 LKNLVDKSLIFVREDT-IEMHRLLQDMGKEIVRAQSNEPGEREFLVDSKHIYDVLEDNTG 527

Query:   418 SNLLWIITLE 427
             +  +  I L+
Sbjct:   528 TKKVLGIALD 537

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170408 AT5G46270 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 9.0e-51, Sum P(2) = 9.0e-51
 Identities = 103/294 (35%), Positives = 152/294 (51%)

Query:   154 ARATFDKISRYL-LATKLISNLLK-DENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLES 211
             +RA  D  +  L L  KL+S +L+  +  I  + +   RL   KVLI   D+     L+S
Sbjct:   261 SRANPDDHNMKLHLQEKLLSEILRMPDIKIDHLGVLGERLQHQKVLIIVDDLDDQVILDS 320

Query:   212 LMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVG 271
             L+G   W    SRII  T NK  LR   +  IYE+      HAL +  + AF++  P  G
Sbjct:   321 LVGQTQWFGSGSRIIAVTNNKHFLRAHEIDHIYEVSLPTQQHALAMLCQSAFRKKSPPEG 380

Query:   272 YEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGL 331
             +E L   V ++V  +PL L VLG +L  R+KE W   + +L+  L+  I ++L+ISYDGL
Sbjct:   381 FEMLVVQVARHVDSLPLGLNVLGSYLRGRDKEYWMEMLPRLENGLHDKIEKILRISYDGL 440

Query:   332 DNKE-KNIFLGVACFFQ---------VRIGFNLEIGVSVLVDKSLIVISNNNKITMHDLL 381
              ++E K IF  +AC F          +     + IG+  LVDKS+I +     + MH +L
Sbjct:   441 GSEEDKAIFRHIACLFNHMEVTTITSLLTDLGINIGLKNLVDKSIIHV-RRGCVEMHRML 499

Query:   382 QELGRDIVSQESND-PGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKL 434
             QE+GR IV  +S D PG   +L    DI +VL+    +  +  I+L    I +L
Sbjct:   500 QEMGRKIVRTQSIDKPGKREFLVDPNDISDVLSEGIGTQKVLGISLNTGEIDEL 553

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 2.6e-50, Sum P(2) = 2.6e-50
 Identities = 104/284 (36%), Positives = 165/284 (58%)

Query:   166 LATKLISNLLKDENA-IPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSR 224
             L  + +S ++  ++  I  + L   RL  +KVL+   DV    QL++L+    W    SR
Sbjct:   262 LQEQFLSEVIDHKHMKIHDLGLVKERLQDLKVLVVLDDVDKLEQLDALVKQSQWFGSGSR 321

Query:   225 IILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAF-KRNHPDVGYEKLSSNVMKYV 283
             II+TT NKQ+LR  G++ IYE+       +L++F ++AF + + PD G  +L++ + K  
Sbjct:   322 IIVTTENKQLLRAHGITCIYELGFPSRSDSLQIFCQYAFGESSAPD-GCIELATEITKLA 380

Query:   284 QGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVA 343
               +PLALKVLG  L    K+  +SA+ +L+  L   I  VL++ YDG+ +K+K IFL +A
Sbjct:   381 GYLPLALKVLGSSLRGMSKDEQKSALPRLRTSLNEDIRNVLRVGYDGIHDKDKVIFLHIA 440

Query:   344 CFF---------QVRIGFNLEI--GVSVLVDKSLIVISNNNK-ITMHDLLQELGRDIVSQ 391
             C F         Q+     L++  G+ VL  +SLI IS  N+ ITMH+LL++LGR+IV +
Sbjct:   441 CLFNGENVDYVKQILASSGLDVTFGLQVLTSRSLIHISRCNRTITMHNLLEQLGREIVCE 500

Query:   392 ES-NDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKL 434
             +S  +PG   +L    +IY+VL  NT +  +  I+L+ S I +L
Sbjct:   501 QSIAEPGKRQFLMDASEIYDVLADNTGTGAVLGISLDISKINEL 544

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 105/283 (37%), Positives = 156/283 (55%)

Query:   166 LATKLISNLLKDENA-IPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSR 224
             L  K +S +L+ ++  I  + +   RL  MKVLIF  D+     L++L     W    SR
Sbjct:   265 LQGKFLSEILRAKDIKISNLGVVGERLKHMKVLIFIDDLDDQVVLDALASKPHWFGCGSR 324

Query:   225 IILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQ 284
             II+ T++KQ  R  G+   YE+       ALE+FS+ AF++N P  G+ +L+S V K   
Sbjct:   325 IIVITKDKQFFRAHGIGLFYEVGLPSDKLALEMFSQSAFRQNSPPPGFTELASEVSKRSG 384

Query:   285 GVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKE-KNIFLGVA 343
              +PLAL VLG  L  R+KE W   + +L++ L   I ++L++ YD L NK+ K IF  +A
Sbjct:   385 NLPLALNVLGSHLRGRDKEDWIDMLPRLRKGLDGKIEKILRVGYDELSNKDDKAIFRLIA 444

Query:   344 CFFQ-VRIGF--------NL--EIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQE 392
             C F    I +        NL   IG+  LVDKSLI I  +  + MH +LQE+GR+IV ++
Sbjct:   445 CLFNGAEISYIKLLLADSNLGVTIGLKNLVDKSLIRIGCDT-VEMHSMLQEMGREIVREQ 503

Query:   393 S-NDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKL 434
             S  +PG   +L    DI +VL  NT +  +  I+ + S I +L
Sbjct:   504 SIYEPGEREFLVDSTDILDVLNDNTGTKKVLGISFDMSEIEEL 546

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2115870 AT4G08450 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 4.5e-49, Sum P(2) = 4.5e-49
 Identities = 105/301 (34%), Positives = 161/301 (53%)

Query:   154 ARATFDKISRYL-LATKLISNLLKDENA-IPGIDLNFRRLSRMKVLIFFYDVTCFSQLES 211
             +RA  D  +  L L  KL+S LL  +N  I  +D    RL +MKVLIF  D+     LE+
Sbjct:   249 SRANSDDYNLKLHLQEKLLSKLLDKKNLEINHLDAVKERLRQMKVLIFIDDLDDQVVLEA 308

Query:   212 LMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVG 271
             L     W    SRII+ T++K +LR +G+  IYE+       A+++F R AF+++ P  G
Sbjct:   309 LACQTQWFGHGSRIIVITKDKHLLRAYGIDHIYEVLLPSKDLAIKMFCRSAFRKDSPPNG 368

Query:   272 YEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGL 331
             + +L+ +V+K    +PL L +LG +L  R KE W   +  L+  L   I + L++SYDGL
Sbjct:   369 FIELAYDVVKRAGSLPLGLNILGSYLRGRSKEDWIDMMPGLRNKLDGKIQKTLRVSYDGL 428

Query:   332 DNKEKN-IFLGVACFFQVRI-----------GFNLEIGVSVLVDKSLIVISNNNK-ITMH 378
              +++   IF  +AC F               G N+  G+  LVDKSLI I    K + MH
Sbjct:   429 ASEDDQAIFRHIACIFNFEACSDIKKLLEDSGLNVTNGLINLVDKSLIRIEPKQKTVEMH 488

Query:   379 DLLQELGRDIVSQES-NDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKLDMD 437
              LLQE  R+I+  +S +DPG   +L   +DI +VL   + +  +  I+L+   I +L + 
Sbjct:   489 CLLQETAREIIRAQSFDDPGKREFLVDGKDIADVLDNCSGTRKVLGISLDMDEIEELHLQ 548

Query:   438 I 438
             +
Sbjct:   549 V 549

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170488 AT5G46260 [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
 Identities = 98/282 (34%), Positives = 147/282 (52%)

Query:   166 LATKLISNLLKDENA-IPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSR 224
             L    +S +L+  N  I  + +   RL   KVLI   DV     L+SL+G   W    SR
Sbjct:   263 LQESFLSEILRMPNIKIDHLGVLGERLQHQKVLIIIDDVDDQVILDSLVGKTQWFGNGSR 322

Query:   225 IILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQ 284
             II+ T NK  L   G+ ++YE+      HAL +  + AFK+  P  G+E L   V +Y  
Sbjct:   323 IIVVTNNKHFLTAHGIDRMYEVSLPTEEHALAMLCQSAFKKKSPPEGFEMLVVQVARYAG 382

Query:   285 GVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVAC 344
              +PL LKVLG +L  ++KE W   + +LQ  L   I  +L+ISYDGL+++++ IF  +AC
Sbjct:   383 SLPLVLKVLGSYLSGKDKEYWIDMLPRLQNGLNDKIERILRISYDGLESEDQAIFRHIAC 442

Query:   345 FFQ-VRIG----------FNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQES 393
              F  + +           +   +G+  LVDKS+I +   + + MH LLQE+GR IV  +S
Sbjct:   443 IFNHMEVTTIKSLLANSIYGANVGLQNLVDKSIIHVRWGH-VEMHPLLQEMGRKIVRTQS 501

Query:   394 -NDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKL 434
                P    +L    DI +VL+    +  +  I+LE S I +L
Sbjct:   502 IGKPRKREFLVDPNDICDVLSEGIDTQKVLGISLETSKIDEL 543

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151466 VICTL "VARIATION IN COMPOUND TRIGGERED ROOT growth response-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
 Identities = 93/255 (36%), Positives = 136/255 (53%)

Query:   190 RLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEAL 249
             RL   K LI   D+     L+SL+G  +W    SRII+ T NKQ LR  G+  IYE+   
Sbjct:   288 RLKHQKTLIIIDDLDDLVVLDSLVGKTNWFGCGSRIIVITNNKQFLRAHGIDHIYEVSLP 347

Query:   250 EYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAI 309
                 A E+F + AF  N P  G+E+L   +      +PL L V G  L  R+KE W   +
Sbjct:   348 SKERAQEMFCQSAFGENSPPEGFEELVVEIAWLAGSLPLGLTVFGSALRGRKKEYWVKML 407

Query:   310 NKLQRILYPSILEVLKISYDGLDN-KEKNIFLGVACFFQ-VRI----------GFNLEIG 357
              +LQ  L  +I E LK+SYD + N K++ +F  +AC F  V++          G ++ I 
Sbjct:   408 PRLQNDLDGNIEETLKVSYDAIGNVKDQALFRLIACLFNHVKVRDIELLLADSGLDVNIA 467

Query:   358 VSVLVDKSLIVISNNNKITMHDLLQELGRDIV-SQESNDPGNHNWLWHHEDIYEVLTYNT 416
             +  LVDKSLI + N++ + MH LLQE GR+IV SQ +++PG   +L    D   VL+   
Sbjct:   468 LENLVDKSLIHVRNDH-VEMHRLLQETGRNIVRSQSTDNPGEREFLVDSNDSRTVLSEGI 526

Query:   417 ASNLLWIITLEYSSI 431
              +  +  I+L+ S +
Sbjct:   527 GTRKVLGISLDTSKV 541

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151476 VICTR "VARIATION IN COMPOUND TRIGGERED ROOT growth response" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 2.2e-48, Sum P(2) = 2.2e-48
 Identities = 93/255 (36%), Positives = 136/255 (53%)

Query:   190 RLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEAL 249
             RL   K LI   D+     L+SL+G  +W    SRII+ T NKQ LR  G+  IYE+   
Sbjct:   289 RLKHQKTLIIIDDLDDLVVLDSLVGKTNWFGCGSRIIVITNNKQFLRAHGIDHIYEVSLP 348

Query:   250 EYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAI 309
                 A E+F + AF  N P  G+E+L   +      +PL L V G  L  R+KE W   +
Sbjct:   349 SKERAQEMFCQSAFGENSPPEGFEELVVEIAWLAGSLPLGLTVFGSALRGRKKEYWVKML 408

Query:   310 NKLQRILYPSILEVLKISYDGLDN-KEKNIFLGVACFFQ-VRI----------GFNLEIG 357
              +LQ  L  +I E LK+SYD + N K++ +F  +AC F  V++          G ++ I 
Sbjct:   409 PRLQNDLDGNIEETLKVSYDAIGNVKDQALFRLIACLFNHVKVRDIELLLADSGLDVNIA 468

Query:   358 VSVLVDKSLIVISNNNKITMHDLLQELGRDIV-SQESNDPGNHNWLWHHEDIYEVLTYNT 416
             +  LVDKSLI + N++ + MH LLQE GR+IV SQ +++PG   +L    D   VL+   
Sbjct:   469 LENLVDKSLIHVRNDH-VEMHRLLQETGRNIVRSQSTDNPGEREFLVDSNDSRTVLSEGI 527

Query:   417 ASNLLWIITLEYSSI 431
              +  +  I+L+ S +
Sbjct:   528 GTRKVLGISLDTSKV 542

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2032602 AT1G72860 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.3e-48, Sum P(2) = 7.3e-48
 Identities = 87/243 (35%), Positives = 133/243 (54%)

Query:   190 RLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEAL 249
             R    KV +   +V    Q+ +      W  P SRII+TTR+K +L  +GV  +YE++ +
Sbjct:   286 RFGCRKVFVVLDNVDDMRQMHAFAQESSWFGPGSRIIITTRDKGLLNTYGVRTVYEVKCM 345

Query:   250 EYHHALELFSRHAFKRNHPDVG-YEKLSSNVMKYVQGVPLALKVLGCFLYKREK-EVWES 307
             +   AL+LF++ AFK   P    YEKLS       QG+P+A++  G F  +    + W+ 
Sbjct:   346 DNDAALQLFNQLAFKGALPPSELYEKLSIRASWLAQGLPVAIEAYGLFFRRMTSLKEWDD 405

Query:   308 AINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ---VRIGFNLE--------I 356
             A+ +       S++E+LKISYDGL+  +KN+FL VAC F    +R    L         +
Sbjct:   406 ALCRFIEAPDESVMEILKISYDGLEETDKNVFLHVACLFNGEPLRRATTLLDDGVLQGCL 465

Query:   357 GVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGN-HNWLWHHEDIYEVLTYN 415
             G+ +L +KSLI I+ +  I MH+L+ +  R IV+QES    +    LW+  +IYE+L  N
Sbjct:   466 GLKILAEKSLIEITASGYIKMHNLVDQTARAIVNQESMQRRHGRGVLWNPYEIYELLKRN 525

Query:   416 TAS 418
             T S
Sbjct:   526 TTS 528

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	439
PLN03210	1153	PLN03210, PLN03210, Resistant to P	9e-80
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	4e-26
pfam01582	135	pfam01582, TIR, TIR domain	1e-06
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	3e-05

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  267 bits (683), Expect = 9e-80
 Identities = 161/460 (35%), Positives = 244/460 (53%), Gaps = 50/460 (10%)

Query: 19  QKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSG 78
           ++E  Q+V+PVFY +DPS+VR QTG FG++F K  +   ++ +    W++ L +   + G
Sbjct: 94  KEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQ--WKQALTDVANILG 151

Query: 79  FHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVY 138
           +H ++   E+++I E+ N +L +L      P ++    VG+E  + ++ SLL +ES++V 
Sbjct: 152 YHSQNWPNEAKMIEEIANDVLGKLN---LTPSNDFEDFVGIEDHIAKMSSLLHLESEEVR 208

Query: 139 ALGIWGIGGIGKTTIARATFDKISR--------------------------------YLL 166
            +GIWG  GIGKTTIARA F ++SR                                +L 
Sbjct: 209 MVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQ 268

Query: 167 ATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRII 226
              L   L K +  I  +     RL   KVLIF  D+     L++L G   W    SRII
Sbjct: 269 RAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328

Query: 227 LTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV 286
           + T++K  LR  G+  IYE+       ALE+F R AFK+N P  G+ +L+S V      +
Sbjct: 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNL 388

Query: 287 PLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDN-KEKNIFLGVACF 345
           PL L VLG +L  R+KE W   + +L+  L   I + L++SYDGL+N K+K IF  +AC 
Sbjct: 389 PLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACL 448

Query: 346 FQ-----------VRIGFNLEIGVSVLVDKSLIVISNNNKITMHDLLQELGRDIVSQESN 394
           F                 ++ IG+  LVDKSLI +  +  + MH LLQE+G++IV  +SN
Sbjct: 449 FNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDI-VEMHSLLQEMGKEIVRAQSN 507

Query: 395 DPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKL 434
           +PG   +L   +DI +VL  NT +  +  ITL+   I +L
Sbjct: 508 EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547

syringae 6; Provisional. Length = 1153

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score =  106 bits (267), Expect = 4e-26
 Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 37/277 (13%)

Query: 119 VESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARA---------TFD-----KISR- 163
            E  +E +   L   S ++  +GI G+GG+GKTT+A+           FD      +S+ 
Sbjct: 1   REDMIEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKT 60

Query: 164 ---YLLATKLISNLLKDENAIPGIDLN------FRRLSRMKVLIFFYDVTCFSQLESLMG 214
              + L   ++  L  D++     + +         L R + L+   DV   +  + +  
Sbjct: 61  YTEFRLQKDILQELGLDDSDWVEKNESELAVKIKEALLRKRFLLVLDDVWEKNDWDKIGV 120

Query: 215 SLDWLTPVSRIILTTRNKQVLRNWGV-SKIYEMEALEYHHALELFSRHAFKRNHP-DVGY 272
                   SR+I+TTR++ V    G  SK +E+E+LE   + ELFS   F++  P     
Sbjct: 121 PFPDGENGSRVIVTTRSESVAGRMGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPEL 180

Query: 273 EKLSSNVMKYVQGVPLALKVLGCFL-YKREKEVWESAINKLQRILYP-----SILEVLKI 326
           E+++  +++  +G+PLALKVLG  L +K   + WE  + +L   L        +L +L +
Sbjct: 181 EEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLNEVLSILSL 240

Query: 327 SYDGLDNKEKNIFLGVACFFQVRIGFNLEIGVSVLVD 363
           SYD L    K  FL +A F +        I    L+ 
Sbjct: 241 SYDNLPMHLKRCFLYLALFPEDY-----NIRKEQLIK 272

Length = 285

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 19/45 (42%), Positives = 31/45 (68%)

Query: 24  QIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRK 68
           +++LP+FY+VDPS VR Q+G FG +F K  +      +K++ W+K
Sbjct: 88  KVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWSGDKEDKIRFWKK 132

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 16  HLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLR 71
               +E    V+P+FY V PS VR Q G F   F K   ++    EK Q W+K L 
Sbjct: 81  ENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKW-PEDEKEQFWKKALY 135

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	439
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	100.0
PLN03194	187	putative disease resistance protein; Provisional	99.8
PRK04841	903	transcriptional regulator MalT; Provisional	99.6
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.29
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.29
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.29
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.25
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.22
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.21
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.13
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.06
COG3899	849	Predicted ATPase [General function prediction only	98.98
PF05729	166	NACHT: NACHT domain	98.96
PRK06893	229	DNA replication initiation factor; Validated	98.87
PRK13342	413	recombination factor protein RarA; Reviewed	98.85
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.8
COG3903	414	Predicted ATPase [General function prediction only	98.75
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.71
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.71
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.7
PRK04195	482	replication factor C large subunit; Provisional	98.67
KOG2028	554	consensus ATPase related to the helicase subunit o	98.65
PF13173	128	AAA_14: AAA domain	98.64
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.64
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.62
PLN03025	319	replication factor C subunit; Provisional	98.62
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.61
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.59
PRK12402	337	replication factor C small subunit 2; Reviewed	98.59
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.58
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.56
PRK09087	226	hypothetical protein; Validated	98.54
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.53
PRK13341	725	recombination factor protein RarA/unknown domain f	98.52
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.51
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.51
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.46
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.46
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.44
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.42
PRK05642	234	DNA replication initiation factor; Validated	98.41
PRK08727	233	hypothetical protein; Validated	98.41
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.4
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.39
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.39
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.37
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.36
PRK08084	235	DNA replication initiation factor; Provisional	98.35
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.35
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.34
PTZ00202	550	tuzin; Provisional	98.33
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.33
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.33
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.33
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.32
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.31
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.3
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.3
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.28
PRK06620	214	hypothetical protein; Validated	98.28
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	98.28
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.27
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.27
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.24
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.23
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.22
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.22
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.22
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.19
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.19
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.19
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.17
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.17
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.16
PHA02544	316	44 clamp loader, small subunit; Provisional	98.15
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.14
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.13
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.12
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.12
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.12
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.12
CHL00176	638	ftsH cell division protein; Validated	98.12
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.11
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.11
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	98.1
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.1
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.09
CHL00095	821	clpC Clp protease ATP binding subunit	98.09
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.08
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.05
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.04
PF14516	331	AAA_35: AAA-like domain	98.04
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.02
CHL00181	287	cbbX CbbX; Provisional	98.02
PRK12422	445	chromosomal replication initiation protein; Provis	98.01
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.0
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	97.99
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.99
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	97.97
PRK10865	857	protein disaggregation chaperone; Provisional	97.96
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.95
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	97.95
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	97.94
PRK12377	248	putative replication protein; Provisional	97.91
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	97.89
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.88
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.87
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	97.86
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	97.84
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.84
PF00004	132	AAA: ATPase family associated with various cellula	97.82
smart00255	140	TIR Toll - interleukin 1 - resistance.	97.81
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	97.8
PRK06526	254	transposase; Provisional	97.79
PRK08116	268	hypothetical protein; Validated	97.78
CHL00195	489	ycf46 Ycf46; Provisional	97.77
PRK07952	244	DNA replication protein DnaC; Validated	97.74
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.72
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.72
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.69
PRK08181	269	transposase; Validated	97.68
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.68
PRK05707	328	DNA polymerase III subunit delta'; Validated	97.67
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.64
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	97.62
PRK09183	259	transposase/IS protein; Provisional	97.57
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.57
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.56
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	97.53
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.46
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.46
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.45
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.43
PRK07399	314	DNA polymerase III subunit delta'; Validated	97.4
PRK10865	857	protein disaggregation chaperone; Provisional	97.38
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.36
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	97.36
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.32
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.31
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.29
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.27
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.25
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.25
PRK08769	319	DNA polymerase III subunit delta'; Validated	97.24
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	97.24
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	97.22
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	97.22
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.21
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.2
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.18
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.16
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.12
PRK10536	262	hypothetical protein; Provisional	97.11
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.11
PRK06835	329	DNA replication protein DnaC; Validated	97.11
PRK09376	416	rho transcription termination factor Rho; Provisio	97.08
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	97.07
CHL00095	821	clpC Clp protease ATP binding subunit	97.04
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.04
PRK08939	306	primosomal protein DnaI; Reviewed	97.03
PRK06090	319	DNA polymerase III subunit delta'; Validated	97.02
PRK08058	329	DNA polymerase III subunit delta'; Validated	97.01
PRK06696	223	uridine kinase; Validated	97.0
cd01128	249	rho_factor Transcription termination factor rho is	96.97
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	96.95
PRK06871	325	DNA polymerase III subunit delta'; Validated	96.94
PRK08118	167	topology modulation protein; Reviewed	96.93
PRK07667	193	uridine kinase; Provisional	96.93
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.91
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.9
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	96.9
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	96.87
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	96.87
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.86
PRK06964	342	DNA polymerase III subunit delta'; Validated	96.85
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	96.84
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.83
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	96.82
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.8
PRK07993	334	DNA polymerase III subunit delta'; Validated	96.79
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.78
PRK06921	266	hypothetical protein; Provisional	96.78
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.78
PRK11608	326	pspF phage shock protein operon transcriptional ac	96.76
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	96.74
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.72
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.69
PRK07261	171	topology modulation protein; Provisional	96.68
PF10236	309	DAP3: Mitochondrial ribosomal death-associated pro	96.68
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	96.63
PRK15455	644	PrkA family serine protein kinase; Provisional	96.63
KOG1514	767	consensus Origin recognition complex, subunit 1, a	96.61
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	96.61
PTZ00494	664	tuzin-like protein; Provisional	96.6
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	96.59
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.57
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.54
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.52
TIGR00767	415	rho transcription termination factor Rho. Members	96.52
PRK04132	846	replication factor C small subunit; Provisional	96.51
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	96.51
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	96.48
PRK06762	166	hypothetical protein; Provisional	96.47
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	96.46
PRK08233	182	hypothetical protein; Provisional	96.45
PRK05480	209	uridine/cytidine kinase; Provisional	96.44
CHL00206	2281	ycf2 Ycf2; Provisional	96.43
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	96.4
PRK03839	180	putative kinase; Provisional	96.37
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.35
KOG0736	953	consensus Peroxisome assembly factor 2 containing	96.34
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.33
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	96.33
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.31
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	96.31
smart00382	148	AAA ATPases associated with a variety of cellular	96.3
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	96.29
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	96.29
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.27
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.26
PRK10416	318	signal recognition particle-docking protein FtsY;	96.25
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	96.25
PRK05022	509	anaerobic nitric oxide reductase transcription reg	96.24
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	96.24
PTZ00301	210	uridine kinase; Provisional	96.24
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.23
PRK08699	325	DNA polymerase III subunit delta'; Validated	96.21
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.19
PRK00625	173	shikimate kinase; Provisional	96.19
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.18
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	96.18
PRK04040	188	adenylate kinase; Provisional	96.17
PRK00131	175	aroK shikimate kinase; Reviewed	96.15
PRK06547	172	hypothetical protein; Provisional	96.15
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	96.15
PHA00729	226	NTP-binding motif containing protein	96.15
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.14
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.11
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	96.09
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.06
COG1875	436	NYN ribonuclease and ATPase of PhoH family domains	96.03
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	96.02
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.01
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	96.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.99
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.99
PRK13531	498	regulatory ATPase RavA; Provisional	95.98
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	95.97
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.96
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	95.95
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.93
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	95.93
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.91
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	95.9
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	95.87
PRK05541	176	adenylylsulfate kinase; Provisional	95.87
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	95.85
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.83
PRK13947	171	shikimate kinase; Provisional	95.82
PRK06217	183	hypothetical protein; Validated	95.81
PF07726	131	AAA_3: ATPase family associated with various cellu	95.81
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	95.8
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	95.78
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	95.77
KOG3928	461	consensus Mitochondrial ribosome small subunit com	95.77
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.76
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.75
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	95.74
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	95.74
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.72
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	95.72
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	95.71
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	95.7
PRK14974	336	cell division protein FtsY; Provisional	95.69
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	95.68
PRK00889	175	adenylylsulfate kinase; Provisional	95.66
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	95.63
PRK14530	215	adenylate kinase; Provisional	95.63
PRK12608	380	transcription termination factor Rho; Provisional	95.63
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	95.61
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	95.61
PRK13949	169	shikimate kinase; Provisional	95.6
PRK00409	782	recombination and DNA strand exchange inhibitor pr	95.59
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	95.58
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	95.57
PRK04296	190	thymidine kinase; Provisional	95.56
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	95.55
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.55
PLN02674	244	adenylate kinase	95.54
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.53
PRK05439	311	pantothenate kinase; Provisional	95.53
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	95.52
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	95.52
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	95.52
PRK12339	197	2-phosphoglycerate kinase; Provisional	95.52
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	95.48
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	95.46
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	95.44
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	95.4
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	95.38
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	95.34
PRK14529	223	adenylate kinase; Provisional	95.34
cd01394	218	radB RadB. The archaeal protein radB shares simila	95.33
COG0488	530	Uup ATPase components of ABC transporters with dup	95.33
PRK13975	196	thymidylate kinase; Provisional	95.32
PRK14526	211	adenylate kinase; Provisional	95.32
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	95.31
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	95.3
PRK13946	184	shikimate kinase; Provisional	95.29
PRK14738	206	gmk guanylate kinase; Provisional	95.27
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	95.24
PRK10867	433	signal recognition particle protein; Provisional	95.24
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.23
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	95.23
PLN02200	234	adenylate kinase family protein	95.21
PRK14527	191	adenylate kinase; Provisional	95.2
COG5635	824	Predicted NTPase (NACHT family) [Signal transducti	95.19
PRK00300	205	gmk guanylate kinase; Provisional	95.19
PRK03846	198	adenylylsulfate kinase; Provisional	95.19
PRK04182	180	cytidylate kinase; Provisional	95.19
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	95.18
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	95.16
PRK05057	172	aroK shikimate kinase I; Reviewed	95.16
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	95.14
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	95.13
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	95.12
PRK13948	182	shikimate kinase; Provisional	95.12
PHA02244	383	ATPase-like protein	95.12
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.09
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	95.07
TIGR00959	428	ffh signal recognition particle protein. This mode	95.06
PRK14532	188	adenylate kinase; Provisional	95.06
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	95.04
PRK13235	274	nifH nitrogenase reductase; Reviewed	95.03
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	95.03
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	95.02
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	95.01
PRK14531	183	adenylate kinase; Provisional	94.99
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	94.99
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	94.98
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	94.98
PRK03731	171	aroL shikimate kinase II; Reviewed	94.98
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	94.94
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	94.94
PRK15453	290	phosphoribulokinase; Provisional	94.93
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	94.92
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	94.92
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	94.89
PLN02318	656	phosphoribulokinase/uridine kinase	94.85
PRK11823	446	DNA repair protein RadA; Provisional	94.84
PTZ00088	229	adenylate kinase 1; Provisional	94.84
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	94.83
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	94.82
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	94.81
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	94.81
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	94.8
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	94.78
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	94.78
PRK14737	186	gmk guanylate kinase; Provisional	94.71
PHA02530	300	pseT polynucleotide kinase; Provisional	94.71
PLN02459	261	probable adenylate kinase	94.7
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	94.69
PRK01184	184	hypothetical protein; Provisional	94.69
PLN02348	395	phosphoribulokinase	94.69
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	94.68
PF13245	76	AAA_19: Part of AAA domain	94.67
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	94.66
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	94.66
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	94.65
TIGR02237	209	recomb_radB DNA repair and recombination protein R	94.62
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	94.62
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	94.62
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	94.62
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	94.61
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	94.6
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	94.58
PRK08356	195	hypothetical protein; Provisional	94.58
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	94.56
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	94.56
PRK06761	282	hypothetical protein; Provisional	94.52
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	94.52
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	94.51
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	94.5
PRK00279	215	adk adenylate kinase; Reviewed	94.5
cd03115	173	SRP The signal recognition particle (SRP) mediates	94.49
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	94.49
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	94.49
PRK09825	176	idnK D-gluconate kinase; Provisional	94.47
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	94.46
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	94.46
PRK13695	174	putative NTPase; Provisional	94.46
PRK02496	184	adk adenylate kinase; Provisional	94.46
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	94.43
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	94.42
PRK14528	186	adenylate kinase; Provisional	94.42
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	94.41
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	94.41
PRK13234	295	nifH nitrogenase reductase; Reviewed	94.39
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	94.38
PRK12338	319	hypothetical protein; Provisional	94.37
cd03116	159	MobB Molybdenum is an essential trace element in t	94.33
COG0714	329	MoxR-like ATPases [General function prediction onl	94.33
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	94.3
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	94.29
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	94.29
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	94.29
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	94.27
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	94.26
KOG1969	877	consensus DNA replication checkpoint protein CHL12	94.26
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	94.23
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	94.22
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	94.2
KOG0736	953	consensus Peroxisome assembly factor 2 containing	94.18
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	94.17
PRK13768	253	GTPase; Provisional	94.13
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.11
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	94.08
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	94.07
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	94.06
TIGR01287	275	nifH nitrogenase iron protein. This model describe	94.03
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	94.03
PF11868	192	DUF3388: Protein of unknown function (DUF3388); In	94.02
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	94.02
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	94.0
PRK08099	399	bifunctional DNA-binding transcriptional repressor	93.99
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	93.96
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	93.96
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	93.95
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	93.94
PLN02165	334	adenylate isopentenyltransferase	93.94
COG1100	219	GTPase SAR1 and related small G proteins [General	93.92
PHA02774	613	E1; Provisional	93.92
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	93.92
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	93.91
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	93.91
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	93.9
PLN02796	347	D-glycerate 3-kinase	93.88
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	93.86
cd03114	148	ArgK-like The function of this protein family is u	93.86
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	93.83
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	93.83
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	93.83
PRK13808	333	adenylate kinase; Provisional	93.82
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	93.81
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	93.79
PRK00698	205	tmk thymidylate kinase; Validated	93.79
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	93.78
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	93.78
cd02117	212	NifH_like This family contains the NifH (iron prot	93.78
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	93.77
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	93.75
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	93.75
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	93.74
PRK04220	301	2-phosphoglycerate kinase; Provisional	93.74
PF13479	213	AAA_24: AAA domain	93.7
PRK14730	195	coaE dephospho-CoA kinase; Provisional	93.7
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	93.69
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	93.69
PF00006	215	ATP-synt_ab: ATP synthase alpha/beta family, nucle	93.67
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	93.67
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	93.66
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	93.65
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	93.62
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	93.62
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	93.61
cd02034	116	CooC The accessory protein CooC, which contains a	93.6
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	93.6
PRK08533	230	flagellar accessory protein FlaH; Reviewed	93.6
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	93.58
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	93.57
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	93.56
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	93.55
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	93.52
KOG0927	614	consensus Predicted transporter (ABC superfamily)	93.51
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	93.5
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	93.49
PRK06851	367	hypothetical protein; Provisional	93.48
PRK07429	327	phosphoribulokinase; Provisional	93.48
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	93.47
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	93.47
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	93.45
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	93.42
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	93.41
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	93.4
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	93.4
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	93.39
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	93.38
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	93.38
PRK07132	299	DNA polymerase III subunit delta'; Validated	93.37
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	93.37
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	93.35
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	93.35
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	93.34
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	93.3
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	93.3
PRK06067	234	flagellar accessory protein FlaH; Validated	93.3
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	93.27
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	93.26

>PLN03210 Resistant to P

Probab=100.00  E-value=6.6e-81  Score=698.58  Aligned_cols=428  Identities=38%  Similarity=0.637  Sum_probs=387.6

Q ss_pred             cccchHHHHHHHHhhhhcCCCEEEEEeeecCccccccccccchhhHHHHHHHhhhchHHHHHHHHHHHHHhccccccccC
Q 037205            4 CSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRS   83 (439)
Q Consensus         4 ~~~~~~~el~~i~~~~~~~~~~vlPiFy~v~ps~vr~q~~~~~~~~~~~~~~~~~~~e~v~~W~~aL~~~~~~~g~~~~~   83 (439)
                      .|+||++|||+|++|+++++++|+||||+|||+|||+|+|+||++|.++..+.  ..+++++||+||+++|+++||++..
T Consensus        79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~  156 (1153)
T PLN03210         79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQN  156 (1153)
T ss_pred             cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCC
Confidence            59999999999999999999999999999999999999999999999988754  3568999999999999999999987


Q ss_pred             CcchhhHHHHHHHhhhhcccccccCCCCCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205           84 IRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus        84 ~~~e~~~i~~iv~~i~~~l~~~~~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ...|+++|++||++|.+++..+++   .+..++|||+.+++++.++|..+.+++++|+||||||+||||||+.+|+++..
T Consensus       157 ~~~E~~~i~~Iv~~v~~~l~~~~~---~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~  233 (1153)
T PLN03210        157 WPNEAKMIEEIANDVLGKLNLTPS---NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR  233 (1153)
T ss_pred             CCCHHHHHHHHHHHHHHhhccccC---cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence            667999999999999999987766   67789999999999999999877888999999999999999999999998765


Q ss_pred             ------HH-------------------------HHHHHHHHHhcCCC-CCCcHHHHHHHhccCCceEEecCCCCHHHHHH
Q 037205          164 ------YL-------------------------LATKLISNLLKDEN-AIPGIDLNFRRLSRMKVLIFFYDVTCFSQLES  211 (439)
Q Consensus       164 ------f~-------------------------~~~~ll~~l~~~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~  211 (439)
                            |+                         ++.+++..+..... .......+++++.++++||||||||+..+|+.
T Consensus       234 ~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~  313 (1153)
T PLN03210        234 QFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDA  313 (1153)
T ss_pred             cCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHH
Confidence                  21                         22334444444332 23344678889999999999999999999999


Q ss_pred             HhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205          212 LMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK  291 (439)
Q Consensus       212 l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~  291 (439)
                      +.....++++||+||||||+..++..+++..+|+++.|+.++|++||+++||+...+++++.+++++|+++|+|+||||+
T Consensus       314 L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~  393 (1153)
T PLN03210        314 LAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLN  393 (1153)
T ss_pred             HHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHH
Confidence            99888889999999999999999988888899999999999999999999998877777889999999999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCH-HhHHHHhcccccccc-----------cCCCchhHHHH
Q 037205          292 VLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDN-KEKNIFLGVACFFQV-----------RIGFNLEIGVS  359 (439)
Q Consensus       292 ~~g~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~-~~k~~fl~la~f~~~-----------~~~~~~~~~l~  359 (439)
                      ++|++|++++..+|+.++++++..++..|..+|++||++|++ .+|.||++|||||.+           .+++.++..++
T Consensus       394 vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~  473 (1153)
T PLN03210        394 VLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLK  473 (1153)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChH
Confidence            999999999999999999999988888999999999999986 589999999999987           45667778899


Q ss_pred             HHhhCCceEEccCCeEEecHHHHHHHHHHHhhhcCCCCCeeeccChhhHHHHHhhCcCCccEEEEEEecCCcceeccc
Q 037205          360 VLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKLDMD  437 (439)
Q Consensus       360 ~L~~~sLi~~~~~~~~~mHdlv~~~a~~i~~~e~~~~~~~~rl~~~~~~~~~l~~~~~~~~v~~i~~~~~~~~~~~~~  437 (439)
                      .|+++|||++. .+++.||||+|+||++++++++.+|++|+++|+++|+++++.+++|+++|+||++|++++.+++++
T Consensus       474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~  550 (1153)
T PLN03210        474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH  550 (1153)
T ss_pred             HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence            99999999987 678999999999999999999888999999999999999999999999999999999999887654

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-44  Score=389.16  Aligned_cols=273  Identities=29%  Similarity=0.396  Sum_probs=239.4

Q ss_pred             ccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh-H--------HH----------HHHHHHHHHhcC
Q 037205          117 VGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS-R--------YL----------LATKLISNLLKD  177 (439)
Q Consensus       117 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~--------f~----------~~~~ll~~l~~~  177 (439)
                      ||.+..++.+.+.|..++  ..+++|+||||+||||||++++|+.. .        |+          ++.+++..+...
T Consensus       161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~  238 (889)
T KOG4658|consen  161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL  238 (889)
T ss_pred             ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence            999999999999998544  38999999999999999999999987 3        44          788888877764


Q ss_pred             CCCC------CcHHHHHHHhccCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHh-cCCCeEEEcCCCC
Q 037205          178 ENAI------PGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRN-WGVSKIYEMEALE  250 (439)
Q Consensus       178 ~~~~------~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~~~~~~~~l~~L~  250 (439)
                      ....      .....+.+.|+++|+||||||||+..+|+.+..+++...+||+|++|||+..|+.. +++...++++.|+
T Consensus       239 ~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~  318 (889)
T KOG4658|consen  239 DEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLT  318 (889)
T ss_pred             CcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccC
Confidence            4311      15678899999999999999999999999999999988889999999999999999 8888999999999


Q ss_pred             HHHHHHHHHHhhhcCC-CCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcC-CCHHHHHHHHHHHhcC-----C--CccHH
Q 037205          251 YHHALELFSRHAFKRN-HPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYK-REKEVWESAINKLQRI-----L--YPSIL  321 (439)
Q Consensus       251 ~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~-~~~~~w~~~l~~l~~~-----~--~~~i~  321 (439)
                      ++|||+||++.+|... ...+...+++++++++|+|+|||+.++|..|+. .++.+|+.+.+.+...     +  .+.+.
T Consensus       319 ~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~  398 (889)
T KOG4658|consen  319 PEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL  398 (889)
T ss_pred             ccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence            9999999999998764 333458999999999999999999999999998 4677999999988664     1  35689


Q ss_pred             HHHHHhhcCCCHHhHHHHhcccccccc-------------cCCC------------chhHHHHHHhhCCceEEccC----
Q 037205          322 EVLKISYDGLDNKEKNIFLGVACFFQV-------------RIGF------------NLEIGVSVLVDKSLIVISNN----  372 (439)
Q Consensus       322 ~~l~~Sy~~L~~~~k~~fl~la~f~~~-------------~~~~------------~~~~~l~~L~~~sLi~~~~~----  372 (439)
                      .+|++||+.|+++.|.||+|||+||.+             ++|+            .+..++++|+++||+....+    
T Consensus       399 ~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~  478 (889)
T KOG4658|consen  399 PILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK  478 (889)
T ss_pred             HhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence            999999999999999999999999998             5553            25678999999999997642    


Q ss_pred             CeEEecHHHHHHHHHHHhh
Q 037205          373 NKITMHDLLQELGRDIVSQ  391 (439)
Q Consensus       373 ~~~~mHdlv~~~a~~i~~~  391 (439)
                      ..+.|||+||+||..++++
T Consensus       479 ~~~kmHDvvRe~al~ias~  497 (889)
T KOG4658|consen  479 ETVKMHDVVREMALWIASD  497 (889)
T ss_pred             eEEEeeHHHHHHHHHHhcc
Confidence            4699999999999999993

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=100.00  E-value=1.8e-37  Score=299.18  Aligned_cols=249  Identities=29%  Similarity=0.437  Sum_probs=191.4

Q ss_pred             ccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----------HHHHHHHHHhcCCCC
Q 037205          119 VESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL----------LATKLISNLLKDENA  180 (439)
Q Consensus       119 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----------~~~~ll~~l~~~~~~  180 (439)
                      ||.++++|.+.|...+++.++|+|+||||+||||||.+++++...        |+          +...++..+......
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~   80 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS   80 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence            788999999999876688999999999999999999999988443        43          677788777766432


Q ss_pred             C----C---cHHHHHHHhccCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCC-CeEEEcCCCCHH
Q 037205          181 I----P---GIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGV-SKIYEMEALEYH  252 (439)
Q Consensus       181 ~----~---~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~-~~~~~l~~L~~~  252 (439)
                      .    +   ....+.+.|.++++||||||||+...|+.+...++.+..|++||||||+..++..++. ...|++++|+.+
T Consensus        81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~  160 (287)
T PF00931_consen   81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE  160 (287)
T ss_dssp             SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred             cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2    1   5688889999999999999999999998888877777789999999999988877654 678999999999


Q ss_pred             HHHHHHHHhhhcCC-CCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcC-CCHHHHHHHHHHHhcCC------CccHHHHH
Q 037205          253 HALELFSRHAFKRN-HPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYK-REKEVWESAINKLQRIL------YPSILEVL  324 (439)
Q Consensus       253 ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~------~~~i~~~l  324 (439)
                      ||++||.+.++... ...+...+.+++|++.|+|+||||+++|++|+. .+..+|+..++++....      ...+..++
T Consensus       161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l  240 (287)
T PF00931_consen  161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL  240 (287)
T ss_dssp             HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999997655 334456778999999999999999999999954 36788999998876543      36699999


Q ss_pred             HHhhcCCCHHhHHHHhcccccccccCCCchhHHHHHHhhCCceE
Q 037205          325 KISYDGLDNKEKNIFLGVACFFQVRIGFNLEIGVSVLVDKSLIV  368 (439)
Q Consensus       325 ~~Sy~~L~~~~k~~fl~la~f~~~~~~~~~~~~l~~L~~~sLi~  368 (439)
                      .+||+.|+++.|.||++||+||.+ ..+..+..+.....-++|.
T Consensus       241 ~~s~~~L~~~~~~~f~~L~~f~~~-~~i~~~~li~lW~~e~~i~  283 (287)
T PF00931_consen  241 ELSYDSLPDELRRCFLYLSIFPEG-VPIPRERLIRLWVAEGFIS  283 (287)
T ss_dssp             HHHHHSSHTCCHHHHHHGGGSGTT-S-EEHHHHHHHHTT-HHTC
T ss_pred             eechhcCCccHHHHHhhCcCCCCC-ceECHHHHHHHHHHCCCCc
Confidence            999999999999999999999984 2233444555555555543

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03194 putative disease resistance protein; Provisional

Probab=99.80  E-value=8.6e-20  Score=158.63  Aligned_cols=84  Identities=26%  Similarity=0.384  Sum_probs=72.2

Q ss_pred             cccchHHHHHHHHhhhhcCCCEEEEEeeecCccccccc-cccchhhHHHHHHHhhhchHHHHHHHHHHHHHhcccccccc
Q 037205            4 CSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQ-TGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYR   82 (439)
Q Consensus         4 ~~~~~~~el~~i~~~~~~~~~~vlPiFy~v~ps~vr~q-~~~~~~~~~~~~~~~~~~~e~v~~W~~aL~~~~~~~g~~~~   82 (439)
                      .|+||++||++|++|+    ..|+||||+|||+|||+| .|.+             ..+++++||+||+++++++|++++
T Consensus        94 ~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~-------------~~e~v~~Wr~AL~~va~l~G~~~~  156 (187)
T PLN03194         94 ESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGTC-------------PDEEIRRFNWALEEAKYTVGLTFD  156 (187)
T ss_pred             cchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCCC-------------CHHHHHHHHHHHHHHhccccccCC
Confidence            6999999999999984    389999999999999997 4431             246899999999999999999876


Q ss_pred             CC-cchhhHHHHHHHhhhhcccc
Q 037205           83 SI-RPESELINEVVNHILKRLLE  104 (439)
Q Consensus        83 ~~-~~e~~~i~~iv~~i~~~l~~  104 (439)
                      .. .+|+++|++|+..|.+.|..
T Consensus       157 ~~~~~e~e~i~~iv~~v~k~l~~  179 (187)
T PLN03194        157 SLKGNWSEVVTMASDAVIKNLIE  179 (187)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Confidence            42 33999999999999988754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.60  E-value=7.2e-14  Score=155.43  Aligned_cols=268  Identities=16%  Similarity=0.172  Sum_probs=170.7

Q ss_pred             CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----------HHHHHHHHHhcC
Q 037205          111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----------LATKLISNLLKD  177 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----------~~~~ll~~l~~~  177 (439)
                      .....+|-|..-++.+..     ....+++.|+|++|.||||++.++......  |+           +...++..+...
T Consensus        11 ~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~   85 (903)
T PRK04841         11 VRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQA   85 (903)
T ss_pred             CCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHh
Confidence            445678888866555543     346789999999999999999998764422  33           223344444211


Q ss_pred             CC-------------C-CC---cHHHHHHHhc--cCCceEEecCCCCHH------HHHHHhcCCCCCCCCcEEEEEeCch
Q 037205          178 EN-------------A-IP---GIDLNFRRLS--RMKVLIFFYDVTCFS------QLESLMGSLDWLTPVSRIILTTRNK  232 (439)
Q Consensus       178 ~~-------------~-~~---~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IiiTTR~~  232 (439)
                      ..             . ..   ....+...+.  +.+++|||||+...+      .+..+...   ..++.++|||||..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~~lv~~sR~~  162 (903)
T PRK04841         86 TNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENLTLVVLSRNL  162 (903)
T ss_pred             cCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCeEEEEEeCCC
Confidence            11             0 01   1222222332  578999999996532      23344433   24667888999974


Q ss_pred             HHHH--hcC-CCeEEEcC----CCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHH
Q 037205          233 QVLR--NWG-VSKIYEME----ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVW  305 (439)
Q Consensus       233 ~v~~--~~~-~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w  305 (439)
                      .-..  ... .....++.    +|+.+|+.+||.......  .   ..+.+.++.+.|+|+|+++..++..+...... .
T Consensus       163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~  236 (903)
T PRK04841        163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP--I---EAAESSRLCDDVEGWATALQLIALSARQNNSS-L  236 (903)
T ss_pred             CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC--C---CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-h
Confidence            2211  111 12344555    899999999997654221  1   24567899999999999999998877543210 0


Q ss_pred             HHHHHHHhcCCCccHHHHHHHh-hcCCCHHhHHHHhcccccccc--------cCCCchhHHHHHHhhCCceEEc-c-C-C
Q 037205          306 ESAINKLQRILYPSILEVLKIS-YDGLDNKEKNIFLGVACFFQV--------RIGFNLEIGVSVLVDKSLIVIS-N-N-N  373 (439)
Q Consensus       306 ~~~l~~l~~~~~~~i~~~l~~S-y~~L~~~~k~~fl~la~f~~~--------~~~~~~~~~l~~L~~~sLi~~~-~-~-~  373 (439)
                      ......+...+...+...+.-. ++.||++.+.+++.+|+++.-        ...-.....+..|.+.+++... + + .
T Consensus       237 ~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~  316 (903)
T PRK04841        237 HDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGE  316 (903)
T ss_pred             hhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCC
Confidence            1111222222234566655444 889999999999999998753        1222456789999999997542 2 2 3


Q ss_pred             eEEecHHHHHHHHHHHhhh
Q 037205          374 KITMHDLLQELGRDIVSQE  392 (439)
Q Consensus       374 ~~~mHdlv~~~a~~i~~~e  392 (439)
                      +|+.|+|++++.++....+
T Consensus       317 ~yr~H~L~r~~l~~~l~~~  335 (903)
T PRK04841        317 WFRYHPLFASFLRHRCQWE  335 (903)
T ss_pred             EEehhHHHHHHHHHHHHhc
Confidence            6999999999999987554

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.29  E-value=4e-10  Score=113.63  Aligned_cols=231  Identities=16%  Similarity=0.178  Sum_probs=139.2

Q ss_pred             cCCCCCCCCcccccchHHHHHhhhccC--CCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----------H
Q 037205          107 FRPRDNKSQLVGVESRVEEIESLLSVE--SKDVYALGIWGIGGIGKTTIARATFDKISR--------YL----------L  166 (439)
Q Consensus       107 ~~p~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----------~  166 (439)
                      +.|...+..++||+.++++|...+...  ....+.+.|+|++|+|||++++.+++.+..        ++          +
T Consensus        23 l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~  102 (394)
T PRK00411         23 LEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAI  102 (394)
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHH
Confidence            344467788999999999999998532  334566789999999999999999988743        11          4


Q ss_pred             HHHHHHHHhcCCC---CCC---cHHHHHHHhc--cCCceEEecCCCCHH------HHHHHhcCCCCCCCCcE--EEEEeC
Q 037205          167 ATKLISNLLKDEN---AIP---GIDLNFRRLS--RMKVLIFFYDVTCFS------QLESLMGSLDWLTPVSR--IILTTR  230 (439)
Q Consensus       167 ~~~ll~~l~~~~~---~~~---~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--IiiTTR  230 (439)
                      ...++.++.....   ..+   ....+.+.+.  +++.+||||+++...      .+..+....... ++++  +|.++.
T Consensus       103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~  181 (394)
T PRK00411        103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISS  181 (394)
T ss_pred             HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEEC
Confidence            5566666654221   111   2344455554  356899999997643      344544332211 2333  555655


Q ss_pred             chHHHHhcC-------CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHh----CCCcHHHHHHHHhh--
Q 037205          231 NKQVLRNWG-------VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYV----QGVPLALKVLGCFL--  297 (439)
Q Consensus       231 ~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~----~GlPLal~~~g~~L--  297 (439)
                      +..+.....       ....+.+++++.++..+++..++-....+..-..+.++.+++.+    |..+.|+.++-...  
T Consensus       182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~  261 (394)
T PRK00411        182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI  261 (394)
T ss_pred             CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            443322211       12467899999999999998776321111111123344444444    55777777764432  


Q ss_pred             ---cC---CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccccc
Q 037205          298 ---YK---REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACF  345 (439)
Q Consensus       298 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f  345 (439)
                         ++   -+.+....+++.+.       .....-.+..||..+|.++..++..
T Consensus       262 a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~  308 (394)
T PRK00411        262 AEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRL  308 (394)
T ss_pred             HHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence               11   24556666665541       2234556789999888877766633

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.29  E-value=6e-11  Score=115.38  Aligned_cols=238  Identities=17%  Similarity=0.173  Sum_probs=139.6

Q ss_pred             CCcccccchHHHHHhhhccC---CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHHHH
Q 037205          114 SQLVGVESRVEEIESLLSVE---SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLNFR  189 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l~~  189 (439)
                      .+|||++..++.|..++...   ......+.++|++|+|||+||+.+++.... +.         ............+..
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---------~~~~~~~~~~~~l~~   74 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---------ITSGPALEKPGDLAA   74 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---------EeccchhcCchhHHH
Confidence            46999999999999888631   233556889999999999999999887642 00         000000001111111


Q ss_pred             Hhc--cCCceEEecCCCCH--HHHHHHhcCCC-------------------CCCCCcEEEEEeCchHHHHhc--CCCeEE
Q 037205          190 RLS--RMKVLIFFYDVTCF--SQLESLMGSLD-------------------WLTPVSRIILTTRNKQVLRNW--GVSKIY  244 (439)
Q Consensus       190 ~l~--~~~~LlVlDdv~~~--~~~~~l~~~~~-------------------~~~~gs~IiiTTR~~~v~~~~--~~~~~~  244 (439)
                      .+.  +...+|++|+++..  ...+.|...+.                   ...+.+-|..||+...+....  .....+
T Consensus        75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~  154 (305)
T TIGR00635        75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIIL  154 (305)
T ss_pred             HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEE
Confidence            111  24567888888532  22222221110                   011234455677764433321  123567


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhc------C---CCHHHHHHHHHHHhcC
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLY------K---REKEVWESAINKLQRI  315 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~------~---~~~~~w~~~l~~l~~~  315 (439)
                      .+++++.++..+++.+.+......  -..+.+..+++.|+|.|-.+..++..+.      .   .+.+..+         
T Consensus       155 ~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~---------  223 (305)
T TIGR00635       155 RLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL---------  223 (305)
T ss_pred             EeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH---------
Confidence            899999999999999887533222  2256778999999999977655554321      0   0111111         


Q ss_pred             CCccHHHHHHHhhcCCCHHhHHHHh-cccccccc------------cCCCchhHHHH-HHhhCCceEEccCCe
Q 037205          316 LYPSILEVLKISYDGLDNKEKNIFL-GVACFFQV------------RIGFNLEIGVS-VLVDKSLIVISNNNK  374 (439)
Q Consensus       316 ~~~~i~~~l~~Sy~~L~~~~k~~fl-~la~f~~~------------~~~~~~~~~l~-~L~~~sLi~~~~~~~  374 (439)
                         .....+...|..|++..+..+. .++.+..+            .....++..++ .|++++||.....|+
T Consensus       224 ---~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~  293 (305)
T TIGR00635       224 ---KALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR  293 (305)
T ss_pred             ---HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence               1222356678889998887776 44556543            11223455577 699999998654444

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.29  E-value=4.2e-11  Score=111.17  Aligned_cols=173  Identities=19%  Similarity=0.262  Sum_probs=96.5

Q ss_pred             cccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HH---------HHHHH----------
Q 037205          116 LVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YL---------LATKL----------  170 (439)
Q Consensus       116 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~---------~~~~l----------  170 (439)
                      |+||+.++++|.+++..  +..+.+.|+|+.|+|||+|++.+.+....      |+         ....+          
T Consensus         1 F~gR~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l   78 (234)
T PF01637_consen    1 FFGREKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADEL   78 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred             CCCHHHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence            79999999999999873  34578899999999999999999988744      33         11111          


Q ss_pred             HHHHhcCCC--C------------CCcHHHHHHHhc--cCCceEEecCCCCHH-----------HHHHHhcCCCCCCCCc
Q 037205          171 ISNLLKDEN--A------------IPGIDLNFRRLS--RMKVLIFFYDVTCFS-----------QLESLMGSLDWLTPVS  223 (439)
Q Consensus       171 l~~l~~~~~--~------------~~~~~~l~~~l~--~~~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~gs  223 (439)
                      ...+.....  .            ......+.+.+.  +++++||+||+....           .+..++.......+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  158 (234)
T PF01637_consen   79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS  158 (234)
T ss_dssp             HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred             HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence            111111110  0            113344444444  345999999996544           1233333322223334


Q ss_pred             EEEEEeCchHHHHh--------cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHH
Q 037205          224 RIILTTRNKQVLRN--------WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKV  292 (439)
Q Consensus       224 ~IiiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~  292 (439)
                       +|+++-.......        .+....+.+++|+.+++++++....-..... +...+..++++..+||+|..|..
T Consensus       159 -~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~  233 (234)
T PF01637_consen  159 -IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE  233 (234)
T ss_dssp             -EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred             -EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence             4444444444333        2333458999999999999998865332111 12356679999999999998865

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.25  E-value=2.1e-10  Score=119.67  Aligned_cols=266  Identities=14%  Similarity=0.156  Sum_probs=173.0

Q ss_pred             CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH-----------HHHHHHHHH
Q 037205          111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL-----------LATKLISNL  174 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~-----------~~~~ll~~l  174 (439)
                      ..+.+.|-|..-++.+..     ..+.|.+.|..++|.|||||+.++......     |+           +...++..+
T Consensus        16 ~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al   90 (894)
T COG2909          16 VRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAAL   90 (894)
T ss_pred             CCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHH
Confidence            446777888766665554     346899999999999999999999764333     54           445555555


Q ss_pred             hcCCCCC--------------C---cHHHHHHHhc--cCCceEEecCCCCH------HHHHHHhcCCCCCCCCcEEEEEe
Q 037205          175 LKDENAI--------------P---GIDLNFRRLS--RMKVLIFFYDVTCF------SQLESLMGSLDWLTPVSRIILTT  229 (439)
Q Consensus       175 ~~~~~~~--------------~---~~~~l~~~l~--~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTT  229 (439)
                      ....+..              +   ..+.+...+.  .++..+||||..-.      .-++-|....   .++-..|+||
T Consensus        91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv~S  167 (894)
T COG2909          91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVVTS  167 (894)
T ss_pred             HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEEEe
Confidence            4333211              1   2223333333  36889999999422      2245555544   3688999999


Q ss_pred             CchHHHHhcC---CCeEEEc----CCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCC-C
Q 037205          230 RNKQVLRNWG---VSKIYEM----EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKR-E  301 (439)
Q Consensus       230 R~~~v~~~~~---~~~~~~l----~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-~  301 (439)
                      |+..-+....   .+...++    -.++.+|+.++|....   ..+  -....++.+.+.++|.+-|+..++=.+++. +
T Consensus       168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l~--Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~  242 (894)
T COG2909         168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---SLP--LDAADLKALYDRTEGWAAALQLIALALRNNTS  242 (894)
T ss_pred             ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---CCC--CChHHHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence            9774332211   1122333    2488999999997764   111  224568899999999999999999888842 2


Q ss_pred             HHHHHHHHHHHhcCCCccHHH-HHHHhhcCCCHHhHHHHhcccccccc--------cCCCchhHHHHHHhhCCceEEc--
Q 037205          302 KEVWESAINKLQRILYPSILE-VLKISYDGLDNKEKNIFLGVACFFQV--------RIGFNLEIGVSVLVDKSLIVIS--  370 (439)
Q Consensus       302 ~~~w~~~l~~l~~~~~~~i~~-~l~~Sy~~L~~~~k~~fl~la~f~~~--------~~~~~~~~~l~~L~~~sLi~~~--  370 (439)
                      .+.-...+.   .. ...+.+ ...--++.||++.|.+++-+|+++.-        .........+++|.+++|+-..  
T Consensus       243 ~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ld  318 (894)
T COG2909         243 AEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLD  318 (894)
T ss_pred             HHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeec
Confidence            222111111   00 112222 12334689999999999999998764        2223455679999999998742  


Q ss_pred             -cCCeEEecHHHHHHHHHHHhhhc
Q 037205          371 -NNNKITMHDLLQELGRDIVSQES  393 (439)
Q Consensus       371 -~~~~~~mHdlv~~~a~~i~~~e~  393 (439)
                       +++.|+.|.|+.+|.+...+.+.
T Consensus       319 d~~~WfryH~LFaeFL~~r~~~~~  342 (894)
T COG2909         319 DEGQWFRYHHLFAEFLRQRLQREL  342 (894)
T ss_pred             CCCceeehhHHHHHHHHhhhcccc
Confidence             24579999999999999888764

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.22  E-value=9.9e-11  Score=115.00  Aligned_cols=245  Identities=16%  Similarity=0.132  Sum_probs=142.9

Q ss_pred             CCCCcccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHH
Q 037205          112 NKSQLVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLN  187 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l  187 (439)
                      ...+|+|++..++.+..++..   .....+.+.|+|++|+||||||+.+++.... +.         ............+
T Consensus        23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---------~~~~~~~~~~~~l   93 (328)
T PRK00080         23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---------ITSGPALEKPGDL   93 (328)
T ss_pred             CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---------EEecccccChHHH
Confidence            346799999999999888753   2334567889999999999999999887643 00         0000001111111


Q ss_pred             HHHhc--cCCceEEecCCCCHH--HHHHHhcCCC-------------------CCCCCcEEEEEeCchHHHHhc--CCCe
Q 037205          188 FRRLS--RMKVLIFFYDVTCFS--QLESLMGSLD-------------------WLTPVSRIILTTRNKQVLRNW--GVSK  242 (439)
Q Consensus       188 ~~~l~--~~~~LlVlDdv~~~~--~~~~l~~~~~-------------------~~~~gs~IiiTTR~~~v~~~~--~~~~  242 (439)
                      ...+.  ...-+|++|+++...  ..+.+...+.                   ...+.+-|..||+...+....  ....
T Consensus        94 ~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~  173 (328)
T PRK00080         94 AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGI  173 (328)
T ss_pred             HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCe
Confidence            11111  245678889886432  1111111100                   001234455677744332221  1235


Q ss_pred             EEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHHHhcCCC---cc
Q 037205          243 IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILY---PS  319 (439)
Q Consensus       243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~~~---~~  319 (439)
                      .+++++++.++..+++.+.+......  -..+.+..|++.|+|.|-.+..+...+.     .|..... -.....   ..
T Consensus       174 ~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~-~~~I~~~~v~~  245 (328)
T PRK00080        174 VQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG-DGVITKEIADK  245 (328)
T ss_pred             eeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC-CCCCCHHHHHH
Confidence            68999999999999999887543322  2256789999999999975555544321     1111100 000011   22


Q ss_pred             HHHHHHHhhcCCCHHhHHHHh-cccccccc-----------c-CCCchhHHHH-HHhhCCceEEccCC
Q 037205          320 ILEVLKISYDGLDNKEKNIFL-GVACFFQV-----------R-IGFNLEIGVS-VLVDKSLIVISNNN  373 (439)
Q Consensus       320 i~~~l~~Sy~~L~~~~k~~fl-~la~f~~~-----------~-~~~~~~~~l~-~L~~~sLi~~~~~~  373 (439)
                      ....+...+..|++..+..+. .+..|..+           + .....+..++ .|++.+||+....|
T Consensus       246 ~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~g  313 (328)
T PRK00080        246 ALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRG  313 (328)
T ss_pred             HHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCch
Confidence            334456677889998888886 55666654           1 1123445677 89999999865444

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.21  E-value=2.4e-09  Score=106.84  Aligned_cols=255  Identities=16%  Similarity=0.181  Sum_probs=147.9

Q ss_pred             CCCCCCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------H----------
Q 037205          109 PRDNKSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISR------------Y----------  164 (439)
Q Consensus       109 p~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f----------  164 (439)
                      |...+..++||+.++++|...|..  .....+.+.|+|++|+|||++++.+++.+..            |          
T Consensus        10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~   89 (365)
T TIGR02928        10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY   89 (365)
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence            346677899999999999999864  2234567899999999999999999986531            1          


Q ss_pred             HHHHHHHHHHhc--CC-C--CCC---cHHHHHHHhc--cCCceEEecCCCCHH-----HHHHHhcCC--CCC-CCCcEEE
Q 037205          165 LLATKLISNLLK--DE-N--AIP---GIDLNFRRLS--RMKVLIFFYDVTCFS-----QLESLMGSL--DWL-TPVSRII  226 (439)
Q Consensus       165 ~~~~~ll~~l~~--~~-~--~~~---~~~~l~~~l~--~~~~LlVlDdv~~~~-----~~~~l~~~~--~~~-~~gs~Ii  226 (439)
                      .+...++.++..  .. +  ..+   ....+.+.+.  +++++||||+++...     .+..+....  ... +....+|
T Consensus        90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI  169 (365)
T TIGR02928        90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI  169 (365)
T ss_pred             HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence            155566666642  11 1  111   2234444443  467899999997661     133333221  111 1223445


Q ss_pred             EEeCchHHHHhcC-------CCeEEEcCCCCHHHHHHHHHHhhh---cCCCCCcchHHHHHHHHHHhCCCcHH-HHHHHH
Q 037205          227 LTTRNKQVLRNWG-------VSKIYEMEALEYHHALELFSRHAF---KRNHPDVGYEKLSSNVMKYVQGVPLA-LKVLGC  295 (439)
Q Consensus       227 iTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~~g~  295 (439)
                      .+|........+.       ....+.+++++.++..+++..++-   ......++..+.+..++..+.|.|-. +.++-.
T Consensus       170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~  249 (365)
T TIGR02928       170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV  249 (365)
T ss_pred             EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            5554443222111       124678999999999999988763   22222222334455666677788744 333322


Q ss_pred             hh----c-C---CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccccccc-c------------------
Q 037205          296 FL----Y-K---REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ-V------------------  348 (439)
Q Consensus       296 ~L----~-~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~-~------------------  348 (439)
                      ..    . +   -+.+..+.+.+.+.       .....-++..||.+++.++..++.... +                  
T Consensus       250 a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~  322 (365)
T TIGR02928       250 AGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE  322 (365)
T ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence            21    1 1   24455555555431       233445667888888877666653222 1                  


Q ss_pred             cCCC------chhHHHHHHhhCCceEEc
Q 037205          349 RIGF------NLEIGVSVLVDKSLIVIS  370 (439)
Q Consensus       349 ~~~~------~~~~~l~~L~~~sLi~~~  370 (439)
                      ..|.      ....++..|...|||...
T Consensus       323 ~~~~~~~~~~~~~~~l~~l~~~gli~~~  350 (365)
T TIGR02928       323 DIGVDPLTQRRISDLLNELDMLGLVEAE  350 (365)
T ss_pred             hcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence            0111      123468888899999864

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.13  E-value=4.7e-09  Score=100.10  Aligned_cols=160  Identities=15%  Similarity=0.135  Sum_probs=97.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH------HH---------HHHHHHHHHhcCCCCCC---cHHHHHHH-----hcc
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR------YL---------LATKLISNLLKDENAIP---GIDLNFRR-----LSR  193 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~---------~~~~ll~~l~~~~~~~~---~~~~l~~~-----l~~  193 (439)
                      ...+.|+|++|+|||||++.+++....      ++         +...+...+........   ....+...     ..+
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~  122 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG  122 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence            457899999999999999999988652      11         23333333322211221   12222222     256


Q ss_pred             CCceEEecCCCCHH--HHHHHh---cCCCCCCCCcEEEEEeCchHHHHhc----------CCCeEEEcCCCCHHHHHHHH
Q 037205          194 MKVLIFFYDVTCFS--QLESLM---GSLDWLTPVSRIILTTRNKQVLRNW----------GVSKIYEMEALEYHHALELF  258 (439)
Q Consensus       194 ~~~LlVlDdv~~~~--~~~~l~---~~~~~~~~gs~IiiTTR~~~v~~~~----------~~~~~~~l~~L~~~ea~~Lf  258 (439)
                      ++.+||+||++...  .++.+.   ...........|++|.... .....          .....+.+++++.+|..+++
T Consensus       123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l  201 (269)
T TIGR03015       123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYI  201 (269)
T ss_pred             CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence            78899999997643  344433   2211112233455555432 21111          12346789999999999998


Q ss_pred             HHhhhcCCC--CCcchHHHHHHHHHHhCCCcHHHHHHHHhh
Q 037205          259 SRHAFKRNH--PDVGYEKLSSNVMKYVQGVPLALKVLGCFL  297 (439)
Q Consensus       259 ~~~a~~~~~--~~~~~~~~~~~i~~~~~GlPLal~~~g~~L  297 (439)
                      ...+.....  ...-..+..+.|++.++|.|..+..++..+
T Consensus       202 ~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       202 EHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             HHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence            876632221  112235789999999999999999998876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.06  E-value=1.3e-09  Score=105.15  Aligned_cols=177  Identities=18%  Similarity=0.252  Sum_probs=105.1

Q ss_pred             hcccccccCCCCCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCC
Q 037205          100 KRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDE  178 (439)
Q Consensus       100 ~~l~~~~~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~  178 (439)
                      .++.|....-.....+++|-+..+..+.+     .+.+....+||+||+||||||+.+...... |.-    ++.+....
T Consensus        16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~----~sAv~~gv   86 (436)
T COG2256          16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEA----LSAVTSGV   86 (436)
T ss_pred             HHhCCCCHHHhcChHhhhCCCchHHHHHh-----cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEE----eccccccH
Confidence            34444443222344556666665555554     456777889999999999999998876543 210    00000000


Q ss_pred             CCCC-cHHHH-HHHhccCCceEEecCCC--CHHHHHHHhcCCCCCCCCcEEEE--EeCchHHHH---hcCCCeEEEcCCC
Q 037205          179 NAIP-GIDLN-FRRLSRMKVLIFFYDVT--CFSQLESLMGSLDWLTPVSRIIL--TTRNKQVLR---NWGVSKIYEMEAL  249 (439)
Q Consensus       179 ~~~~-~~~~l-~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~---~~~~~~~~~l~~L  249 (439)
                      .++. ..+.- +....+++.+|++|.|.  +..|-+.|++...   +|.-|+|  ||.|+...-   ......++++++|
T Consensus        87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L  163 (436)
T COG2256          87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPL  163 (436)
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecC
Confidence            0000 11112 23344789999999995  5556677777765   5766665  777774421   1234578999999


Q ss_pred             CHHHHHHHHHHhhhcCC--CC---CcchHHHHHHHHHHhCCCcH
Q 037205          250 EYHHALELFSRHAFKRN--HP---DVGYEKLSSNVMKYVQGVPL  288 (439)
Q Consensus       250 ~~~ea~~Lf~~~a~~~~--~~---~~~~~~~~~~i~~~~~GlPL  288 (439)
                      +.++-.+++.+-+....  ..   ..-.++....++..++|---
T Consensus       164 ~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R  207 (436)
T COG2256         164 SSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR  207 (436)
T ss_pred             CHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence            99999999988432211  11   11124566677777777643

>COG3899 Predicted ATPase [General function prediction only]

Probab=98.98  E-value=8.8e-09  Score=112.42  Aligned_cols=292  Identities=15%  Similarity=0.185  Sum_probs=173.1

Q ss_pred             CcccccchHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH---------------------HH-HHHHHH
Q 037205          115 QLVGVESRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR---------------------YL-LATKLI  171 (439)
Q Consensus       115 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------------------f~-~~~~ll  171 (439)
                      .++||+.+++.|...+.. ......++.+.|.+|||||+|+++|...+..                     |+ ..+.+.
T Consensus         1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~   80 (849)
T COG3899           1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM   80 (849)
T ss_pred             CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence            379999999999998875 3344679999999999999999999877654                     11 111111


Q ss_pred             HHH-------------------h-----------------cCCC---CCC-----------cHHHHHHHh-ccCCceEEe
Q 037205          172 SNL-------------------L-----------------KDEN---AIP-----------GIDLNFRRL-SRMKVLIFF  200 (439)
Q Consensus       172 ~~l-------------------~-----------------~~~~---~~~-----------~~~~l~~~l-~~~~~LlVl  200 (439)
                      .++                   .                 +..+   ++.           ....+.... +.++.++|+
T Consensus        81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l  160 (849)
T COG3899          81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL  160 (849)
T ss_pred             HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence            111                   1                 1000   100           011112222 346999999


Q ss_pred             cCCCCHH-----HHHHHhcCCC--CC-CCCcEEEEEeCch--HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCc
Q 037205          201 YDVTCFS-----QLESLMGSLD--WL-TPVSRIILTTRNK--QVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDV  270 (439)
Q Consensus       201 Ddv~~~~-----~~~~l~~~~~--~~-~~gs~IiiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~  270 (439)
                      ||+...+     -++.++....  .+ .+..-.+.|.+..  .+.........+.|.||+..+...|..........   
T Consensus       161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~---  237 (849)
T COG3899         161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL---  237 (849)
T ss_pred             ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc---
Confidence            9994322     2444443332  00 0111222333322  12222234478999999999999998877632222   


Q ss_pred             chHHHHHHHHHHhCCCcHHHHHHHHhhcCC-------CHHHHHHHHHHHhcCCC-ccHHHHHHHhhcCCCHHhHHHHhcc
Q 037205          271 GYEKLSSNVMKYVQGVPLALKVLGCFLYKR-------EKEVWESAINKLQRILY-PSILEVLKISYDGLDNKEKNIFLGV  342 (439)
Q Consensus       271 ~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~Sy~~L~~~~k~~fl~l  342 (439)
                      ...+..+.|+++..|+|+.+..+-..+...       +...|..-...+...+. +.+...+..-.+.||...|+++...
T Consensus       238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A  317 (849)
T COG3899         238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA  317 (849)
T ss_pred             ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            236778999999999999999998888652       33445544444333221 2355568889999999999999999


Q ss_pred             cccccc---------cCCCch---hHHHHHHhhCCceEEcc--------CCeE---EecHHHHHHHHHHHhhhcCCCCCe
Q 037205          343 ACFFQV---------RIGFNL---EIGVSVLVDKSLIVISN--------NNKI---TMHDLLQELGRDIVSQESNDPGNH  399 (439)
Q Consensus       343 a~f~~~---------~~~~~~---~~~l~~L~~~sLi~~~~--------~~~~---~mHdlv~~~a~~i~~~e~~~~~~~  399 (439)
                      ||+.+.         .....+   ....+.|.. ++|....        ....   ..||++|+.|-....+.       
T Consensus       318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e-~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~-------  389 (849)
T COG3899         318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQE-GLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES-------  389 (849)
T ss_pred             HHhCccCCHHHHHHHHhhchHHHHHHHHHHhHh-hceeccccccccccccchhhHHhhHHHHHHHHhccCchh-------
Confidence            999875         111222   223344444 4444321        1112   57888888776554433       


Q ss_pred             eeccChhhHHHHHhhCcC
Q 037205          400 NWLWHHEDIYEVLTYNTA  417 (439)
Q Consensus       400 ~rl~~~~~~~~~l~~~~~  417 (439)
                      .|--.|..+...|.++..
T Consensus       390 ~rq~~H~~i~~lL~~~~~  407 (849)
T COG3899         390 QRQYLHLRIGQLLEQNIP  407 (849)
T ss_pred             hHHHHHHHHHHHHHHhCC
Confidence            222455566666655543

>PF05729 NACHT: NACHT domain

Probab=98.96  E-value=4.2e-09  Score=92.36  Aligned_cols=123  Identities=20%  Similarity=0.272  Sum_probs=77.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH------------HH---------HHHHHHHHHhcCCCCC-CcHH-HHH-HHhcc
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR------------YL---------LATKLISNLLKDENAI-PGID-LNF-RRLSR  193 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~---------~~~~ll~~l~~~~~~~-~~~~-~l~-~~l~~  193 (439)
                      |++.|+|.+|+||||+++.++.....            |.         ....+...+....... .... .+. .....
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~   80 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN   80 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence            57899999999999999999988765            11         0012222332222211 1111 111 22356


Q ss_pred             CCceEEecCCCCHHH-------------HHHHhcCCCCCCCCcEEEEEeCchHH---HHhcCCCeEEEcCCCCHHHHHHH
Q 037205          194 MKVLIFFYDVTCFSQ-------------LESLMGSLDWLTPVSRIILTTRNKQV---LRNWGVSKIYEMEALEYHHALEL  257 (439)
Q Consensus       194 ~~~LlVlDdv~~~~~-------------~~~l~~~~~~~~~gs~IiiTTR~~~v---~~~~~~~~~~~l~~L~~~ea~~L  257 (439)
                      ++++||||++++...             +..+...  ...++.+++||||....   .........+++.+|++++..++
T Consensus        81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  158 (166)
T PF05729_consen   81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY  158 (166)
T ss_pred             CceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence            899999999965432             2222222  12468999999997766   33334446899999999999998


Q ss_pred             HHHhh
Q 037205          258 FSRHA  262 (439)
Q Consensus       258 f~~~a  262 (439)
                      +.++.
T Consensus       159 ~~~~f  163 (166)
T PF05729_consen  159 LRKYF  163 (166)
T ss_pred             HHHHh
Confidence            87654

>PRK06893 DNA replication initiation factor; Validated

Probab=98.87  E-value=2.8e-08  Score=92.43  Aligned_cols=148  Identities=14%  Similarity=0.187  Sum_probs=90.6

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH---
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF---  206 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---  206 (439)
                      ..+.+.|||++|+|||+||+.+++....      |+.....          ......+.+.+. +.-+|+|||++..   
T Consensus        38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~----------~~~~~~~~~~~~-~~dlLilDDi~~~~~~  106 (229)
T PRK06893         38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS----------QYFSPAVLENLE-QQDLVCLDDLQAVIGN  106 (229)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh----------hhhhHHHHhhcc-cCCEEEEeChhhhcCC
Confidence            3467899999999999999999988642      2211100          000111222222 3358999999753   


Q ss_pred             HHHH-HHhcCCCCC-CCCcEEEE-EeCc---------hHHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHH
Q 037205          207 SQLE-SLMGSLDWL-TPVSRIIL-TTRN---------KQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEK  274 (439)
Q Consensus       207 ~~~~-~l~~~~~~~-~~gs~Iii-TTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~  274 (439)
                      ..|+ .+...+... ..|+.+|+ |+..         +.+...++....+++++++.++.++++.+.+.......  .++
T Consensus       107 ~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l--~~~  184 (229)
T PRK06893        107 EEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL--SDE  184 (229)
T ss_pred             hHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC--CHH
Confidence            2233 222222111 23555554 5543         34555555567899999999999999999886544222  267


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHh
Q 037205          275 LSSNVMKYVQGVPLALKVLGCF  296 (439)
Q Consensus       275 ~~~~i~~~~~GlPLal~~~g~~  296 (439)
                      ...-+++.+.|..-++..+-..
T Consensus       185 v~~~L~~~~~~d~r~l~~~l~~  206 (229)
T PRK06893        185 VANFLLKRLDRDMHTLFDALDL  206 (229)
T ss_pred             HHHHHHHhccCCHHHHHHHHHH
Confidence            7888888888777666544443

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.85  E-value=4.1e-08  Score=99.52  Aligned_cols=168  Identities=16%  Similarity=0.248  Sum_probs=102.3

Q ss_pred             CCcccccchHHH---HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCC----cHH
Q 037205          114 SQLVGVESRVEE---IESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIP----GID  185 (439)
Q Consensus       114 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~----~~~  185 (439)
                      .++||.+..+..   +.+++.  ......+.|+|++|+||||||+.+++.... |+..       ........    ..+
T Consensus        12 ~d~vGq~~~v~~~~~L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l-------~a~~~~~~~ir~ii~   82 (413)
T PRK13342         12 DEVVGQEHLLGPGKPLRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEAL-------SAVTSGVKDLREVIE   82 (413)
T ss_pred             HHhcCcHHHhCcchHHHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE-------ecccccHHHHHHHHH
Confidence            568998877666   777765  334567889999999999999999877543 2200       00000000    111


Q ss_pred             HHHHH-hccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEE--EeCchHHH---HhcCCCeEEEcCCCCHHHHHHH
Q 037205          186 LNFRR-LSRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIIL--TTRNKQVL---RNWGVSKIYEMEALEYHHALEL  257 (439)
Q Consensus       186 ~l~~~-l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~---~~~~~~~~~~l~~L~~~ea~~L  257 (439)
                      ..... ..+++.+|++|+++..  .+.+.|+..+.   .|..+++  ||.++...   ........+.+.+++.++...+
T Consensus        83 ~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~l  159 (413)
T PRK13342         83 EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQL  159 (413)
T ss_pred             HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHH
Confidence            11111 1347789999999754  45566665544   3444444  34444211   1112336789999999999999


Q ss_pred             HHHhhhcCCCCC-cchHHHHHHHHHHhCCCcHHHHHH
Q 037205          258 FSRHAFKRNHPD-VGYEKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       258 f~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal~~~  293 (439)
                      +.+.+....... .-..+....+++.|+|.|..+..+
T Consensus       160 L~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~  196 (413)
T PRK13342        160 LKRALEDKERGLVELDDEALDALARLANGDARRALNL  196 (413)
T ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence            988653211111 223567888999999998776443

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.80  E-value=8.4e-08  Score=88.98  Aligned_cols=168  Identities=15%  Similarity=0.186  Sum_probs=99.5

Q ss_pred             CCccc--ccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHH
Q 037205          114 SQLVG--VESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGID  185 (439)
Q Consensus       114 ~~~vG--r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~  185 (439)
                      .+|++  .+..++.+.+++.  ....+.+.|+|.+|+|||+||+.+++....      |+....+....          .
T Consensus        15 ~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~----------~   82 (226)
T TIGR03420        15 DNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD----------P   82 (226)
T ss_pred             cCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH----------H
Confidence            44553  3446677777654  234568899999999999999999887642      11111111100          1


Q ss_pred             HHHHHhccCCceEEecCCCCHH---H-HHHHhcCCCC-CCCCcEEEEEeCchH---------HHHhcCCCeEEEcCCCCH
Q 037205          186 LNFRRLSRMKVLIFFYDVTCFS---Q-LESLMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEMEALEY  251 (439)
Q Consensus       186 ~l~~~l~~~~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~  251 (439)
                      .+...+. +.-+|||||++...   . .+.+...+.. ...+.++|+||+...         +...+.....+++++++.
T Consensus        83 ~~~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~  161 (226)
T TIGR03420        83 EVLEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSD  161 (226)
T ss_pred             HHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCH
Confidence            1112222 23489999996432   1 2333322211 123457888887432         222222246789999999


Q ss_pred             HHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHh
Q 037205          252 HHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCF  296 (439)
Q Consensus       252 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~  296 (439)
                      ++...++...+-.....  -..+....+++.+.|+|..+..+-..
T Consensus       162 ~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~~  204 (226)
T TIGR03420       162 EEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLDA  204 (226)
T ss_pred             HHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence            99999988765332222  12566788888899999887766444

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>COG3903 Predicted ATPase [General function prediction only]

Probab=98.75  E-value=6.3e-09  Score=101.16  Aligned_cols=253  Identities=18%  Similarity=0.235  Sum_probs=167.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH-------HH----------HHHHHHHHHhcCCC-CCCcHHHHHHHhccCCce
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR-------YL----------LATKLISNLLKDEN-AIPGIDLNFRRLSRMKVL  197 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~----------~~~~ll~~l~~~~~-~~~~~~~l~~~l~~~~~L  197 (439)
                      ..+.+.++|.|||||||++-++.. ...       |+          +...+...+.-... .......+.....+++.+
T Consensus        13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~l   91 (414)
T COG3903          13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRAL   91 (414)
T ss_pred             hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhHH
Confidence            468899999999999999999888 433       22          11111111111111 112455677788899999


Q ss_pred             EEecCCCCHH-HHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEcCCCCHH-HHHHHHHHhhhcCC---CCCcch
Q 037205          198 IFFYDVTCFS-QLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYH-HALELFSRHAFKRN---HPDVGY  272 (439)
Q Consensus       198 lVlDdv~~~~-~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~---~~~~~~  272 (439)
                      +|+||..... +...+...+....+.-.|+.|+|.....   .....+.++.|+.. ++.++|...+....   ......
T Consensus        92 lvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~  168 (414)
T COG3903          92 LVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDN  168 (414)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeecCCc
Confidence            9999996653 2333333333344566788999965432   23566788888876 78999887663322   222334


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHH----HhcC------CCccHHHHHHHhhcCCCHHhHHHHhcc
Q 037205          273 EKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINK----LQRI------LYPSILEVLKISYDGLDNKEKNIFLGV  342 (439)
Q Consensus       273 ~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~Sy~~L~~~~k~~fl~l  342 (439)
                      .....+|.+...|.|++|...++..+.....+-...++.    +..-      ........+..||.-|...++-.|..+
T Consensus       169 ~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rL  248 (414)
T COG3903         169 AAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRL  248 (414)
T ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcch
Confidence            677899999999999999999999988766554444432    2221      124577889999999999999999999


Q ss_pred             cccccc---------c-------CCCchhHHHHHHhhCCceEEcc---CCeEEecHHHHHHHHHHHhhh
Q 037205          343 ACFFQV---------R-------IGFNLEIGVSVLVDKSLIVISN---NNKITMHDLLQELGRDIVSQE  392 (439)
Q Consensus       343 a~f~~~---------~-------~~~~~~~~l~~L~~~sLi~~~~---~~~~~mHdlv~~~a~~i~~~e  392 (439)
                      +.|...         +       ..|.....+..|+++|++...+   .-+|+.-+-++.|+.....+.
T Consensus       249 a~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~  317 (414)
T COG3903         249 AVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS  317 (414)
T ss_pred             hhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            888765         1       2233445678899999998653   223666666666666655543

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.71  E-value=4e-07  Score=95.78  Aligned_cols=178  Identities=17%  Similarity=0.156  Sum_probs=111.5

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--HHHHHHHHHhcCC-C---CC-
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL--LATKLISNLLKDE-N---AI-  181 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--~~~~ll~~l~~~~-~---~~-  181 (439)
                      .++||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+..     ..  -.-.....+.... .   .+ 
T Consensus        16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEID   94 (830)
T PRK07003         16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMD   94 (830)
T ss_pred             HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence            679999999999999887332 2456679999999999999988876531     00  0000011111100 0   11 


Q ss_pred             ----CcHHHHHHHhc--------cCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCchHHH-Hh-cCCCeEEE
Q 037205          182 ----PGIDLNFRRLS--------RMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQVL-RN-WGVSKIYE  245 (439)
Q Consensus       182 ----~~~~~l~~~l~--------~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-~~~~~~~~  245 (439)
                          ..++.+++.+.        ++.-++|||+++...  .++.|+..+.......++|+||.+..-. .. ......++
T Consensus        95 Aas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~  174 (830)
T PRK07003         95 AASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFN  174 (830)
T ss_pred             ccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEe
Confidence                12333333322        345588899997654  3666766655445677888877765432 22 12346899


Q ss_pred             cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc-HHHHHHH
Q 037205          246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP-LALKVLG  294 (439)
Q Consensus       246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g  294 (439)
                      +..++.++..+.+.+.+.......  ..+....|++.++|.. -|+.++-
T Consensus       175 Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsLLd  222 (830)
T PRK07003        175 LKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSLTD  222 (830)
T ss_pred             cCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence            999999999999988764433222  2566788999998865 4555543

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.71  E-value=1.6e-07  Score=85.25  Aligned_cols=174  Identities=18%  Similarity=0.197  Sum_probs=99.2

Q ss_pred             CCCcccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHH---
Q 037205          113 KSQLVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGID---  185 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~---  185 (439)
                      -.+|||.+.-+..+.-++..   ..+....+.+||+||+||||||..+++.... |.        ... .+.++...   
T Consensus        23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~--------~~s-g~~i~k~~dl~   93 (233)
T PF05496_consen   23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK--------ITS-GPAIEKAGDLA   93 (233)
T ss_dssp             CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE--------EEE-CCC--SCHHHH
T ss_pred             HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE--------ecc-chhhhhHHHHH
Confidence            47899999988887766543   2345778999999999999999999988763 10        001 11122112   


Q ss_pred             HHHHHhccCCceEEecCCCCH--HHHHHHhcCCCCC--------CCC-----------cEEEEEeCchHHHHhcC--CCe
Q 037205          186 LNFRRLSRMKVLIFFYDVTCF--SQLESLMGSLDWL--------TPV-----------SRIILTTRNKQVLRNWG--VSK  242 (439)
Q Consensus       186 ~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~~g-----------s~IiiTTR~~~v~~~~~--~~~  242 (439)
                      .+...++ ++-+|.+|++...  .+-+.|.+....+        +++           +-|=.|||...+...+.  ..-
T Consensus        94 ~il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi  172 (233)
T PF05496_consen   94 AILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGI  172 (233)
T ss_dssp             HHHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSE
T ss_pred             HHHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcce
Confidence            2222333 4567888999643  3334444332211        222           23447888765554443  234


Q ss_pred             EEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhc
Q 037205          243 IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLY  298 (439)
Q Consensus       243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~  298 (439)
                      ..+++..+.+|-.++..+.+..-...  -.++.+.+|++.+.|-|--..-+-...+
T Consensus       173 ~~~l~~Y~~~el~~Iv~r~a~~l~i~--i~~~~~~~Ia~rsrGtPRiAnrll~rvr  226 (233)
T PF05496_consen  173 VLRLEFYSEEELAKIVKRSARILNIE--IDEDAAEEIARRSRGTPRIANRLLRRVR  226 (233)
T ss_dssp             EEE----THHHHHHHHHHCCHCTT-E--E-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred             ecchhcCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            55899999999999998877332222  2367899999999999976555444443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.70  E-value=5e-08  Score=97.27  Aligned_cols=173  Identities=18%  Similarity=0.293  Sum_probs=102.1

Q ss_pred             CCCCCcccccchHHHHHhhhccC-----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhc
Q 037205          111 DNKSQLVGVESRVEEIESLLSVE-----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLK  176 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~  176 (439)
                      ....++.|++..+++|.+.+...           -...+-+.|+|++|+|||+||+.+++.... |+  ....+.....+
T Consensus       119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g  198 (364)
T TIGR01242       119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIG  198 (364)
T ss_pred             CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhh
Confidence            34467899999999998876421           123456899999999999999999987654 32  11111111111


Q ss_pred             CCCCCCcHHHHHHH-hccCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHHH--
Q 037205          177 DENAIPGIDLNFRR-LSRMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQVL--  235 (439)
Q Consensus       177 ~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v~--  235 (439)
                      ..  ......+.+. -...+.+|+||+++...                .+..++..+..+  ..+..||.||......  
T Consensus       199 ~~--~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~  276 (364)
T TIGR01242       199 EG--ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDP  276 (364)
T ss_pred             HH--HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCCh
Confidence            00  0011112222 23456899999986431                123333222211  2456788888754322  


Q ss_pred             ---HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH
Q 037205          236 ---RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL  288 (439)
Q Consensus       236 ---~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL  288 (439)
                         ........+.++.++.++..++|..++.+......   -....+++.+.|..-
T Consensus       277 al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~sg  329 (364)
T TIGR01242       277 ALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGASG  329 (364)
T ss_pred             hhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCCH
Confidence               21234567899999999999999988754432221   114567777777643

Many proteins may score above the trusted cutoff because an internal

>PRK04195 replication factor C large subunit; Provisional

Probab=98.67  E-value=4.2e-07  Score=94.00  Aligned_cols=168  Identities=17%  Similarity=0.200  Sum_probs=103.1

Q ss_pred             CCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH-------HHHHHHHHHhcCCCCCC
Q 037205          113 KSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL-------LATKLISNLLKDENAIP  182 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~-------~~~~ll~~l~~~~~~~~  182 (439)
                      ..+++|.+..++.+.+++..  .....+.+.|+|++|+||||+|+.+++.+.. ++       .....+..+......  
T Consensus        13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~--   90 (482)
T PRK04195         13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAAT--   90 (482)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhc--
Confidence            36799999999999999864  2222678999999999999999999887642 10       000011111100000  


Q ss_pred             cHHHHHHHhc-cCCceEEecCCCCHH------HHHHHhcCCCCCCCCcEEEEEeCchHH-HH-h-cCCCeEEEcCCCCHH
Q 037205          183 GIDLNFRRLS-RMKVLIFFYDVTCFS------QLESLMGSLDWLTPVSRIILTTRNKQV-LR-N-WGVSKIYEMEALEYH  252 (439)
Q Consensus       183 ~~~~l~~~l~-~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~-~-~~~~~~~~l~~L~~~  252 (439)
                           ...+. .++-+||+|+++...      .+..+...+.  ..+..||+|+.+..- .. . -.....+++++++.+
T Consensus        91 -----~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~  163 (482)
T PRK04195         91 -----SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTR  163 (482)
T ss_pred             -----cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHH
Confidence                 00111 367799999997542      2444443333  234456666643321 11 1 123467899999999


Q ss_pred             HHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205          253 HALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK  291 (439)
Q Consensus       253 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~  291 (439)
                      +....+...+.......  ..+....|++.++|..-.+.
T Consensus       164 ~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ai  200 (482)
T PRK04195        164 SIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAI  200 (482)
T ss_pred             HHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence            99988887774433222  25678889999988766544

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.65  E-value=1.7e-07  Score=89.48  Aligned_cols=130  Identities=19%  Similarity=0.357  Sum_probs=83.2

Q ss_pred             CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HH----------HHHHHHHHHhcC
Q 037205          112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----YL----------LATKLISNLLKD  177 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~----------~~~~ll~~l~~~  177 (439)
                      ...++||-+.-+..+.+     .+..+.+.+||++|+||||||+.+....+.    |+          -.+.++.+    
T Consensus       142 GQ~hlv~q~gllrs~ie-----q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~----  212 (554)
T KOG2028|consen  142 GQSHLVGQDGLLRSLIE-----QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQ----  212 (554)
T ss_pred             chhhhcCcchHHHHHHH-----cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHH----
Confidence            33455555444433332     467888999999999999999999877654    32          01111111    


Q ss_pred             CCCCCcHHHHHHHhccCCceEEecCCC--CHHHHHHHhcCCCCCCCCcEEEE--EeCchHHH---HhcCCCeEEEcCCCC
Q 037205          178 ENAIPGIDLNFRRLSRMKVLIFFYDVT--CFSQLESLMGSLDWLTPVSRIIL--TTRNKQVL---RNWGVSKIYEMEALE  250 (439)
Q Consensus       178 ~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~---~~~~~~~~~~l~~L~  250 (439)
                             ..-...+..++.+|.+|.|.  +..|-+.+++..   -+|+-++|  ||.|+..-   .......++.+++|+
T Consensus       213 -------aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~  282 (554)
T KOG2028|consen  213 -------AQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLP  282 (554)
T ss_pred             -------HHHHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCC
Confidence                   11122355788999999995  344555555554   36766664  88877541   222345788999999


Q ss_pred             HHHHHHHHHH
Q 037205          251 YHHALELFSR  260 (439)
Q Consensus       251 ~~ea~~Lf~~  260 (439)
                      .++...++.+
T Consensus       283 ~n~v~~iL~r  292 (554)
T KOG2028|consen  283 VNAVVTILMR  292 (554)
T ss_pred             HHHHHHHHHH
Confidence            9999998877

>PF13173 AAA_14: AAA domain

Probab=98.64  E-value=6.2e-08  Score=81.65  Aligned_cols=113  Identities=19%  Similarity=0.195  Sum_probs=73.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh--H---HHHHHH-HHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCHHHHHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS--R---YLLATK-LISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLES  211 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~--~---f~~~~~-ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~  211 (439)
                      +++.|.|+.|+|||||+++++++..  .   |+.... -......    .+..+.+.+....++.+++||++.....|..
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~   78 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD----PDLLEYFLELIKPGKKYIFIDEIQYLPDWED   78 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh----hhhHHHHHHhhccCCcEEEEehhhhhccHHH
Confidence            5789999999999999999998765  2   220000 0000000    0022333444444788999999988777766


Q ss_pred             HhcCCCCCCCCcEEEEEeCchHHHHhc------CCCeEEEcCCCCHHHH
Q 037205          212 LMGSLDWLTPVSRIILTTRNKQVLRNW------GVSKIYEMEALEYHHA  254 (439)
Q Consensus       212 l~~~~~~~~~gs~IiiTTR~~~v~~~~------~~~~~~~l~~L~~~ea  254 (439)
                      ....+....+..+|++|+.+......-      |....+++.||+..|-
T Consensus        79 ~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~  127 (128)
T PF13173_consen   79 ALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF  127 (128)
T ss_pred             HHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence            665554445678999999987766331      2335688999998773

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.64  E-value=7.4e-07  Score=94.50  Aligned_cols=225  Identities=14%  Similarity=0.095  Sum_probs=124.0

Q ss_pred             CCCCCCCcccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhH---------H----H-------
Q 037205          109 PRDNKSQLVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISR---------Y----L-------  165 (439)
Q Consensus       109 p~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f----~-------  165 (439)
                      |...+..+.||+.++++|...|..   ++....++.|+|++|.|||++++.|.+.+..         |    +       
T Consensus       750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst  829 (1164)
T PTZ00112        750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH  829 (1164)
T ss_pred             cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence            336678999999999999998864   2333456789999999999999999887643         1    1       


Q ss_pred             ---HHHHHHHHHhcCCC--CCC---cHHHHHHHhc---cCCceEEecCCCCHH-----HHHHHhcCCCCCCCCcEEEE--
Q 037205          166 ---LATKLISNLLKDEN--AIP---GIDLNFRRLS---RMKVLIFFYDVTCFS-----QLESLMGSLDWLTPVSRIIL--  227 (439)
Q Consensus       166 ---~~~~ll~~l~~~~~--~~~---~~~~l~~~l~---~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~Iii--  227 (439)
                         +...+..++.+..+  ...   ....+...+.   ....+||||+++...     .+-.|.....  ..+++|++  
T Consensus       830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIG  907 (1164)
T PTZ00112        830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIA  907 (1164)
T ss_pred             HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEE
Confidence               44455555544333  222   2233333331   123589999997432     1222222111  23555543  


Q ss_pred             EeCc--------hHHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCC--CCCcchHHHHHHHHHHhCCCcHHHHHHHHhh
Q 037205          228 TTRN--------KQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRN--HPDVGYEKLSSNVMKYVQGVPLALKVLGCFL  297 (439)
Q Consensus       228 TTR~--------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L  297 (439)
                      +|.+        +.+...++ ...+..++.+.++-.+++..++-...  ..+...+-+++.++...|-.-.||.++-.+.
T Consensus       908 ISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg  986 (1164)
T PTZ00112        908 ISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF  986 (1164)
T ss_pred             ecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence            3322        12222222 22466799999999999998874321  1122223333444444455666776665554


Q ss_pred             cC-----CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccc
Q 037205          298 YK-----REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVA  343 (439)
Q Consensus       298 ~~-----~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la  343 (439)
                      ..     -..+.-..+...+...       .+.-....||.+.|.+++.+.
T Consensus       987 EikegskVT~eHVrkAleeiE~s-------rI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112        987 ENKRGQKIVPRDITEATNQLFDS-------PLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred             hhcCCCccCHHHHHHHHHHHHhh-------hHHHHHHcCCHHHHHHHHHHH
Confidence            32     1233333333333211       122334567777776555443

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.62  E-value=1.2e-06  Score=87.14  Aligned_cols=175  Identities=15%  Similarity=0.165  Sum_probs=107.9

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH--------HHHHHHHHHhcC----
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YL--------LATKLISNLLKD----  177 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~--------~~~~ll~~l~~~----  177 (439)
                      ..+++|.+..++.+.+.+..+ .-...+.++|++|+||||+|+.+++.+..   +.        ...++.......    
T Consensus        15 ~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~   93 (363)
T PRK14961         15 FRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI   93 (363)
T ss_pred             hhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence            367999999999999888633 22456789999999999999998877531   00        011111110000    


Q ss_pred             CC-CCCcHHHHHH---Hhc-----cCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEE
Q 037205          178 EN-AIPGIDLNFR---RLS-----RMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIY  244 (439)
Q Consensus       178 ~~-~~~~~~~l~~---~l~-----~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~  244 (439)
                      .. .....+.+++   .+.     +++-++|+|+++...  .++.|+..+.......++|++|.+. .+.... +....+
T Consensus        94 ~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~  173 (363)
T PRK14961         94 DAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQF  173 (363)
T ss_pred             cccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEE
Confidence            00 0012222322   222     345689999997654  3566666655445566777766544 333222 234688


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      ++.+++.++..+.+...+...+...  ..+.+..+++.++|.|-.+
T Consensus       174 ~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~a  217 (363)
T PRK14961        174 KLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRDA  217 (363)
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence            9999999999988887664433211  2456788999999988643

>PLN03025 replication factor C subunit; Provisional

Probab=98.62  E-value=2.6e-07  Score=90.47  Aligned_cols=167  Identities=16%  Similarity=0.208  Sum_probs=101.5

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhc-CCCCCCcHHHHHHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLK-DENAIPGIDLNFRR  190 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~-~~~~~~~~~~l~~~  190 (439)
                      .+++|.+..++.|..++..  +..+.+.++|++|+||||+|..+++.+..  |-      ..... ...+....+.++..
T Consensus        13 ~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~------~~~~eln~sd~~~~~~vr~~   84 (319)
T PLN03025         13 DDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYK------EAVLELNASDDRGIDVVRNK   84 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCc------cceeeecccccccHHHHHHH
Confidence            6789999888888887763  33455779999999999999998877521  10      00000 00011122222222


Q ss_pred             h-----------ccCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCCCCHHHHH
Q 037205          191 L-----------SRMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYHHAL  255 (439)
Q Consensus       191 l-----------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~  255 (439)
                      +           .++.-+++||+++...  ....|...+....+.+++|+++... .+.... .....+++++++.++..
T Consensus        85 i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~  164 (319)
T PLN03025         85 IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL  164 (319)
T ss_pred             HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHH
Confidence            1           1345689999997542  3344444443345567777776543 222211 12357899999999999


Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          256 ELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       256 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      ..+...+-..+..-+  .+....+++.++|-.-.+
T Consensus       165 ~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR~a  197 (319)
T PLN03025        165 GRLMKVVEAEKVPYV--PEGLEAIIFTADGDMRQA  197 (319)
T ss_pred             HHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence            988887744332221  456788899998876443

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.61  E-value=2.2e-06  Score=89.36  Aligned_cols=175  Identities=15%  Similarity=0.092  Sum_probs=109.6

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----HHHHHHHHHhcC-CCCC---
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----LATKLISNLLKD-ENAI---  181 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----~~~~ll~~l~~~-~~~~---  181 (439)
                      ..++||.+...+.|.+++..+. -...+.++|++|+||||+|+.+++.+..  +.     -.......+... ..++   
T Consensus        14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI   92 (702)
T PRK14960         14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI   92 (702)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence            3679999999999999887332 2467789999999999999998876531  00     000000111100 0010   


Q ss_pred             -----CcHHHHHHHh--------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchHHH-Hh-cCCCeEE
Q 037205          182 -----PGIDLNFRRL--------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQVL-RN-WGVSKIY  244 (439)
Q Consensus       182 -----~~~~~l~~~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-~~~~~~~  244 (439)
                           ..++.+++.+        .++.-++|+|+++..  .....|+..+.....+.++|++|.+..-. .. ......+
T Consensus        93 DAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~f  172 (702)
T PRK14960         93 DAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQF  172 (702)
T ss_pred             cccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhhee
Confidence                 1333333332        245668999999754  34566665555444567788777654322 11 2344788


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      ++.+++.++..+.+.+.+-......  ..+....|++.++|.+-.+
T Consensus       173 eFkpLs~eEI~k~L~~Il~kEgI~i--d~eAL~~IA~~S~GdLRdA  216 (702)
T PRK14960        173 TLRPLAVDEITKHLGAILEKEQIAA--DQDAIWQIAESAQGSLRDA  216 (702)
T ss_pred             eccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence            9999999999998887764433222  2566788999999977543

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.59  E-value=1.5e-06  Score=89.70  Aligned_cols=174  Identities=14%  Similarity=0.075  Sum_probs=107.8

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH--HHHHHHHHHhc------C
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL--LATKLISNLLK------D  177 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~--~~~~ll~~l~~------~  177 (439)
                      .+++|-+..++.|...+..+. -...+.++|++|+||||+|+.+++.+..        +.  ....+......      .
T Consensus        14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~   92 (504)
T PRK14963         14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA   92 (504)
T ss_pred             HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc
Confidence            578999998888988887432 2346689999999999999998877631        00  00000000000      0


Q ss_pred             CC--CCCcHHHHHHHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEc
Q 037205          178 EN--AIPGIDLNFRRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEM  246 (439)
Q Consensus       178 ~~--~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l  246 (439)
                      ..  .++.+..+...+     .+++-++|+|+++..  ..++.|+..+....+.+.+|++|... .+.... .....+++
T Consensus        93 ~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f  172 (504)
T PRK14963         93 ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRF  172 (504)
T ss_pred             cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEe
Confidence            00  011222233322     245668999999754  44667766665444555666555433 332222 23468999


Q ss_pred             CCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          247 EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       247 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      .+++.++..+.+.+.+-..+...  ..+.+..|++.++|.+--+
T Consensus       173 ~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a  214 (504)
T PRK14963        173 RRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA  214 (504)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence            99999999999988775443222  2567888999999988644

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.59  E-value=9.6e-07  Score=87.00  Aligned_cols=174  Identities=16%  Similarity=0.125  Sum_probs=104.0

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HHHHHHHH----HHHhcCCC--
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YLLATKLI----SNLLKDEN--  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~~~~~ll----~~l~~~~~--  179 (439)
                      .+++|++..++.+.+++..  +..+.+.++|++|+||||+|+.+++.+..        ++....+.    ..+.....  
T Consensus        15 ~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   92 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFA   92 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchh
Confidence            6789999999999998863  34456889999999999999998877531        11111111    11100000  


Q ss_pred             ---------CCCcHHHHHHHh---------ccCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc
Q 037205          180 ---------AIPGIDLNFRRL---------SRMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW  238 (439)
Q Consensus       180 ---------~~~~~~~l~~~l---------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~  238 (439)
                               .......+++.+         ...+-+||+||++...  ....|...+......+++|+||.+.. +....
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L  172 (337)
T PRK12402         93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI  172 (337)
T ss_pred             hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence                     001122222211         1334589999996442  23334433333345677887775432 22222


Q ss_pred             -CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205          239 -GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK  291 (439)
Q Consensus       239 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~  291 (439)
                       .....+++.+++.++....+...+......  -..+.+..+++.++|.+-.+.
T Consensus       173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~  224 (337)
T PRK12402        173 RSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI  224 (337)
T ss_pred             cCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence             233578899999999999888876433322  225678888899988766544

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.58  E-value=2.6e-06  Score=83.19  Aligned_cols=170  Identities=16%  Similarity=0.142  Sum_probs=102.0

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhcCCC-CCC-cHHHHHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLKDEN-AIP-GIDLNFR  189 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~~~~-~~~-~~~~l~~  189 (439)
                      .+++|++..++.+..++..  ...+.+.++|.+|+||||+|+.+++....  |-.   ..-.+..... ... ..+.+..
T Consensus        17 ~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~---~~i~~~~~~~~~~~~~~~~i~~   91 (319)
T PRK00440         17 DEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRE---NFLELNASDERGIDVIRNKIKE   91 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc---ceEEeccccccchHHHHHHHHH
Confidence            5689999999999998863  33445799999999999999999887532  100   0000000000 000 0112222


Q ss_pred             Hhc------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcCCCCHHHHHHHHH
Q 037205          190 RLS------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFS  259 (439)
Q Consensus       190 ~l~------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~  259 (439)
                      ...      ..+-++++|+++..  +....|...+....+.+++|+++.... +.... .....+++++++.++....+.
T Consensus        92 ~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~  171 (319)
T PRK00440         92 FARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLR  171 (319)
T ss_pred             HHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHH
Confidence            211      23558889998643  233445444444445677777764321 11111 123468899999999988888


Q ss_pred             HhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          260 RHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       260 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      ..+-.....-  ..+.+..+++.++|.+.-+
T Consensus       172 ~~~~~~~~~i--~~~al~~l~~~~~gd~r~~  200 (319)
T PRK00440        172 YIAENEGIEI--TDDALEAIYYVSEGDMRKA  200 (319)
T ss_pred             HHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence            8774433221  2567888899999987663

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.56  E-value=7.9e-07  Score=82.64  Aligned_cols=166  Identities=16%  Similarity=0.184  Sum_probs=93.7

Q ss_pred             CCcc-cccchH-HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHH
Q 037205          114 SQLV-GVESRV-EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGID  185 (439)
Q Consensus       114 ~~~v-Gr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~  185 (439)
                      ++|+ |..... ..+.++.. .....+.+.|+|.+|+|||+||+.+++....      |+....+.             .
T Consensus        18 d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~-------------~   83 (227)
T PRK08903         18 DNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL-------------L   83 (227)
T ss_pred             cccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH-------------H
Confidence            4455 554433 34444333 2234567889999999999999999887532      11111110             0


Q ss_pred             HHHHHhccCCceEEecCCCCH--HHHHHHhcCCCCC-CCCc-EEEEEeCchHHHH--------hcCCCeEEEcCCCCHHH
Q 037205          186 LNFRRLSRMKVLIFFYDVTCF--SQLESLMGSLDWL-TPVS-RIILTTRNKQVLR--------NWGVSKIYEMEALEYHH  253 (439)
Q Consensus       186 ~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-~IiiTTR~~~v~~--------~~~~~~~~~l~~L~~~e  253 (439)
                      .+ . .....-+||+||++..  ...+.|...+... ..+. .+|+|++......        .+.....+++++|+.++
T Consensus        84 ~~-~-~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~  161 (227)
T PRK08903         84 AF-D-FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDAD  161 (227)
T ss_pred             HH-h-hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHH
Confidence            00 1 1223457889999643  2222332222111 1333 4666766432211        22224688999999988


Q ss_pred             HHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhh
Q 037205          254 ALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL  297 (439)
Q Consensus       254 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L  297 (439)
                      -..++.+.+-.....  -.++....+++.+.|++..+..+-..+
T Consensus       162 ~~~~l~~~~~~~~v~--l~~~al~~L~~~~~gn~~~l~~~l~~l  203 (227)
T PRK08903        162 KIAALKAAAAERGLQ--LADEVPDYLLTHFRRDMPSLMALLDAL  203 (227)
T ss_pred             HHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            777776654222221  225678888888999999887766654

>PRK09087 hypothetical protein; Validated

Probab=98.54  E-value=1.7e-06  Score=80.20  Aligned_cols=138  Identities=12%  Similarity=0.077  Sum_probs=85.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH----HHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF----SQLES  211 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~  211 (439)
                      .+.+.|||.+|+|||+|++.+++.... |+....+..             .....+.+  -+|++||+...    +.+-.
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~--~~l~iDDi~~~~~~~~~lf~  108 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS-------------DAANAAAE--GPVLIEDIDAGGFDETGLFH  108 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch-------------HHHHhhhc--CeEEEECCCCCCCCHHHHHH
Confidence            466899999999999999988766432 221111100             01111111  37888999532    22322


Q ss_pred             HhcCCCCCCCCcEEEEEeCc---------hHHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHH
Q 037205          212 LMGSLDWLTPVSRIILTTRN---------KQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKY  282 (439)
Q Consensus       212 l~~~~~~~~~gs~IiiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~  282 (439)
                      +.....  ..|..||+|++.         +.+...+.....+++++++.++-.+++.+.+-.....  -.++...-|++.
T Consensus       109 l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~--l~~ev~~~La~~  184 (226)
T PRK09087        109 LINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLY--VDPHVVYYLVSR  184 (226)
T ss_pred             HHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Confidence            222221  346778998873         2333444556789999999999999999887443221  226778888888


Q ss_pred             hCCCcHHHHHH
Q 037205          283 VQGVPLALKVL  293 (439)
Q Consensus       283 ~~GlPLal~~~  293 (439)
                      +.|..-++..+
T Consensus       185 ~~r~~~~l~~~  195 (226)
T PRK09087        185 MERSLFAAQTI  195 (226)
T ss_pred             hhhhHHHHHHH
Confidence            88877776643

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.53  E-value=1.5e-06  Score=91.20  Aligned_cols=176  Identities=16%  Similarity=0.109  Sum_probs=106.7

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----HHHHHHHHHhcCC-------
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----LATKLISNLLKDE-------  178 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----~~~~ll~~l~~~~-------  178 (439)
                      ..++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.+.-  ..     -.......+....       
T Consensus        15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi   93 (709)
T PRK08691         15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI   93 (709)
T ss_pred             HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence            3679999999999999987422 2457889999999999999998776421  00     0000011111100       


Q ss_pred             --CCCCcHHHHHHHhc--------cCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCchH-HHHh-cCCCeEE
Q 037205          179 --NAIPGIDLNFRRLS--------RMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIY  244 (439)
Q Consensus       179 --~~~~~~~~l~~~l~--------~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~  244 (439)
                        .....++.+++.+.        +++-++|+|+++...  ....|+..+......+++|++|.+.. +... .+....+
T Consensus        94 daAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f  173 (709)
T PRK08691         94 DAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQF  173 (709)
T ss_pred             eccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhh
Confidence              00113333433332        456689999997543  34455555443335567776665442 2212 1223567


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK  291 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~  291 (439)
                      .+.+++.++....+.+.+-......  ..+.+..|++.++|.+.-+.
T Consensus       174 ~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdAl  218 (709)
T PRK08691        174 VLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDAL  218 (709)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHHH
Confidence            8889999999998887764433222  25668899999998885443

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.52  E-value=5.7e-07  Score=96.29  Aligned_cols=166  Identities=16%  Similarity=0.252  Sum_probs=96.9

Q ss_pred             CCcccccchHH---HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCC-cHHHHH
Q 037205          114 SQLVGVESRVE---EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIP-GIDLNF  188 (439)
Q Consensus       114 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~-~~~~l~  188 (439)
                      .+|+|.+..+.   .+.+.+.  .+....+.++|++|+||||||+.+++.... |+........+    .++. ......
T Consensus        28 dd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i----~dir~~i~~a~  101 (725)
T PRK13341         28 EEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGV----KDLRAEVDRAK  101 (725)
T ss_pred             HHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhh----HHHHHHHHHHH
Confidence            56899888774   4555554  345567889999999999999999987654 33111111000    0000 111121


Q ss_pred             HHh--ccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEE--EeCchHH--HHh-cCCCeEEEcCCCCHHHHHHHHH
Q 037205          189 RRL--SRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIIL--TTRNKQV--LRN-WGVSKIYEMEALEYHHALELFS  259 (439)
Q Consensus       189 ~~l--~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v--~~~-~~~~~~~~l~~L~~~ea~~Lf~  259 (439)
                      ..+  .+++.+|+|||++.  ..+.+.|.....   .|+.+++  ||.++..  ... ......+.+++|+.++...++.
T Consensus       102 ~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~  178 (725)
T PRK13341        102 ERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLK  178 (725)
T ss_pred             HHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHH
Confidence            222  24567999999964  445666665443   3555555  3444321  111 1124578999999999999988


Q ss_pred             Hhhhc-----CCCCCcchHHHHHHHHHHhCCCcH
Q 037205          260 RHAFK-----RNHPDVGYEKLSSNVMKYVQGVPL  288 (439)
Q Consensus       260 ~~a~~-----~~~~~~~~~~~~~~i~~~~~GlPL  288 (439)
                      +.+-.     ......-..+....+++.+.|..-
T Consensus       179 ~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R  212 (725)
T PRK13341        179 RALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR  212 (725)
T ss_pred             HHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence            76531     011111235667788888887644

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.51  E-value=2.7e-06  Score=87.06  Aligned_cols=179  Identities=18%  Similarity=0.128  Sum_probs=105.1

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--H--H----HHHHHHHHHhc-CCC---C-
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--Y--L----LATKLISNLLK-DEN---A-  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f--~----~~~~ll~~l~~-~~~---~-  180 (439)
                      .++||.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+..  +  .    ... ....+.. ...   . 
T Consensus        14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~-~c~~i~~g~~~dv~el   91 (472)
T PRK14962         14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR-ACRSIDEGTFMDVIEL   91 (472)
T ss_pred             HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH-HHHHHhcCCCCccEEE
Confidence            679999988888888776321 2356789999999999999998876531  0  0    000 0000000 000   0 


Q ss_pred             ----CCcHHHHH---HHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHhc-CCCeEE
Q 037205          181 ----IPGIDLNF---RRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIY  244 (439)
Q Consensus       181 ----~~~~~~l~---~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~  244 (439)
                          ..+.+.++   +..     .+++-++|+|+++..  ...+.|+..+........+|++|.+ ..+.... .....+
T Consensus        92 ~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv  171 (472)
T PRK14962         92 DAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVI  171 (472)
T ss_pred             eCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEE
Confidence                01223222   222     235569999999754  3456666655443344454544444 3332222 234688


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhC-CCcHHHHHHHHh
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQ-GVPLALKVLGCF  296 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~-GlPLal~~~g~~  296 (439)
                      ++.+++.++....+.+.+......-  ..+....|++.++ +++.|+..+-..
T Consensus       172 ~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~GdlR~aln~Le~l  222 (472)
T PRK14962        172 EFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGGLRDALTMLEQV  222 (472)
T ss_pred             EECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999999999888887764333221  2556778888775 456777766553

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.51  E-value=6e-07  Score=90.13  Aligned_cols=172  Identities=17%  Similarity=0.284  Sum_probs=100.1

Q ss_pred             CCCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhc
Q 037205          111 DNKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLK  176 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~  176 (439)
                      ....++.|++..++++.+.+..           +-...+-|.++|++|+|||++|+.+++.... |+  ....+.....+
T Consensus       128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g  207 (389)
T PRK03992        128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIG  207 (389)
T ss_pred             CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhcc
Confidence            3345688999999999986632           1134567899999999999999999987654 32  22222221111


Q ss_pred             CCCCCCcHHHHHHH-hccCCceEEecCCCCH-------------HH---HHHHhcCCCCC--CCCcEEEEEeCchHHHHh
Q 037205          177 DENAIPGIDLNFRR-LSRMKVLIFFYDVTCF-------------SQ---LESLMGSLDWL--TPVSRIILTTRNKQVLRN  237 (439)
Q Consensus       177 ~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~-------------~~---~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~  237 (439)
                      ..  ......+... -...+.+|+||+++..             +.   +..++.....+  ..+..||.||........
T Consensus       208 ~~--~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~  285 (389)
T PRK03992        208 EG--ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDP  285 (389)
T ss_pred             ch--HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCH
Confidence            10  0011112222 2346789999999653             11   22333222221  234567777765433222


Q ss_pred             -----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          238 -----WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       238 -----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                           ...+..+.++.++.++-.++|..+..+..... .  .....++..+.|.-
T Consensus       286 allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~--~~~~~la~~t~g~s  337 (389)
T PRK03992        286 AILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-D--VDLEELAELTEGAS  337 (389)
T ss_pred             HHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-c--CCHHHHHHHcCCCC
Confidence                 12456789999999999999988774332221 1  11455666776654

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.46  E-value=2.4e-06  Score=86.47  Aligned_cols=174  Identities=14%  Similarity=0.089  Sum_probs=106.7

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--H---H------HHHHHHHHHhcCCCCC
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--Y---L------LATKLISNLLKDENAI  181 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f---~------~~~~ll~~l~~~~~~~  181 (439)
                      ..++||-+..+..|..++..+. -...+.++|++|+||||+|+.+++.+..  .   .      ....+..........+
T Consensus        17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEI   95 (484)
T PRK14956         17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEI   95 (484)
T ss_pred             HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceee
Confidence            3679999999999998887332 1346789999999999999999876531  0   0      1111111111000011


Q ss_pred             C-----cHHHHH---HHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHhc-CCCeEE
Q 037205          182 P-----GIDLNF---RRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRNW-GVSKIY  244 (439)
Q Consensus       182 ~-----~~~~l~---~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~  244 (439)
                      +     +++.++   +.+     .++.-++|+|+++..  +.+++|+..+........+|++| ....+.... .....|
T Consensus        96 daas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~  175 (484)
T PRK14956         96 DAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDF  175 (484)
T ss_pred             chhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhhee
Confidence            1     222222   222     345668999999744  45777776665433455555444 434443332 234679


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      .+.+++.++..+.+.+.+-..+..  -..+....|++.++|.+.-
T Consensus       176 ~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~Rd  218 (484)
T PRK14956        176 IFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVRD  218 (484)
T ss_pred             eecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHHH
Confidence            999999999988888776433322  2256788899999998854

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.46  E-value=7.3e-06  Score=81.43  Aligned_cols=179  Identities=15%  Similarity=0.115  Sum_probs=108.4

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH------HHHHHHHHHhcC----
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL------LATKLISNLLKD----  177 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------~~~~ll~~l~~~----  177 (439)
                      -..++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.+...+..     +.      ....+.......    
T Consensus        13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~   91 (355)
T TIGR02397        13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI   91 (355)
T ss_pred             HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence            3678999999999999886322 2457789999999999999988776521     00      000110000000    


Q ss_pred             -CCCCCc---HHHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEE
Q 037205          178 -ENAIPG---IDLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIY  244 (439)
Q Consensus       178 -~~~~~~---~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~  244 (439)
                       ......   ...+.+.+.     +++-++|+|+++..  .....+...+....+.+.+|++|.+.. +.... .....+
T Consensus        92 ~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~  171 (355)
T TIGR02397        92 DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRF  171 (355)
T ss_pred             eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEE
Confidence             000011   222333222     34558889998654  445566655544445667677765544 22222 234578


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLG  294 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g  294 (439)
                      ++.+++.++..+.+...+-......  ..+.+..+++.++|.|..+....
T Consensus       172 ~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~l  219 (355)
T TIGR02397       172 DFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSLL  219 (355)
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHHH
Confidence            8999999999988887764333222  24678889999999987654443

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.44  E-value=2.4e-06  Score=78.84  Aligned_cols=150  Identities=17%  Similarity=0.222  Sum_probs=86.8

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----HHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCC
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR--------YL----LATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDV  203 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv  203 (439)
                      ....+.|||..|+|||.|.+++++....        |+    ....+...+..     .....++..++ .-=+|++||+
T Consensus        33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~-----~~~~~~~~~~~-~~DlL~iDDi  106 (219)
T PF00308_consen   33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD-----GEIEEFKDRLR-SADLLIIDDI  106 (219)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT-----TSHHHHHHHHC-TSSEEEEETG
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc-----ccchhhhhhhh-cCCEEEEecc
Confidence            3556889999999999999999988654        22    22233333322     23445556666 3456778999


Q ss_pred             CCH---HHH-HHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 037205          204 TCF---SQL-ESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPD  269 (439)
Q Consensus       204 ~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~  269 (439)
                      +..   ..+ +.+...+.. ...|.+||+|++..         .+...+...-.+++.+++.++-.+++.+.+-.....-
T Consensus       107 ~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l  186 (219)
T PF00308_consen  107 QFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIEL  186 (219)
T ss_dssp             GGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S
T ss_pred             hhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCC
Confidence            542   212 122211111 13467899999633         2233334557899999999999999998885443322


Q ss_pred             cchHHHHHHHHHHhCCCcHHHHHH
Q 037205          270 VGYEKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       270 ~~~~~~~~~i~~~~~GlPLal~~~  293 (439)
                        .++.+.-+++.+.+..-.|.-+
T Consensus       187 --~~~v~~~l~~~~~~~~r~L~~~  208 (219)
T PF00308_consen  187 --PEEVIEYLARRFRRDVRELEGA  208 (219)
T ss_dssp             ---HHHHHHHHHHTTSSHHHHHHH
T ss_pred             --cHHHHHHHHHhhcCCHHHHHHH
Confidence              2566677777766655554433

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.42  E-value=2.8e-05  Score=81.82  Aligned_cols=176  Identities=15%  Similarity=0.172  Sum_probs=107.8

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----------HH--HHHHHHHHHhcCC-C
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----------YL--LATKLISNLLKDE-N  179 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------f~--~~~~ll~~l~~~~-~  179 (439)
                      ..++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+--          .-  -.-.....+.... .
T Consensus        15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~   93 (618)
T PRK14951         15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV   93 (618)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence            3679999988889998887432 2456789999999999999998665420          00  0000011111100 0


Q ss_pred             ---CC-----CcHHHHHHHhc--------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHh-cC
Q 037205          180 ---AI-----PGIDLNFRRLS--------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRN-WG  239 (439)
Q Consensus       180 ---~~-----~~~~~l~~~l~--------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~  239 (439)
                         .+     ..++.+++.+.        ++.-++|||+++..  ...+.|+..+.......++|++|.+ ..+... ..
T Consensus        94 D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlS  173 (618)
T PRK14951         94 DYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLS  173 (618)
T ss_pred             ceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHH
Confidence               11     13444444432        34458899999754  4566777666544455666655543 333322 23


Q ss_pred             CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205          240 VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK  291 (439)
Q Consensus       240 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~  291 (439)
                      ....+++.+++.++..+.+.+.+...+...  ..+.+..|++.++|.+--+.
T Consensus       174 Rc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~al  223 (618)
T PRK14951        174 RCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDAL  223 (618)
T ss_pred             hceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence            357899999999999998887764433222  24567888999998775443

>PRK05642 DNA replication initiation factor; Validated

Probab=98.41  E-value=8e-06  Score=76.23  Aligned_cols=146  Identities=16%  Similarity=0.231  Sum_probs=86.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH---H
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF---S  207 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~  207 (439)
                      .+.+.|||.+|+|||.|++.+++....      |+...++...          ...+.+.+.+-. +||+||+...   .
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~----------~~~~~~~~~~~d-~LiiDDi~~~~~~~  113 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR----------GPELLDNLEQYE-LVCLDDLDVIAGKA  113 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh----------hHHHHHhhhhCC-EEEEechhhhcCCh
Confidence            367889999999999999999876542      3322222211          122333343332 6788999522   2


Q ss_pred             HHH-HHhcCCCC-CCCCcEEEEEeCchHH---------HHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHH
Q 037205          208 QLE-SLMGSLDW-LTPVSRIILTTRNKQV---------LRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLS  276 (439)
Q Consensus       208 ~~~-~l~~~~~~-~~~gs~IiiTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~  276 (439)
                      .++ .|...+.. ...|..+|+||+....         ...+.....+++.+++.++-.+++..++.......  .++..
T Consensus       114 ~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l--~~ev~  191 (234)
T PRK05642        114 DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHL--TDEVG  191 (234)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHH
Confidence            222 23322221 1346788888874322         12223346789999999999999986664432211  25677


Q ss_pred             HHHHHHhCCCcHHHHHHHH
Q 037205          277 SNVMKYVQGVPLALKVLGC  295 (439)
Q Consensus       277 ~~i~~~~~GlPLal~~~g~  295 (439)
                      .-+++.+.|-.-.+..+-.
T Consensus       192 ~~L~~~~~~d~r~l~~~l~  210 (234)
T PRK05642        192 HFILTRGTRSMSALFDLLE  210 (234)
T ss_pred             HHHHHhcCCCHHHHHHHHH
Confidence            7788877777665544433

>PRK08727 hypothetical protein; Validated

Probab=98.41  E-value=7.8e-06  Score=76.26  Aligned_cols=163  Identities=13%  Similarity=0.099  Sum_probs=93.3

Q ss_pred             CCCcccccc-hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHH
Q 037205          113 KSQLVGVES-RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGID  185 (439)
Q Consensus       113 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~  185 (439)
                      .++|++... .+..+..+..  ......+.|+|.+|+|||+|+..+++....      |+...+...          ...
T Consensus        18 f~~f~~~~~n~~~~~~~~~~--~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~----------~~~   85 (233)
T PRK08727         18 FDSYIAAPDGLLAQLQALAA--GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG----------RLR   85 (233)
T ss_pred             hhhccCCcHHHHHHHHHHHh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh----------hHH
Confidence            355665543 3333333332  122345999999999999999999887543      211111110          011


Q ss_pred             HHHHHhccCCceEEecCCCCHH---HH-HHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCCeEEEcCCCCH
Q 037205          186 LNFRRLSRMKVLIFFYDVTCFS---QL-ESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYEMEALEY  251 (439)
Q Consensus       186 ~l~~~l~~~~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~  251 (439)
                      ...+.+ ...-+||+||+....   .+ ..+...+.. ...|..||+||+..         .+...+.....+++++++.
T Consensus        86 ~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~  164 (233)
T PRK08727         86 DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDD  164 (233)
T ss_pred             HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCH
Confidence            111222 234589999996321   11 223222211 12466799999843         2223333456889999999


Q ss_pred             HHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          252 HHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       252 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      ++-.+++.+.+......  -..+...-+++.+.|-.-++
T Consensus       165 e~~~~iL~~~a~~~~l~--l~~e~~~~La~~~~rd~r~~  201 (233)
T PRK08727        165 VARAAVLRERAQRRGLA--LDEAAIDWLLTHGERELAGL  201 (233)
T ss_pred             HHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence            99999999877543322  22566778888887665554

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.40  E-value=4e-06  Score=87.24  Aligned_cols=175  Identities=14%  Similarity=0.133  Sum_probs=108.6

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-------HH-----HHHHHHHHHhcCC--
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-------YL-----LATKLISNLLKDE--  178 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~-----~~~~ll~~l~~~~--  178 (439)
                      ..++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+.-       -+     -.-.....+....  
T Consensus        15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp   93 (700)
T PRK12323         15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV   93 (700)
T ss_pred             HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence            3679999999999999887332 2456789999999999999998776521       00     0000011111000  


Q ss_pred             C--CC-----CcHHHHHHHh--------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeC-chHHHHhc-C
Q 037205          179 N--AI-----PGIDLNFRRL--------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTR-NKQVLRNW-G  239 (439)
Q Consensus       179 ~--~~-----~~~~~l~~~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR-~~~v~~~~-~  239 (439)
                      +  .+     ..++.+++.+        .++.-++|+|+++..  ...+.|+..+..-..+.++|++|. ...+.... .
T Consensus        94 DviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrS  173 (700)
T PRK12323         94 DYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS  173 (700)
T ss_pred             cceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHH
Confidence            0  11     1233333332        245568999999754  457777777665455666665554 44443332 2


Q ss_pred             CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          240 VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       240 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      ....+.+..++.++..+.+.+.+.......  ..+..+.|++.++|.|.-.
T Consensus       174 RCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdA  222 (700)
T PRK12323        174 RCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDA  222 (700)
T ss_pred             HHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence            346789999999999998887764332221  2455688899999998643

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.39  E-value=4e-06  Score=90.01  Aligned_cols=177  Identities=15%  Similarity=0.143  Sum_probs=109.5

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH---------HHHHHHHHHh-----cC
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL---------LATKLISNLL-----KD  177 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~---------~~~~ll~~l~-----~~  177 (439)
                      .++||-+..++.|.+.+..+. -...+.++|++|+||||+|+.+++.+..  ..         ....+.....     -.
T Consensus        16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid   94 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD   94 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence            679999999999998886321 2345689999999999999999877631  00         0001100000     00


Q ss_pred             CCCCCcHHHHH---HHh-----ccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHh-cCCCeEEE
Q 037205          178 ENAIPGIDLNF---RRL-----SRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRN-KQVLRN-WGVSKIYE  245 (439)
Q Consensus       178 ~~~~~~~~~l~---~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~~  245 (439)
                      ......++.++   ..+     .++.-++|||+++.  ....+.|+..+.......++|++|.+ ..+... ......|+
T Consensus        95 Aas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~  174 (944)
T PRK14949         95 AASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFN  174 (944)
T ss_pred             cccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEe
Confidence            00001222222   222     34667999999964  44567777666554556677665554 444333 22347899


Q ss_pred             cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHH
Q 037205          246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVL  293 (439)
Q Consensus       246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~  293 (439)
                      +.+|+.++....+.+.+-.....  -..+.+..|++.++|.|- |+.++
T Consensus       175 fkpLs~eEI~~~L~~il~~EgI~--~edeAL~lIA~~S~Gd~R~ALnLL  221 (944)
T PRK14949        175 LKSLTQDEIGTQLNHILTQEQLP--FEAEALTLLAKAANGSMRDALSLT  221 (944)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            99999999999888766332221  225678889999999885 44443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.39  E-value=8.4e-07  Score=75.39  Aligned_cols=115  Identities=26%  Similarity=0.291  Sum_probs=65.0

Q ss_pred             ccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCC-CC-CcHHHHH
Q 037205          117 VGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDEN-AI-PGIDLNF  188 (439)
Q Consensus       117 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~-~~-~~~~~l~  188 (439)
                      +|++..+..+...+..  +..+.+.|+|.+|+||||||+.+++....      ++.............. .. .......
T Consensus         1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (151)
T cd00009           1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE   78 (151)
T ss_pred             CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence            4788888899888763  24567889999999999999999988632      1100000000000000 00 0001112


Q ss_pred             HHhccCCceEEecCCCCH-----HHHHHHhcCCCCC---CCCcEEEEEeCchH
Q 037205          189 RRLSRMKVLIFFYDVTCF-----SQLESLMGSLDWL---TPVSRIILTTRNKQ  233 (439)
Q Consensus       189 ~~l~~~~~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~IiiTTR~~~  233 (439)
                      .....++.+|++||++..     ..+..+.......   ..+..||+||....
T Consensus        79 ~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            223456789999999853     2233333333221   35778888888543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.37  E-value=7e-06  Score=84.54  Aligned_cols=175  Identities=17%  Similarity=0.161  Sum_probs=108.3

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---------HH------HHHHHHHHHhcC
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---------YL------LATKLISNLLKD  177 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~------~~~~ll~~l~~~  177 (439)
                      ..+++|-+..++.|...+..+ .-...+.++|++|+||||+|+.+++.+-.         +.      ....+.......
T Consensus        20 f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D   98 (507)
T PRK06645         20 FAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD   98 (507)
T ss_pred             HHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence            367899999999988877632 22457889999999999999999877521         00      001110000000


Q ss_pred             CCCC-----CcHHHHHHHh--------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEE-EeCchHHHHhc-CC
Q 037205          178 ENAI-----PGIDLNFRRL--------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIIL-TTRNKQVLRNW-GV  240 (439)
Q Consensus       178 ~~~~-----~~~~~l~~~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~~-~~  240 (439)
                      ...+     ..++.++..+        .+++-++|+|+++..  ..++.|+..+....+.+.+|+ ||+...+.... ..
T Consensus        99 v~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SR  178 (507)
T PRK06645         99 IIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISR  178 (507)
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhc
Confidence            0000     1233333322        245678999999764  446777766654445666654 55554554433 23


Q ss_pred             CeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          241 SKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       241 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      ...+++.+++.++....+.+.+-......  ..+....|++.++|.+--+
T Consensus       179 c~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR~a  226 (507)
T PRK06645        179 CQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSARDA  226 (507)
T ss_pred             ceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence            46789999999999999988875433222  2456778899998876443

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.36  E-value=4.9e-06  Score=84.97  Aligned_cols=179  Identities=14%  Similarity=0.201  Sum_probs=103.6

Q ss_pred             CCcccccch--HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----HHHHHHHHHhcCCC
Q 037205          114 SQLVGVESR--VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL----LATKLISNLLKDEN  179 (439)
Q Consensus       114 ~~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----~~~~ll~~l~~~~~  179 (439)
                      ..++|....  ......+..........+.|+|..|+|||+|++++++.+..        |+    +...+...+.... 
T Consensus       116 nFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-  194 (450)
T PRK14087        116 NFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-  194 (450)
T ss_pred             cccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-
Confidence            345576443  22333333222223456889999999999999999986542        33    2233333322110 


Q ss_pred             CCCcHHHHHHHhccCCceEEecCCCCH----HHHHHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCCeEEE
Q 037205          180 AIPGIDLNFRRLSRMKVLIFFYDVTCF----SQLESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYE  245 (439)
Q Consensus       180 ~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~  245 (439)
                        ...+.+++.++ ..-+||+||+...    ...+.|...+.. ...|..||+|+...         .+...+...-...
T Consensus       195 --~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~  271 (450)
T PRK14087        195 --KEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIA  271 (450)
T ss_pred             --hHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceec
Confidence              12233444444 3458888999532    112333222211 13455788887632         2222333456788


Q ss_pred             cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHh
Q 037205          246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCF  296 (439)
Q Consensus       246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~  296 (439)
                      +++++.++-.+++.+.+-.......-.++.+.-|++.+.|.|-.+.-+...
T Consensus       272 L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~  322 (450)
T PRK14087        272 IQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR  322 (450)
T ss_pred             cCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence            999999999999998874322111233678899999999999887655543

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.35  E-value=1.3e-05  Score=74.79  Aligned_cols=165  Identities=15%  Similarity=0.217  Sum_probs=92.9

Q ss_pred             Ccccccc-hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHH
Q 037205          115 QLVGVES-RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLN  187 (439)
Q Consensus       115 ~~vGr~~-~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l  187 (439)
                      .++|-.. .+..+.++..  ....+.+.|+|++|+|||+|++.+++....      |+.......          ....+
T Consensus        24 f~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~----------~~~~~   91 (235)
T PRK08084         24 FYPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW----------FVPEV   91 (235)
T ss_pred             cccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh----------hhHHH
Confidence            3346322 3344444433  223467899999999999999998887542      221111000          01112


Q ss_pred             HHHhccCCceEEecCCCCH---HHHH-HHhcCCCC-CCCC-cEEEEEeCch---------HHHHhcCCCeEEEcCCCCHH
Q 037205          188 FRRLSRMKVLIFFYDVTCF---SQLE-SLMGSLDW-LTPV-SRIILTTRNK---------QVLRNWGVSKIYEMEALEYH  252 (439)
Q Consensus       188 ~~~l~~~~~LlVlDdv~~~---~~~~-~l~~~~~~-~~~g-s~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~  252 (439)
                      .+.+.. --+|++||+...   .+|+ .+...+.. ...| .++|+||+.+         .+...+....++++++++.+
T Consensus        92 ~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~  170 (235)
T PRK08084         92 LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDE  170 (235)
T ss_pred             HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHH
Confidence            222222 247889999542   2222 11111111 1123 4789999854         22333445578999999999


Q ss_pred             HHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHH
Q 037205          253 HALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLG  294 (439)
Q Consensus       253 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g  294 (439)
                      +-.+++.+.+......  -.++...-+++.+.|..-++..+-
T Consensus       171 ~~~~~l~~~a~~~~~~--l~~~v~~~L~~~~~~d~r~l~~~l  210 (235)
T PRK08084        171 EKLQALQLRARLRGFE--LPEDVGRFLLKRLDREMRTLFMTL  210 (235)
T ss_pred             HHHHHHHHHHHHcCCC--CCHHHHHHHHHhhcCCHHHHHHHH
Confidence            9999988766433221  226777888888887766554433

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.35  E-value=3.8e-05  Score=76.26  Aligned_cols=175  Identities=13%  Similarity=0.079  Sum_probs=107.2

Q ss_pred             CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------H---------H----HHHH
Q 037205          111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------Y---------L----LATK  169 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f---------~----~~~~  169 (439)
                      ....+++|-+...+.|.+.+..+. -...+.++|+.|+||+|+|..+.+.+--        .         -    ..+.
T Consensus        16 ~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~   94 (365)
T PRK07471         16 RETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR   94 (365)
T ss_pred             CchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence            345679999999999998887432 2446889999999999999987765420        0         0    0000


Q ss_pred             HHHHH-------hc---CC-----CCCCcHHHHHHH---hc-----cCCceEEecCCCC--HHHHHHHhcCCCCCCCCcE
Q 037205          170 LISNL-------LK---DE-----NAIPGIDLNFRR---LS-----RMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSR  224 (439)
Q Consensus       170 ll~~l-------~~---~~-----~~~~~~~~l~~~---l~-----~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~  224 (439)
                      +....       ..   ..     ..+ .++.+++.   +.     +.+.++|+|+++.  ......|+..+.....++.
T Consensus        95 i~~~~HPDl~~i~~~~~~~~~~~~~~I-~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~  173 (365)
T PRK07471         95 IAAGAHGGLLTLERSWNEKGKRLRTVI-TVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL  173 (365)
T ss_pred             HHccCCCCeEEEecccccccccccccc-cHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence            00000       00   00     001 23334332   22     4567889999964  3445566655544445667


Q ss_pred             EEEEeCchH-HHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205          225 IILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       225 IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~  293 (439)
                      +|++|.+.. +.... .....+.+.+++.++..+++.....   ...   ......++..++|.|+....+
T Consensus       174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~~~---~~~~~~l~~~s~Gsp~~Al~l  238 (365)
T PRK07471        174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---DLP---DDPRAALAALAEGSVGRALRL  238 (365)
T ss_pred             EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---cCC---HHHHHHHHHHcCCCHHHHHHH
Confidence            777777653 33222 2356889999999999999987541   111   222367899999999865554

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.34  E-value=6.7e-06  Score=85.49  Aligned_cols=180  Identities=18%  Similarity=0.140  Sum_probs=106.6

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH---------HHHHHHHHHhcC----
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL---------LATKLISNLLKD----  177 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~---------~~~~ll~~l~~~----  177 (439)
                      ..+++|.+..++.+.+.+..+ .-...+.++|++|+||||+|+.+++.+..  |.         ....+.......    
T Consensus        15 F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieI   93 (605)
T PRK05896         15 FKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVEL   93 (605)
T ss_pred             HHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEe
Confidence            367999999999999988632 22467889999999999999998877531  11         111111100000    


Q ss_pred             -CCCCCcHHHHHHH---hc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHh-cCCCeEE
Q 037205          178 -ENAIPGIDLNFRR---LS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRN-WGVSKIY  244 (439)
Q Consensus       178 -~~~~~~~~~l~~~---l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~-~~~~~~~  244 (439)
                       .....+++.++..   +.     +++-++|+|+++..  .....|+..+......+.+|++| ....+... ......+
T Consensus        94 daas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~i  173 (605)
T PRK05896         94 DAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRY  173 (605)
T ss_pred             ccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhc
Confidence             0000122333322   22     23447999999653  44556665544333455565555 43333322 2234678


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLGC  295 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~  295 (439)
                      ++.+++.++....+...+-..+..-  ..+.+..+++.++|.+- |+..+-.
T Consensus       174 eF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~GdlR~AlnlLek  223 (605)
T PRK05896        174 NFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSLRDGLSILDQ  223 (605)
T ss_pred             ccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            9999999999988887664333211  14567889999999654 5544443

>PTZ00202 tuzin; Provisional

Probab=98.33  E-value=2.9e-05  Score=77.06  Aligned_cols=195  Identities=12%  Similarity=0.139  Sum_probs=109.4

Q ss_pred             HHHHHHHHHh-------------ccccccccCCcc--hhhHHHHHHHhhhhcccccc---cCCCCCCCCcccccchHHHH
Q 037205           65 TWRKGLREAV-------------GLSGFHYRSIRP--ESELINEVVNHILKRLLEEV---FRPRDNKSQLVGVESRVEEI  126 (439)
Q Consensus        65 ~W~~aL~~~~-------------~~~g~~~~~~~~--e~~~i~~iv~~i~~~l~~~~---~~p~~~~~~~vGr~~~~~~l  126 (439)
                      .||-+|++-+             ...||.+.+...  .+-...--++...+.+++..   .+-......|+||+.++..|
T Consensus       195 d~RY~l~KYsG~vSa~~a~lgv~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~L  274 (550)
T PTZ00202        195 DFRYVLTKYSGVVSASVALLGVASVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWV  274 (550)
T ss_pred             hhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHH
Confidence            6777776533             334555544332  22234444555555554422   11115678999999999999


Q ss_pred             HhhhccCC-CCeeEEEEecCCCChhHHHHHHHHhHHhH---HH-------HHHHHHHHHhcCCCCC--CcHHHHHHHh--
Q 037205          127 ESLLSVES-KDVYALGIWGIGGIGKTTIARATFDKISR---YL-------LATKLISNLLKDENAI--PGIDLNFRRL--  191 (439)
Q Consensus       127 ~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~-------~~~~ll~~l~~~~~~~--~~~~~l~~~l--  191 (439)
                      ...|...+ ...+++.|.|++|+|||||++.+......   |+       +...++..+.-.....  +....+.+.+  
T Consensus       275 r~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~  354 (550)
T PTZ00202        275 RQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKALGVPNVEACGDLLDFISEACRR  354 (550)
T ss_pred             HHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Confidence            99997433 33569999999999999999998876654   11       5556666665432211  1333333322  


Q ss_pred             ---c-cCCceEEec--CCCCHHH-HHHHhcCCCCCCCCcEEEEEeCchHHHHhc---CCCeEEEcCCCCHHHHHHHHHH
Q 037205          192 ---S-RMKVLIFFY--DVTCFSQ-LESLMGSLDWLTPVSRIILTTRNKQVLRNW---GVSKIYEMEALEYHHALELFSR  260 (439)
Q Consensus       192 ---~-~~~~LlVlD--dv~~~~~-~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~  260 (439)
                         . +++.+||+-  +=.+... ..+.. .+..-..-|.|++----+.+....   ..-.-|-+++++.++|.+.-..
T Consensus       355 ~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h  432 (550)
T PTZ00202        355 AKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH  432 (550)
T ss_pred             HHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence               2 566666653  2222221 11111 111112456777655433332111   1235688999999999876544

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.33  E-value=6.1e-06  Score=78.38  Aligned_cols=145  Identities=14%  Similarity=0.175  Sum_probs=80.2

Q ss_pred             CcccccchHHHHHhhhcc-------------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH--HHHHHH
Q 037205          115 QLVGVESRVEEIESLLSV-------------ESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL--LATKLI  171 (439)
Q Consensus       115 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~--~~~~ll  171 (439)
                      .++|.+...+.|.+....             ..+....+.++|++|+||||+|+.+++.+..        ++  -...+.
T Consensus         7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~   86 (261)
T TIGR02881         7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV   86 (261)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence            467777666655543211             1234567889999999999999999876532        11  001111


Q ss_pred             HHHhcCCCCCCcHHHHHHHhc-cCCceEEecCCCC----------HHHHHHHhcCCCCCCCCcEEEEEeCchHHHH----
Q 037205          172 SNLLKDENAIPGIDLNFRRLS-RMKVLIFFYDVTC----------FSQLESLMGSLDWLTPVSRIILTTRNKQVLR----  236 (439)
Q Consensus       172 ~~l~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~----  236 (439)
                      ....+.     ....+...+. ...-+|++|+++.          .+.++.+............+|+++.....-.    
T Consensus        87 ~~~~g~-----~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~  161 (261)
T TIGR02881        87 GEYIGH-----TAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSL  161 (261)
T ss_pred             hhhccc-----hHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhc
Confidence            111000     1122222222 1245889999964          2345666655543333445555554322100    


Q ss_pred             --hc--CCCeEEEcCCCCHHHHHHHHHHhhhc
Q 037205          237 --NW--GVSKIYEMEALEYHHALELFSRHAFK  264 (439)
Q Consensus       237 --~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~  264 (439)
                        ..  .....+.+++++.++-.+++.+.+..
T Consensus       162 ~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~  193 (261)
T TIGR02881       162 NPGLRSRFPISIDFPDYTVEELMEIAERMVKE  193 (261)
T ss_pred             ChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence              01  12356889999999999999877643

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.33  E-value=2e-05  Score=76.97  Aligned_cols=170  Identities=18%  Similarity=0.209  Sum_probs=105.2

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHH---HHHHHHhc-CCCCCCcHHHHHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLAT---KLISNLLK-DENAIPGIDLNFR  189 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~---~ll~~l~~-~~~~~~~~~~l~~  189 (439)
                      .+++|-+..++.+.+.+..+ .-.....++|+.|+||||+|+.++..+..-....   .+ ..+.. ....+ .++.+++
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~-~~~~~~~~~~i-~v~~ir~   80 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDI-IEFKPINKKSI-GVDDIRN   80 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCe-EEeccccCCCC-CHHHHHH
Confidence            46789888889999888632 2345778999999999999999887641000000   00 00000 00111 2223332


Q ss_pred             Hh--------ccCCceEEecCCC--CHHHHHHHhcCCCCCCCCcEEEEEeCchHHH-Hh-cCCCeEEEcCCCCHHHHHHH
Q 037205          190 RL--------SRMKVLIFFYDVT--CFSQLESLMGSLDWLTPVSRIILTTRNKQVL-RN-WGVSKIYEMEALEYHHALEL  257 (439)
Q Consensus       190 ~l--------~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-~~~~~~~~l~~L~~~ea~~L  257 (439)
                      ..        .+++-++|+|+++  +...++.|+..+....+++.+|++|.+.... .. ......+++.+++.++....
T Consensus        81 ~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~  160 (313)
T PRK05564         81 IIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKF  160 (313)
T ss_pred             HHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence            22        2345567777764  4556778887777666788888888766432 22 12346889999999999887


Q ss_pred             HHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHH
Q 037205          258 FSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKV  292 (439)
Q Consensus       258 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~  292 (439)
                      +.+.. .  ..   ..+.+..++..++|.|.-+..
T Consensus       161 l~~~~-~--~~---~~~~~~~l~~~~~g~~~~a~~  189 (313)
T PRK05564        161 ISYKY-N--DI---KEEEKKSAIAFSDGIPGKVEK  189 (313)
T ss_pred             HHHHh-c--CC---CHHHHHHHHHHcCCCHHHHHH
Confidence            76543 1  11   134477889999998875543

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.33  E-value=8.2e-06  Score=85.97  Aligned_cols=175  Identities=13%  Similarity=0.121  Sum_probs=106.9

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----HHHHHHHHHhcCC-------
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----LATKLISNLLKDE-------  178 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----~~~~ll~~l~~~~-------  178 (439)
                      ..++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+-.  ..     ..-.....+....       
T Consensus        15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~iei   93 (647)
T PRK07994         15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEI   93 (647)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceee
Confidence            3679999999999998887432 2345789999999999999998876532  00     0000111111100       


Q ss_pred             --CCCCcHHHHHH---H-----hccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHh-cCCCeEE
Q 037205          179 --NAIPGIDLNFR---R-----LSRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRN-WGVSKIY  244 (439)
Q Consensus       179 --~~~~~~~~l~~---~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~  244 (439)
                        .....++.+++   .     ..++.-++|+|+++..  ...+.|+..+.......++|++|.+ ..+... ......|
T Consensus        94 daas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~  173 (647)
T PRK07994         94 DAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF  173 (647)
T ss_pred             cccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEe
Confidence              00012223322   2     2345668999999643  4566666655544456666655544 444322 2235789


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      .+.+|+.++..+.+.+.+-......  ..+....|++.++|.+--.
T Consensus       174 ~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~A  217 (647)
T PRK07994        174 HLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDA  217 (647)
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence            9999999999998887663332222  2456778999999977643

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=2.7e-05  Score=77.19  Aligned_cols=181  Identities=17%  Similarity=0.236  Sum_probs=111.4

Q ss_pred             CCCCCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----------HHHH
Q 037205          110 RDNKSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL----------LATK  169 (439)
Q Consensus       110 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----------~~~~  169 (439)
                      ...+..+.+|+.+++++...|..  .++...-+.|+|.+|.|||+.++.+++.+..        ++          +...
T Consensus        13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~   92 (366)
T COG1474          13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSK   92 (366)
T ss_pred             CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence            35566799999999999998864  2223334889999999999999999998876        11          5666


Q ss_pred             HHHHHhcCCC-CCC---cHHHHHHHhc--cCCceEEecCCCCHH-----HHHHHhcCCCCCCCCcEE--EEEeCchHHHH
Q 037205          170 LISNLLKDEN-AIP---GIDLNFRRLS--RMKVLIFFYDVTCFS-----QLESLMGSLDWLTPVSRI--ILTTRNKQVLR  236 (439)
Q Consensus       170 ll~~l~~~~~-~~~---~~~~l~~~l~--~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~I--iiTTR~~~v~~  236 (439)
                      ++..+..... ..+   ..+.+.+.+.  ++.+++|||+++...     .+-.|.......  .++|  |..+-+.....
T Consensus        93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~  170 (366)
T COG1474          93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLD  170 (366)
T ss_pred             HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHH
Confidence            6666652222 222   4455555554  477899999996432     233443333222  3443  33444333322


Q ss_pred             h--------cCCCeEEEcCCCCHHHHHHHHHHhh---hcCCCCCcchHHHHHHHHHHhCC-CcHHHHHH
Q 037205          237 N--------WGVSKIYEMEALEYHHALELFSRHA---FKRNHPDVGYEKLSSNVMKYVQG-VPLALKVL  293 (439)
Q Consensus       237 ~--------~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~  293 (439)
                      .        ++. ..+..++-+.+|-.+.+..++   |......+...+++..++...+| --.|+..+
T Consensus       171 ~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil  238 (366)
T COG1474         171 YLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL  238 (366)
T ss_pred             HhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence            2        222 336788889999999888765   44444454555555555555554 34444444

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.31  E-value=1.3e-05  Score=80.27  Aligned_cols=170  Identities=16%  Similarity=0.153  Sum_probs=103.8

Q ss_pred             CCcccccchHHHHHhhhccCCC--------CeeEEEEecCCCChhHHHHHHHHhHHhH-H---H------HHHHHHHHHh
Q 037205          114 SQLVGVESRVEEIESLLSVESK--------DVYALGIWGIGGIGKTTIARATFDKISR-Y---L------LATKLISNLL  175 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f---~------~~~~ll~~l~  175 (439)
                      .+++|-+..++.|.+.+..+.+        -...+.++|++|+|||++|+.++..+-- -   .      ....+..   
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~---   81 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA---   81 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc---
Confidence            5688999999999998875331        2467889999999999999998765310 0   0      0000000   


Q ss_pred             cCCCCC---------CcHH---HHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHH
Q 037205          176 KDENAI---------PGID---LNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVL  235 (439)
Q Consensus       176 ~~~~~~---------~~~~---~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~  235 (439)
                      +..+++         -.++   .+.+.+.     +++-++++|+++..  .....|+..+....++..+|++|.+. .+.
T Consensus        82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~ll  161 (394)
T PRK07940         82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVL  161 (394)
T ss_pred             CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHCh
Confidence            011110         0222   3333332     34457888999754  33455665555445567677666654 333


Q ss_pred             Hhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205          236 RNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       236 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~  293 (439)
                      ... .....+.+.+++.++..+.+....   . .+   .+.+..++..++|.|.....+
T Consensus       162 pTIrSRc~~i~f~~~~~~~i~~~L~~~~---~-~~---~~~a~~la~~s~G~~~~A~~l  213 (394)
T PRK07940        162 PTIRSRCRHVALRTPSVEAVAEVLVRRD---G-VD---PETARRAARASQGHIGRARRL  213 (394)
T ss_pred             HHHHhhCeEEECCCCCHHHHHHHHHHhc---C-CC---HHHHHHHHHHcCCCHHHHHHH
Confidence            332 234688999999999988886432   1 11   355778899999999754433

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.30  E-value=1.5e-05  Score=81.45  Aligned_cols=174  Identities=18%  Similarity=0.148  Sum_probs=106.5

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH------HHHHHHHHHhcCCCCC
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL------LATKLISNLLKDENAI  181 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------~~~~ll~~l~~~~~~~  181 (439)
                      ..++||-+..++.|.+.+..+. -...+.++|++|+||||+|+.++..+--     .-      ....+..........+
T Consensus        12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei   90 (491)
T PRK14964         12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI   90 (491)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence            3679999999998888876332 2347889999999999999988765310     00      0111111000000011


Q ss_pred             -----CcHHHHHHHhc--------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeC-chHHHHhc-CCCeEE
Q 037205          182 -----PGIDLNFRRLS--------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTR-NKQVLRNW-GVSKIY  244 (439)
Q Consensus       182 -----~~~~~l~~~l~--------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR-~~~v~~~~-~~~~~~  244 (439)
                           ..++.+++.+.        ++.-++|+|+++..  ...+.|+..+....+.+++|++|. ...+.... .....+
T Consensus        91 daas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~  170 (491)
T PRK14964         91 DAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRF  170 (491)
T ss_pred             ecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheee
Confidence                 13334433322        35568999999643  346666666655456677766554 34443332 234678


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      ++.+++.++..+.+.+.+......-  ..+.+..|++.++|.+-.
T Consensus       171 ~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR~  213 (491)
T PRK14964        171 DLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMRN  213 (491)
T ss_pred             ecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence            9999999999998888775443222  255677888899887753

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.30  E-value=1.5e-05  Score=80.30  Aligned_cols=175  Identities=13%  Similarity=0.107  Sum_probs=104.5

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH-----------HHHHHHHH
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL-----------LATKLISN  173 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~-----------~~~~ll~~  173 (439)
                      ..+++|.+..++.|.+.+..+. -...+.++|++|+||||+|+.+++.+.-        |.           ....+...
T Consensus        15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~   93 (397)
T PRK14955         15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG   93 (397)
T ss_pred             HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence            3679999998898888887322 2345889999999999999998776520        00           00000000


Q ss_pred             Hhc-----CCCCCCcHHHH---HHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHh
Q 037205          174 LLK-----DENAIPGIDLN---FRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRN  237 (439)
Q Consensus       174 l~~-----~~~~~~~~~~l---~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~  237 (439)
                      ...     .......++.+   .+.+.     +++-++|+|+++..  ..++.|...+....+.+.+|++| +...+...
T Consensus        94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t  173 (397)
T PRK14955         94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT  173 (397)
T ss_pred             CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence            000     00000123333   33332     34568899999744  35666666665445566666555 43444332


Q ss_pred             c-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          238 W-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       238 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      . .....+++.+++.++..+.+...+-.....  -..+.+..++..++|.+--+
T Consensus       174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~--i~~~al~~l~~~s~g~lr~a  225 (397)
T PRK14955        174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGIS--VDADALQLIGRKAQGSMRDA  225 (397)
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence            2 123568899999999988887765332211  22567889999999977543

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.28  E-value=9.6e-06  Score=84.11  Aligned_cols=178  Identities=15%  Similarity=0.147  Sum_probs=105.8

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----HHHHHHHHHhcCC-CC---C
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----LATKLISNLLKDE-NA---I  181 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----~~~~ll~~l~~~~-~~---~  181 (439)
                      ..++||-+..++.|...+..+ .-...+.++|++|+||||+|+.+++.+..  ..     ..-.....+.... .+   +
T Consensus        15 f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei   93 (546)
T PRK14957         15 FAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI   93 (546)
T ss_pred             HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence            367999999999999888632 22456789999999999999999876531  00     0000000010000 00   0


Q ss_pred             -----CcHH---HHHHHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEE-EeCchHHHHh-cCCCeEE
Q 037205          182 -----PGID---LNFRRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIIL-TTRNKQVLRN-WGVSKIY  244 (439)
Q Consensus       182 -----~~~~---~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~-~~~~~~~  244 (439)
                           .+++   .+...+     .+++-++|+|+++..  ...+.|+..+......+.+|+ ||....+... ......+
T Consensus        94 daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~  173 (546)
T PRK14957         94 DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQL  173 (546)
T ss_pred             ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeE
Confidence                 0222   222222     245669999999743  446667666654445666664 5443334323 2335789


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVL  293 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~  293 (439)
                      ++.+++.++....+.+.+-..+..  -..+....+++.++|-+- |+..+
T Consensus       174 ~f~~Ls~~eI~~~L~~il~~egi~--~e~~Al~~Ia~~s~GdlR~alnlL  221 (546)
T PRK14957        174 HLKHISQADIKDQLKIILAKENIN--SDEQSLEYIAYHAKGSLRDALSLL  221 (546)
T ss_pred             EeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999999888777755332221  225567788888988654 44444

>PRK06620 hypothetical protein; Validated

Probab=98.28  E-value=7.4e-06  Score=75.29  Aligned_cols=132  Identities=12%  Similarity=0.074  Sum_probs=78.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCHHH--HHHHhc
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQ--LESLMG  214 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~  214 (439)
                      +.+.|||++|+|||+|++.+++.... |+.      .          ........ ...-+|++||++..++  +-.+..
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~------~----------~~~~~~~~-~~~d~lliDdi~~~~~~~lf~l~N  107 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK------D----------IFFNEEIL-EKYNAFIIEDIENWQEPALLHIFN  107 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc------h----------hhhchhHH-hcCCEEEEeccccchHHHHHHHHH
Confidence            67899999999999999987766432 110      0          00000111 2335788899975432  222222


Q ss_pred             CCCCCCCCcEEEEEeCchH-------HHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          215 SLDWLTPVSRIILTTRNKQ-------VLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       215 ~~~~~~~gs~IiiTTR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                      ...  ..|..||+|++.+.       +...+....++++++++.++-..++.+.+......  -.++...-+++.+.|--
T Consensus       108 ~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~--l~~ev~~~L~~~~~~d~  183 (214)
T PRK06620        108 IIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVT--ISRQIIDFLLVNLPREY  183 (214)
T ss_pred             HHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCH
Confidence            111  34678999887432       22333445689999999999888887776422211  12566777777776654


Q ss_pred             HHH
Q 037205          288 LAL  290 (439)
Q Consensus       288 Lal  290 (439)
                      -.+
T Consensus       184 r~l  186 (214)
T PRK06620        184 SKI  186 (214)
T ss_pred             HHH
Confidence            443

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=98.28  E-value=2.6e-07  Score=79.25  Aligned_cols=68  Identities=26%  Similarity=0.283  Sum_probs=56.0

Q ss_pred             cccchHHHHHHHHhhhhcCC--CEEEEEeeecCccccc-cccccchhhHHHHHHHhhhc--hHHHHHHHHHHH
Q 037205            4 CSLLIGLKLVLFHLTQKEHA--QIVLPVFYRVDPSYVR-NQTGSFGDSFSKLQERFEQN--LEKLQTWRKGLR   71 (439)
Q Consensus         4 ~~~~~~~el~~i~~~~~~~~--~~vlPiFy~v~ps~vr-~q~~~~~~~~~~~~~~~~~~--~e~v~~W~~aL~   71 (439)
                      .|.||+.||.++++|....+  +.|+|+||+|.|++++ .+.+.|...|..........  .++...|++++.
T Consensus        68 ~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   68 SSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            47899999999999997655  8999999999999999 79999988887766554433  467889998864

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.27  E-value=2.9e-05  Score=80.44  Aligned_cols=175  Identities=13%  Similarity=0.071  Sum_probs=105.2

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH----HHHHHHHHHhcCC-C-----
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YL----LATKLISNLLKDE-N-----  179 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~----~~~~ll~~l~~~~-~-----  179 (439)
                      ..++||-+..++.|.+.+..+. -...+.++|++|+||||+|+.+++.+--   +-    -.-.....+.... .     
T Consensus        15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei   93 (509)
T PRK14958         15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV   93 (509)
T ss_pred             HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence            3679999999999999987332 2446789999999999999998876521   00    0000011111100 0     


Q ss_pred             ---CCCcHHHHHHHhc--------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEE
Q 037205          180 ---AIPGIDLNFRRLS--------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIY  244 (439)
Q Consensus       180 ---~~~~~~~l~~~l~--------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~  244 (439)
                         ....++.+++.+.        ++.-++|+|+++..  ...++|+..+....+.+++|++|.+. .+.... .....+
T Consensus        94 daas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~  173 (509)
T PRK14958         94 DAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQF  173 (509)
T ss_pred             cccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhh
Confidence               0113343443332        35568889999753  44666666555444567777655443 332221 234568


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      ++.+++.++....+.+.+-..+...  ..+....|++.++|.+.-+
T Consensus       174 ~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~a  217 (509)
T PRK14958        174 HLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRDA  217 (509)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence            8999999988877666653333222  2455778899999987544

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.27  E-value=1.7e-05  Score=86.28  Aligned_cols=173  Identities=14%  Similarity=0.103  Sum_probs=105.6

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH------HHHHHHHHHhcCC----
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL------LATKLISNLLKDE----  178 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------~~~~ll~~l~~~~----  178 (439)
                      .++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.+.-     .-      ....+...-....    
T Consensus        15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~e   93 (824)
T PRK07764         15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTE   93 (824)
T ss_pred             HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEE
Confidence            679999999999999887322 2346789999999999999998877631     00      0111110000000    


Q ss_pred             ---CCCCcHHHHHH---H-----hccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeC-chHHHHhc-CCCeE
Q 037205          179 ---NAIPGIDLNFR---R-----LSRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTR-NKQVLRNW-GVSKI  243 (439)
Q Consensus       179 ---~~~~~~~~l~~---~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR-~~~v~~~~-~~~~~  243 (439)
                         .....++.+++   .     ..++.-++|||+++..  ...+.|+..+......+.+|++|. ...+...+ .....
T Consensus        94 idaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~  173 (824)
T PRK07764         94 IDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHH  173 (824)
T ss_pred             ecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeE
Confidence               00012333332   2     2245558889999754  446666666655556666665554 44444432 24578


Q ss_pred             EEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          244 YEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       244 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      |++..++.++..+.+.+.+-......  ..+....|++.++|.+..
T Consensus       174 v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR~  217 (824)
T PRK07764        174 YPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVRD  217 (824)
T ss_pred             EEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence            89999999999888877653332211  245677889999998743

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.24  E-value=7.8e-06  Score=88.77  Aligned_cols=141  Identities=15%  Similarity=0.116  Sum_probs=81.8

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------HH-HHHHHHHHHhcCCCC
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------------YL-LATKLISNLLKDENA  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~-~~~~ll~~l~~~~~~  180 (439)
                      ..++||+.++..+.+.|...  ...-+.++|++|+|||++|+.+++++..            |. ....++..   ....
T Consensus       182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~---~~~~  256 (731)
T TIGR02639       182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAG---TKYR  256 (731)
T ss_pred             CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhh---cccc
Confidence            56999999999999988743  3345679999999999999999988632            00 11111110   0000


Q ss_pred             CCcHHHHHHHh----ccCCceEEecCCCCH-----------HHHHHHhcCCCCCCCC-cEEEEEeCchHHHH-------h
Q 037205          181 IPGIDLNFRRL----SRMKVLIFFYDVTCF-----------SQLESLMGSLDWLTPV-SRIILTTRNKQVLR-------N  237 (439)
Q Consensus       181 ~~~~~~l~~~l----~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g-s~IiiTTR~~~v~~-------~  237 (439)
                      -.....++..+    ...+.+|++|+++..           +.-+.|.+.+.   .| -++|-+|..+..-.       .
T Consensus       257 g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al  333 (731)
T TIGR02639       257 GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRAL  333 (731)
T ss_pred             chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHH
Confidence            00112222222    246789999999632           11223333332   33 24444443221110       0


Q ss_pred             cCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          238 WGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       238 ~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                      ......+++++++.++..+++....
T Consensus       334 ~rRf~~i~v~~p~~~~~~~il~~~~  358 (731)
T TIGR02639       334 SRRFQKIDVGEPSIEETVKILKGLK  358 (731)
T ss_pred             HHhCceEEeCCCCHHHHHHHHHHHH
Confidence            1123578999999999999998644

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.23  E-value=7e-06  Score=82.34  Aligned_cols=175  Identities=16%  Similarity=0.201  Sum_probs=100.1

Q ss_pred             CCCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhc
Q 037205          111 DNKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLK  176 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~  176 (439)
                      ..-.++.|.+..+++|.+.+..           +-...+-+.++|++|+|||+||+.+++.... |+  ....+.....+
T Consensus       142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~g  221 (398)
T PTZ00454        142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLG  221 (398)
T ss_pred             CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcc
Confidence            3446688999999888886531           1134678999999999999999999987654 22  11122221111


Q ss_pred             CCCCCCcHHHHHHHhccCCceEEecCCCCH-------------H---HHHHHhcCCCCC--CCCcEEEEEeCchHHHHh-
Q 037205          177 DENAIPGIDLNFRRLSRMKVLIFFYDVTCF-------------S---QLESLMGSLDWL--TPVSRIILTTRNKQVLRN-  237 (439)
Q Consensus       177 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~-  237 (439)
                      ... ....+.+.......+.+|+||+++..             .   .+..++..+..+  ..+..||.||........ 
T Consensus       222 e~~-~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpA  300 (398)
T PTZ00454        222 EGP-RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA  300 (398)
T ss_pred             hhH-HHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHH
Confidence            100 00112222233457889999998532             0   122333333221  235567888875544322 


Q ss_pred             ----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          238 ----WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       238 ----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                          ...+..++++..+.++-.++|..+..+... .++  -....++..+.|+.-|
T Consensus       301 llR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~d--vd~~~la~~t~g~sga  353 (398)
T PTZ00454        301 LLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEE--VDLEDFVSRPEKISAA  353 (398)
T ss_pred             HcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-Ccc--cCHHHHHHHcCCCCHH
Confidence                134567899999999988888766532221 111  1144566667666443

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.22  E-value=2.4e-05  Score=79.79  Aligned_cols=152  Identities=14%  Similarity=0.190  Sum_probs=89.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH--------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH--
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR--------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF--  206 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--  206 (439)
                      ...+.|||.+|+|||+||+.+++.+..        |+...+++..+...... .....+++......-+|++||+...  
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~-~~~~~f~~~~~~~~dvLlIDDi~~l~~  208 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKE-GKLNEFREKYRKKVDVLLIDDVQFLIG  208 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhc-ccHHHHHHHHHhcCCEEEEechhhhcC
Confidence            456899999999999999999988643        33222222222211100 1233344444445668999999632  


Q ss_pred             -HHH-HHHhcCCCC-CCCCcEEEEEeC-chHHHHh--------cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHH
Q 037205          207 -SQL-ESLMGSLDW-LTPVSRIILTTR-NKQVLRN--------WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEK  274 (439)
Q Consensus       207 -~~~-~~l~~~~~~-~~~gs~IiiTTR-~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~  274 (439)
                       ... +.+...+.. ...|..||+||. .+.-...        +.....+++++++.+.-..++.+.+.......  .++
T Consensus       209 ~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l--~~e  286 (440)
T PRK14088        209 KTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL--PEE  286 (440)
T ss_pred             cHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC--CHH
Confidence             111 122221110 123457888874 4432222        23345788999999999999988874332222  256


Q ss_pred             HHHHHHHHhCCCcHHHH
Q 037205          275 LSSNVMKYVQGVPLALK  291 (439)
Q Consensus       275 ~~~~i~~~~~GlPLal~  291 (439)
                      .+..|++.+.|.--.|.
T Consensus       287 v~~~Ia~~~~~~~R~L~  303 (440)
T PRK14088        287 VLNFVAENVDDNLRRLR  303 (440)
T ss_pred             HHHHHHhccccCHHHHH
Confidence            78888888887655544

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.22  E-value=1.8e-05  Score=83.95  Aligned_cols=47  Identities=26%  Similarity=0.380  Sum_probs=38.5

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+.++|++..++.+.+.+..  .....+.|+|++|+||||||+.+++..
T Consensus       153 ~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~  199 (615)
T TIGR02903       153 FSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA  199 (615)
T ss_pred             HHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            35799999999988877652  335579999999999999999988665

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.22  E-value=2.2e-05  Score=82.17  Aligned_cols=181  Identities=15%  Similarity=0.128  Sum_probs=110.4

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH---------HHHHHHHHHhcCCCCC-
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL---------LATKLISNLLKDENAI-  181 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~---------~~~~ll~~l~~~~~~~-  181 (439)
                      .+++|-+..++.|.+.+..+ .-...+.++|++|+||||+|+.+++.+--  +.         ....+..........+ 
T Consensus        16 ~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId   94 (624)
T PRK14959         16 AEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEID   94 (624)
T ss_pred             HHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEe
Confidence            67899988888888888632 22467889999999999999998876531  00         0111111100000001 


Q ss_pred             ----CcHHH---HHHHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHhc-CCCeEEE
Q 037205          182 ----PGIDL---NFRRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIYE  245 (439)
Q Consensus       182 ----~~~~~---l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~  245 (439)
                          ..++.   +.+.+     .+++-++|+|+++..  .....|+..+........+|++|.+ ..+...+ .....++
T Consensus        95 ~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~  174 (624)
T PRK14959         95 GASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFT  174 (624)
T ss_pred             cccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccc
Confidence                02222   32222     245668999999654  4456666665443345566665554 4443332 2335789


Q ss_pred             cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc-HHHHHHHHhh
Q 037205          246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP-LALKVLGCFL  297 (439)
Q Consensus       246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g~~L  297 (439)
                      +.+++.++....+...+.......  ..+.+..|++.++|.+ .|+..+...+
T Consensus       175 F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~GdlR~Al~lLeqll  225 (624)
T PRK14959        175 FTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSVRDSMSLLGQVL  225 (624)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999988887664433211  2566888999999964 6777776544

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.19  E-value=5.8e-05  Score=79.87  Aligned_cols=176  Identities=14%  Similarity=0.138  Sum_probs=107.2

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HH--HHHHHHHHHhcCCC-C----
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YL--LATKLISNLLKDEN-A----  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~--~~~~ll~~l~~~~~-~----  180 (439)
                      .++||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+..      +-  -.......+..... +    
T Consensus        16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i   94 (585)
T PRK14950         16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEM   94 (585)
T ss_pred             HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEE
Confidence            679999999999988886432 2456789999999999999998876531      00  00011112211110 0    


Q ss_pred             ----CCcHHHH---HHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHhc-CCCeEE
Q 037205          181 ----IPGIDLN---FRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIY  244 (439)
Q Consensus       181 ----~~~~~~l---~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~  244 (439)
                          ....+.+   .+.+.     +++-++|+|+++..  +..+.|+..+......+.+|++|.+ ..+.... .....+
T Consensus        95 ~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i  174 (585)
T PRK14950         95 DAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRF  174 (585)
T ss_pred             eccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhcccee
Confidence                0122222   22222     34568999999643  4466666655544456666665543 3333322 234578


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKV  292 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~  292 (439)
                      ++..++..+....+.+.+...+...  ..+.+..+++.++|.+..+..
T Consensus       175 ~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~  220 (585)
T PRK14950        175 DFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAEN  220 (585)
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence            8999999999888887764433222  246688999999998865443

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=2.5e-05  Score=74.92  Aligned_cols=170  Identities=18%  Similarity=0.330  Sum_probs=104.1

Q ss_pred             CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      ..+=|-+.++++|.+....           +-+..+-|.+||+||.|||-||++|+++... |+  ...++.+...++..
T Consensus       151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa  230 (406)
T COG1222         151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA  230 (406)
T ss_pred             hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence            4456788899999886532           1245678899999999999999999999876 54  44444444443321


Q ss_pred             CCCcHHHHHHHhc-cCCceEEecCCCCH-------------H---HHHHHhcCCCCCCC--CcEEEEEeCchHH-----H
Q 037205          180 AIPGIDLNFRRLS-RMKVLIFFYDVTCF-------------S---QLESLMGSLDWLTP--VSRIILTTRNKQV-----L  235 (439)
Q Consensus       180 ~~~~~~~l~~~l~-~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~~~~--gs~IiiTTR~~~v-----~  235 (439)
                      .  .+..+.+..+ +.+..|.+|.++..             +   .+-+|+..+..|.+  +-|||..|.-..+     +
T Consensus       231 R--lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALL  308 (406)
T COG1222         231 R--LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALL  308 (406)
T ss_pred             H--HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhc
Confidence            0  1222222222 46788999998521             1   13344555554433  4588876654433     3


Q ss_pred             HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCCcchHHHHHHHHHHhCCCcHH
Q 037205          236 RNWGVSKIYEMEALEYHHALELFSRHAFKRN-HPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       236 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      ..-..+..++++..+.+.=.++|.-|+-+-. ...-+    .+.+++.|.|.-=|
T Consensus       309 RPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGA  359 (406)
T COG1222         309 RPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGA  359 (406)
T ss_pred             CCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchH
Confidence            3334667899997777777788877763322 22223    44566777776543

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.19  E-value=3.9e-05  Score=75.72  Aligned_cols=179  Identities=15%  Similarity=0.114  Sum_probs=108.1

Q ss_pred             CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH------------HHHHHHHH
Q 037205          111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL------------LATKLISN  173 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------------~~~~ll~~  173 (439)
                      .....++|-+...+.+...+..+. -...+.|+|+.|+||||+|..+...+-.     +.            ....+...
T Consensus        20 ~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~   98 (351)
T PRK09112         20 SENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQG   98 (351)
T ss_pred             CchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcC
Confidence            455779999999999999887432 3456889999999999999988776521     00            11111111


Q ss_pred             -------HhcC---C-----CCCC--cHHHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe
Q 037205          174 -------LLKD---E-----NAIP--GIDLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT  229 (439)
Q Consensus       174 -------l~~~---~-----~~~~--~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT  229 (439)
                             +...   .     ..+.  .+..+.+.+.     ++.-++|+|+++..  ...+.|+..+........+|++|
T Consensus        99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit  178 (351)
T PRK09112         99 AHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS  178 (351)
T ss_pred             CCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence                   0000   0     0111  2222333332     45678999999754  34555555554433455555444


Q ss_pred             -CchHHHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHH
Q 037205          230 -RNKQVLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLG  294 (439)
Q Consensus       230 -R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g  294 (439)
                       +...+.... .....+.+.+++.++..+++....... .   -..+.+..+++.++|.|.....+.
T Consensus       179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-~---~~~~~~~~i~~~s~G~pr~Al~ll  241 (351)
T PRK09112        179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-G---SDGEITEALLQRSKGSVRKALLLL  241 (351)
T ss_pred             CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence             433333222 233689999999999999998743211 1   124557789999999998655443

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.17  E-value=4.1e-05  Score=80.74  Aligned_cols=177  Identities=13%  Similarity=0.113  Sum_probs=104.7

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH-------HHHHHHHHHhc-
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL-------LATKLISNLLK-  176 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~-------~~~~ll~~l~~-  176 (439)
                      ..++||-+..++.|.+.+..+ .-...+.++|++|+||||+|+.+++.+--        |.       -.-.....+.. 
T Consensus        15 f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g   93 (620)
T PRK14954         15 FADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG   93 (620)
T ss_pred             HHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence            367999999999999888632 12345889999999999999988766520        00       00000000000 


Q ss_pred             CCCC--------CCcHHHHHH---Hh-----ccCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEe-CchHHHHh
Q 037205          177 DENA--------IPGIDLNFR---RL-----SRMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTT-RNKQVLRN  237 (439)
Q Consensus       177 ~~~~--------~~~~~~l~~---~l-----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~  237 (439)
                      ...+        ...++.+++   .+     .+++-++|+|+++...  ..+.|+..+......+.+|++| +...+...
T Consensus        94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T  173 (620)
T PRK14954         94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT  173 (620)
T ss_pred             CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence            0000        012333332   23     2345688999996543  4566666655444455555444 44444433


Q ss_pred             -cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHH
Q 037205          238 -WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKV  292 (439)
Q Consensus       238 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~  292 (439)
                       ......+++.+++.++....+.+.+-......  ..+.+..+++.++|..- |+..
T Consensus       174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I--~~eal~~La~~s~Gdlr~al~e  228 (620)
T PRK14954        174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI--DADALQLIARKAQGSMRDAQSI  228 (620)
T ss_pred             HHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHH
Confidence             23457899999999998887777653322111  25668889999999554 4443

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.17  E-value=0.00013  Score=76.59  Aligned_cols=180  Identities=19%  Similarity=0.143  Sum_probs=108.9

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--HHHHHHHHHhcC---C-C--
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL--LATKLISNLLKD---E-N--  179 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--~~~~ll~~l~~~---~-~--  179 (439)
                      ..++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.++..+.-     .-  ..-.....+...   . +  
T Consensus        12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi   90 (584)
T PRK14952         12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV   90 (584)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence            3679999999999999887322 2345789999999999999998876531     00  000001111110   0 0  


Q ss_pred             -----CCCcHHHHH---HHh-----ccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEE-EeCchHHHHhc-CCCe
Q 037205          180 -----AIPGIDLNF---RRL-----SRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIIL-TTRNKQVLRNW-GVSK  242 (439)
Q Consensus       180 -----~~~~~~~l~---~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~~-~~~~  242 (439)
                           ...+++.++   +.+     .+++-++|+|+++.  ....+.|+..+........+|+ ||....+.... ....
T Consensus        91 eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~  170 (584)
T PRK14952         91 ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTH  170 (584)
T ss_pred             EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhce
Confidence                 011333333   222     24556889999964  3456666666655445666665 44444444332 3357


Q ss_pred             EEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHHH
Q 037205          243 IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLGC  295 (439)
Q Consensus       243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~  295 (439)
                      .+++..++.++..+.+.+.+-......  ..+....|++.++|.+- |+..+-.
T Consensus       171 ~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~Ldq  222 (584)
T PRK14952        171 HYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVLDQ  222 (584)
T ss_pred             EEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            899999999999888877664433222  24566778888998764 4444433

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.16  E-value=0.00013  Score=76.84  Aligned_cols=176  Identities=16%  Similarity=0.154  Sum_probs=108.2

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-H---------H--HHHHHHHHHhcCC-C
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-Y---------L--LATKLISNLLKDE-N  179 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f---------~--~~~~ll~~l~~~~-~  179 (439)
                      ..+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+.- .         .  -...-...+.... .
T Consensus        23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~  101 (598)
T PRK09111         23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV  101 (598)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence            3679999999999999887332 2446889999999999999998876531 0         0  0000001111100 0


Q ss_pred             C--------CCcHHHHHHH---hc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHhc-C
Q 037205          180 A--------IPGIDLNFRR---LS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRNW-G  239 (439)
Q Consensus       180 ~--------~~~~~~l~~~---l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~  239 (439)
                      +        ...++.+++.   +.     +++-++|+|+++..  ...+.|+..+....+.+.+|++| ....+.... .
T Consensus       102 Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~S  181 (598)
T PRK09111        102 DVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLS  181 (598)
T ss_pred             ceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHh
Confidence            0        0123333333   22     34567899999644  34566666555444566666554 434443332 2


Q ss_pred             CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205          240 VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK  291 (439)
Q Consensus       240 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~  291 (439)
                      ....+++..++.++....+.+.+-......  ..+.+..|++.++|.+.-+.
T Consensus       182 Rcq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~al  231 (598)
T PRK09111        182 RCQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDGL  231 (598)
T ss_pred             heeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence            346889999999999998888764333222  24667888999999886554

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.15  E-value=2e-05  Score=77.05  Aligned_cols=141  Identities=15%  Similarity=0.141  Sum_probs=82.5

Q ss_pred             CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcH-HHHHH
Q 037205          112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGI-DLNFR  189 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~-~~l~~  189 (439)
                      ...+++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++.... +.       .+.......... ..+..
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~-------~i~~~~~~~~~i~~~l~~   90 (316)
T PHA02544         19 TIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL-------FVNGSDCRIDFVRNRLTR   90 (316)
T ss_pred             cHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccce-------EeccCcccHHHHHHHHHH
Confidence            3467899999999999988732 23467777999999999999999876532 11       000000000000 11111


Q ss_pred             H-----hccCCceEEecCCCCH---HHHHHHhcCCCCCCCCcEEEEEeCchHHH-Hhc-CCCeEEEcCCCCHHHHHHHHH
Q 037205          190 R-----LSRMKVLIFFYDVTCF---SQLESLMGSLDWLTPVSRIILTTRNKQVL-RNW-GVSKIYEMEALEYHHALELFS  259 (439)
Q Consensus       190 ~-----l~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~  259 (439)
                      .     +.+.+-++|+|+++..   +....|...+.....++++|+||...... ... .....+.++..+.++..+++.
T Consensus        91 ~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~  170 (316)
T PHA02544         91 FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMK  170 (316)
T ss_pred             HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHH
Confidence            1     1234568889999754   22233333233334677889888754321 111 223467787888888776654


Q ss_pred             H
Q 037205          260 R  260 (439)
Q Consensus       260 ~  260 (439)
                      .
T Consensus       171 ~  171 (316)
T PHA02544        171 Q  171 (316)
T ss_pred             H
Confidence            3

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.14  E-value=2e-05  Score=81.92  Aligned_cols=178  Identities=16%  Similarity=0.193  Sum_probs=98.4

Q ss_pred             CCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205          112 NKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE  178 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~  178 (439)
                      .-.+++|.+...+++.+++..          +....+-+.++|++|+|||+||+.+++.... |+  ....+.....+..
T Consensus        53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~  132 (495)
T TIGR01241        53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVG  132 (495)
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhccc
Confidence            346688888777666654431          1223456889999999999999999887654 22  1112221111110


Q ss_pred             CCCCcHHHHHHHhccCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHHHH----
Q 037205          179 NAIPGIDLNFRRLSRMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQVLR----  236 (439)
Q Consensus       179 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~----  236 (439)
                      . ......+.......+.+|+||+++...                .+..++..+..+  ..+-.||.||..+....    
T Consensus       133 ~-~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~  211 (495)
T TIGR01241       133 A-SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALL  211 (495)
T ss_pred             H-HHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHh
Confidence            0 001222233334567899999995421                122333333222  22345566666543222    


Q ss_pred             -hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc-HHHHHH
Q 037205          237 -NWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP-LALKVL  293 (439)
Q Consensus       237 -~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~  293 (439)
                       ....+..+.++..+.++-.++|..+.-......   ......+++.+.|.- --|..+
T Consensus       212 r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l  267 (495)
T TIGR01241       212 RPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANL  267 (495)
T ss_pred             cCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHH
Confidence             123456789999999888898887763322211   222457788887754 334433

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.13  E-value=6.6e-05  Score=77.10  Aligned_cols=169  Identities=14%  Similarity=0.167  Sum_probs=98.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----HHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCC
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR--------YL----LATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDV  203 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv  203 (439)
                      ....+.|+|.+|+|||+|++.+++....        |+    +...+...+...     ....+.+.++ +.-+|+|||+
T Consensus       147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~dlLiiDDi  220 (450)
T PRK00149        147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNN-----TMEEFKEKYR-SVDVLLIDDI  220 (450)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcC-----cHHHHHHHHh-cCCEEEEehh
Confidence            3466899999999999999999988753        22    222233333211     2234444444 3458889999


Q ss_pred             CCHH----HHHHHhcCCCC-CCCCcEEEEEeCchH---------HHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 037205          204 TCFS----QLESLMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPD  269 (439)
Q Consensus       204 ~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~  269 (439)
                      +...    ..+.+...+.. ...|..||+||....         +...+.....+++++++.++-..++.+.+-..... 
T Consensus       221 ~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~-  299 (450)
T PRK00149        221 QFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGID-  299 (450)
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence            5321    11222221111 123456788776431         12233344678999999999999999887443221 


Q ss_pred             cchHHHHHHHHHHhCCCcHHHHHHHHhh------cC--CCHHHHHHHHHHH
Q 037205          270 VGYEKLSSNVMKYVQGVPLALKVLGCFL------YK--REKEVWESAINKL  312 (439)
Q Consensus       270 ~~~~~~~~~i~~~~~GlPLal~~~g~~L------~~--~~~~~w~~~l~~l  312 (439)
                       -.++.+.-|++.+.|..-.|.-+-..|      .+  -+....++++..+
T Consensus       300 -l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~  349 (450)
T PRK00149        300 -LPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL  349 (450)
T ss_pred             -CCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence             225778888888888776544332222      11  3455566666654

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.12  E-value=2.7e-06  Score=75.92  Aligned_cols=49  Identities=35%  Similarity=0.535  Sum_probs=34.1

Q ss_pred             CcccccchHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          115 QLVGVESRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       115 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .||||+.+++++...|.. .....+.+.|+|.+|+|||+|.++++..+..
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~   50 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE   50 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            389999999999999942 3445789999999999999999998887654

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.12  E-value=5.5e-05  Score=77.34  Aligned_cols=178  Identities=16%  Similarity=0.170  Sum_probs=105.3

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------HHHHHHHHHHH----hc
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------------YLLATKLISNL----LK  176 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~~~~~ll~~l----~~  176 (439)
                      -.+++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.+++.+..            -.....+-..-    ..
T Consensus        16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~   94 (451)
T PRK06305         16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE   94 (451)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence            3679999999999999886322 2356789999999999999998776521            00000000000    00


Q ss_pred             -CCCCCCcHHHH---HHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHhc-CCCeE
Q 037205          177 -DENAIPGIDLN---FRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKI  243 (439)
Q Consensus       177 -~~~~~~~~~~l---~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~  243 (439)
                       ......+.+.+   .+.+.     +.+-++|+|+++..  ...+.|...+........+|++|.+ ..+.... .....
T Consensus        95 i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~  174 (451)
T PRK06305         95 IDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQK  174 (451)
T ss_pred             eeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceE
Confidence             00000122222   22222     46678899998644  3455555555444456666666543 3333221 23467


Q ss_pred             EEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHH
Q 037205          244 YEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVL  293 (439)
Q Consensus       244 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~  293 (439)
                      +++.+++.++....+.+.+-..+...  ..+.+..+++.++|.+- |+..+
T Consensus       175 v~f~~l~~~el~~~L~~~~~~eg~~i--~~~al~~L~~~s~gdlr~a~~~L  223 (451)
T PRK06305        175 MHLKRIPEETIIDKLALIAKQEGIET--SREALLPIARAAQGSLRDAESLY  223 (451)
T ss_pred             EeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence            89999999999888877663322211  25668889999998664 44443

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.12  E-value=7e-05  Score=75.88  Aligned_cols=147  Identities=16%  Similarity=0.243  Sum_probs=87.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH--------HH----HHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCC
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR--------YL----LATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVT  204 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~  204 (439)
                      ...+.|+|.+|+|||+|++.+++.+..        |+    +...+...+...     ....+.+.+++ .-+|+|||++
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~dlLiiDDi~  209 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNN-----KMEEFKEKYRS-VDLLLIDDIQ  209 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcC-----CHHHHHHHHHh-CCEEEEehhh
Confidence            456889999999999999999988643        22    222233332211     23334444443 3488899996


Q ss_pred             CHH---H-HHHHhcCCCC-CCCCcEEEEEeCc-hHHH--------HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCc
Q 037205          205 CFS---Q-LESLMGSLDW-LTPVSRIILTTRN-KQVL--------RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDV  270 (439)
Q Consensus       205 ~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~-~~v~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~  270 (439)
                      ...   . .+.+...+.. ...+..+|+||.. +...        ..+.....+.+++.+.++-..++.+.+-...... 
T Consensus       210 ~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l-  288 (405)
T TIGR00362       210 FLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL-  288 (405)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC-
Confidence            421   1 1222222111 1235567777763 2222        2222335788999999999999988874433222 


Q ss_pred             chHHHHHHHHHHhCCCcHHHH
Q 037205          271 GYEKLSSNVMKYVQGVPLALK  291 (439)
Q Consensus       271 ~~~~~~~~i~~~~~GlPLal~  291 (439)
                       .++....|++.+.|.+-.|.
T Consensus       289 -~~e~l~~ia~~~~~~~r~l~  308 (405)
T TIGR00362       289 -PDEVLEFIAKNIRSNVRELE  308 (405)
T ss_pred             -CHHHHHHHHHhcCCCHHHHH
Confidence             25777888888888766544

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.12  E-value=2.6e-05  Score=81.24  Aligned_cols=177  Identities=17%  Similarity=0.141  Sum_probs=104.8

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----HHHHHHHHHhcCC--------
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----LATKLISNLLKDE--------  178 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----~~~~ll~~l~~~~--------  178 (439)
                      .++||-+..++.|.+.+..+. -...+.++|++|+||||+|+.+...+.-  ..     -.-.-...+....        
T Consensus        16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~   94 (527)
T PRK14969         16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD   94 (527)
T ss_pred             HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence            679999999999998887322 2346689999999999999998776521  00     0000000010000        


Q ss_pred             -CCCCcHHHHHHHh--------ccCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCch-HHHHh-cCCCeEEE
Q 037205          179 -NAIPGIDLNFRRL--------SRMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRN-WGVSKIYE  245 (439)
Q Consensus       179 -~~~~~~~~l~~~l--------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~  245 (439)
                       .....++.+++.+        .+++-++|+|+++...  ..+.|+..+......+.+|++|.++ .+... ......++
T Consensus        95 ~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~  174 (527)
T PRK14969         95 AASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFN  174 (527)
T ss_pred             ccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHh
Confidence             0011233333322        2455689999997543  3566666655444566666655443 33222 11235788


Q ss_pred             cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHH
Q 037205          246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVL  293 (439)
Q Consensus       246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~  293 (439)
                      +.+++.++..+.+.+.+-..+..  ...+.+..+++.++|.+- |+..+
T Consensus       175 f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~al~ll  221 (527)
T PRK14969        175 LKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDALSLL  221 (527)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            99999999988887766333322  124566888899999775 44443

>CHL00176 ftsH cell division protein; Validated

Probab=98.12  E-value=2.4e-05  Score=82.97  Aligned_cols=170  Identities=16%  Similarity=0.216  Sum_probs=99.0

Q ss_pred             CCCcccccchHHHHHhhhcc---C-------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          113 KSQLVGVESRVEEIESLLSV---E-------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      ..+++|.+...+++.+.+..   .       ....+-|.++|++|+|||+||+.++..... |+  ...++.....+.. 
T Consensus       182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~-  260 (638)
T CHL00176        182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVG-  260 (638)
T ss_pred             HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhh-
Confidence            35688988877777665421   1       112456899999999999999999887654 32  1111111111100 


Q ss_pred             CCCcHHHHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHh----
Q 037205          180 AIPGIDLNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRN----  237 (439)
Q Consensus       180 ~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~----  237 (439)
                      .......+.......+++|+||+++..                ..+..|+..+..+  ..+-.||.||........    
T Consensus       261 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlR  340 (638)
T CHL00176        261 AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLR  340 (638)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhc
Confidence            000122334444567899999999533                1134444333322  234566667765543332    


Q ss_pred             -cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC
Q 037205          238 -WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV  286 (439)
Q Consensus       238 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl  286 (439)
                       ...+..+.++..+.++-.+++..++-....   ........+++.+.|.
T Consensus       341 pGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~  387 (638)
T CHL00176        341 PGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPGF  387 (638)
T ss_pred             cccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCCC
Confidence             124567889999999999999887743221   1133456777777774

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.11  E-value=2.5e-05  Score=85.71  Aligned_cols=160  Identities=13%  Similarity=0.161  Sum_probs=88.8

Q ss_pred             HHHHHHHhhhhcccccccCCCCCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----H
Q 037205           90 LINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----Y  164 (439)
Q Consensus        90 ~i~~iv~~i~~~l~~~~~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f  164 (439)
                      .+++...++.....+..      -..+|||+.++..+...|...  ...-+.++|.+|+||||+|+.+++++..     .
T Consensus       169 ~l~~~~~~L~~~~r~~~------ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~  240 (852)
T TIGR03345       169 ALDQYTTDLTAQAREGK------IDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA  240 (852)
T ss_pred             hHHHHhhhHHHHhcCCC------CCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcc
Confidence            44454444444444433      257999999999999988642  3345669999999999999999988642     0


Q ss_pred             HHHHHH----HHHHhc-CCC--CC-CcHHHHHHHhc--cCCceEEecCCCCHH-------HHH---HHhcCCCCCCCC-c
Q 037205          165 LLATKL----ISNLLK-DEN--AI-PGIDLNFRRLS--RMKVLIFFYDVTCFS-------QLE---SLMGSLDWLTPV-S  223 (439)
Q Consensus       165 ~~~~~l----l~~l~~-~~~--~~-~~~~~l~~~l~--~~~~LlVlDdv~~~~-------~~~---~l~~~~~~~~~g-s  223 (439)
                      +....+    +..+.. ...  +. .....+...+.  +.+++|++|++....       +.+   .|.+.+.   .| -
T Consensus       241 l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~---~G~l  317 (852)
T TIGR03345       241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA---RGEL  317 (852)
T ss_pred             ccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh---CCCe
Confidence            000000    000110 000  00 01111222222  468999999985431       111   2333332   33 4


Q ss_pred             EEEEEeCchHHHHh-------cCCCeEEEcCCCCHHHHHHHHHH
Q 037205          224 RIILTTRNKQVLRN-------WGVSKIYEMEALEYHHALELFSR  260 (439)
Q Consensus       224 ~IiiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~  260 (439)
                      ++|-||.....-..       ......+.+++++.++..+++..
T Consensus       318 ~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~  361 (852)
T TIGR03345       318 RTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRG  361 (852)
T ss_pred             EEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHH
Confidence            55555543222111       12346899999999999999753

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.11  E-value=6.5e-05  Score=75.06  Aligned_cols=173  Identities=16%  Similarity=0.189  Sum_probs=101.0

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHH-HHHHHHHh-cCCCCCCcHHHHHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLA-TKLISNLL-KDENAIPGIDLNFR  189 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~-~~ll~~l~-~~~~~~~~~~~l~~  189 (439)
                      .+++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.+.+.+..  +-.. ...-..+. .........+.+++
T Consensus        17 ~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~   95 (367)
T PRK14970         17 DDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRN   95 (367)
T ss_pred             HhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHH
Confidence            67899999999999988732 23457889999999999999998766421  0000 00000000 00001011222322


Q ss_pred             Hh--------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHh-cCCCeEEEcCCCCHHHHHHH
Q 037205          190 RL--------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRN-WGVSKIYEMEALEYHHALEL  257 (439)
Q Consensus       190 ~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~L  257 (439)
                      ..        .+++-++++|+++..  ..++.+...+......+.+|++| ....+... ......+++.+++.++....
T Consensus        96 l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~  175 (367)
T PRK14970         96 LIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEH  175 (367)
T ss_pred             HHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHH
Confidence            21        234568999998643  33555654443333445555555 33333222 12345789999999999988


Q ss_pred             HHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          258 FSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       258 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      +...+...+..-  ..+.+..++..++|.+-.
T Consensus       176 l~~~~~~~g~~i--~~~al~~l~~~~~gdlr~  205 (367)
T PRK14970        176 LAGIAVKEGIKF--EDDALHIIAQKADGALRD  205 (367)
T ss_pred             HHHHHHHcCCCC--CHHHHHHHHHhCCCCHHH
Confidence            888774433222  256788888899986653

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=98.10  E-value=7.7e-05  Score=69.56  Aligned_cols=246  Identities=18%  Similarity=0.235  Sum_probs=133.2

Q ss_pred             CCCcccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhc-CCCCCC---cHH
Q 037205          113 KSQLVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK-DENAIP---GID  185 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~-~~~~~~---~~~  185 (439)
                      -.+|||.++..+++.-.+..   .....--+.++|+||.||||||.-+++.+..         .+.. +.+.+.   ...
T Consensus        25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv---------n~k~tsGp~leK~gDla   95 (332)
T COG2255          25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV---------NLKITSGPALEKPGDLA   95 (332)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC---------CeEecccccccChhhHH
Confidence            37899999888888776653   2234667899999999999999999888653         0000 011111   122


Q ss_pred             HHHHHhccCCceEEecCCCCHHH-HH-HHhcCCCC--------CCCCcE-----------EEEEeCchHHHHhc--CCCe
Q 037205          186 LNFRRLSRMKVLIFFYDVTCFSQ-LE-SLMGSLDW--------LTPVSR-----------IILTTRNKQVLRNW--GVSK  242 (439)
Q Consensus       186 ~l~~~l~~~~~LlVlDdv~~~~~-~~-~l~~~~~~--------~~~gs~-----------IiiTTR~~~v~~~~--~~~~  242 (439)
                      .+...|+. .=+|.+|.+..... .+ -|.+....        .++++|           |=.|||.-.+...+  ...-
T Consensus        96 aiLt~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi  174 (332)
T COG2255          96 AILTNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGI  174 (332)
T ss_pred             HHHhcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCC
Confidence            22222333 34455688753221 11 12222111        133443           33689955443332  1234


Q ss_pred             EEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHH--HhcCCCccH
Q 037205          243 IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINK--LQRILYPSI  320 (439)
Q Consensus       243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~--l~~~~~~~i  320 (439)
                      +.+++--+.+|-.+...+.+..-...  -.++.+.+|++...|-|--..-+-+..+.     +..+...  +.....+..
T Consensus       175 ~~rlefY~~~eL~~Iv~r~a~~l~i~--i~~~~a~eIA~rSRGTPRIAnRLLrRVRD-----fa~V~~~~~I~~~ia~~a  247 (332)
T COG2255         175 IQRLEFYTVEELEEIVKRSAKILGIE--IDEEAALEIARRSRGTPRIANRLLRRVRD-----FAQVKGDGDIDRDIADKA  247 (332)
T ss_pred             eeeeecCCHHHHHHHHHHHHHHhCCC--CChHHHHHHHHhccCCcHHHHHHHHHHHH-----HHHHhcCCcccHHHHHHH
Confidence            66788888999999888877322211  22567899999999999754443333321     1111000  000000113


Q ss_pred             HHHHHHhhcCCCHHhHHHHhcccccccc-c---------CCCch---hHHH-HHHhhCCceEEccCCeE
Q 037205          321 LEVLKISYDGLDNKEKNIFLGVACFFQV-R---------IGFNL---EIGV-SVLVDKSLIVISNNNKI  375 (439)
Q Consensus       321 ~~~l~~Sy~~L~~~~k~~fl~la~f~~~-~---------~~~~~---~~~l-~~L~~~sLi~~~~~~~~  375 (439)
                      ...|.+-=.+|+...++.+..+.-.+.+ .         -|...   ++.+ --|+..+||+....|++
T Consensus       248 L~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RTpRGR~  316 (332)
T COG2255         248 LKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRTPRGRI  316 (332)
T ss_pred             HHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhhCCCcce
Confidence            3334443446777667776666554433 1         11111   1122 23899999998877764

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.10  E-value=5.5e-06  Score=83.74  Aligned_cols=170  Identities=18%  Similarity=0.248  Sum_probs=97.2

Q ss_pred             CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      .++.|.+..+++|.+.+..           +-...+.+.++|++|+|||+||+.+++.... |+  ....+.....+.. 
T Consensus       183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~-  261 (438)
T PTZ00361        183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDG-  261 (438)
T ss_pred             HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchH-
Confidence            5678999999999887642           1123567889999999999999999987654 32  1111111111100 


Q ss_pred             CCC-cHHHHHHHhccCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHHHHhc--
Q 037205          180 AIP-GIDLNFRRLSRMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQVLRNW--  238 (439)
Q Consensus       180 ~~~-~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~--  238 (439)
                       .. ....+.....+.+.+|+||+++...                .+..++..+..+  ..+..||.||.....+...  
T Consensus       262 -~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLl  340 (438)
T PTZ00361        262 -PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALI  340 (438)
T ss_pred             -HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhc
Confidence             00 1112222234567899999974321                122222222211  2356788888755544332  


Q ss_pred             ---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH
Q 037205          239 ---GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL  288 (439)
Q Consensus       239 ---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL  288 (439)
                         ..+..++++..+.++..++|..+........ +  -....++..+.|+--
T Consensus       341 RpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-d--vdl~~la~~t~g~sg  390 (438)
T PTZ00361        341 RPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-D--VDLEEFIMAKDELSG  390 (438)
T ss_pred             cCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-C--cCHHHHHHhcCCCCH
Confidence               2456789999999999999987763322111 1  113455556655543

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.09  E-value=5.5e-05  Score=72.67  Aligned_cols=119  Identities=15%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH--------HH--HHHHHHHHHhcCCCCCCcHHHHHHHhc-cCCceEEecCCCCH-
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR--------YL--LATKLISNLLKDENAIPGIDLNFRRLS-RMKVLIFFYDVTCF-  206 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~--------f~--~~~~ll~~l~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~-  206 (439)
                      -+.++|++|+||||+|+.++..+..        |+  ....+...+.+..     ...+...+. ...-+|+||++... 
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~-----~~~~~~~~~~a~~gvL~iDEi~~L~  134 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHT-----APKTKEILKRAMGGVLFIDEAYYLY  134 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccc-----hHHHHHHHHHccCcEEEEechhhhc
Confidence            5789999999999999888776543        22  2223333222211     111222222 23468889999632 


Q ss_pred             ----------HHHHHHhcCCCCCCCCcEEEEEeCchHHHHhc--------CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          207 ----------SQLESLMGSLDWLTPVSRIILTTRNKQVLRNW--------GVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       207 ----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                                +..+.|...+.....+.+||+++.....-..+        .....+.+++++.+|-.+++...+
T Consensus       135 ~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l  208 (284)
T TIGR02880       135 RPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML  208 (284)
T ss_pred             cCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence                      22345555444344556777776543221111        124578999999999999988876

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.09  E-value=1.8e-05  Score=87.10  Aligned_cols=142  Identities=15%  Similarity=0.132  Sum_probs=80.3

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH-----HHHHHHHHHh-cCCCCCC
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL-----LATKLISNLL-KDENAIP  182 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~-----~~~~ll~~l~-~~~~~~~  182 (439)
                      ..++||+.+++.+.+.|...  ...-+.++|++|+|||++|..++..+..     ++     +.-.+ ..+. +....-.
T Consensus       179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~-~~l~ag~~~~ge  255 (821)
T CHL00095        179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI-GLLLAGTKYRGE  255 (821)
T ss_pred             CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH-HHHhccCCCccH
Confidence            46899999999999999743  2334579999999999999999888652     11     00000 0111 1111001


Q ss_pred             cHHHHHHH----hccCCceEEecCCCCHH---------HHHHHh-cCCCCCCCCcEEEEEeCchHHHHh-------cCCC
Q 037205          183 GIDLNFRR----LSRMKVLIFFYDVTCFS---------QLESLM-GSLDWLTPVSRIILTTRNKQVLRN-------WGVS  241 (439)
Q Consensus       183 ~~~~l~~~----l~~~~~LlVlDdv~~~~---------~~~~l~-~~~~~~~~gs~IiiTTR~~~v~~~-------~~~~  241 (439)
                      ..+.++..    ...++.+|++|++....         ....++ +.+. .+ .-++|.+|..+.....       ....
T Consensus       256 ~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg-~l~~IgaTt~~ey~~~ie~D~aL~rRf  333 (821)
T CHL00095        256 FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RG-ELQCIGATTLDEYRKHIEKDPALERRF  333 (821)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CC-CcEEEEeCCHHHHHHHHhcCHHHHhcc
Confidence            11222222    23567899999994221         122222 2221 11 2345555544332111       1234


Q ss_pred             eEEEcCCCCHHHHHHHHHH
Q 037205          242 KIYEMEALEYHHALELFSR  260 (439)
Q Consensus       242 ~~~~l~~L~~~ea~~Lf~~  260 (439)
                      .++.++..+.++...++..
T Consensus       334 ~~I~v~ep~~~e~~aILr~  352 (821)
T CHL00095        334 QPVYVGEPSVEETIEILFG  352 (821)
T ss_pred             eEEecCCCCHHHHHHHHHH
Confidence            5788999999998888764

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.08  E-value=9.8e-05  Score=78.54  Aligned_cols=178  Identities=15%  Similarity=0.139  Sum_probs=106.4

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCC-------C
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDEN-------A  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~-------~  180 (439)
                      .+++|.+..++.|...+..+ .-...+.++|++|+||||+|+.++..+-.      +-..............       .
T Consensus        18 ~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaas   96 (725)
T PRK07133         18 DDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAAS   96 (725)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccc
Confidence            67899999999999988732 22456789999999999999998766421      0000000000000000       0


Q ss_pred             -C--CcHHHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEE-EEeCchHHHHh-cCCCeEEEcCC
Q 037205          181 -I--PGIDLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRII-LTTRNKQVLRN-WGVSKIYEMEA  248 (439)
Q Consensus       181 -~--~~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii-iTTR~~~v~~~-~~~~~~~~l~~  248 (439)
                       .  +.++.+.+.+.     +++-++|+|+++..  ..+.+|+..+........+| +||+...+... ......+++.+
T Consensus        97 n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~  176 (725)
T PRK07133         97 NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRR  176 (725)
T ss_pred             cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccC
Confidence             1  11233333333     45568899999643  44666666555434455555 45444444433 23346899999


Q ss_pred             CCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHH
Q 037205          249 LEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLG  294 (439)
Q Consensus       249 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g  294 (439)
                      ++.++....+...+-..+...  ..+.+..+++.++|-+- |+..+-
T Consensus       177 L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR~AlslLe  221 (725)
T PRK07133        177 ISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLRDALSIAE  221 (725)
T ss_pred             CCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence            999999988877653333211  24557789999988654 444443

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.05  E-value=0.00012  Score=65.96  Aligned_cols=144  Identities=17%  Similarity=0.156  Sum_probs=86.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-----------HHHHHHHHHHHh------cCCCCCCcHHHHH---HHh-----
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-----------YLLATKLISNLL------KDENAIPGIDLNF---RRL-----  191 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~~~~~ll~~l~------~~~~~~~~~~~l~---~~l-----  191 (439)
                      ...+.++|+.|+||||+|+.+...+..           ......+...-.      .........+.++   +.+     
T Consensus        14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~   93 (188)
T TIGR00678        14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ   93 (188)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence            367889999999999999998776521           000000000000      0000001223332   222     


Q ss_pred             ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCC
Q 037205          192 SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNH  267 (439)
Q Consensus       192 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~  267 (439)
                      .+.+-++|+||++..  +..+.|+..+....+.+.+|++|++. .+.... .....+++.+++.++..+.+.+.  +   
T Consensus        94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---  168 (188)
T TIGR00678        94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---  168 (188)
T ss_pred             cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---
Confidence            245668899999654  34566666665555667777777654 222221 23468999999999998888776  1   


Q ss_pred             CCcchHHHHHHHHHHhCCCcH
Q 037205          268 PDVGYEKLSSNVMKYVQGVPL  288 (439)
Q Consensus       268 ~~~~~~~~~~~i~~~~~GlPL  288 (439)
                      .+   .+.+..+++.++|.|.
T Consensus       169 i~---~~~~~~i~~~~~g~~r  186 (188)
T TIGR00678       169 IS---EEAAELLLALAGGSPG  186 (188)
T ss_pred             CC---HHHHHHHHHHcCCCcc
Confidence            11   4568899999999885

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.04  E-value=0.0007  Score=71.02  Aligned_cols=175  Identities=14%  Similarity=0.108  Sum_probs=108.2

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--H----H-HHHHHHHHHhcCC-CC---C
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--Y----L-LATKLISNLLKDE-NA---I  181 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f----~-~~~~ll~~l~~~~-~~---~  181 (439)
                      -.+++|-+..++.|...+..+ .-...+.++|++|+||||+|+.+++.+-.  .    - ..-.....+.... .+   +
T Consensus        15 f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~i   93 (563)
T PRK06647         15 FNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEI   93 (563)
T ss_pred             HHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEe
Confidence            367999999999999988742 23456889999999999999998877531  0    0 0000001111110 00   1


Q ss_pred             -----CcHHHHHHHh--------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHhc-CCCeEE
Q 037205          182 -----PGIDLNFRRL--------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIY  244 (439)
Q Consensus       182 -----~~~~~l~~~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~  244 (439)
                           ..++.+++..        .+++-++|+|+++..  ..++.|+..+....+.+.+|++|.+ ..+.... .....+
T Consensus        94 dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~  173 (563)
T PRK06647         94 DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHF  173 (563)
T ss_pred             cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEE
Confidence                 1233333322        245668999999654  3467777666654556666665543 3333322 234578


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      ++.+++.++..+.+.+.+.......  ..+.+..|++.++|.+-.+
T Consensus       174 ~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~a  217 (563)
T PRK06647        174 NFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDA  217 (563)
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence            9999999999888887764433222  2566788999999987543

>PF14516 AAA_35: AAA-like domain

Probab=98.04  E-value=0.001  Score=65.41  Aligned_cols=259  Identities=12%  Similarity=0.169  Sum_probs=138.7

Q ss_pred             CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----------------------HH--
Q 037205          111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----------------------YL--  165 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------------------f~--  165 (439)
                      .+....|.|...-+++.+.+..   .-..+.|.|+-.+|||+|...+.+....                       |.  
T Consensus         8 ~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~   84 (331)
T PF14516_consen    8 LDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRW   84 (331)
T ss_pred             CCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHH
Confidence            4556678898556666665542   2357899999999999999999887764                       11  


Q ss_pred             HHHHHHHHHhcCCC-----------CCCcHHHHHHHh---ccCCceEEecCCCCHHH----HHHHhcCCC-C--------
Q 037205          166 LATKLISNLLKDEN-----------AIPGIDLNFRRL---SRMKVLIFFYDVTCFSQ----LESLMGSLD-W--------  218 (439)
Q Consensus       166 ~~~~ll~~l~~~~~-----------~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~----~~~l~~~~~-~--------  218 (439)
                      +...+..++.-...           .......+.+.+   .+++.+|+||+++..-.    .+.+++.+. |        
T Consensus        85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~  164 (331)
T PF14516_consen   85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP  164 (331)
T ss_pred             HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence            22333333221110           011223333332   25899999999964321    112222111 0        


Q ss_pred             -CCCCcEEEEEeCchHHHH-----hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHH
Q 037205          219 -LTPVSRIILTTRNKQVLR-----NWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKV  292 (439)
Q Consensus       219 -~~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~  292 (439)
                       ...-+-|++.+.......     .++....++|++++.+|...|...+-..   ..   ....+.+...++|+|.-+..
T Consensus       165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~Lv~~  238 (331)
T PF14516_consen  165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYLVQK  238 (331)
T ss_pred             ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHHHHH
Confidence             011112222221111111     1234567899999999999998876422   11   23389999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHhcCCCccHHHHHHHhhcCC--CHHhHHHHhcccccccccCCCchhHHHHHHhhCCceEEc
Q 037205          293 LGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGL--DNKEKNIFLGVACFFQVRIGFNLEIGVSVLVDKSLIVIS  370 (439)
Q Consensus       293 ~g~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L--~~~~k~~fl~la~f~~~~~~~~~~~~l~~L~~~sLi~~~  370 (439)
                      ++..+...... .+..+..-.... .....-|+.-...|  .++.+..+..+-.-.. .... .......|...|||...
T Consensus       239 ~~~~l~~~~~~-~~~l~~~a~~~~-~~~~~hL~~l~~~L~~~~~L~~~~~~il~~~~-~~~~-~~~~~~~L~~~GLV~~~  314 (331)
T PF14516_consen  239 ACYLLVEEQIT-LEQLLEEAITDN-GIYNDHLDRLLDRLQQNPELLEAYQQILFSGE-PVDL-DSDDIYKLESLGLVKRD  314 (331)
T ss_pred             HHHHHHHccCc-HHHHHHHHHHhc-ccHHHHHHHHHHHHccCHHHHHHHHHHHhCCC-Cccc-ChHHHHHHHHCCeEEEe
Confidence            99999653111 112222210000 01111222222333  2344555543332111 1122 23457889999999988


Q ss_pred             cCCeEEec-HHHHH
Q 037205          371 NNNKITMH-DLLQE  383 (439)
Q Consensus       371 ~~~~~~mH-dlv~~  383 (439)
                       +|.+.++ ++-+.
T Consensus       315 -~~~~~~~n~iY~~  327 (331)
T PF14516_consen  315 -GNQLEVRNPIYRQ  327 (331)
T ss_pred             -CCEEEEEcHHHHH
Confidence             6666555 34443

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.02  E-value=4.1e-05  Score=84.47  Aligned_cols=141  Identities=11%  Similarity=0.105  Sum_probs=80.4

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCCC
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDENA  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~~  180 (439)
                      ..++||+.++..+...|...  ....+.++|.+|+|||++|..++.++..     .+        -...++   .+....
T Consensus       173 ~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~---a~~~~~  247 (852)
T TIGR03346       173 DPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI---AGAKYR  247 (852)
T ss_pred             CcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh---hcchhh
Confidence            56999999999999988743  2344568999999999999999887632     00        011111   011100


Q ss_pred             CC---cHHHHHHHh-c-cCCceEEecCCCCHH---------HHHHHhcCCCCCCCC-cEEEEEeCchHHHH-------hc
Q 037205          181 IP---GIDLNFRRL-S-RMKVLIFFYDVTCFS---------QLESLMGSLDWLTPV-SRIILTTRNKQVLR-------NW  238 (439)
Q Consensus       181 ~~---~~~~l~~~l-~-~~~~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~IiiTTR~~~v~~-------~~  238 (439)
                      -.   ....+...+ . +++.+|++|++....         +...++.+..  ..| -++|-+|..+..-.       ..
T Consensus       248 g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~~~~d~al~  325 (852)
T TIGR03346       248 GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKYIEKDAALE  325 (852)
T ss_pred             hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHHhhcCHHHH
Confidence            01   112222222 2 368999999996432         1222222221  223 34444444332211       11


Q ss_pred             CCCeEEEcCCCCHHHHHHHHHHh
Q 037205          239 GVSKIYEMEALEYHHALELFSRH  261 (439)
Q Consensus       239 ~~~~~~~l~~L~~~ea~~Lf~~~  261 (439)
                      ....++.++.++.++...++...
T Consensus       326 rRf~~i~v~~p~~~~~~~iL~~~  348 (852)
T TIGR03346       326 RRFQPVFVDEPTVEDTISILRGL  348 (852)
T ss_pred             hcCCEEEeCCCCHHHHHHHHHHH
Confidence            23356789999999999988654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>CHL00181 cbbX CbbX; Provisional

Probab=98.02  E-value=0.0002  Score=68.88  Aligned_cols=122  Identities=14%  Similarity=0.174  Sum_probs=72.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH--------HH--HHHHHHHHHhcCCCCCCcHHHHHHHhc-cCCceEEecCCCCH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR--------YL--LATKLISNLLKDENAIPGIDLNFRRLS-RMKVLIFFYDVTCF  206 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~--~~~~ll~~l~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~  206 (439)
                      ..+.++|.+|+||||+|+.+++....        |+  ....+.....+...     ......+. ...-+|+||+++..
T Consensus        60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~-----~~~~~~l~~a~ggVLfIDE~~~l  134 (287)
T CHL00181         60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTA-----PKTKEVLKKAMGGVLFIDEAYYL  134 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccch-----HHHHHHHHHccCCEEEEEccchh
Confidence            35789999999999999999876532        21  22233332222111     11122221 23458999999642


Q ss_pred             -----------HHHHHHhcCCCCCCCCcEEEEEeCchHHHHhc--------CCCeEEEcCCCCHHHHHHHHHHhhhc
Q 037205          207 -----------SQLESLMGSLDWLTPVSRIILTTRNKQVLRNW--------GVSKIYEMEALEYHHALELFSRHAFK  264 (439)
Q Consensus       207 -----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a~~  264 (439)
                                 +..+.|...+.....+.+||+++........+        .....+.+++++.+|..+++...+-.
T Consensus       135 ~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~  211 (287)
T CHL00181        135 YKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE  211 (287)
T ss_pred             ccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence                       23455555444444556777777543321111        23567899999999999998887743

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.01  E-value=0.0001  Score=75.22  Aligned_cols=143  Identities=15%  Similarity=0.164  Sum_probs=82.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH------HHH----HHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR------YLL----ATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF  206 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~----~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~  206 (439)
                      ...+.|+|.+|+|||+|++.+++.+..      |+.    ...+...+...     ..+.++..++ ..-+|++||+...
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~-----~~~~f~~~~~-~~dvLiIDDiq~l  214 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSG-----EMQRFRQFYR-NVDALFIEDIEVF  214 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcc-----hHHHHHHHcc-cCCEEEEcchhhh
Confidence            356889999999999999999998753      332    22222222211     1233344333 3458888998532


Q ss_pred             H----HHHHHhcCCCC-CCCCcEEEEEeCc-hHH--------HHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcch
Q 037205          207 S----QLESLMGSLDW-LTPVSRIILTTRN-KQV--------LRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGY  272 (439)
Q Consensus       207 ~----~~~~l~~~~~~-~~~gs~IiiTTR~-~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~  272 (439)
                      .    ..+.+...+.. ...|..||+||.. +..        ...+.....+++.+++.++-..++.+.+-.....-  .
T Consensus       215 ~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l--~  292 (445)
T PRK12422        215 SGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRI--E  292 (445)
T ss_pred             cCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCC--C
Confidence            1    11222221110 1235578888854 222        22233346889999999999999988774432211  2


Q ss_pred             HHHHHHHHHHhCCCc
Q 037205          273 EKLSSNVMKYVQGVP  287 (439)
Q Consensus       273 ~~~~~~i~~~~~GlP  287 (439)
                      .+...-++..+.+.-
T Consensus       293 ~evl~~la~~~~~di  307 (445)
T PRK12422        293 ETALDFLIEALSSNV  307 (445)
T ss_pred             HHHHHHHHHhcCCCH
Confidence            455666666666543

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.00  E-value=9e-05  Score=77.32  Aligned_cols=151  Identities=14%  Similarity=0.206  Sum_probs=88.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH--------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH--
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR--------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF--  206 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--  206 (439)
                      ...+.|||..|+|||.|+..+++....        |+...+++..+...... .....+++.+.+ .=+|||||+...  
T Consensus       314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~-~~~~~f~~~y~~-~DLLlIDDIq~l~g  391 (617)
T PRK14086        314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRD-GKGDSFRRRYRE-MDILLVDDIQFLED  391 (617)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHh-ccHHHHHHHhhc-CCEEEEehhccccC
Confidence            345899999999999999999987642        33223333222211000 122334444443 357888999532  


Q ss_pred             -HHH-HHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHH
Q 037205          207 -SQL-ESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEK  274 (439)
Q Consensus       207 -~~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~  274 (439)
                       +.+ +.|+..+.. ...|..|||||...         .+...+....++.+..++.+.-..++.+++.......  .++
T Consensus       392 ke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l--~~e  469 (617)
T PRK14086        392 KESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNA--PPE  469 (617)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCC--CHH
Confidence             111 222222211 13456788888743         2233344567889999999999999998874433222  256


Q ss_pred             HHHHHHHHhCCCcHHHH
Q 037205          275 LSSNVMKYVQGVPLALK  291 (439)
Q Consensus       275 ~~~~i~~~~~GlPLal~  291 (439)
                      ++.-|++.+.+..-.|.
T Consensus       470 Vi~yLa~r~~rnvR~Le  486 (617)
T PRK14086        470 VLEFIASRISRNIRELE  486 (617)
T ss_pred             HHHHHHHhccCCHHHHH
Confidence            67777777766644443

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.99  E-value=0.00027  Score=72.88  Aligned_cols=176  Identities=16%  Similarity=0.095  Sum_probs=104.1

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--HHHHHHHHHhcC-CCC---C
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL--LATKLISNLLKD-ENA---I  181 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--~~~~ll~~l~~~-~~~---~  181 (439)
                      ...++|-+..++.+.+.+..+. -...+.++|++|+||||+|+.++..+..     .-  -...-...+... ..+   +
T Consensus        15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei   93 (486)
T PRK14953         15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI   93 (486)
T ss_pred             HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence            3678999999999999887432 2456778999999999999998776421     00  000000011110 000   0


Q ss_pred             -----CcH---HHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHh-cCCCeEE
Q 037205          182 -----PGI---DLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRN-WGVSKIY  244 (439)
Q Consensus       182 -----~~~---~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~-~~~~~~~  244 (439)
                           .+.   +.+.....     +++-++|+|+++..  ...+.|+..+....+...+|++| +...+... ......+
T Consensus        94 daas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i  173 (486)
T PRK14953         94 DAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRF  173 (486)
T ss_pred             eCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEE
Confidence                 122   33333332     45568999999644  34556665554444455555544 43333322 1234578


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK  291 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~  291 (439)
                      ++.+++.++....+...+-..+...  ..+.+..+++.++|.+..+.
T Consensus       174 ~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al  218 (486)
T PRK14953        174 IFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAA  218 (486)
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence            9999999999888887664333221  24567788889999766443

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.99  E-value=1.8e-05  Score=81.33  Aligned_cols=148  Identities=20%  Similarity=0.346  Sum_probs=86.4

Q ss_pred             CCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----------HH--HHH
Q 037205          113 KSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-----------YL--LAT  168 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~--~~~  168 (439)
                      -.++.|.+..++++...+..           +-...+-+.++|++|+|||++|+.+++.+..           |+  ...
T Consensus       181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~  260 (512)
T TIGR03689       181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP  260 (512)
T ss_pred             HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence            35688899999998886532           1123567899999999999999999988642           11  000


Q ss_pred             HHHHHHhcCCCCCCcHHHHHHHh-----ccCCceEEecCCCCHH--------------HHHHHhcCCCCCC--CCcEEEE
Q 037205          169 KLISNLLKDENAIPGIDLNFRRL-----SRMKVLIFFYDVTCFS--------------QLESLMGSLDWLT--PVSRIIL  227 (439)
Q Consensus       169 ~ll~~l~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~~--~gs~Iii  227 (439)
                      .++....+..  ......+.+..     .+++++|+||+++..-              .+..|+..+....  .+..||.
T Consensus       261 eLl~kyvGet--e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~  338 (512)
T TIGR03689       261 ELLNKYVGET--ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIG  338 (512)
T ss_pred             hhcccccchH--HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEe
Confidence            1111000000  00111122221     2468999999996321              1234443333222  3444555


Q ss_pred             EeCchHHHHh-----cCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          228 TTRNKQVLRN-----WGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       228 TTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                      ||..+.....     ...+..++++..+.++..++|..+.
T Consensus       339 ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l  378 (512)
T TIGR03689       339 ASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL  378 (512)
T ss_pred             ccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence            6654433221     1345678999999999999998876

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=97.97  E-value=0.00015  Score=75.04  Aligned_cols=176  Identities=15%  Similarity=0.110  Sum_probs=107.4

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---------HH--HHHHHHHHHh----c-
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---------YL--LATKLISNLL----K-  176 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~--~~~~ll~~l~----~-  176 (439)
                      -.++||-+...+.|...+..+. -.....++|++|+||||+|+.+++.+-.         ..  ....+.....    . 
T Consensus        13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el   91 (535)
T PRK08451         13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM   91 (535)
T ss_pred             HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence            3679999999999998886332 2446689999999999999988776521         00  0000000000    0 


Q ss_pred             CCCCCCcHHHHHHHhc--------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHh-cCCCeEE
Q 037205          177 DENAIPGIDLNFRRLS--------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIY  244 (439)
Q Consensus       177 ~~~~~~~~~~l~~~l~--------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~  244 (439)
                      ......+++.+++...        +++-++|+|+++..  +..++|+..+....+.+++|++|.++. +... ......+
T Consensus        92 daas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~  171 (535)
T PRK08451         92 DAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHF  171 (535)
T ss_pred             ccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeE
Confidence            0000012344444332        34568899999654  345666665554456677777776542 2211 1234688


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK  291 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~  291 (439)
                      ++.+++.++....+.+.+-..+...  ..+.+..|++.++|.+.-+.
T Consensus       172 ~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~al  216 (535)
T PRK08451        172 RFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDTL  216 (535)
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHH
Confidence            9999999999988877664433222  25677889999999885443

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.96  E-value=3e-05  Score=85.33  Aligned_cols=141  Identities=11%  Similarity=0.108  Sum_probs=79.7

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCC-
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDEN-  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~-  179 (439)
                      ..++||+.++..+.+.|...  ....+.++|.+|+|||+||+.+...+..     .+        -...++.   +... 
T Consensus       178 ~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a---g~~~~  252 (857)
T PRK10865        178 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA---GAKYR  252 (857)
T ss_pred             CcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh---ccchh
Confidence            56999999999999988742  3345669999999999999999888632     00        0111110   0100 


Q ss_pred             -CCC-cHHHHHHHh--ccCCceEEecCCCCHH---------HHHHHhcCCCCCCCC-cEEEE-EeCchHHHHh-------
Q 037205          180 -AIP-GIDLNFRRL--SRMKVLIFFYDVTCFS---------QLESLMGSLDWLTPV-SRIIL-TTRNKQVLRN-------  237 (439)
Q Consensus       180 -~~~-~~~~l~~~l--~~~~~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~Iii-TTR~~~v~~~-------  237 (439)
                       ... ....+...+  .+.+++|++|++....         +...++.+..  ..| -++|- ||.++ ....       
T Consensus       253 g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e-~r~~~~~d~al  329 (857)
T PRK10865        253 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDE-YRQYIEKDAAL  329 (857)
T ss_pred             hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHH-HHHHhhhcHHH
Confidence             110 112222222  2468999999996432         1222322221  233 34554 44443 2111       


Q ss_pred             cCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          238 WGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       238 ~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                      ......+.+...+.++...++....
T Consensus       330 ~rRf~~i~v~eP~~~~~~~iL~~l~  354 (857)
T PRK10865        330 ERRFQKVFVAEPSVEDTIAILRGLK  354 (857)
T ss_pred             HhhCCEEEeCCCCHHHHHHHHHHHh
Confidence            1123466788889999998886543

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.95  E-value=5.1e-05  Score=63.66  Aligned_cols=93  Identities=23%  Similarity=0.260  Sum_probs=58.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-----------HH----------HHHHHHHHHhcCCCC-CC---cHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-----------YL----------LATKLISNLLKDENA-IP---GIDLNFRRL  191 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~----------~~~~ll~~l~~~~~~-~~---~~~~l~~~l  191 (439)
                      -+.+.|+|.+|+|||++++.+.+....           |+          +...++..+...... ..   ..+.+.+.+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l   83 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL   83 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence            467899999999999999999988642           11          556666666555443 22   446666666


Q ss_pred             ccCCc-eEEecCCCCH---HHHHHHhcCCCCCCCCcEEEEEeCc
Q 037205          192 SRMKV-LIFFYDVTCF---SQLESLMGSLDWLTPVSRIILTTRN  231 (439)
Q Consensus       192 ~~~~~-LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~  231 (439)
                      ...+. +||+|+++..   ..++.+.....  ..+.++|+..+.
T Consensus        84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~  125 (131)
T PF13401_consen   84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP  125 (131)
T ss_dssp             HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred             HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence            66554 9999999765   33455543333  566777777664

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=97.95  E-value=0.00025  Score=66.89  Aligned_cols=169  Identities=16%  Similarity=0.171  Sum_probs=105.8

Q ss_pred             CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HHHHHHHHHHHhcC-CCCCC-----
Q 037205          112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YLLATKLISNLLKD-ENAIP-----  182 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~~~~~ll~~l~~~-~~~~~-----  182 (439)
                      ...+++|-+..+.-|.+.+..  ...+....||++|.|||+.|+.++..+-.   |-  ..++ .+... ...++     
T Consensus        34 t~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~--~rvl-~lnaSderGisvvr~K  108 (346)
T KOG0989|consen   34 TFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFP--CRVL-ELNASDERGISVVREK  108 (346)
T ss_pred             cHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccc--cchh-hhcccccccccchhhh
Confidence            346799999999999998874  56788999999999999999987766431   00  0000 00000 00111     


Q ss_pred             --cHHHHHHHhc---c---CC-ceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchHH-HHhc-CCCeEEEcCCC
Q 037205          183 --GIDLNFRRLS---R---MK-VLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQV-LRNW-GVSKIYEMEAL  249 (439)
Q Consensus       183 --~~~~l~~~l~---~---~~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~-~~~~~~~l~~L  249 (439)
                        ....+.-...   +   .+ -.+|||+++..  +.|.+|......+...++.|+.+..-.. .... .....|..++|
T Consensus       109 ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L  188 (346)
T KOG0989|consen  109 IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKL  188 (346)
T ss_pred             hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCc
Confidence              1111111110   0   22 47789999865  4588888777766777776654443322 1111 12356889999


Q ss_pred             CHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          250 EYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       250 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                      ..++..+-+...+-.+...-+  .+..+.|++.++|--
T Consensus       189 ~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdL  224 (346)
T KOG0989|consen  189 KDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDL  224 (346)
T ss_pred             chHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcH
Confidence            999999888888855543332  567888999998753

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.94  E-value=0.0002  Score=75.86  Aligned_cols=176  Identities=16%  Similarity=0.133  Sum_probs=105.7

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-------HHHHHHHHHhcCC------
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-------LATKLISNLLKDE------  178 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-------~~~~ll~~l~~~~------  178 (439)
                      ..++|.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+--  ..       -.-.....+....      
T Consensus        16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~e   94 (620)
T PRK14948         16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIE   94 (620)
T ss_pred             hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEE
Confidence            678999999999999887432 2356789999999999999998877531  00       0000111111100      


Q ss_pred             --C-CCCcHHHHHHHh---c-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeE
Q 037205          179 --N-AIPGIDLNFRRL---S-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKI  243 (439)
Q Consensus       179 --~-~~~~~~~l~~~l---~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~  243 (439)
                        . ....++.+++.+   .     +++-++|+|+++..  .....|+..+......+.+|++|.+. .+.... .....
T Consensus        95 i~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~  174 (620)
T PRK14948         95 IDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQR  174 (620)
T ss_pred             EeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeE
Confidence              0 111333333332   2     34568899999754  44666666655433455555555433 333332 23467


Q ss_pred             EEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHH
Q 037205          244 YEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKV  292 (439)
Q Consensus       244 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~  292 (439)
                      +++..++.++....+.+.+-......  ..+.+..+++.++|.+..+..
T Consensus       175 ~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~~  221 (620)
T PRK14948        175 FDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAES  221 (620)
T ss_pred             EEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence            88889999998887777664322211  145688899999998765433

>PRK12377 putative replication protein; Provisional

Probab=97.91  E-value=6.4e-05  Score=70.46  Aligned_cols=66  Identities=15%  Similarity=0.151  Sum_probs=41.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCC
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDV  203 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv  203 (439)
                      ...+.|+|.+|+|||+||.++++.+..      |+...+++..+............+.+.+ .+.-||||||+
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l-~~~dLLiIDDl  172 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL-CKVDLLVLDEI  172 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh-cCCCEEEEcCC
Confidence            457889999999999999999998765      3323344444432211111112233333 35668999999

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=97.89  E-value=0.00041  Score=72.93  Aligned_cols=174  Identities=13%  Similarity=0.105  Sum_probs=103.3

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--H-----HHHHHHHHHHhcC-CCC---C
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--Y-----LLATKLISNLLKD-ENA---I  181 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f-----~~~~~ll~~l~~~-~~~---~  181 (439)
                      ..+++|.+...+.+.+.+..+. -...+.++|+.|+||||+|+.+...+-.  .     .-.-.....+... ..+   +
T Consensus        15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~ei   93 (559)
T PRK05563         15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEI   93 (559)
T ss_pred             HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEe
Confidence            3689999999999999887432 3456778999999999999998765421  0     0000001111111 001   1


Q ss_pred             -----CcHHH---HHHHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHhc-CCCeEE
Q 037205          182 -----PGIDL---NFRRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRNW-GVSKIY  244 (439)
Q Consensus       182 -----~~~~~---l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~  244 (439)
                           ..++.   +....     .++.-++|+|+++..  .....|+..+........+|++| ....+.... .....+
T Consensus        94 daas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~  173 (559)
T PRK05563         94 DAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRF  173 (559)
T ss_pred             eccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEE
Confidence                 12333   33332     235568889999754  44666666554433455555444 433333322 234678


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      ++.+++.++..+.+...+-..+...  ..+.+..+++.++|.+..
T Consensus       174 ~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~  216 (559)
T PRK05563        174 DFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRD  216 (559)
T ss_pred             ecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence            8999999999888887764333222  145677888888887653

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.88  E-value=0.00039  Score=73.35  Aligned_cols=179  Identities=15%  Similarity=0.162  Sum_probs=105.0

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----HHHHHHHHHhcC-CCC---C
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----LATKLISNLLKD-ENA---I  181 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----~~~~ll~~l~~~-~~~---~  181 (439)
                      ..++||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.  ..     ........+... ..+   +
T Consensus        15 f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ei   93 (576)
T PRK14965         15 FSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEI   93 (576)
T ss_pred             HHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeee
Confidence            367999999999999888632 22456789999999999999998776521  00     000000111110 000   1


Q ss_pred             -----CcH---HHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHhc-CCCeEE
Q 037205          182 -----PGI---DLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRNW-GVSKIY  244 (439)
Q Consensus       182 -----~~~---~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~  244 (439)
                           ..+   +.+...+.     ++.-++|+|+++..  ...+.|+..+....+.+.+|++| ....+.... .....+
T Consensus        94 d~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~  173 (576)
T PRK14965         94 DGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRF  173 (576)
T ss_pred             eccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhh
Confidence                 122   23333332     34457889999654  34556665554444566666544 444444332 234578


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc-HHHHHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP-LALKVLG  294 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g  294 (439)
                      ++.+++.++....+...+-..+...  ..+.+..+++.++|.. .|+..+-
T Consensus       174 ~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~lr~al~~Ld  222 (576)
T PRK14965        174 DFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSMRDSLSTLD  222 (576)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence            8999999998887776653333222  2466778889998865 4555543

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.87  E-value=5.7e-05  Score=81.54  Aligned_cols=144  Identities=17%  Similarity=0.207  Sum_probs=80.8

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HHHH-----HHHHHHHh-cCCC--CC
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----YLLA-----TKLISNLL-KDEN--AI  181 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~~~-----~~ll~~l~-~~~~--~~  181 (439)
                      ..++||+.++.++.+.|....  ..-+.++|.+|+|||++|+.++.....    +.+.     ..-+..+. +...  +.
T Consensus       186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~  263 (758)
T PRK11034        186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF  263 (758)
T ss_pred             CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhH
Confidence            469999999999999887532  234568999999999999999877532    1100     00001111 1110  11


Q ss_pred             C-cHHHHHHHh-ccCCceEEecCCCCH----------HHHHHHhcCCCCCCCC-cEEEEEeCchHHHHh-------cCCC
Q 037205          182 P-GIDLNFRRL-SRMKVLIFFYDVTCF----------SQLESLMGSLDWLTPV-SRIILTTRNKQVLRN-------WGVS  241 (439)
Q Consensus       182 ~-~~~~l~~~l-~~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~g-s~IiiTTR~~~v~~~-------~~~~  241 (439)
                      . ....+...+ +..+.+|++|+++..          .+...++.+..  ..| -++|-+|..+.....       ....
T Consensus       264 e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~~~~~~D~AL~rRF  341 (758)
T PRK11034        264 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSNIFEKDRALARRF  341 (758)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHHHHhhccHHHHhhC
Confidence            1 122222223 346789999999532          12222222211  123 344444433322111       1233


Q ss_pred             eEEEcCCCCHHHHHHHHHHh
Q 037205          242 KIYEMEALEYHHALELFSRH  261 (439)
Q Consensus       242 ~~~~l~~L~~~ea~~Lf~~~  261 (439)
                      ..+.+++++.++..+++...
T Consensus       342 q~I~v~ePs~~~~~~IL~~~  361 (758)
T PRK11034        342 QKIDITEPSIEETVQIINGL  361 (758)
T ss_pred             cEEEeCCCCHHHHHHHHHHH
Confidence            57999999999999998754

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.86  E-value=0.0005  Score=68.34  Aligned_cols=152  Identities=20%  Similarity=0.292  Sum_probs=96.9

Q ss_pred             CCCCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhHHH------------------HHHHH
Q 037205          111 DNKSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISRYL------------------LATKL  170 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~------------------~~~~l  170 (439)
                      ..+..++||+.++..+.+++..  +.+..+.+=|.|-+|.|||.+...++.+...|.                  +...+
T Consensus       147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI  226 (529)
T KOG2227|consen  147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI  226 (529)
T ss_pred             CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence            3457899999999999998864  455678889999999999999999998887633                  44555


Q ss_pred             HHHHhcCCC----CCCcHHHHHHHhcc--CCceEEecCCCCHHH--HHHHhcCCCCC-CCCcEEEEEeCch------HHH
Q 037205          171 ISNLLKDEN----AIPGIDLNFRRLSR--MKVLIFFYDVTCFSQ--LESLMGSLDWL-TPVSRIILTTRNK------QVL  235 (439)
Q Consensus       171 l~~l~~~~~----~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~IiiTTR~~------~v~  235 (439)
                      .+.+.....    ..+..+.+......  ..+|+|||..+....  -..|...+.|- -+++|+|+.--..      ..+
T Consensus       227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L  306 (529)
T KOG2227|consen  227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL  306 (529)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence            555533222    22234445444444  358999999865431  11222222221 2566665432211      111


Q ss_pred             Hhc-----CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          236 RNW-----GVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       236 ~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                      ...     .....+..++-+.++-.++|....
T Consensus       307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl  338 (529)
T KOG2227|consen  307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL  338 (529)
T ss_pred             hhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence            211     123567788999999999998876

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.84  E-value=0.0011  Score=70.44  Aligned_cols=173  Identities=15%  Similarity=0.141  Sum_probs=104.6

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HH--HHHHHHHHHhcC--C-----
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YL--LATKLISNLLKD--E-----  178 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~--~~~~ll~~l~~~--~-----  178 (439)
                      .+++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+...+.-      ..  -.-.-...+...  .     
T Consensus        17 ~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~l   95 (614)
T PRK14971         17 ESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHEL   95 (614)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEe
Confidence            67999999999999988732 12456889999999999999987776420      00  000000000000  0     


Q ss_pred             --CCCCcHHHHHHHh---c-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEE-EeCchHHHHhc-CCCeEE
Q 037205          179 --NAIPGIDLNFRRL---S-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIIL-TTRNKQVLRNW-GVSKIY  244 (439)
Q Consensus       179 --~~~~~~~~l~~~l---~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~~-~~~~~~  244 (439)
                        .+....+.++..+   .     +++-++|+|+++..  ...+.|+..+......+.+|+ ||....+.... .....+
T Consensus        96 d~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv  175 (614)
T PRK14971         96 DAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIF  175 (614)
T ss_pred             cccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhhee
Confidence              0001233333332   2     34558899999654  346666665554445666655 44544444432 345689


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      ++.+++.++....+.+.+-..+...  ..+.+..|+..++|..--
T Consensus       176 ~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr~  218 (614)
T PRK14971        176 DFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMRD  218 (614)
T ss_pred             ecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence            9999999999988887664433222  245678889999986643

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.84  E-value=0.0005  Score=63.50  Aligned_cols=88  Identities=16%  Similarity=0.297  Sum_probs=57.0

Q ss_pred             CCCCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhcCCCCCCcHHHHH
Q 037205          111 DNKSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNF  188 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~~~~~~~~~~~l~  188 (439)
                      .....++|.+.+.+.|.+-...  ......-+.+||..|.|||+|++++.+.+..     +=++-+.-...++.....+.
T Consensus        24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~-----~GLRlIev~k~~L~~l~~l~   98 (249)
T PF05673_consen   24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD-----QGLRLIEVSKEDLGDLPELL   98 (249)
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh-----cCceEEEECHHHhccHHHHH
Confidence            4557899999999888874321  2234566788999999999999999888653     00111111111222344455


Q ss_pred             HHhc--cCCceEEecCC
Q 037205          189 RRLS--RMKVLIFFYDV  203 (439)
Q Consensus       189 ~~l~--~~~~LlVlDdv  203 (439)
                      ..++  ..+++|.+||+
T Consensus        99 ~~l~~~~~kFIlf~DDL  115 (249)
T PF05673_consen   99 DLLRDRPYKFILFCDDL  115 (249)
T ss_pred             HHHhcCCCCEEEEecCC
Confidence            5554  36899999999

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.82  E-value=5.6e-05  Score=63.31  Aligned_cols=24  Identities=38%  Similarity=0.433  Sum_probs=21.4

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      |.|+|++|+||||+|+.+++....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~   24 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGF   24 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTS
T ss_pred             CEEECcCCCCeeHHHHHHHhhccc
Confidence            579999999999999999988753

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=97.81  E-value=4.1e-05  Score=65.20  Aligned_cols=70  Identities=29%  Similarity=0.352  Sum_probs=58.3

Q ss_pred             cccchHHHHHHHHhhhhc-CCCEEEEEeeecCccccccccccchhhHHHHHHHhhhchHHHHHHHHHHHHHh
Q 037205            4 CSLLIGLKLVLFHLTQKE-HAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAV   74 (439)
Q Consensus         4 ~~~~~~~el~~i~~~~~~-~~~~vlPiFy~v~ps~vr~q~~~~~~~~~~~~~~~~~~~e~v~~W~~aL~~~~   74 (439)
                      .|.||..|+..+.++... ....||||+|+..|+++..+.+.++.++..+..++.....+ ..|++++..++
T Consensus        68 ~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~  138 (140)
T smart00255       68 ESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP  138 (140)
T ss_pred             cChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence            589999999999998865 67899999999999999999999999998875555544333 68999887765

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=97.80  E-value=0.00032  Score=63.61  Aligned_cols=47  Identities=28%  Similarity=0.309  Sum_probs=37.6

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.++||-+.-++.+.-.-.  +.+.+-+.|.||||+||||-+..+++.+
T Consensus        26 l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   26 LQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             HHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence            3678999988888776655  3457788899999999999988877665

>PRK06526 transposase; Provisional

Probab=97.79  E-value=4.4e-05  Score=71.99  Aligned_cols=93  Identities=16%  Similarity=0.124  Sum_probs=51.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH----
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF----  206 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----  206 (439)
                      ..-+.|+|++|+|||+||..+......      |....+++..+......-.....+. .+. +.-|||+||+...    
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~-~l~-~~dlLIIDD~g~~~~~~  175 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELV-KLG-RYPLLIVDEVGYIPFEP  175 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHH-Hhc-cCCEEEEcccccCCCCH
Confidence            446889999999999999999877654      5444445555433221111122222 232 3568999999532    


Q ss_pred             HHHHHHhcCCCC-CCCCcEEEEEeCch
Q 037205          207 SQLESLMGSLDW-LTPVSRIILTTRNK  232 (439)
Q Consensus       207 ~~~~~l~~~~~~-~~~gs~IiiTTR~~  232 (439)
                      ...+.+...+.. ...++ +|+||..+
T Consensus       176 ~~~~~L~~li~~r~~~~s-~IitSn~~  201 (254)
T PRK06526        176 EAANLFFQLVSSRYERAS-LIVTSNKP  201 (254)
T ss_pred             HHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence            221222222211 12344 88888754

>PRK08116 hypothetical protein; Validated

Probab=97.78  E-value=3.1e-05  Score=73.73  Aligned_cols=94  Identities=19%  Similarity=0.248  Sum_probs=54.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCC--CCCcHHHHHHHhccCCceEEecCCCC--HH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDEN--AIPGIDLNFRRLSRMKVLIFFYDVTC--FS  207 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~--~~~~~~~l~~~l~~~~~LlVlDdv~~--~~  207 (439)
                      ..+.|+|.+|+|||.||.++++.+..      |+....++..+.....  .......+.+.+.+-. ||||||+..  ..
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d-lLviDDlg~e~~t  193 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD-LLILDDLGAERDT  193 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCC-EEEEecccCCCCC
Confidence            45789999999999999999998764      3333444444432211  1112334445555444 899999932  11


Q ss_pred             H--HHHHhcCCCC-CCCCcEEEEEeCch
Q 037205          208 Q--LESLMGSLDW-LTPVSRIILTTRNK  232 (439)
Q Consensus       208 ~--~~~l~~~~~~-~~~gs~IiiTTR~~  232 (439)
                      .  ...|...+.. ...+..+|+||...
T Consensus       194 ~~~~~~l~~iin~r~~~~~~~IiTsN~~  221 (268)
T PRK08116        194 EWAREKVYNIIDSRYRKGLPTIVTTNLS  221 (268)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            1  2223222211 23566789998743

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.77  E-value=7e-05  Score=76.95  Aligned_cols=175  Identities=15%  Similarity=0.101  Sum_probs=94.2

Q ss_pred             CCCcccccchHHHHHhhh---cc-----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCC
Q 037205          113 KSQLVGVESRVEEIESLL---SV-----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAI  181 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L---~~-----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~  181 (439)
                      ..++-|.+...+.+.+..   ..     +-...+-|.++|++|+|||.+|+.+++.... |+  -...+.....+... .
T Consensus       227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese-~  305 (489)
T CHL00195        227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESE-S  305 (489)
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHH-H
Confidence            356778776666555422   11     1234567899999999999999999988654 21  11111111111100 0


Q ss_pred             CcHHHHHHHhccCCceEEecCCCCHH--------------HHHHHhcCCCCCCCCcEEEEEeCchHHHH-----hcCCCe
Q 037205          182 PGIDLNFRRLSRMKVLIFFYDVTCFS--------------QLESLMGSLDWLTPVSRIILTTRNKQVLR-----NWGVSK  242 (439)
Q Consensus       182 ~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-----~~~~~~  242 (439)
                      ...+.+...-...+++|++|+++..-              .+..++..+.....+--||.||.+.....     ....+.
T Consensus       306 ~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~  385 (489)
T CHL00195        306 RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDE  385 (489)
T ss_pred             HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCe
Confidence            01122222223578999999996321              01222222222223344566776554322     123567


Q ss_pred             EEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          243 IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      .+.++..+.++-.++|..+..+.. +..........+++.+.|.-=|
T Consensus       386 ~i~v~lP~~~eR~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfSGA  431 (489)
T CHL00195        386 IFFLDLPSLEEREKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFSGA  431 (489)
T ss_pred             EEEeCCcCHHHHHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCCHH
Confidence            888999999999999988764322 1110112245677777766443

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.74  E-value=0.00033  Score=65.55  Aligned_cols=81  Identities=12%  Similarity=0.155  Sum_probs=46.5

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCC-CCCcHHHHHHHhccCC
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDEN-AIPGIDLNFRRLSRMK  195 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~-~~~~~~~l~~~l~~~~  195 (439)
                      +..+.+....-......+.++|.+|+|||+||..+++.+..      |+...+++..+..... .......+.+.+. +.
T Consensus        85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~-~~  163 (244)
T PRK07952         85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS-NV  163 (244)
T ss_pred             HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc-cC
Confidence            34444444322223457889999999999999999998754      3323333333322211 1112233444555 45


Q ss_pred             ceEEecCCC
Q 037205          196 VLIFFYDVT  204 (439)
Q Consensus       196 ~LlVlDdv~  204 (439)
                      =+|||||+.
T Consensus       164 dlLvIDDig  172 (244)
T PRK07952        164 DLLVIDEIG  172 (244)
T ss_pred             CEEEEeCCC
Confidence            588889994

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.72  E-value=0.00015  Score=79.05  Aligned_cols=170  Identities=15%  Similarity=0.208  Sum_probs=95.6

Q ss_pred             CCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205          113 KSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE  178 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~  178 (439)
                      -.++.|.+...+.|.+.+..           +-...+-+.++|++|+|||+||+.+++.... |+  ...++++...+..
T Consensus       452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGes  531 (733)
T TIGR01243       452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGES  531 (733)
T ss_pred             hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcH
Confidence            35678888887777775531           1123456889999999999999999987654 32  1112222111110


Q ss_pred             CCCCcHHHH-HHHhccCCceEEecCCCCH--------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHh----
Q 037205          179 NAIPGIDLN-FRRLSRMKVLIFFYDVTCF--------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRN----  237 (439)
Q Consensus       179 ~~~~~~~~l-~~~l~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~----  237 (439)
                        ...+..+ ...-...+.+|+||+++..              ..+..|+..+...  ..+--||.||..+.....    
T Consensus       532 --e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allR  609 (733)
T TIGR01243       532 --EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLR  609 (733)
T ss_pred             --HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcC
Confidence              0012222 2222356789999998532              1133344333321  233445667765543322    


Q ss_pred             -cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          238 -WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       238 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                       -..+..+.++..+.++-.++|..+.-+... .+  ......+++.+.|.-
T Consensus       610 pgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~--~~~l~~la~~t~g~s  657 (733)
T TIGR01243       610 PGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AE--DVDLEELAEMTEGYT  657 (733)
T ss_pred             CCccceEEEeCCcCHHHHHHHHHHHhcCCCC-Cc--cCCHHHHHHHcCCCC
Confidence             134678889999999999998766522221 11  111456667777764

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.72  E-value=0.0004  Score=73.38  Aligned_cols=52  Identities=23%  Similarity=0.311  Sum_probs=42.3

Q ss_pred             CCCCcccccchHHHHHhhhccC---CCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          112 NKSQLVGVESRVEEIESLLSVE---SKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ...+++|-+..++++..++...   ....+++.|+|++|+||||+++.++..+..
T Consensus        82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~  136 (637)
T TIGR00602        82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI  136 (637)
T ss_pred             CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            3477999999999999988642   233567999999999999999999877653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.69  E-value=0.00011  Score=80.03  Aligned_cols=172  Identities=13%  Similarity=0.184  Sum_probs=92.7

Q ss_pred             CCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205          112 NKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD  177 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~  177 (439)
                      .-.++.|.+..++.|.+.+..           +-...+.|.++|++|+|||+||+.+++.... |+  ....+.....+.
T Consensus       176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~  255 (733)
T TIGR01243       176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGE  255 (733)
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccH
Confidence            345688999999998887632           1123467889999999999999999887654 21  111111110000


Q ss_pred             CCCCCcHHHHHHHhccCCceEEecCCCCH-------------HHHHHHhcCCCCC-CCCcEEEE-EeCchHHH-Hhc---
Q 037205          178 ENAIPGIDLNFRRLSRMKVLIFFYDVTCF-------------SQLESLMGSLDWL-TPVSRIIL-TTRNKQVL-RNW---  238 (439)
Q Consensus       178 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~-~~gs~Iii-TTR~~~v~-~~~---  238 (439)
                      . .......+.......+.+|+||+++..             .....|...+... ..+..++| ||....-. ..+   
T Consensus       256 ~-~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~  334 (733)
T TIGR01243       256 S-EERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRP  334 (733)
T ss_pred             H-HHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCc
Confidence            0 000112223333456789999998532             1123333333222 22333444 55433211 111   


Q ss_pred             -CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          239 -GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       239 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                       .....+.++..+.++-.+++..+.-.... .+  ......+++.+.|..
T Consensus       335 gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~--d~~l~~la~~t~G~~  381 (733)
T TIGR01243       335 GRFDREIVIRVPDKRARKEILKVHTRNMPL-AE--DVDLDKLAEVTHGFV  381 (733)
T ss_pred             hhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cc--ccCHHHHHHhCCCCC
Confidence             23456788888888888888755422111 11  122566777777764

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK08181 transposase; Validated

Probab=97.68  E-value=5.4e-05  Score=71.85  Aligned_cols=93  Identities=17%  Similarity=0.205  Sum_probs=51.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCC----HH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTC----FS  207 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~----~~  207 (439)
                      .-+.++|++|+|||.||..+.+....      |+...+++..+.....+. ......+.+. +.-||||||+..    ..
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~-~~~~~l~~l~-~~dLLIIDDlg~~~~~~~  184 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARREL-QLESAIAKLD-KFDLLILDDLAYVTKDQA  184 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCC-cHHHHHHHHh-cCCEEEEeccccccCCHH
Confidence            45889999999999999999877654      444444555443322211 1222223332 445999999942    12


Q ss_pred             HHHHHhcCCCCCCCCcEEEEEeCch
Q 037205          208 QLESLMGSLDWLTPVSRIILTTRNK  232 (439)
Q Consensus       208 ~~~~l~~~~~~~~~gs~IiiTTR~~  232 (439)
                      ..+.|...+...-.+..+||||..+
T Consensus       185 ~~~~Lf~lin~R~~~~s~IiTSN~~  209 (269)
T PRK08181        185 ETSVLFELISARYERRSILITANQP  209 (269)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEcCCC
Confidence            1222322222111123588888754

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.68  E-value=0.0017  Score=70.76  Aligned_cols=104  Identities=13%  Similarity=0.226  Sum_probs=62.0

Q ss_pred             CCCcccccchHHHHHhhhccC------CC-CeeEEEEecCCCChhHHHHHHHHhHHhH-HH-------HHHHHHHHHhcC
Q 037205          113 KSQLVGVESRVEEIESLLSVE------SK-DVYALGIWGIGGIGKTTIARATFDKISR-YL-------LATKLISNLLKD  177 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~-------~~~~ll~~l~~~  177 (439)
                      ...++|.+..++.+.+.+...      .+ ...++.++|++|+|||+||+.++..+.. ++       ....-...+.+.
T Consensus       453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~  532 (731)
T TIGR02639       453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGA  532 (731)
T ss_pred             hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcC
Confidence            356889998888888876531      11 2446889999999999999999887643 11       111122333333


Q ss_pred             CC---CCCcHHHHHHHhccCC-ceEEecCCCCH--HHHHHHhcCC
Q 037205          178 EN---AIPGIDLNFRRLSRMK-VLIFFYDVTCF--SQLESLMGSL  216 (439)
Q Consensus       178 ~~---~~~~~~~l~~~l~~~~-~LlVlDdv~~~--~~~~~l~~~~  216 (439)
                      ..   ..+....+.+.++.++ -+++||+++..  +....|+..+
T Consensus       533 ~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l  577 (731)
T TIGR02639       533 PPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM  577 (731)
T ss_pred             CCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence            22   1112233455555444 59999999643  3344444443

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=97.67  E-value=0.0011  Score=64.95  Aligned_cols=151  Identities=14%  Similarity=0.101  Sum_probs=88.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-----HH------HHHHHHHHHh-------cCCCCCC-cHHHHHHH---hc--
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-----YL------LATKLISNLL-------KDENAIP-GIDLNFRR---LS--  192 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------~~~~ll~~l~-------~~~~~~~-~~~~l~~~---l~--  192 (439)
                      ...+.++|+.|+||||+|+.++..+--     --      ....+...-.       ....... .++.+++.   +.  
T Consensus        22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~  101 (328)
T PRK05707         22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT  101 (328)
T ss_pred             ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence            557889999999999999988766420     00      0000000000       0000000 23334332   22  


Q ss_pred             ---cCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcC
Q 037205          193 ---RMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSRHAFKR  265 (439)
Q Consensus       193 ---~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~  265 (439)
                         +++-++|+|+++.  .+....|+..+..-..++.+|+||.+.. +.... .....+.+.+++.+++.+.+.... ..
T Consensus       102 ~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~  180 (328)
T PRK05707        102 AQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE  180 (328)
T ss_pred             cccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc
Confidence               3344567799974  4456666665554446777777777653 33332 234678999999999998887643 11


Q ss_pred             CCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205          266 NHPDVGYEKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~GlPLal~~~  293 (439)
                           ...+.+..++..++|.|+....+
T Consensus       181 -----~~~~~~~~~l~la~Gsp~~A~~l  203 (328)
T PRK05707        181 -----SDERERIELLTLAGGSPLRALQL  203 (328)
T ss_pred             -----CChHHHHHHHHHcCCCHHHHHHH
Confidence                 11344567789999999765444

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00015  Score=75.47  Aligned_cols=148  Identities=18%  Similarity=0.299  Sum_probs=88.3

Q ss_pred             CCCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH------HHHHHHHHHhcCCC--
Q 037205          113 KSQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL------LATKLISNLLKDEN--  179 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~------~~~~ll~~l~~~~~--  179 (439)
                      +.+-.|.+...+.|.+.|.-    ..-+-++++++|+||+|||+|++.++.-+.. |+      +..+  ..+.+...  
T Consensus       322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDE--AEIRGHRRTY  399 (782)
T COG0466         322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDE--AEIRGHRRTY  399 (782)
T ss_pred             cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccH--HHhccccccc
Confidence            35568999999999998853    2334589999999999999999999987655 44      0000  01111111  


Q ss_pred             --CCC--cHHHHHHHhccCCceEEecCCCCHHH------HHHHhcCCCC-----CC--------CCcEEE-EEeCch-H-
Q 037205          180 --AIP--GIDLNFRRLSRMKVLIFFYDVTCFSQ------LESLMGSLDW-----LT--------PVSRII-LTTRNK-Q-  233 (439)
Q Consensus       180 --~~~--~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~-----~~--------~gs~Ii-iTTR~~-~-  233 (439)
                        ..+  .++. ......++-|++||.++....      ..+|+..+..     |.        .=|.|+ |||-|. . 
T Consensus       400 IGamPGrIiQ~-mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~t  478 (782)
T COG0466         400 IGAMPGKIIQG-MKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDT  478 (782)
T ss_pred             cccCChHHHHH-HHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcccc
Confidence              111  1122 223345788999999964321      2333333221     10        114554 555543 1 


Q ss_pred             -HHHhcCCCeEEEcCCCCHHHHHHHHHHhhh
Q 037205          234 -VLRNWGVSKIYEMEALEYHHALELFSRHAF  263 (439)
Q Consensus       234 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~  263 (439)
                       ..+.+....++++.+-+++|-.++-.++..
T Consensus       479 IP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li  509 (782)
T COG0466         479 IPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI  509 (782)
T ss_pred             CChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence             123344568999999999999888777653

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=97.62  E-value=0.00045  Score=67.02  Aligned_cols=149  Identities=21%  Similarity=0.329  Sum_probs=89.8

Q ss_pred             CCCcccccchHHHHHhhhccCCCCee-EEEEecCCCChhHHHHHHHHhHHhH---HH----------HHHHHHHHHhc-C
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVY-ALGIWGIGGIGKTTIARATFDKISR---YL----------LATKLISNLLK-D  177 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~---f~----------~~~~ll~~l~~-~  177 (439)
                      .+.+.+|+.++..+..++...+...+ .|-|+|-.|.|||.+.+++++....   |+          +...++.+... .
T Consensus         5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d   84 (438)
T KOG2543|consen    5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLAD   84 (438)
T ss_pred             ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCC
Confidence            45788999999999999986555444 4589999999999999999988733   54          55666666641 1


Q ss_pred             CC--CCC--------cHHHHHH--Hhc--cCCceEEecCCCCHHHHH-----HHhcCCCCCCCCcEEEEEeCch---HHH
Q 037205          178 EN--AIP--------GIDLNFR--RLS--RMKVLIFFYDVTCFSQLE-----SLMGSLDWLTPVSRIILTTRNK---QVL  235 (439)
Q Consensus       178 ~~--~~~--------~~~~l~~--~l~--~~~~LlVlDdv~~~~~~~-----~l~~~~~~~~~gs~IiiTTR~~---~v~  235 (439)
                      .+  ...        .+..+.+  ...  ++.++|||||++...+.+     .+.....-.....-.|+++-..   ...
T Consensus        85 ~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~  164 (438)
T KOG2543|consen   85 KDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYL  164 (438)
T ss_pred             CchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhh
Confidence            11  111        1222222  222  358999999997655422     2211110011222334444322   222


Q ss_pred             HhcCCCe--EEEcCCCCHHHHHHHHHHh
Q 037205          236 RNWGVSK--IYEMEALEYHHALELFSRH  261 (439)
Q Consensus       236 ~~~~~~~--~~~l~~L~~~ea~~Lf~~~  261 (439)
                      ..+|+..  ++..+.-+.+|..+++.+.
T Consensus       165 ~n~g~~~i~~l~fP~Ys~~e~~~Il~~~  192 (438)
T KOG2543|consen  165 INTGTLEIVVLHFPQYSVEETQVILSRD  192 (438)
T ss_pred             cccCCCCceEEecCCCCHHHHHHHHhcC
Confidence            2245443  4567888999998888654

>PRK09183 transposase/IS protein; Provisional

Probab=97.57  E-value=7.3e-05  Score=70.81  Aligned_cols=93  Identities=18%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCC----HH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTC----FS  207 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~----~~  207 (439)
                      ..+.|+|++|+|||+||..+++....      |+....++..+......- .............-++|+||+..    .+
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~-~~~~~~~~~~~~~dlLiiDdlg~~~~~~~  181 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQG-RYKTTLQRGVMAPRLLIIDEIGYLPFSQE  181 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCC-cHHHHHHHHhcCCCEEEEcccccCCCChH
Confidence            46779999999999999999776433      332233333322111111 11112222123556999999952    22


Q ss_pred             HHHHHhcCCCC-CCCCcEEEEEeCch
Q 037205          208 QLESLMGSLDW-LTPVSRIILTTRNK  232 (439)
Q Consensus       208 ~~~~l~~~~~~-~~~gs~IiiTTR~~  232 (439)
                      ..+.|...+.. ...++ +|+||...
T Consensus       182 ~~~~lf~li~~r~~~~s-~iiTsn~~  206 (259)
T PRK09183        182 EANLFFQVIAKRYEKGS-MILTSNLP  206 (259)
T ss_pred             HHHHHHHHHHHHHhcCc-EEEecCCC
Confidence            22223332211 12344 78888743

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.57  E-value=3.6e-05  Score=68.63  Aligned_cols=65  Identities=25%  Similarity=0.349  Sum_probs=43.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCC
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVT  204 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~  204 (439)
                      .-+.++|.+|+|||.||..+.+....      |+...+++..+.....+. ....+.+.+. +.=||||||+.
T Consensus        48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~-~~~~~~~~l~-~~dlLilDDlG  118 (178)
T PF01695_consen   48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDG-SYEELLKRLK-RVDLLILDDLG  118 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCT-THCHHHHHHH-TSSCEEEETCT
T ss_pred             eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccccccc-chhhhcCccc-cccEecccccc
Confidence            45889999999999999999887665      545556666665443222 2333344444 34678899994

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.56  E-value=0.00094  Score=66.49  Aligned_cols=123  Identities=19%  Similarity=0.264  Sum_probs=77.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----HHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCC
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR--------YL----LATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDV  203 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv  203 (439)
                      ....+.|||..|.|||.|++++.+....        ++    ....+...+..     +..+..++..  .-=++++||+
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~-----~~~~~Fk~~y--~~dlllIDDi  184 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD-----NEMEKFKEKY--SLDLLLIDDI  184 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh-----hhHHHHHHhh--ccCeeeechH
Confidence            4678999999999999999999998765        22    12222233222     1334455555  3447888999


Q ss_pred             CCH----HHHHHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcC
Q 037205          204 TCF----SQLESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYEMEALEYHHALELFSRHAFKR  265 (439)
Q Consensus       204 ~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~  265 (439)
                      +-.    ..-+.+...+.. ...|..||+|++..         .+...+...-++.+.+++.+....++.+.+...
T Consensus       185 q~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~  260 (408)
T COG0593         185 QFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR  260 (408)
T ss_pred             hHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence            431    112222222221 13455899999632         334444556789999999999999999876443

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=97.53  E-value=0.014  Score=58.13  Aligned_cols=105  Identities=8%  Similarity=0.011  Sum_probs=70.3

Q ss_pred             CCceEEecCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEeCchHHHHhc------CCCeEEEcCCCCHHHHHH
Q 037205          194 MKVLIFFYDVTCF-----------SQLESLMGSLDWLTPVSRIILTTRNKQVLRNW------GVSKIYEMEALEYHHALE  256 (439)
Q Consensus       194 ~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~------~~~~~~~l~~L~~~ea~~  256 (439)
                      ++-++|+||+...           .+|.+.+..    .+-.+||++|-+......+      .+...+.|...+.+.|.+
T Consensus       148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~  223 (431)
T PF10443_consen  148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ  223 (431)
T ss_pred             cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence            3679999999321           124333322    3446888888766544332      345678899999999999


Q ss_pred             HHHHhhhcCCCC------------------CcchHHHHHHHHHHhCCCcHHHHHHHHhhcC-CCH
Q 037205          257 LFSRHAFKRNHP------------------DVGYEKLSSNVMKYVQGVPLALKVLGCFLYK-REK  302 (439)
Q Consensus       257 Lf~~~a~~~~~~------------------~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~-~~~  302 (439)
                      +...+.-.....                  ......-....+...||=-.-|..+++.++. .++
T Consensus       224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p  288 (431)
T PF10443_consen  224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP  288 (431)
T ss_pred             HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence            998877432110                  0124455778888899999999999999975 443

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.0013  Score=67.94  Aligned_cols=169  Identities=18%  Similarity=0.280  Sum_probs=93.6

Q ss_pred             CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      +++=|.++...+|.+...-           +.+..+-|.+||+||+|||++|+.+++.... |+  -..++++...++..
T Consensus       434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSE  513 (693)
T KOG0730|consen  434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESE  513 (693)
T ss_pred             hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchH
Confidence            3444566666666643321           2356788999999999999999999998765 43  11222222222110


Q ss_pred             CCCcHHHHHH-HhccCCceEEecCCCCHH-------------HHHHHhcCCCCCCCCcEEEE---EeCchHHHHh-c---
Q 037205          180 AIPGIDLNFR-RLSRMKVLIFFYDVTCFS-------------QLESLMGSLDWLTPVSRIIL---TTRNKQVLRN-W---  238 (439)
Q Consensus       180 ~~~~~~~l~~-~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs~Iii---TTR~~~v~~~-~---  238 (439)
                        ..+..+.+ .=..-+.+|.||.++...             .+..|+..++.......|+|   |.|...+-.. +   
T Consensus       514 --r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPG  591 (693)
T KOG0730|consen  514 --RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPG  591 (693)
T ss_pred             --HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCc
Confidence              01111111 112356888999885321             24555555554433333433   4453333222 1   


Q ss_pred             CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          239 GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       239 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                      ..+..+.++..+.+--.++|..++-+-.....   -...++++.+.|.-
T Consensus       592 RlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S  637 (693)
T KOG0730|consen  592 RLDRIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS  637 (693)
T ss_pred             ccceeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence            35678888888888889999988843332221   12445555555553

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.46  E-value=0.0028  Score=70.17  Aligned_cols=119  Identities=18%  Similarity=0.224  Sum_probs=69.6

Q ss_pred             CCCcccccchHHHHHhhhccC------CC-CeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------HHHHHHHHH
Q 037205          113 KSQLVGVESRVEEIESLLSVE------SK-DVYALGIWGIGGIGKTTIARATFDKISR----YL-------LATKLISNL  174 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------~~~~ll~~l  174 (439)
                      ...++|.+..++.+...+...      .+ ...++.++|++|+|||++|+.+......    |+       ........+
T Consensus       564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l  643 (852)
T TIGR03346       564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARL  643 (852)
T ss_pred             hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHh
Confidence            356899999999999887531      11 2457889999999999999999876532    22       111122333


Q ss_pred             hcCCCCC---CcHHHHHHHhccCC-ceEEecCCCCH--HHHHHHhcCCCCC-----------CCCcEEEEEeCc
Q 037205          175 LKDENAI---PGIDLNFRRLSRMK-VLIFFYDVTCF--SQLESLMGSLDWL-----------TPVSRIILTTRN  231 (439)
Q Consensus       175 ~~~~~~~---~~~~~l~~~l~~~~-~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~IiiTTR~  231 (439)
                      .+..+..   .....+...++.++ .+|+||+++..  +.+..|+..+...           ..++-||+||.-
T Consensus       644 ~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~  717 (852)
T TIGR03346       644 IGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL  717 (852)
T ss_pred             cCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence            3332211   11223444444444 48899999643  3445444433211           123457788774

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.45  E-value=0.00064  Score=66.44  Aligned_cols=148  Identities=22%  Similarity=0.204  Sum_probs=78.0

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC-CCC-cHHHHHHH--hccCCceEEecCCCCH-
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN-AIP-GIDLNFRR--LSRMKVLIFFYDVTCF-  206 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~-~~~-~~~~l~~~--l~~~~~LlVlDdv~~~-  206 (439)
                      ...+.++|||++|+|||.+|+.+++.... |+  ...++.+...++.. .+. ......+.  -++++++|++|+++.. 
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~  225 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGA  225 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence            45789999999999999999999998765 32  11222222211111 000 01111111  1457899999998521 


Q ss_pred             -----------HHH--HHHhcCCC--------------CCCCCcEEEEEeCchHHHHhc-----CCCeEEEcCCCCHHHH
Q 037205          207 -----------SQL--ESLMGSLD--------------WLTPVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHA  254 (439)
Q Consensus       207 -----------~~~--~~l~~~~~--------------~~~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea  254 (439)
                                 .+.  ..|+....              ...++-.||+||..+..+...     ..+..|  ...+.++-
T Consensus       226 g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R  303 (413)
T PLN00020        226 GRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDR  303 (413)
T ss_pred             CCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHH
Confidence                       111  23332111              123456778888766543221     122333  34566666


Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH
Q 037205          255 LELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL  288 (439)
Q Consensus       255 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL  288 (439)
                      .+++..+. +....+   .....++++...|=|+
T Consensus       304 ~eIL~~~~-r~~~l~---~~dv~~Lv~~f~gq~~  333 (413)
T PLN00020        304 IGVVHGIF-RDDGVS---REDVVKLVDTFPGQPL  333 (413)
T ss_pred             HHHHHHHh-ccCCCC---HHHHHHHHHcCCCCCc
Confidence            66666554 333322   2445566666666654

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.43  E-value=0.00029  Score=70.97  Aligned_cols=112  Identities=21%  Similarity=0.238  Sum_probs=71.4

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhHH-HHHHHHHHHHhcCCCC---CCcHHHHHHHh---ccCCceEEecCCCCHHHHHH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISRY-LLATKLISNLLKDENA---IPGIDLNFRRL---SRMKVLIFFYDVTCFSQLES  211 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~f-~~~~~ll~~l~~~~~~---~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~  211 (439)
                      ++.|+|+-++||||+++.+....... +       .+...+..   ....+.++...   ..++.+|+||.|.....|+.
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~~~~i-------y~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~  111 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLEEII-------YINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPDWER  111 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCCcceE-------EEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchhHHH
Confidence            99999999999999996655544220 0       00000000   00111122111   12668999999999998887


Q ss_pred             HhcCCCCCCCCcEEEEEeCchHHHHh------cCCCeEEEcCCCCHHHHHHHH
Q 037205          212 LMGSLDWLTPVSRIILTTRNKQVLRN------WGVSKIYEMEALEYHHALELF  258 (439)
Q Consensus       212 l~~~~~~~~~gs~IiiTTR~~~v~~~------~~~~~~~~l~~L~~~ea~~Lf  258 (439)
                      ....+...++. +|++|+-+......      .|....+++-||+..|-..+-
T Consensus       112 ~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~  163 (398)
T COG1373         112 ALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK  163 (398)
T ss_pred             HHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence            77766655555 88888876655332      245678899999999987643

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=97.40  E-value=0.0066  Score=59.14  Aligned_cols=173  Identities=16%  Similarity=0.144  Sum_probs=102.4

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---------------------HHHH-----
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---------------------YLLA-----  167 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------------------f~~~-----  167 (439)
                      .+++|-+...+.+.+.+..+. -.....++|+.|+||+++|..+++.+-.                     |+-.     
T Consensus         4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~   82 (314)
T PRK07399          4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ   82 (314)
T ss_pred             HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence            468999999999999887321 2478899999999999999988766421                     0000     


Q ss_pred             HHH-----HHHHhcCCC---CCC--cHHHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-
Q 037205          168 TKL-----ISNLLKDEN---AIP--GIDLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-  229 (439)
Q Consensus       168 ~~l-----l~~l~~~~~---~~~--~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-  229 (439)
                      ...     .........   .+.  .++.+.+.+.     +.+-++|+|+++..  ....+|+..+.... .+.+|++| 
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~  161 (314)
T PRK07399         83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP  161 (314)
T ss_pred             ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence            000     000000000   111  2233433333     45668888998644  34555555554333 34555544 


Q ss_pred             CchHHHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205          230 RNKQVLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       230 R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~  293 (439)
                      ....+.... .....+++.+++.++..+.+.......     ........++..++|.|.....+
T Consensus       162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~~l~~~a~Gs~~~al~~  221 (314)
T PRK07399        162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFPELLALAQGSPGAAIAN  221 (314)
T ss_pred             ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-----cchhHHHHHHHHcCCCHHHHHHH
Confidence            444444433 345788999999999999988764211     11112467899999999765543

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.38  E-value=0.0019  Score=71.35  Aligned_cols=103  Identities=15%  Similarity=0.206  Sum_probs=61.8

Q ss_pred             CCCcccccchHHHHHhhhccC------CC-CeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------HHHHHHHHH
Q 037205          113 KSQLVGVESRVEEIESLLSVE------SK-DVYALGIWGIGGIGKTTIARATFDKISR----YL-------LATKLISNL  174 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------~~~~ll~~l  174 (439)
                      ...++|.+..++.+...+...      .+ ...++.++|++|+|||+||+.+++....    |+       ........+
T Consensus       567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~L  646 (857)
T PRK10865        567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRL  646 (857)
T ss_pred             CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHH
Confidence            356899999999888877531      11 2357889999999999999999876532    22       112223334


Q ss_pred             hcCCCCCC---cHHHHHHHhccC-CceEEecCCC--CHHHHHHHhcC
Q 037205          175 LKDENAIP---GIDLNFRRLSRM-KVLIFFYDVT--CFSQLESLMGS  215 (439)
Q Consensus       175 ~~~~~~~~---~~~~l~~~l~~~-~~LlVlDdv~--~~~~~~~l~~~  215 (439)
                      .+..+...   ....+...++.+ .-+|+||+++  +.+.+..|+..
T Consensus       647 iG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~i  693 (857)
T PRK10865        647 VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQV  693 (857)
T ss_pred             hCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHH
Confidence            43332211   112334444333 3689999996  34445555443

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.00087  Score=68.63  Aligned_cols=150  Identities=16%  Similarity=0.178  Sum_probs=89.3

Q ss_pred             CCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205          112 NKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE  178 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~  178 (439)
                      ...++=|.+..+.++.+++..          +-...+-|.++|++|+|||.||+++++.+.. |+  ...++++.+.+..
T Consensus       188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGES  267 (802)
T KOG0733|consen  188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGES  267 (802)
T ss_pred             chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCccc
Confidence            346778899999999887643          1134678899999999999999999999877 54  3444555444332


Q ss_pred             CCCCcHHHHHHHhccCCceEEecCCCCH-----------H--HHHHHhcCCCC------CCCCcEEE-EEeCchHHHHhc
Q 037205          179 NAIPGIDLNFRRLSRMKVLIFFYDVTCF-----------S--QLESLMGSLDW------LTPVSRII-LTTRNKQVLRNW  238 (439)
Q Consensus       179 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~--~~~~l~~~~~~------~~~gs~Ii-iTTR~~~v~~~~  238 (439)
                      . ....+...+.-..-++++++|+++-.           +  -..+|+.....      .+.+--|| .|+|-..+-..+
T Consensus       268 E-kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaL  346 (802)
T KOG0733|consen  268 E-KKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPAL  346 (802)
T ss_pred             H-HHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHH
Confidence            1 00222233334567899999999521           0  13344433322      12232333 255644332222


Q ss_pred             ----CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          239 ----GVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       239 ----~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                          ..+..+.+.-.++..=.+++...+
T Consensus       347 RRaGRFdrEI~l~vP~e~aR~~IL~~~~  374 (802)
T KOG0733|consen  347 RRAGRFDREICLGVPSETAREEILRIIC  374 (802)
T ss_pred             hccccccceeeecCCchHHHHHHHHHHH
Confidence                245667777667666666665554

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.0015  Score=69.39  Aligned_cols=174  Identities=16%  Similarity=0.201  Sum_probs=106.3

Q ss_pred             CCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205          112 NKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE  178 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~  178 (439)
                      .-.++.|-|+..++|++....          +..-++=+.|+|+||.|||-||++++-.... |+  ...++..-..+..
T Consensus       309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~  388 (774)
T KOG0731|consen  309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG  388 (774)
T ss_pred             ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc
Confidence            346788988877777765432          1122677899999999999999999988765 33  2222222222211


Q ss_pred             CCCCcH-HHHHHHhccCCceEEecCCCC-----------------HHHHHHHhcCCCCCCCCcEEE--EEeCchHHHHh-
Q 037205          179 NAIPGI-DLNFRRLSRMKVLIFFYDVTC-----------------FSQLESLMGSLDWLTPVSRII--LTTRNKQVLRN-  237 (439)
Q Consensus       179 ~~~~~~-~~l~~~l~~~~~LlVlDdv~~-----------------~~~~~~l~~~~~~~~~gs~Ii--iTTR~~~v~~~-  237 (439)
                        ...+ +.....-.+.++++.+|+++.                 ...+.+|+...+.+..++.||  -+|....++.. 
T Consensus       389 --asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~a  466 (774)
T KOG0731|consen  389 --ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPA  466 (774)
T ss_pred             --hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHH
Confidence              0011 112222234677888887742                 123667776666565554333  35554444332 


Q ss_pred             ----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          238 ----WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       238 ----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                          -..+..+.++..+...-.++|.-++-..... .+..++++ ++...-|++=|
T Consensus       467 llrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga  520 (774)
T KOG0731|consen  467 LLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA  520 (774)
T ss_pred             hcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence                2355678888889999999999888444332 34456666 88888888766

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0012  Score=70.42  Aligned_cols=117  Identities=17%  Similarity=0.216  Sum_probs=79.5

Q ss_pred             CCcccccchHHHHHhhhcc-------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-------HH----HHHHHHHHHh
Q 037205          114 SQLVGVESRVEEIESLLSV-------ESKDVYALGIWGIGGIGKTTIARATFDKISR-------YL----LATKLISNLL  175 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~----~~~~ll~~l~  175 (439)
                      ..++|-+..+..+.+.+..       .+....+....|+.|||||-||++++..+..       |-    .-..-.+.+.
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLI  570 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLI  570 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHh
Confidence            5689999999888887643       2233678888999999999999999887753       11    4455566676


Q ss_pred             cCCCC---CCcHHHHHHHhccCCc-eEEecCCC--CHHHHHHHhcCCCCC----C-------CCcEEEEEeC
Q 037205          176 KDENA---IPGIDLNFRRLSRMKV-LIFFYDVT--CFSQLESLMGSLDWL----T-------PVSRIILTTR  230 (439)
Q Consensus       176 ~~~~~---~~~~~~l~~~l~~~~~-LlVlDdv~--~~~~~~~l~~~~~~~----~-------~gs~IiiTTR  230 (439)
                      +..+.   .+.-..+.+..+.++| ++.||++.  +.+-++-|+..+..+    +       .++-||.||.
T Consensus       571 GaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN  642 (786)
T COG0542         571 GAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN  642 (786)
T ss_pred             CCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence            66663   2344556777788887 77789996  445556565554432    1       2355677775

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.31  E-value=0.00019  Score=59.33  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=21.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +|+|.|++|+||||+|+.+.+.+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Confidence            589999999999999999988753

...

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.29  E-value=0.0018  Score=59.83  Aligned_cols=166  Identities=20%  Similarity=0.211  Sum_probs=99.3

Q ss_pred             CCCcccccchHHH---HHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCCC
Q 037205          113 KSQLVGVESRVEE---IESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAIP  182 (439)
Q Consensus       113 ~~~~vGr~~~~~~---l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~~  182 (439)
                      .++.||.+.....   |.+.|..    +....+-|..+|++|.|||-+|+++++.... |+  -..+++..-.+.     
T Consensus       120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd-----  194 (368)
T COG1223         120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD-----  194 (368)
T ss_pred             HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh-----
Confidence            3668898765543   4455542    2345789999999999999999999999876 33  222222222111     


Q ss_pred             cHHHHH----HHhccCCceEEecCCCCH--------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHhc---C
Q 037205          183 GIDLNF----RRLSRMKVLIFFYDVTCF--------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRNW---G  239 (439)
Q Consensus       183 ~~~~l~----~~l~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~---~  239 (439)
                      +...++    +.-+.-++.+.+|.++-.              +...+|+..+...  +.|-.-|..|.++..+...   .
T Consensus       195 gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsR  274 (368)
T COG1223         195 GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSR  274 (368)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhh
Confidence            122222    222346899999988531              2245666555433  3455556666655554332   2


Q ss_pred             CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC
Q 037205          240 VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV  286 (439)
Q Consensus       240 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl  286 (439)
                      ....++....+.+|-.+++..++-.-..+.   ..-.+.++.+++|+
T Consensus       275 FEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~  318 (368)
T COG1223         275 FEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGM  318 (368)
T ss_pred             hhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCC
Confidence            345677777789999999998883322222   12255667777665

>TIGR00763 lon ATP-dependent protease La

Probab=97.27  E-value=0.0014  Score=71.78  Aligned_cols=148  Identities=16%  Similarity=0.201  Sum_probs=80.0

Q ss_pred             CCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH-H-HH--HHHHHHhcCCCC----
Q 037205          114 SQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL-L-AT--KLISNLLKDENA----  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~-~-~~--~ll~~l~~~~~~----  180 (439)
                      ...+|.+...+.|.+++..    .....+++.++|++|+|||++|+.+++.+.. |+ + ..  .-...+.+....    
T Consensus       320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~  399 (775)
T TIGR00763       320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGA  399 (775)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCC
Confidence            4578888888888876532    2223457999999999999999999988754 22 0 00  001122211110    


Q ss_pred             CC--cHHHHHHHhccCCceEEecCCCCHHH------HHHHhcCCCC-----C----------CCCcEEEEEeCchHHHH-
Q 037205          181 IP--GIDLNFRRLSRMKVLIFFYDVTCFSQ------LESLMGSLDW-----L----------TPVSRIILTTRNKQVLR-  236 (439)
Q Consensus       181 ~~--~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~-----~----------~~gs~IiiTTR~~~v~~-  236 (439)
                      ..  ..+.+... ...+-+++||+++....      ...|+..+..     +          ..+.-+|.||....... 
T Consensus       400 ~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~  478 (775)
T TIGR00763       400 MPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPR  478 (775)
T ss_pred             CCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCH
Confidence            01  12222222 23445788999964421      1222222210     0          01233344554332111 


Q ss_pred             -hcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          237 -NWGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       237 -~~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                       .......+++++++.++-.+++.++.
T Consensus       479 ~L~~R~~vi~~~~~~~~e~~~I~~~~l  505 (775)
T TIGR00763       479 PLLDRMEVIELSGYTEEEKLEIAKKYL  505 (775)
T ss_pred             HHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence             11234678999999998888886654

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.25  E-value=0.0053  Score=66.99  Aligned_cols=149  Identities=17%  Similarity=0.243  Sum_probs=83.0

Q ss_pred             CCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH-HH-H--HHHHHHhcCCC----C
Q 037205          114 SQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL-LA-T--KLISNLLKDEN----A  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~-~~-~--~ll~~l~~~~~----~  180 (439)
                      .+.+|.+...+.|.++|..    ......++.++|++|+||||+|+.++..... |+ +. .  .-...+.+...    .
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~  401 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGS  401 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCC
Confidence            5689999999999887763    2234568999999999999999999876543 21 00 0  00011111111    1


Q ss_pred             CC--cHHHHHHHhccCCceEEecCCCCHHH------HHHHhcCCCC--------------CC-CCcEEEEEeCchHHHHh
Q 037205          181 IP--GIDLNFRRLSRMKVLIFFYDVTCFSQ------LESLMGSLDW--------------LT-PVSRIILTTRNKQVLRN  237 (439)
Q Consensus       181 ~~--~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~--------------~~-~gs~IiiTTR~~~v~~~  237 (439)
                      ..  ..+.+.. ....+-+++||.++....      ...|+..+..              +. .+.-+|.||....+...
T Consensus       402 ~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~a  480 (784)
T PRK10787        402 MPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAP  480 (784)
T ss_pred             CCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHH
Confidence            11  1122222 222455788999954321      2344433321              01 22333445543322111


Q ss_pred             -cCCCeEEEcCCCCHHHHHHHHHHhhh
Q 037205          238 -WGVSKIYEMEALEYHHALELFSRHAF  263 (439)
Q Consensus       238 -~~~~~~~~l~~L~~~ea~~Lf~~~a~  263 (439)
                       .+...++++.+++.+|-.++..++..
T Consensus       481 Ll~R~~ii~~~~~t~eek~~Ia~~~L~  507 (784)
T PRK10787        481 LLDRMEVIRLSGYTEDEKLNIAKRHLL  507 (784)
T ss_pred             HhcceeeeecCCCCHHHHHHHHHHhhh
Confidence             12346789999999999888877663

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.0028  Score=67.84  Aligned_cols=144  Identities=15%  Similarity=0.111  Sum_probs=82.0

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH-----HHHHHHHHHhcCCC--CC
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL-----LATKLISNLLKDEN--AI  181 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~-----~~~~ll~~l~~~~~--~~  181 (439)
                      +..+||+.+++.+.+.|.....+-+  .++|.+|+|||+++.-++.++..     ++     +.-.+..-+.+...  ++
T Consensus       170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF  247 (786)
T COG0542         170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF  247 (786)
T ss_pred             CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH
Confidence            5689999999999999975322222  36899999999999998888754     22     00111111111111  11


Q ss_pred             C--cHHHHHHHhccCCceEEecCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEeCchHH------HHhcCCCe
Q 037205          182 P--GIDLNFRRLSRMKVLIFFYDVTCF-----------SQLESLMGSLDWLTPVSRIILTTRNKQV------LRNWGVSK  242 (439)
Q Consensus       182 ~--~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v------~~~~~~~~  242 (439)
                      .  ....+.+.-+..++.|++|.+...           +.-.-|.+.+. .+.--.|-.||-++.-      +......+
T Consensus       248 EeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ  326 (786)
T COG0542         248 EERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATTLDEYRKYIEKDAALERRFQ  326 (786)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEeccHHHHHHHhhhchHHHhcCc
Confidence            1  122222223345899999998421           12222223322 1222234467765532      11113457


Q ss_pred             EEEcCCCCHHHHHHHHHH
Q 037205          243 IYEMEALEYHHALELFSR  260 (439)
Q Consensus       243 ~~~l~~L~~~ea~~Lf~~  260 (439)
                      ++.|.+.+.+++...+.-
T Consensus       327 ~V~V~EPs~e~ti~ILrG  344 (786)
T COG0542         327 KVLVDEPSVEDTIAILRG  344 (786)
T ss_pred             eeeCCCCCHHHHHHHHHH
Confidence            889999999999988853

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=97.24  E-value=0.011  Score=57.46  Aligned_cols=163  Identities=14%  Similarity=0.130  Sum_probs=93.2

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-------HHHHHHHHHHHh----------cCCCC----C
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-------YLLATKLISNLL----------KDENA----I  181 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~~~~~ll~~l~----------~~~~~----~  181 (439)
                      .+.+...+..+ .-...+.++|+.|+||+++|..+++.+--       ..-..+++..-.          .....    .
T Consensus        13 ~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~   91 (319)
T PRK08769         13 YDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRT   91 (319)
T ss_pred             HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccc
Confidence            44455554421 12446889999999999999988765421       000000000000          00000    0


Q ss_pred             C-cHHHHHHHh---c-----cCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCC
Q 037205          182 P-GIDLNFRRL---S-----RMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEA  248 (439)
Q Consensus       182 ~-~~~~l~~~l---~-----~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~  248 (439)
                      . .++.+++..   .     ++.-++|+|+++...  ...+|+..+..-.+++.+|++|.+. .++... .....+.+.+
T Consensus        92 ~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~  171 (319)
T PRK08769         92 EIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKL  171 (319)
T ss_pred             cccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCC
Confidence            1 244444332   2     355688899997543  4556665555445677777776643 444333 2346788999


Q ss_pred             CCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHH
Q 037205          249 LEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLG  294 (439)
Q Consensus       249 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g  294 (439)
                      ++.+++.+.+....     .+   ...+..++..++|.|+....+.
T Consensus       172 ~~~~~~~~~L~~~~-----~~---~~~a~~~~~l~~G~p~~A~~~~  209 (319)
T PRK08769        172 PPAHEALAWLLAQG-----VS---ERAAQEALDAARGHPGLAAQWL  209 (319)
T ss_pred             cCHHHHHHHHHHcC-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence            99999988776431     11   2336678999999998665443

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=97.24  E-value=0.0011  Score=70.86  Aligned_cols=150  Identities=15%  Similarity=0.178  Sum_probs=81.9

Q ss_pred             CCcccccchHHHHHhhhccC----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCC
Q 037205          114 SQLVGVESRVEEIESLLSVE----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENA  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~  180 (439)
                      .++.|.+...+++.+.+...          ..-.+-|.|+|++|+|||++|+.++..... |+  ....+.....+... 
T Consensus       152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~-  230 (644)
T PRK10733        152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGA-  230 (644)
T ss_pred             HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccH-
Confidence            34566666555555543210          011345899999999999999999887654 22  11111111111000 


Q ss_pred             CCcHHHHHHHhccCCceEEecCCCCHH----------------HHHHHhcCCCCCC--CCcEEEEEeCchHHHHhc----
Q 037205          181 IPGIDLNFRRLSRMKVLIFFYDVTCFS----------------QLESLMGSLDWLT--PVSRIILTTRNKQVLRNW----  238 (439)
Q Consensus       181 ~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~~----  238 (439)
                      ......+.......+.+|++|+++...                .+..++..+..+.  .+.-+|.||..+..+...    
T Consensus       231 ~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~Rp  310 (644)
T PRK10733        231 SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRP  310 (644)
T ss_pred             HHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCC
Confidence            001122233334567899999986531                1334433333222  234455577766543321    


Q ss_pred             -CCCeEEEcCCCCHHHHHHHHHHhhhc
Q 037205          239 -GVSKIYEMEALEYHHALELFSRHAFK  264 (439)
Q Consensus       239 -~~~~~~~l~~L~~~ea~~Lf~~~a~~  264 (439)
                       ..+..+.++..+.++-.+++..+...
T Consensus       311 gRfdr~i~v~~Pd~~~R~~Il~~~~~~  337 (644)
T PRK10733        311 GRFDRQVVVGLPDVRGREQILKVHMRR  337 (644)
T ss_pred             cccceEEEcCCCCHHHHHHHHHHHhhc
Confidence             24567889989988888888777633

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.0054  Score=56.42  Aligned_cols=148  Identities=17%  Similarity=0.300  Sum_probs=85.3

Q ss_pred             CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      .++=|.|-..+++.+....           +-+..+-|.++|++|.|||-||+++++.... |+  .-.++...-+++.+
T Consensus       155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegp  234 (408)
T KOG0727|consen  155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGP  234 (408)
T ss_pred             cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCc
Confidence            4456788888888775432           2356788999999999999999999998766 54  44444444444433


Q ss_pred             CCCcHHHHHHHhccCCceEEecCCCCHHH----------------HHHHhcCCCCCC--CCcEEEEEe-Cch----HHHH
Q 037205          180 AIPGIDLNFRRLSRMKVLIFFYDVTCFSQ----------------LESLMGSLDWLT--PVSRIILTT-RNK----QVLR  236 (439)
Q Consensus       180 ~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~~~--~gs~IiiTT-R~~----~v~~  236 (439)
                      .. ..+..+-.-.+-+-.|.+|.++....                +-.|+.....|.  .+-++|..| |..    .++.
T Consensus       235 rm-vrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallr  313 (408)
T KOG0727|consen  235 RM-VRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLR  313 (408)
T ss_pred             HH-HHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcC
Confidence            11 11111222235678888898853211                233444444333  345666544 432    2222


Q ss_pred             hcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          237 NWGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       237 ~~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                      .-..+..++.+..+..+-.-.|....
T Consensus       314 pgrldrkiefplpdrrqkrlvf~tit  339 (408)
T KOG0727|consen  314 PGRLDRKIEFPLPDRRQKRLVFSTIT  339 (408)
T ss_pred             CccccccccCCCCchhhhhhhHHhhh
Confidence            22345567777555555555565444

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=97.22  E-value=0.0027  Score=65.21  Aligned_cols=171  Identities=18%  Similarity=0.152  Sum_probs=105.6

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-------HHHHHHHHHHHhcCCC----CCC
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-------YLLATKLISNLLKDEN----AIP  182 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~~~~~ll~~l~~~~~----~~~  182 (439)
                      .++||-+...+.|...+..+. -...-...|+-|+||||+|+.++..+--       ....-.....+.....    .++
T Consensus        16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiD   94 (515)
T COG2812          16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEID   94 (515)
T ss_pred             HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhh
Confidence            678999999999999887432 1345567999999999999988755421       1111111122222211    111


Q ss_pred             -----cHHHHHHHhc--------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHh-cCCCeEEE
Q 037205          183 -----GIDLNFRRLS--------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIYE  245 (439)
Q Consensus       183 -----~~~~l~~~l~--------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~  245 (439)
                           +++.+++...        ++.=+.|+|+|...  ..+.+|+..+..-.+.-..|+.|.+++ +... ......|.
T Consensus        95 aASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~  174 (515)
T COG2812          95 AASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFD  174 (515)
T ss_pred             hhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhcccccc
Confidence                 4455544433        34458889999754  458888877765445556566555443 3222 23457889


Q ss_pred             cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                      +..++.++-...+...+-......  .++....|++..+|-.
T Consensus       175 fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs~  214 (515)
T COG2812         175 FKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGSL  214 (515)
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCCh
Confidence            999999998888887774444332  2455666677776643

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.001  Score=63.17  Aligned_cols=69  Identities=17%  Similarity=0.220  Sum_probs=44.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-----HH-------HHHHHHHHHhcCCCCCC--cHHHHHHHhccCCc--eEEe
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-----YL-------LATKLISNLLKDENAIP--GIDLNFRRLSRMKV--LIFF  200 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~-------~~~~ll~~l~~~~~~~~--~~~~l~~~l~~~~~--LlVl  200 (439)
                      -|+|.++|+||.|||+|++++++++..     |.       ....+.+....+....-  ..+.+.+.+.++..  ++.+
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI  256 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI  256 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            489999999999999999999998765     11       33344444443333111  34555666666554  4446


Q ss_pred             cCCCC
Q 037205          201 YDVTC  205 (439)
Q Consensus       201 Ddv~~  205 (439)
                      |.|.+
T Consensus       257 DEVES  261 (423)
T KOG0744|consen  257 DEVES  261 (423)
T ss_pred             HHHHH
Confidence            99854

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.20  E-value=0.0004  Score=65.53  Aligned_cols=68  Identities=24%  Similarity=0.239  Sum_probs=44.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCC
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVT  204 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~  204 (439)
                      ...-+.++|.+|+|||.||.++.+.+..      |+...+++..+......-.....+.+.++ +-=||||||+.
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~-~~dlLIiDDlG  177 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK-KVDLLIIDDIG  177 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh-cCCEEEEeccc
Confidence            4567889999999999999999998876      44444555555443332112233333333 33478899994

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.18  E-value=0.0017  Score=71.59  Aligned_cols=118  Identities=17%  Similarity=0.179  Sum_probs=68.3

Q ss_pred             CCCcccccchHHHHHhhhcc-------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------HHHHHHHHH
Q 037205          113 KSQLVGVESRVEEIESLLSV-------ESKDVYALGIWGIGGIGKTTIARATFDKISR----YL-------LATKLISNL  174 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------~~~~ll~~l  174 (439)
                      ...++|.+..++.+.+.+..       ......++.++|++|+|||.||+.++..+..    |+       ....-...+
T Consensus       565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l  644 (852)
T TIGR03345       565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRL  644 (852)
T ss_pred             cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccc
Confidence            36789999999999887642       1223457899999999999999988777632    11       111122223


Q ss_pred             hcCCCCC---CcHHHHHHHhc-cCCceEEecCCCCH--HHHHHHhcCCCCCC-----------CCcEEEEEeC
Q 037205          175 LKDENAI---PGIDLNFRRLS-RMKVLIFFYDVTCF--SQLESLMGSLDWLT-----------PVSRIILTTR  230 (439)
Q Consensus       175 ~~~~~~~---~~~~~l~~~l~-~~~~LlVlDdv~~~--~~~~~l~~~~~~~~-----------~gs~IiiTTR  230 (439)
                      .+..+..   .....+.+.++ ...-+|+||+++..  +.++.|+..+....           ..+-||+||.
T Consensus       645 ~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN  717 (852)
T TIGR03345       645 KGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN  717 (852)
T ss_pred             cCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence            3332211   11122334444 34569999999643  33444444333211           3456777776

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.16  E-value=0.00044  Score=67.70  Aligned_cols=50  Identities=16%  Similarity=0.256  Sum_probs=42.2

Q ss_pred             CCcccccchHHHHHhhhccC----CCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          114 SQLVGVESRVEEIESLLSVE----SKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .+++|.++.++++.+++...    +...++++|+|++|+||||||..+.+.+..
T Consensus        51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            37999999999999988642    234688999999999999999999888754

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0037  Score=64.21  Aligned_cols=125  Identities=18%  Similarity=0.284  Sum_probs=74.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCCCcHHHHH-HHhccCCceEEecCCCCH------
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAIPGIDLNF-RRLSRMKVLIFFYDVTCF------  206 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~------  206 (439)
                      ..-|.+||++|+|||-||++++|.... |+  ---+++....++..  ..+..+. +.=..-+++|.||.++..      
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESE--rAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~  622 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESE--RAVRQVFQRARASAPCVIFFDEIDALVPRRSD  622 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHH--HHHHHHHHHhhcCCCeEEEecchhhcCcccCC
Confidence            456889999999999999999999775 44  11112211111100  0122222 222357899999999531      


Q ss_pred             -------HHHHHHhcCCCCC--CCCcEEEEEeCchHH-----HHhcCCCeEEEcCCCCHHHHHHHHHHhhh
Q 037205          207 -------SQLESLMGSLDWL--TPVSRIILTTRNKQV-----LRNWGVSKIYEMEALEYHHALELFSRHAF  263 (439)
Q Consensus       207 -------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~  263 (439)
                             ..+.+|+..+...  -.|--||-.|.-+.+     +..-..+...-|+..+.+|-.+++....-
T Consensus       623 ~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk  693 (802)
T KOG0733|consen  623 EGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK  693 (802)
T ss_pred             CCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence                   2255666555433  234445544443333     22223556777888899999999888774

>PRK10536 hypothetical protein; Provisional

Probab=97.11  E-value=0.003  Score=59.08  Aligned_cols=45  Identities=18%  Similarity=0.130  Sum_probs=35.9

Q ss_pred             CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +...+.++......+...+..    ..++.+.|.+|.|||+||.++..+
T Consensus        53 ~~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         53 DTSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             CCccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHH
Confidence            345577888888888887762    348999999999999999987764

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.11  E-value=0.0012  Score=71.58  Aligned_cols=101  Identities=14%  Similarity=0.208  Sum_probs=62.1

Q ss_pred             CCcccccchHHHHHhhhccC-------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH-------HHHHHHHHHhcCC
Q 037205          114 SQLVGVESRVEEIESLLSVE-------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL-------LATKLISNLLKDE  178 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~-------~~~~ll~~l~~~~  178 (439)
                      ..++|-+..++.|.+.+...       ......+.++|++|+|||+||+.++..+.. |+       ........+.+..
T Consensus       458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~  537 (758)
T PRK11034        458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP  537 (758)
T ss_pred             ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCC
Confidence            56899999999888877521       112457889999999999999999887643 22       1111234444433


Q ss_pred             CC---CCcHHHHHHHhccC-CceEEecCCCCHH--HHHHHhc
Q 037205          179 NA---IPGIDLNFRRLSRM-KVLIFFYDVTCFS--QLESLMG  214 (439)
Q Consensus       179 ~~---~~~~~~l~~~l~~~-~~LlVlDdv~~~~--~~~~l~~  214 (439)
                      ..   ......+.+.++.+ .-+++||+++...  .++.|+.
T Consensus       538 ~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq  579 (758)
T PRK11034        538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQ  579 (758)
T ss_pred             CCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHH
Confidence            21   11222344444444 4689999997543  3444443

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.11  E-value=0.00055  Score=66.96  Aligned_cols=92  Identities=21%  Similarity=0.184  Sum_probs=50.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCC--CCCCcHHHHHHHhccCCceEEecCCCC----
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDE--NAIPGIDLNFRRLSRMKVLIFFYDVTC----  205 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~--~~~~~~~~l~~~l~~~~~LlVlDdv~~----  205 (439)
                      ..+.++|.+|+|||.||.++++.+..      |+....++..+....  ....... ..+.+. .-=||||||+..    
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~-~~~~l~-~~DLLIIDDlG~e~~t  261 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEE-VYDLLI-NCDLLIIDDLGTEKIT  261 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHH-HHHHhc-cCCEEEEeccCCCCCC
Confidence            66899999999999999999998755      333333444332211  0111111 122333 335899999932    


Q ss_pred             HHHHHHHhcCCCC-CCCCcEEEEEeCc
Q 037205          206 FSQLESLMGSLDW-LTPVSRIILTTRN  231 (439)
Q Consensus       206 ~~~~~~l~~~~~~-~~~gs~IiiTTR~  231 (439)
                      ......|...+.. ...+-.+||||..
T Consensus       262 ~~~~~~Lf~iin~R~~~~k~tIiTSNl  288 (329)
T PRK06835        262 EFSKSELFNLINKRLLRQKKMIISTNL  288 (329)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence            2222333332221 1234568888874

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=97.08  E-value=0.00055  Score=67.59  Aligned_cols=27  Identities=19%  Similarity=0.017  Sum_probs=23.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      -...+|+|++|+||||||+.+|+....
T Consensus       169 GQR~lIvgppGvGKTTLaK~Ian~I~~  195 (416)
T PRK09376        169 GQRGLIVAPPKAGKTVLLQNIANSITT  195 (416)
T ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHh
Confidence            346789999999999999999998764

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=97.07  E-value=0.018  Score=53.34  Aligned_cols=162  Identities=18%  Similarity=0.192  Sum_probs=91.4

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhHHhH------HH---------HHHHHHHHHhcCCC-CCC-cHHHHHHH-----h
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDKISR------YL---------LATKLISNLLKDEN-AIP-GIDLNFRR-----L  191 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~---------~~~~ll~~l~~~~~-~~~-~~~~l~~~-----l  191 (439)
                      .++-+++.++|.-|.|||++++.+......      .+         +...+...+..... ... ....+.+.     -
T Consensus        48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~  127 (269)
T COG3267          48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK  127 (269)
T ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence            455679999999999999999955443322      11         44444445544222 222 22222222     2


Q ss_pred             ccCC-ceEEecCCCCH--HHHHHHh---cCCCCCCCCcEEEEEeCc---h----HHHHhc-CCCeE-EEcCCCCHHHHHH
Q 037205          192 SRMK-VLIFFYDVTCF--SQLESLM---GSLDWLTPVSRIILTTRN---K----QVLRNW-GVSKI-YEMEALEYHHALE  256 (439)
Q Consensus       192 ~~~~-~LlVlDdv~~~--~~~~~l~---~~~~~~~~gs~IiiTTR~---~----~v~~~~-~~~~~-~~l~~L~~~ea~~  256 (439)
                      ++++ +.++.|+....  +.++.+.   ..-..+..--+|+..-..   +    .+.... ..... |+++|++.++...
T Consensus       128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~  207 (269)
T COG3267         128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGL  207 (269)
T ss_pred             hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHH
Confidence            3555 89999998532  2333332   222222222233332221   1    111111 12234 8999999999988


Q ss_pred             HHHHhhhcCCCCCcc-hHHHHHHHHHHhCCCcHHHHHHHH
Q 037205          257 LFSRHAFKRNHPDVG-YEKLSSNVMKYVQGVPLALKVLGC  295 (439)
Q Consensus       257 Lf~~~a~~~~~~~~~-~~~~~~~i~~~~~GlPLal~~~g~  295 (439)
                      ++..+..+...+.+- ..+....+.....|.|.++..++.
T Consensus       208 yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~  247 (269)
T COG3267         208 YLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT  247 (269)
T ss_pred             HHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence            888776444333322 356778889999999999987765

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.04  E-value=0.0021  Score=70.98  Aligned_cols=118  Identities=14%  Similarity=0.191  Sum_probs=69.4

Q ss_pred             CCcccccchHHHHHhhhcc------CCC-CeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------HHHHHHHHHh
Q 037205          114 SQLVGVESRVEEIESLLSV------ESK-DVYALGIWGIGGIGKTTIARATFDKISR----YL-------LATKLISNLL  175 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~------~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------~~~~ll~~l~  175 (439)
                      ..++|-+..++.+...+..      ..+ ....+.++|++|+|||+||+.+++.+..    ++       ....-...+.
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~  588 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI  588 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence            6689999999999887642      111 2346778999999999999999877531    11       0011122222


Q ss_pred             cCCC---CCCcHHHHHHHhccCC-ceEEecCCCC--HHHHHHHhcCCCCC-----------CCCcEEEEEeCc
Q 037205          176 KDEN---AIPGIDLNFRRLSRMK-VLIFFYDVTC--FSQLESLMGSLDWL-----------TPVSRIILTTRN  231 (439)
Q Consensus       176 ~~~~---~~~~~~~l~~~l~~~~-~LlVlDdv~~--~~~~~~l~~~~~~~-----------~~gs~IiiTTR~  231 (439)
                      +..+   .......+.+.++.++ -+++||+++.  .+.++.|+..+..+           ...+.+|+||..
T Consensus       589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~  661 (821)
T CHL00095        589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL  661 (821)
T ss_pred             CCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence            2222   1112234556666665 4888999964  33455555444321           134566777763

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.04  E-value=0.0065  Score=57.69  Aligned_cols=24  Identities=33%  Similarity=0.399  Sum_probs=20.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|.|.|.+|+|||+||+.+++...
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~lg   46 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKRD   46 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC
Confidence            466899999999999999987543

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK08939 primosomal protein DnaI; Reviewed

Probab=97.03  E-value=0.00075  Score=65.44  Aligned_cols=111  Identities=14%  Similarity=0.207  Sum_probs=58.4

Q ss_pred             cccchHHHHHhhhccC--CCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHH
Q 037205          118 GVESRVEEIESLLSVE--SKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFR  189 (439)
Q Consensus       118 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~  189 (439)
                      ++...+.....++..-  .....-+.|+|..|+|||.||.++++.+..      |+-...++..+.....+- ......+
T Consensus       135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~-~~~~~l~  213 (306)
T PRK08939        135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDG-SVKEKID  213 (306)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcC-cHHHHHH
Confidence            4444444444444421  113457889999999999999999999865      332223333332211111 1222223


Q ss_pred             HhccCCceEEecCCCC--HHHHH--HHhcCC-C-CCCCCcEEEEEeC
Q 037205          190 RLSRMKVLIFFYDVTC--FSQLE--SLMGSL-D-WLTPVSRIILTTR  230 (439)
Q Consensus       190 ~l~~~~~LlVlDdv~~--~~~~~--~l~~~~-~-~~~~gs~IiiTTR  230 (439)
                      .+. +.=||||||+..  ...|.  .++..+ . ....+-.+|+||.
T Consensus       214 ~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN  259 (306)
T PRK08939        214 AVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN  259 (306)
T ss_pred             Hhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence            333 456899999942  22332  233322 1 1123456788886

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=97.02  E-value=0.032  Score=54.36  Aligned_cols=158  Identities=13%  Similarity=0.140  Sum_probs=91.7

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---------HH-HHHHHHHHHhc-------CC--CCCCcH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---------YL-LATKLISNLLK-------DE--NAIPGI  184 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~-~~~~ll~~l~~-------~~--~~~~~~  184 (439)
                      +.+.+.+..+ .-...+.++|+.|+||+++|..++..+--         .- ....+......       ..  ..+ .+
T Consensus        13 ~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I-~v   90 (319)
T PRK06090         13 QNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSI-TV   90 (319)
T ss_pred             HHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcC-CH
Confidence            4444444321 12457889999999999999988765420         00 00000000000       00  011 23


Q ss_pred             HHHHH---Hhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCCCCHH
Q 037205          185 DLNFR---RLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYH  252 (439)
Q Consensus       185 ~~l~~---~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~  252 (439)
                      +.+++   .+.     +..-++|+|+++..  ....+|+..+..-.+++.+|++|.++ .++... .....+.+.+++.+
T Consensus        91 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~  170 (319)
T PRK06090         91 EQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTA  170 (319)
T ss_pred             HHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHH
Confidence            33333   332     34557888999754  34666666665555677777666654 444443 34568899999999


Q ss_pred             HHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205          253 HALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       253 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~  293 (439)
                      ++.+.+....    . .     ....++..++|.|+....+
T Consensus       171 ~~~~~L~~~~----~-~-----~~~~~l~l~~G~p~~A~~~  201 (319)
T PRK06090        171 QAMQWLKGQG----I-T-----VPAYALKLNMGSPLKTLAM  201 (319)
T ss_pred             HHHHHHHHcC----C-c-----hHHHHHHHcCCCHHHHHHH
Confidence            9998876531    1 1     1356789999999976554

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=97.01  E-value=0.012  Score=57.71  Aligned_cols=145  Identities=16%  Similarity=0.086  Sum_probs=83.9

Q ss_pred             Cccc-ccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--H-----HHHHHHHHHHh-cCCCCC----
Q 037205          115 QLVG-VESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--Y-----LLATKLISNLL-KDENAI----  181 (439)
Q Consensus       115 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f-----~~~~~ll~~l~-~~~~~~----  181 (439)
                      .++| -+..++.+...+..+ .-.....++|+.|+||||+|+.+.+.+--  .     .-.-.....+. +..++.    
T Consensus         6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~   84 (329)
T PRK08058          6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA   84 (329)
T ss_pred             HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence            4566 556667777776522 22456789999999999999988766420  0     00000000000 001011    


Q ss_pred             -----CcHHHH---HHHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEE
Q 037205          182 -----PGIDLN---FRRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIY  244 (439)
Q Consensus       182 -----~~~~~l---~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~  244 (439)
                           -.++.+   .+.+     .+.+-++|+|+++..  +...+|+..+....+++.+|++|.++. +.... .....+
T Consensus        85 ~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i  164 (329)
T PRK08058         85 PDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVV  164 (329)
T ss_pred             cccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceee
Confidence                 022333   3222     234557888998644  345666666665556777887776543 33322 345788


Q ss_pred             EcCCCCHHHHHHHHHH
Q 037205          245 EMEALEYHHALELFSR  260 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~  260 (439)
                      ++.+++.++..+.+..
T Consensus       165 ~~~~~~~~~~~~~L~~  180 (329)
T PRK08058        165 EFRPLPPESLIQRLQE  180 (329)
T ss_pred             eCCCCCHHHHHHHHHH
Confidence            9999999999887764

>PRK06696 uridine kinase; Validated

Probab=97.00  E-value=0.00083  Score=62.19  Aligned_cols=44  Identities=23%  Similarity=0.265  Sum_probs=33.3

Q ss_pred             ccchHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          119 VESRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       119 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      |.+.+++|.+.+.. ......+|+|.|.+|+||||||+.+.+.+.
T Consensus         3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696          3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45556666666543 345678999999999999999999887653

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.97  E-value=0.00061  Score=63.99  Aligned_cols=27  Identities=22%  Similarity=0.095  Sum_probs=23.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      -..++|.|++|+|||||++.+++....
T Consensus        16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            457889999999999999999987653

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0044  Score=62.59  Aligned_cols=121  Identities=19%  Similarity=0.192  Sum_probs=71.9

Q ss_pred             CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH---HHHHHHHHHhcCCCCCC---cHHHH----HHHhccCCceEEec
Q 037205          133 ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL---LATKLISNLLKDENAIP---GIDLN----FRRLSRMKVLIFFY  201 (439)
Q Consensus       133 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~---~~~~ll~~l~~~~~~~~---~~~~l----~~~l~~~~~LlVlD  201 (439)
                      +......+.+.|++|+|||+||..++..-.- |+   ..+.+.        ..+   ....+    ...-+..--.||+|
T Consensus       534 ~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~mi--------G~sEsaKc~~i~k~F~DAYkS~lsiivvD  605 (744)
T KOG0741|consen  534 ERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMI--------GLSESAKCAHIKKIFEDAYKSPLSIIVVD  605 (744)
T ss_pred             ccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHcc--------CccHHHHHHHHHHHHHHhhcCcceEEEEc
Confidence            3445778889999999999999988765321 33   000000        011   11222    22334455789999


Q ss_pred             CCCCHHH------------HHHHhcCCCCCC-CCcE--EEEEeCchHHHHhcC----CCeEEEcCCCCH-HHHHHHHHHh
Q 037205          202 DVTCFSQ------------LESLMGSLDWLT-PVSR--IILTTRNKQVLRNWG----VSKIYEMEALEY-HHALELFSRH  261 (439)
Q Consensus       202 dv~~~~~------------~~~l~~~~~~~~-~gs~--IiiTTR~~~v~~~~~----~~~~~~l~~L~~-~ea~~Lf~~~  261 (439)
                      |+...-+            +++|.-.+.... .|-|  |+-||-...++..|+    ....|.|+.++. ++..+.++..
T Consensus       606 diErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~  685 (744)
T KOG0741|consen  606 DIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL  685 (744)
T ss_pred             chhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence            9954333            344433322211 2334  455788888888876    346789999987 6777777654

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=96.94  E-value=0.034  Score=54.30  Aligned_cols=158  Identities=15%  Similarity=0.151  Sum_probs=92.1

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---H--------HHHHHHHHHH-------hcCCC-CCCcH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---Y--------LLATKLISNL-------LKDEN-AIPGI  184 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f--------~~~~~ll~~l-------~~~~~-~~~~~  184 (439)
                      +.+.+.+..+ .-.....++|+.|+||+++|+.++..+--   -        -..+.+....       ..... .+ .+
T Consensus        12 ~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I-~i   89 (325)
T PRK06871         12 QQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDI-GV   89 (325)
T ss_pred             HHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCC-CH
Confidence            4455544422 12457789999999999999998765420   0        0000000000       00000 11 33


Q ss_pred             HHHH---HHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCCCCHH
Q 037205          185 DLNF---RRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYH  252 (439)
Q Consensus       185 ~~l~---~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~  252 (439)
                      +.++   +.+.     ++.-++|+|+++..  ....+|+..+..-.+++.+|++|.++ .++... .....+.+.+++.+
T Consensus        90 d~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~  169 (325)
T PRK06871         90 DQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQ  169 (325)
T ss_pred             HHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHH
Confidence            4443   3332     45567889999754  34566666665555677777777655 444442 23568899999999


Q ss_pred             HHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          253 HALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       253 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      ++.+.+.... .    .+  ...+..++..++|.|+..
T Consensus       170 ~~~~~L~~~~-~----~~--~~~~~~~~~l~~g~p~~A  200 (325)
T PRK06871        170 QALDWLQAQS-S----AE--ISEILTALRINYGRPLLA  200 (325)
T ss_pred             HHHHHHHHHh-c----cC--hHHHHHHHHHcCCCHHHH
Confidence            9998887653 1    11  223567788999999633

>PRK08118 topology modulation protein; Reviewed

Probab=96.93  E-value=0.0007  Score=59.70  Aligned_cols=25  Identities=36%  Similarity=0.525  Sum_probs=22.2

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|.|+|++|+||||||+.+++.+..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~   27 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNI   27 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5889999999999999999988653

>PRK07667 uridine kinase; Provisional

Probab=96.93  E-value=0.0013  Score=59.41  Aligned_cols=40  Identities=23%  Similarity=0.406  Sum_probs=31.2

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++.|...+........+|+|.|.+|.||||+|..+...+.
T Consensus         3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~   42 (193)
T PRK07667          3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK   42 (193)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4556666655455668999999999999999998877653

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.0035  Score=65.44  Aligned_cols=149  Identities=19%  Similarity=0.268  Sum_probs=84.0

Q ss_pred             CCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHH--HHHHhcCCC----C
Q 037205          114 SQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKL--ISNLLKDEN----A  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~l--l~~l~~~~~----~  180 (439)
                      .+-.|+++-.+.|.+.+.-    ++.+-.+++.+|+||||||++|+.++..+.. |+  ....+  ...|.+...    .
T Consensus       411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGA  490 (906)
T KOG2004|consen  411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGA  490 (906)
T ss_pred             ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeecc
Confidence            5568999999999988743    4556789999999999999999999877654 32  00000  001111111    1


Q ss_pred             CC--cHHHHHHHhccCCceEEecCCCCHH------HHHHHhcCCC---C--C--------CCCcEEEE-EeCch-H--HH
Q 037205          181 IP--GIDLNFRRLSRMKVLIFFYDVTCFS------QLESLMGSLD---W--L--------TPVSRIIL-TTRNK-Q--VL  235 (439)
Q Consensus       181 ~~--~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~~~---~--~--------~~gs~Iii-TTR~~-~--v~  235 (439)
                      .+  .++.++ ..+..+-|+.||.|+..-      --.+|+..+.   +  |        -.=|+|++ .|-|. .  ..
T Consensus       491 MPGkiIq~LK-~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~  569 (906)
T KOG2004|consen  491 MPGKIIQCLK-KVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP  569 (906)
T ss_pred             CChHHHHHHH-hhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCCh
Confidence            11  122222 234467788889996421      1122222221   0  0        11267764 33322 0  01


Q ss_pred             HhcCCCeEEEcCCCCHHHHHHHHHHhhh
Q 037205          236 RNWGVSKIYEMEALEYHHALELFSRHAF  263 (439)
Q Consensus       236 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~  263 (439)
                      .......++++.+-..+|-..+-.++..
T Consensus       570 pLlDRMEvIelsGYv~eEKv~IA~~yLi  597 (906)
T KOG2004|consen  570 PLLDRMEVIELSGYVAEEKVKIAERYLI  597 (906)
T ss_pred             hhhhhhheeeccCccHHHHHHHHHHhhh
Confidence            1123447899999999988877766653

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.90  E-value=0.00084  Score=57.57  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=23.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      --|+|.||||+||||+++.+.+.++.
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~   31 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLRE   31 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence            45899999999999999999998876

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.90  E-value=0.022  Score=53.29  Aligned_cols=185  Identities=15%  Similarity=0.174  Sum_probs=109.1

Q ss_pred             CcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------HH-----------------
Q 037205          115 QLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------------YL-----------------  165 (439)
Q Consensus       115 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~-----------------  165 (439)
                      .+.++++.-..+.++..  ..+.+-..+||++|.||-|.+..+.+.+..            |.                 
T Consensus        14 ~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH   91 (351)
T KOG2035|consen   14 ELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH   91 (351)
T ss_pred             hcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence            46677777777776655  456788899999999999999888777643            21                 


Q ss_pred             --------------HHHHHHHHHhcCCC-CCCcHHHHHHHhccCCc-eEEecCCCCHH--HHHHHhcCCCCCCCCcEEEE
Q 037205          166 --------------LATKLISNLLKDEN-AIPGIDLNFRRLSRMKV-LIFFYDVTCFS--QLESLMGSLDWLTPVSRIIL  227 (439)
Q Consensus       166 --------------~~~~ll~~l~~~~~-~~~~~~~l~~~l~~~~~-LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Iii  227 (439)
                                    +.++++.++.+... +.         -..+.| ++|+-.+++..  .-.+|........+.+|+|+
T Consensus        92 lEitPSDaG~~DRvViQellKevAQt~qie~---------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl  162 (351)
T KOG2035|consen   92 LEITPSDAGNYDRVVIQELLKEVAQTQQIET---------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLIL  162 (351)
T ss_pred             EEeChhhcCcccHHHHHHHHHHHHhhcchhh---------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEE
Confidence                          33333333332221 10         011233 45555555432  22233333333456778876


Q ss_pred             EeCch--HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHHHhh-cC----
Q 037205          228 TTRNK--QVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLGCFL-YK----  299 (439)
Q Consensus       228 TTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~~L-~~----  299 (439)
                      ...+.  -+.+.-...-.++++..+++|....+++.+-+.....+  ++++.+|+++++|+-- ||-++-..- ..    
T Consensus       163 ~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~  240 (351)
T KOG2035|consen  163 VCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFT  240 (351)
T ss_pred             EecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccccc
Confidence            43321  11111123356789999999999999988866554443  7899999999998743 333222111 11    


Q ss_pred             -----CCHHHHHHHHHHH
Q 037205          300 -----REKEVWESAINKL  312 (439)
Q Consensus       300 -----~~~~~w~~~l~~l  312 (439)
                           -...+|+-++.+.
T Consensus       241 a~~~~i~~~dWe~~i~e~  258 (351)
T KOG2035|consen  241 ANSQVIPKPDWEIYIQEI  258 (351)
T ss_pred             ccCCCCCCccHHHHHHHH
Confidence                 1356798888774

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=96.87  E-value=0.00037  Score=59.33  Aligned_cols=101  Identities=20%  Similarity=0.220  Sum_probs=57.3

Q ss_pred             ccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhcCCC--CCC----cHHHHHHH
Q 037205          117 VGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDEN--AIP----GIDLNFRR  190 (439)
Q Consensus       117 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~~~~--~~~----~~~~l~~~  190 (439)
                      ||....++++.+.+..-......|.|+|.+|+||+++|+.++..-..            ....  ..+    ..+.+.. 
T Consensus         1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~------------~~~~~~~~~~~~~~~~~l~~-   67 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR------------ANGPFIVIDCASLPAELLEQ-   67 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT------------CCS-CCCCCHHCTCHHHHHH-
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc------------cCCCeEEechhhCcHHHHHH-
Confidence            57777788888777643334456789999999999999988766431            0000  111    1121111 


Q ss_pred             hccCCceEEecCCCCHH--HHHHHhcCCCC-CCCCcEEEEEeCch
Q 037205          191 LSRMKVLIFFYDVTCFS--QLESLMGSLDW-LTPVSRIILTTRNK  232 (439)
Q Consensus       191 l~~~~~LlVlDdv~~~~--~~~~l~~~~~~-~~~gs~IiiTTR~~  232 (439)
                        .+.--|+|+|++...  ....|...+.. .....|+|.||...
T Consensus        68 --a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~  110 (138)
T PF14532_consen   68 --AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD  110 (138)
T ss_dssp             --CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred             --cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence              256678889997543  22233222211 14567999999844

>TIGR01817 nifA Nif-specific regulatory protein

Probab=96.87  E-value=0.008  Score=63.21  Aligned_cols=52  Identities=17%  Similarity=0.251  Sum_probs=41.2

Q ss_pred             CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .....++|.+..++++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus       193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~  244 (534)
T TIGR01817       193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP  244 (534)
T ss_pred             CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence            3456899999999999988764333344577999999999999999987643

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.0026  Score=64.25  Aligned_cols=140  Identities=19%  Similarity=0.238  Sum_probs=78.4

Q ss_pred             CCcccccch---HHHHHhhhccC-------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCC
Q 037205          114 SQLVGVESR---VEEIESLLSVE-------SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIP  182 (439)
Q Consensus       114 ~~~vGr~~~---~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~  182 (439)
                      .+.-|-|+.   +++|.+.|...       ..=.+-|.++|+||.|||-||++++-.... |+.         ....+++
T Consensus       304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~---------~sGSEFd  374 (752)
T KOG0734|consen  304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY---------ASGSEFD  374 (752)
T ss_pred             ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEe---------ccccchh
Confidence            456677764   45555556431       112567899999999999999999987765 220         0000111


Q ss_pred             ------cHHHHHHHh----ccCCceEEecCCCCH-------------HHHHHHhcCCCCCCCCcEEEE--EeCchHHHHh
Q 037205          183 ------GIDLNFRRL----SRMKVLIFFYDVTCF-------------SQLESLMGSLDWLTPVSRIIL--TTRNKQVLRN  237 (439)
Q Consensus       183 ------~~~~l~~~l----~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~~  237 (439)
                            +...++...    ..-++.|.+|.++..             ..+.+|+..+..|.++.-|||  .|.-+..+..
T Consensus       375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~  454 (752)
T KOG0734|consen  375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK  454 (752)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence                  333333333    346899999998532             226677766666655443433  3433333222


Q ss_pred             c-----CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          238 W-----GVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       238 ~-----~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                      .     ..+..+.|+..+..--.++|..+.
T Consensus       455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl  484 (752)
T KOG0734|consen  455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYL  484 (752)
T ss_pred             HhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence            1     234455666655554455555544

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=96.85  E-value=0.025  Score=55.62  Aligned_cols=90  Identities=14%  Similarity=0.230  Sum_probs=58.4

Q ss_pred             CCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 037205          194 MKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPD  269 (439)
Q Consensus       194 ~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~  269 (439)
                      +.-++|+|+++.  .....+|+..+..-.+++.+|++|.+ ..++... .....+.+.+++.++..+.+....    . .
T Consensus       132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~-~  206 (342)
T PRK06964        132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V-A  206 (342)
T ss_pred             CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-C
Confidence            455788899964  34566777666655677766665554 4444442 234688999999999998887641    1 1


Q ss_pred             cchHHHHHHHHHHhCCCcHHHHHH
Q 037205          270 VGYEKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       270 ~~~~~~~~~i~~~~~GlPLal~~~  293 (439)
                      +     ...++..++|.|+....+
T Consensus       207 ~-----~~~~l~~~~Gsp~~Al~~  225 (342)
T PRK06964        207 D-----ADALLAEAGGAPLAALAL  225 (342)
T ss_pred             h-----HHHHHHHcCCCHHHHHHH
Confidence            1     223577889999754433

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.025  Score=52.35  Aligned_cols=179  Identities=19%  Similarity=0.313  Sum_probs=95.5

Q ss_pred             CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      +++=|.+..++++.+.+-.           +-....-+..||++|.|||-+|++.+.+... |+  ...++.+-..+.  
T Consensus       171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGd--  248 (424)
T KOG0652|consen  171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD--  248 (424)
T ss_pred             cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcc--
Confidence            4566777888877775422           1123567889999999999999998877655 55  111222211111  


Q ss_pred             CCCcHHHHHHHh----ccCCceEEecCCCCH-------------H---HHHHHhcCCCCCCCC--cEEEEEeC-----ch
Q 037205          180 AIPGIDLNFRRL----SRMKVLIFFYDVTCF-------------S---QLESLMGSLDWLTPV--SRIILTTR-----NK  232 (439)
Q Consensus       180 ~~~~~~~l~~~l----~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~~~~g--s~IiiTTR-----~~  232 (439)
                         +...++..+    ...+..|.+|.++-.             +   ..-.|+..+..|.+.  -+||..|.     ++
T Consensus       249 ---GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDP  325 (424)
T KOG0652|consen  249 ---GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDP  325 (424)
T ss_pred             ---hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCH
Confidence               223333322    245778888887321             1   123444555555444  46665554     33


Q ss_pred             HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhc-CCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhh
Q 037205          233 QVLRNWGVSKIYEMEALEYHHALELFSRHAFK-RNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL  297 (439)
Q Consensus       233 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~-~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L  297 (439)
                      .++.+-..+..++.+..+++.-..++.-+.-+ ...+.-+++++++.--..-|.--.|+.+=|+++
T Consensus       326 ALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMi  391 (424)
T KOG0652|consen  326 ALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMI  391 (424)
T ss_pred             HHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHH
Confidence            44444445567777766665555555545432 224455667665443332222233444444433

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.0037  Score=65.10  Aligned_cols=170  Identities=16%  Similarity=0.239  Sum_probs=92.6

Q ss_pred             CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      ..+.|.+...+.+.+....           +-...+.+.++|++|.|||.||+++++.... |+  ....+++...+...
T Consensus       242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGese  321 (494)
T COG0464         242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESE  321 (494)
T ss_pred             ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHH
Confidence            4455666555555543321           1134568999999999999999999996544 32  00122221111100


Q ss_pred             CCCcHHHHHHHhccCCceEEecCCCCH-------------HHHHHHhcCCCCCCC--CcEEEEEeCchHHHHhc-----C
Q 037205          180 AIPGIDLNFRRLSRMKVLIFFYDVTCF-------------SQLESLMGSLDWLTP--VSRIILTTRNKQVLRNW-----G  239 (439)
Q Consensus       180 ~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~--gs~IiiTTR~~~v~~~~-----~  239 (439)
                       ....+......+..++.|.+|+++..             .....++..+.....  +..+|-||-.+......     .
T Consensus       322 -k~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gR  400 (494)
T COG0464         322 -KNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGR  400 (494)
T ss_pred             -HHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCc
Confidence             00122233334568899999999431             223444444432223  33345555544433321     3


Q ss_pred             CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCC
Q 037205          240 VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQG  285 (439)
Q Consensus       240 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G  285 (439)
                      .+..+.++..+.++..+.|..+.-....+ -...-....+++.+.|
T Consensus       401 fd~~i~v~~pd~~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~  445 (494)
T COG0464         401 FDRLIYVPLPDLEERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG  445 (494)
T ss_pred             cceEeecCCCCHHHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence            46788899999999999999887432222 0112224445555555

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=96.82  E-value=0.0096  Score=58.46  Aligned_cols=47  Identities=23%  Similarity=0.126  Sum_probs=35.4

Q ss_pred             cccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          116 LVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       116 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +||....++++.+.+..-...-.-|.|+|.+|+||+++|+.+.+.-.
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~   47 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK   47 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence            47888778887777654333345578999999999999999876543

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.80  E-value=0.0014  Score=55.68  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +|.++|++|+||||+|+.+.....
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC
Confidence            578999999999999999986654

...

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=96.79  E-value=0.042  Score=54.01  Aligned_cols=160  Identities=14%  Similarity=0.151  Sum_probs=92.1

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH------HHHHHHHH-------HhcCC--CCCC
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL------LATKLISN-------LLKDE--NAIP  182 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------~~~~ll~~-------l~~~~--~~~~  182 (439)
                      -+.+.+.+..+ .-...+.++|+.|+||+++|..++..+--     -.      ..+.+...       +....  ..+.
T Consensus        11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~   89 (334)
T PRK07993         11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG   89 (334)
T ss_pred             HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC
Confidence            34455555422 22457889999999999999987765410     00      00000000       00000  0111


Q ss_pred             --cHHHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCCCCH
Q 037205          183 --GIDLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEY  251 (439)
Q Consensus       183 --~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~  251 (439)
                        .+..+.+.+.     +++-++|+|+++..  ....+|+..+..-.+++.+|++|.+. .++... .....+.+.+++.
T Consensus        90 idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~  169 (334)
T PRK07993         90 VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPE  169 (334)
T ss_pred             HHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCH
Confidence              2233333332     45668888998744  34566666665545677777777654 455442 2345788999999


Q ss_pred             HHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          252 HHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       252 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      +++.+.+....   . .+   .+.+..++..++|.|...
T Consensus       170 ~~~~~~L~~~~---~-~~---~~~a~~~~~la~G~~~~A  201 (334)
T PRK07993        170 QYALTWLSREV---T-MS---QDALLAALRLSAGAPGAA  201 (334)
T ss_pred             HHHHHHHHHcc---C-CC---HHHHHHHHHHcCCCHHHH
Confidence            99988775432   1 11   334678899999999643

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.78  E-value=0.017  Score=58.85  Aligned_cols=43  Identities=19%  Similarity=0.277  Sum_probs=33.7

Q ss_pred             chHHHHHhhhc-----cCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          121 SRVEEIESLLS-----VESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       121 ~~~~~l~~~L~-----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +.+.++..||.     ...-+.+++.|+|++|+||||..+.++..+..
T Consensus        89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~  136 (634)
T KOG1970|consen   89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGY  136 (634)
T ss_pred             HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence            35677777876     34456789999999999999999988776543

>PRK06921 hypothetical protein; Provisional

Probab=96.78  E-value=0.001  Score=63.17  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=22.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+.++|.+|+|||+||.++++.+.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~  142 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELM  142 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence            46788999999999999999988764

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.78  E-value=0.0011  Score=55.13  Aligned_cols=22  Identities=50%  Similarity=0.794  Sum_probs=20.5

Q ss_pred             EEEecCCCChhHHHHHHHHhHH
Q 037205          140 LGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      |+|.|++|+||||+|+++.+..
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999885

...

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=96.76  E-value=0.017  Score=56.77  Aligned_cols=48  Identities=23%  Similarity=0.124  Sum_probs=38.3

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|.+..++++.+.+..-...-.-|.|+|.+|+||+++|+.+...-
T Consensus         6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s   53 (326)
T PRK11608          6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS   53 (326)
T ss_pred             CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence            569999999999988876533334467899999999999999987543

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.74  E-value=0.0039  Score=57.02  Aligned_cols=117  Identities=19%  Similarity=0.290  Sum_probs=67.6

Q ss_pred             CCCCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhcCCCCCCcHHHHH
Q 037205          111 DNKSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNF  188 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~~~~~~~~~~~l~  188 (439)
                      ..-..++|.|...+.+.+--..  ..-...-|.+||--|.|||+|++++.+.+..     +-++-+.-...++...-.+.
T Consensus        57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~-----~glrLVEV~k~dl~~Lp~l~  131 (287)
T COG2607          57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD-----EGLRLVEVDKEDLATLPDLV  131 (287)
T ss_pred             cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh-----cCCeEEEEcHHHHhhHHHHH
Confidence            4556799999888887763321  2233456889999999999999999988754     00010000001222334445


Q ss_pred             HHhc--cCCceEEecCCC---CHHHHHHHhcCCCC---CCCCcEEEEEeCch
Q 037205          189 RRLS--RMKVLIFFYDVT---CFSQLESLMGSLDW---LTPVSRIILTTRNK  232 (439)
Q Consensus       189 ~~l~--~~~~LlVlDdv~---~~~~~~~l~~~~~~---~~~gs~IiiTTR~~  232 (439)
                      ..|+  ..++.|..||..   ..+..+.|...+..   ..+...++..|.|+
T Consensus       132 ~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR  183 (287)
T COG2607         132 ELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR  183 (287)
T ss_pred             HHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence            5554  468888899993   23334555444431   22334455555444

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.72  E-value=0.026  Score=53.96  Aligned_cols=179  Identities=15%  Similarity=0.136  Sum_probs=98.5

Q ss_pred             CCccccc---chHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------HH----------HH
Q 037205          114 SQLVGVE---SRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR------------YL----------LA  167 (439)
Q Consensus       114 ~~~vGr~---~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~----------~~  167 (439)
                      +.+||-.   ..++.|..+|.. .....+-+.|+|.+|+|||++++++......            .+          +.
T Consensus        34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y  113 (302)
T PF05621_consen   34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY  113 (302)
T ss_pred             CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence            4466643   345666666654 3445678999999999999999999876543            01          55


Q ss_pred             HHHHHHHhcCCCCCC----cHHHHHHHhcc-CCceEEecCCCCH-----HHHHHHh---cCCCCCCCCcEEEEEeCchHH
Q 037205          168 TKLISNLLKDENAIP----GIDLNFRRLSR-MKVLIFFYDVTCF-----SQLESLM---GSLDWLTPVSRIILTTRNKQV  234 (439)
Q Consensus       168 ~~ll~~l~~~~~~~~----~~~~l~~~l~~-~~~LlVlDdv~~~-----~~~~~l~---~~~~~~~~gs~IiiTTR~~~v  234 (439)
                      ..++..+........    ....+.+.++. +--+||+|++.+.     .+-..++   ..+.+--.-+-|.+-|++-.-
T Consensus       114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~  193 (302)
T PF05621_consen  114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYR  193 (302)
T ss_pred             HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHH
Confidence            666666655443222    23334455554 4568899999653     1111111   222212223455666664322


Q ss_pred             HHhc-----CCCeEEEcCCCCHH-HHHHHHHHhh--hcCCCCC-cchHHHHHHHHHHhCCCcHHHHH
Q 037205          235 LRNW-----GVSKIYEMEALEYH-HALELFSRHA--FKRNHPD-VGYEKLSSNVMKYVQGVPLALKV  292 (439)
Q Consensus       235 ~~~~-----~~~~~~~l~~L~~~-ea~~Lf~~~a--~~~~~~~-~~~~~~~~~i~~~~~GlPLal~~  292 (439)
                      +-..     +...++.++.-..+ +...|+....  +.-..++ -...+++..|...++|+.=-+..
T Consensus       194 al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~  260 (302)
T PF05621_consen  194 ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR  260 (302)
T ss_pred             HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence            2111     12345566655443 3444543322  1111222 23468899999999998655443

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.69  E-value=0.014  Score=52.05  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=21.5

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +|.|+|++|+||||+|+.++..+.
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~   24 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG   24 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999988765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK07261 topology modulation protein; Provisional

Probab=96.68  E-value=0.0013  Score=58.25  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             EEEEecCCCChhHHHHHHHHhHH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .|.|+|++|+||||||+.+....
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            48899999999999999987664

>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.68  E-value=0.04  Score=53.63  Aligned_cols=48  Identities=21%  Similarity=0.095  Sum_probs=34.2

Q ss_pred             EEEcCCCCHHHHHHHHHHhhhcCCCCC-cchHHHHHHHHHHhCCCcHHH
Q 037205          243 IYEMEALEYHHALELFSRHAFKRNHPD-VGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal  290 (439)
                      +++|++++.+|+..++..++-.+-... ...+...+++.-..+|+|--+
T Consensus       258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el  306 (309)
T PF10236_consen  258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL  306 (309)
T ss_pred             eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence            789999999999999988774333222 233455666677779999754

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.02  Score=52.69  Aligned_cols=143  Identities=18%  Similarity=0.374  Sum_probs=83.7

Q ss_pred             Cccc-ccchHHHHHhhhccC-----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          115 QLVG-VESRVEEIESLLSVE-----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       115 ~~vG-r~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      ..|| .|..+++|.+.+...           -....-+.++|++|.|||-||+.+++...- |+  .-.++.+...+.  
T Consensus       147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ige--  224 (404)
T KOG0728|consen  147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE--  224 (404)
T ss_pred             HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhh--
Confidence            3555 577888888765431           134677889999999999999999988654 32  222222222222  


Q ss_pred             CCCcHHHHHHHh----ccCCceEEecCCCCH-------------H-H--HHHHhcCCCCC--CCCcEEEEEeCchHHHH-
Q 037205          180 AIPGIDLNFRRL----SRMKVLIFFYDVTCF-------------S-Q--LESLMGSLDWL--TPVSRIILTTRNKQVLR-  236 (439)
Q Consensus       180 ~~~~~~~l~~~l----~~~~~LlVlDdv~~~-------------~-~--~~~l~~~~~~~--~~gs~IiiTTR~~~v~~-  236 (439)
                         +...+++.+    .+-+-.|..|.+++.             + |  .-.|+..+..|  .++-+||..|.--.++. 
T Consensus       225 ---gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~  301 (404)
T KOG0728|consen  225 ---GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDP  301 (404)
T ss_pred             ---hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccH
Confidence               222222221    245677888887532             1 1  22333444333  35667777665433332 


Q ss_pred             ----hcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          237 ----NWGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       237 ----~~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                          .-..+..++.++.+++.-.+++.-+.
T Consensus       302 allrpgridrkiefp~p~e~ar~~ilkihs  331 (404)
T KOG0728|consen  302 ALLRPGRIDRKIEFPPPNEEARLDILKIHS  331 (404)
T ss_pred             hhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence                22456678888888887777776554

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.63  E-value=0.0021  Score=66.42  Aligned_cols=50  Identities=24%  Similarity=0.305  Sum_probs=41.8

Q ss_pred             CCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          114 SQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .+++|.+..++.|.+.|..    -+..-+++.++|++|+||||||+.+.+-+..
T Consensus        76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~  129 (644)
T PRK15455         76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER  129 (644)
T ss_pred             hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence            4689999999999998832    2345689999999999999999999877655

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=96.61  E-value=0.044  Score=57.49  Aligned_cols=184  Identities=15%  Similarity=0.161  Sum_probs=106.6

Q ss_pred             CCCCcccccchHHHHHhhhcc--CC-CCeeEEEEecCCCChhHHHHHHHHhHHhH---------HH--------------
Q 037205          112 NKSQLVGVESRVEEIESLLSV--ES-KDVYALGIWGIGGIGKTTIARATFDKISR---------YL--------------  165 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~--~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~--------------  165 (439)
                      .+..+-+|+.+..+|...+..  .. ..-+.+=|.|.+|.|||.++..|.+.+..         |.              
T Consensus       394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~  473 (767)
T KOG1514|consen  394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE  473 (767)
T ss_pred             ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence            456788999999999998864  22 23458889999999999999999997764         32              


Q ss_pred             HHHHHHHHHhcCCC-CCCcHHHHHHHhc-----cCCceEEecCCCCHHH--HHHHhcCCCC-CCCCcEEEEEeCc-h---
Q 037205          166 LATKLISNLLKDEN-AIPGIDLNFRRLS-----RMKVLIFFYDVTCFSQ--LESLMGSLDW-LTPVSRIILTTRN-K---  232 (439)
Q Consensus       166 ~~~~ll~~l~~~~~-~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~l~~~~~~-~~~gs~IiiTTR~-~---  232 (439)
                      +...|+..+.+... .....+.+..+..     .+..++++|+++..-.  -+-|-..+.| ..++|+++|-+=. .   
T Consensus       474 ~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl  553 (767)
T KOG1514|consen  474 IYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL  553 (767)
T ss_pred             HHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence            44555555544443 1224555655554     3567888898854321  1222223333 2467877654431 1   


Q ss_pred             -------HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCC-CcchHHHHHHHHHHhCCCcHHHHHHHHh
Q 037205          233 -------QVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHP-DVGYEKLSSNVMKYVQGVPLALKVLGCF  296 (439)
Q Consensus       233 -------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlPLal~~~g~~  296 (439)
                             .+...+| ...+...+-++++-.+.......+...- ....+=++++|+.-.|-.-.|+.+.-+.
T Consensus       554 PEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA  624 (767)
T KOG1514|consen  554 PERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA  624 (767)
T ss_pred             HHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence                   1111122 2345677777777777776554322111 1122334555555555555555554443

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.011  Score=61.93  Aligned_cols=149  Identities=19%  Similarity=0.182  Sum_probs=77.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------HHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCC
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR----YL-------LATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVT  204 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~  204 (439)
                      ...-|.|.|..|+|||+||+++++.+..    |+       +...-+..+..     .....+.+.+...+-++||||++
T Consensus       430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk-----~l~~vfse~~~~~PSiIvLDdld  504 (952)
T KOG0735|consen  430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQK-----FLNNVFSEALWYAPSIIVLDDLD  504 (952)
T ss_pred             ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHH-----HHHHHHHHHHhhCCcEEEEcchh
Confidence            3567899999999999999999988765    11       00000000000     01223345566789999999995


Q ss_pred             CHH--------H-------HHHHh----cCCCCCCCCcE--EEEEeCchHHHHh-----cCCCeEEEcCCCCHHHHHHHH
Q 037205          205 CFS--------Q-------LESLM----GSLDWLTPVSR--IILTTRNKQVLRN-----WGVSKIYEMEALEYHHALELF  258 (439)
Q Consensus       205 ~~~--------~-------~~~l~----~~~~~~~~gs~--IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf  258 (439)
                      ..-        +       +..++    ...  ...+.+  +|.|.....-.+.     .-......++.+...+-.+++
T Consensus       505 ~l~~~s~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL  582 (952)
T KOG0735|consen  505 CLASASSNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEIL  582 (952)
T ss_pred             hhhccCcccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHH
Confidence            211        1       11111    111  123333  4445443322211     123456788888887776666


Q ss_pred             HHhhhcCCCCCcchHHHHHHHHHHhCCC-cHHHHHH
Q 037205          259 SRHAFKRNHPDVGYEKLSSNVMKYVQGV-PLALKVL  293 (439)
Q Consensus       259 ~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~  293 (439)
                      +... ...... ...+...-+..+|+|. |.-+.++
T Consensus       583 ~~~~-s~~~~~-~~~~dLd~ls~~TEGy~~~DL~if  616 (952)
T KOG0735|consen  583 TTIF-SKNLSD-ITMDDLDFLSVKTEGYLATDLVIF  616 (952)
T ss_pred             HHHH-Hhhhhh-hhhHHHHHHHHhcCCccchhHHHH
Confidence            5443 222211 1223333477778765 4444443

>PTZ00494 tuzin-like protein; Provisional

Probab=96.60  E-value=0.2  Score=50.31  Aligned_cols=197  Identities=12%  Similarity=0.072  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHhc-------------cccccccCCcc--hhhHHHHHHHhhhhccccccc---CCCCCCCCcccccchHHH
Q 037205           64 QTWRKGLREAVG-------------LSGFHYRSIRP--ESELINEVVNHILKRLLEEVF---RPRDNKSQLVGVESRVEE  125 (439)
Q Consensus        64 ~~W~~aL~~~~~-------------~~g~~~~~~~~--e~~~i~~iv~~i~~~l~~~~~---~p~~~~~~~vGr~~~~~~  125 (439)
                      ..||.+|++-+.             ..||.+.+...  .+-.+.--++...+.+++...   +.......+|.|+.+-.-
T Consensus       303 Rd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~  382 (664)
T PTZ00494        303 TNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEAL  382 (664)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHHH
Confidence            378888776532             34555544332  233344445555555444321   112456789999999888


Q ss_pred             HHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH-------HHHHHHHHHhcCCCCCC--cHHHH-----
Q 037205          126 IESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR---YL-------LATKLISNLLKDENAIP--GIDLN-----  187 (439)
Q Consensus       126 l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~-------~~~~ll~~l~~~~~~~~--~~~~l-----  187 (439)
                      +.+.|.. +...+|++.+.|.-|.||++|.+....+...   |+       ....+...+.-...+.-  ..+.+     
T Consensus       383 vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKALgV~nve~CGDlLdFI~ea~~  462 (664)
T PTZ00494        383 VRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRALGVSNVEVCGDLLGFVEEAMR  462 (664)
T ss_pred             HHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHHhCCCChhhhccHHHHHHHHHH
Confidence            8888875 3456899999999999999999987766554   44       44445555443332221  22222     


Q ss_pred             --HHHhccCCceEEec--CCCCHHH-HHHHhcCCCCCCCCcEEEEEeCchHHHHhc---CCCeEEEcCCCCHHHHHHHHH
Q 037205          188 --FRRLSRMKVLIFFY--DVTCFSQ-LESLMGSLDWLTPVSRIILTTRNKQVLRNW---GVSKIYEMEALEYHHALELFS  259 (439)
Q Consensus       188 --~~~l~~~~~LlVlD--dv~~~~~-~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~  259 (439)
                        +....++.-+||+-  +=.+... ..+.. .+..-..-|.|++----+.+....   ..-..|-+++++.++|.+.-.
T Consensus       463 ~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~Ytq  541 (664)
T PTZ00494        463 GATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAE  541 (664)
T ss_pred             HHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHh
Confidence              22234566677753  2222221 11111 111112346777654433332111   123578899999999988655


Q ss_pred             Hh
Q 037205          260 RH  261 (439)
Q Consensus       260 ~~  261 (439)
                      +.
T Consensus       542 H~  543 (664)
T PTZ00494        542 HT  543 (664)
T ss_pred             cc
Confidence            43

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=96.59  E-value=0.0071  Score=59.00  Aligned_cols=138  Identities=15%  Similarity=0.100  Sum_probs=77.7

Q ss_pred             CcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH--------HHHHHHHH----H---hc
Q 037205          115 QLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YL--------LATKLISN----L---LK  176 (439)
Q Consensus       115 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~--------~~~~ll~~----l---~~  176 (439)
                      .++|-+.....+..+..........+.++|++|+||||+|..+++.+..   +.        ....+...    +   ..
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~   81 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP   81 (325)
T ss_pred             CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence            3567777777777777643333446999999999999999998887652   00        00000000    0   00


Q ss_pred             CCC-CCC-cHHHHHHHhc--------cCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCe
Q 037205          177 DEN-AIP-GIDLNFRRLS--------RMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSK  242 (439)
Q Consensus       177 ~~~-~~~-~~~~l~~~l~--------~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~  242 (439)
                      ... ..+ ..+.+++...        +..-++++|+++...  ...++..........+++|++|.+. .+.... ....
T Consensus        82 s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~  161 (325)
T COG0470          82 SDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQ  161 (325)
T ss_pred             cccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcce
Confidence            000 111 2333333322        356788899997654  3556665555556788888888743 333322 2345


Q ss_pred             EEEcCCCCHH
Q 037205          243 IYEMEALEYH  252 (439)
Q Consensus       243 ~~~l~~L~~~  252 (439)
                      .+++.+.+..
T Consensus       162 ~i~f~~~~~~  171 (325)
T COG0470         162 RIRFKPPSRL  171 (325)
T ss_pred             eeecCCchHH
Confidence            6667664333

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.57  E-value=0.0096  Score=52.89  Aligned_cols=108  Identities=13%  Similarity=0.163  Sum_probs=59.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH----------------HHHHHHHHHHHhcCC---C----CCC----cHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR----------------YLLATKLISNLLKDE---N----AIP----GIDLNFR  189 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----------------f~~~~~ll~~l~~~~---~----~~~----~~~~l~~  189 (439)
                      -.+++|+|+.|+|||||.+.+......                |+.+.+.+..+.-..   .    ..+    ..-.+.+
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lar  100 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLAS  100 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHH
Confidence            458999999999999999988532111                223333444443211   1    112    1223344


Q ss_pred             HhccC--CceEEecCCC---CHHHHHHHhcCCCC-CCCCcEEEEEeCchHHHHhcCCCeEEEc
Q 037205          190 RLSRM--KVLIFFYDVT---CFSQLESLMGSLDW-LTPVSRIILTTRNKQVLRNWGVSKIYEM  246 (439)
Q Consensus       190 ~l~~~--~~LlVlDdv~---~~~~~~~l~~~~~~-~~~gs~IiiTTR~~~v~~~~~~~~~~~l  246 (439)
                      .+..+  +-+++||+..   +....+.+...+.. ...|..||++|.+......  ++.++.+
T Consensus       101 al~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l  161 (176)
T cd03238         101 ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF  161 (176)
T ss_pred             HHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence            45567  7888999873   22222222222111 1246778899998877643  4556555

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.54  E-value=0.002  Score=58.23  Aligned_cols=24  Identities=38%  Similarity=0.545  Sum_probs=21.7

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +|+|.|.+|+||||+|+.+...+.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            699999999999999999887765

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.52  E-value=0.0058  Score=55.46  Aligned_cols=96  Identities=14%  Similarity=0.162  Sum_probs=58.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH------HHHHH--HHHH----HHhcC-C---CCCCcHHHHHHHhccCCceEEec
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR------YLLAT--KLIS----NLLKD-E---NAIPGIDLNFRRLSRMKVLIFFY  201 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~--~ll~----~l~~~-~---~~~~~~~~l~~~l~~~~~LlVlD  201 (439)
                      .+|.|.|+.|.||||++..+......      +.+..  ++..    .+... .   ......+.++..++..+=.+++|
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~g   81 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG   81 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEc
Confidence            46899999999999999987766542      10000  0000    00000 0   01124456777788788899999


Q ss_pred             CCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHH
Q 037205          202 DVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR  236 (439)
Q Consensus       202 dv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~  236 (439)
                      ++.+.+.+.......   ..|..++.|+-......
T Consensus        82 Eird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~  113 (198)
T cd01131          82 EMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK  113 (198)
T ss_pred             CCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence            998877665544332   24566777777665543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR00767 rho transcription termination factor Rho

Probab=96.52  E-value=0.0027  Score=63.06  Aligned_cols=26  Identities=19%  Similarity=-0.004  Sum_probs=22.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -..++|+|++|.|||||++.+++.+.
T Consensus       168 Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       168 GQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CCEEEEECCCCCChhHHHHHHHHhhc
Confidence            35789999999999999999998754

Members of this family differ in the specificity of RNA binding.

>PRK04132 replication factor C small subunit; Provisional

Probab=96.51  E-value=0.028  Score=61.37  Aligned_cols=138  Identities=14%  Similarity=0.149  Sum_probs=83.3

Q ss_pred             CCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhc-CCCCCCcHHHHHHHh----c-----c-CCceEEecCCCCH--HHH
Q 037205          145 IGGIGKTTIARATFDKISR--YLLATKLISNLLK-DENAIPGIDLNFRRL----S-----R-MKVLIFFYDVTCF--SQL  209 (439)
Q Consensus       145 ~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~-~~~~~~~~~~l~~~l----~-----~-~~~LlVlDdv~~~--~~~  209 (439)
                      +.++||||+|..+++++..  |-      ..... +..+..+.+.+++.+    .     + +.-++|+|+++..  +..
T Consensus       574 Ph~lGKTT~A~ala~~l~g~~~~------~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQ  647 (846)
T PRK04132        574 PTVLHNTTAALALARELFGENWR------HNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ  647 (846)
T ss_pred             CCcccHHHHHHHHHHhhhccccc------CeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHH
Confidence            7899999999999887621  10      00000 000101222222221    1     1 3468999999754  356


Q ss_pred             HHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          210 ESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       210 ~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                      .+|...+......+++|++|.+.. +.... .....+++.+++.++..+.+.+.+.......  ..+....+++.++|.+
T Consensus       648 nALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i--~~e~L~~Ia~~s~GDl  725 (846)
T PRK04132        648 QALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL--TEEGLQAILYIAEGDM  725 (846)
T ss_pred             HHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCH
Confidence            666666655556777777666543 32222 2357899999999999888877664332221  2567889999999988


Q ss_pred             HHH
Q 037205          288 LAL  290 (439)
Q Consensus       288 Lal  290 (439)
                      ...
T Consensus       726 R~A  728 (846)
T PRK04132        726 RRA  728 (846)
T ss_pred             HHH
Confidence            554

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=96.51  E-value=0.033  Score=60.40  Aligned_cols=49  Identities=20%  Similarity=0.276  Sum_probs=38.6

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++|+...++.+.+.+..-...-..|.|+|.+|+|||++|+.+++...
T Consensus       376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~  424 (686)
T PRK15429        376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG  424 (686)
T ss_pred             cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            4699999999988876654333345688999999999999999987543

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.014  Score=60.80  Aligned_cols=173  Identities=20%  Similarity=0.233  Sum_probs=96.6

Q ss_pred             CCCCCcccccchHHHHHhhhcc--CC--------CCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205          111 DNKSQLVGVESRVEEIESLLSV--ES--------KDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD  177 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~  177 (439)
                      ....+.-|.|+..+++.+.+..  +.        -=++-+.++|+||.|||.||++++..... |.  .-..+..-..+-
T Consensus       147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGv  226 (596)
T COG0465         147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV  226 (596)
T ss_pred             cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCC
Confidence            3446788998877777776542  11        12567899999999999999999988765 21  000000000000


Q ss_pred             CCCCCcHHHHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCCCCCCc--EEEE-EeCchHHH---
Q 037205          178 ENAIPGIDLNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDWLTPVS--RIIL-TTRNKQVL---  235 (439)
Q Consensus       178 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~gs--~Iii-TTR~~~v~---  235 (439)
                       ......+...+..++-++.+++|.++..                ..+.+|+.....++.+.  .|+. |.|. .|+   
T Consensus       227 -GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRp-dVlD~A  304 (596)
T COG0465         227 -GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRP-DVLDPA  304 (596)
T ss_pred             -CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCc-ccchHh
Confidence             0000224445555667899999887421                23667776666666333  2332 4443 332   


Q ss_pred             --HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCC-CcchHHHHHHHHHHhCCCcHH
Q 037205          236 --RNWGVSKIYEMEALEYHHALELFSRHAFKRNHP-DVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       236 --~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlPLa  289 (439)
                        ..-..+..+.++..+...-.+.+.-++-..... .-++    ..|++.+-|.-.|
T Consensus       305 LlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsGA  357 (596)
T COG0465         305 LLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSGA  357 (596)
T ss_pred             hcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcccc
Confidence              222345566677666666666666565333222 2122    2377777777555

>PRK06762 hypothetical protein; Provisional

Probab=96.47  E-value=0.0026  Score=55.86  Aligned_cols=24  Identities=38%  Similarity=0.482  Sum_probs=22.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+|.|+|++|+||||+|+.+.+.+
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            688999999999999999998886

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=96.46  E-value=0.015  Score=50.89  Aligned_cols=132  Identities=20%  Similarity=0.178  Sum_probs=68.8

Q ss_pred             cccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH--------HHHHHHHHHhcC-----CCCC-
Q 037205          118 GVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL--------LATKLISNLLKD-----ENAI-  181 (439)
Q Consensus       118 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~--------~~~~ll~~l~~~-----~~~~-  181 (439)
                      |-+...+.|.+.+..+ .-...+.++|..|+||+|+|..+++.+-.  ..        ....+......+     .... 
T Consensus         1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~   79 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK   79 (162)
T ss_dssp             S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred             CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence            3445566666666522 22456789999999999999998876532  00        111111110000     0010 


Q ss_pred             -C-cHHHHHH---Hhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcC
Q 037205          182 -P-GIDLNFR---RLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEME  247 (439)
Q Consensus       182 -~-~~~~l~~---~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~  247 (439)
                       . .++.+++   .+.     +..-++|+|+++..  +...+|+..+.....++.+|++|.+.. +.... .....+.++
T Consensus        80 ~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~  159 (162)
T PF13177_consen   80 KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFR  159 (162)
T ss_dssp             SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE-
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecC
Confidence             1 3344443   322     34568899999753  445666665555557889988888664 33332 334566666


Q ss_pred             CCC
Q 037205          248 ALE  250 (439)
Q Consensus       248 ~L~  250 (439)
                      +|+
T Consensus       160 ~ls  162 (162)
T PF13177_consen  160 PLS  162 (162)
T ss_dssp             ---
T ss_pred             CCC
Confidence            653

...

>PRK08233 hypothetical protein; Provisional

Probab=96.45  E-value=0.0024  Score=56.74  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=22.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..+|+|.|.+|+||||||..+...+
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l   27 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKL   27 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhC
Confidence            4689999999999999999988765

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.44  E-value=0.0029  Score=57.81  Aligned_cols=27  Identities=37%  Similarity=0.610  Sum_probs=23.9

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+..+|+|.|.+|+||||||+.++..+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            457799999999999999999988765

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.43  E-value=0.01  Score=68.63  Aligned_cols=28  Identities=11%  Similarity=0.083  Sum_probs=25.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..+-|.++|++|.|||.||++++.....
T Consensus      1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206       1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence            4678899999999999999999998766

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=96.40  E-value=0.013  Score=56.16  Aligned_cols=149  Identities=21%  Similarity=0.295  Sum_probs=89.2

Q ss_pred             CCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------------HHHHHHHHH
Q 037205          114 SQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISR----YL-------------LATKLISNL  174 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------------~~~~ll~~l  174 (439)
                      ..++|-..+-+++.+++..  ...+...+.|+|+.|.|||+|......+...    |+             ....+..++
T Consensus        24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql  103 (408)
T KOG2228|consen   24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL  103 (408)
T ss_pred             cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence            4689999999999988864  1223446789999999999998777666433    22             223333333


Q ss_pred             hcCCC-------CC-CcHHHHHHHhcc------CCceEEecCCCCH----HH--HHHHhcCCC-CCCCCcEEEEEeCchH
Q 037205          175 LKDEN-------AI-PGIDLNFRRLSR------MKVLIFFYDVTCF----SQ--LESLMGSLD-WLTPVSRIILTTRNKQ  233 (439)
Q Consensus       175 ~~~~~-------~~-~~~~~l~~~l~~------~~~LlVlDdv~~~----~~--~~~l~~~~~-~~~~gs~IiiTTR~~~  233 (439)
                      ..+..       .. +....+...|+.      -+++.|+|.++-.    .|  +-.+..... ...|-+-|-+|||-..
T Consensus       104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~  183 (408)
T KOG2228|consen  104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI  183 (408)
T ss_pred             HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence            22111       11 144555555543      3588888888532    11  333332222 2345566779999542


Q ss_pred             -------HHHhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          234 -------VLRNWGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       234 -------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                             |-..+.-..++-++.++.++-.+++++..
T Consensus       184 lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll  219 (408)
T KOG2228|consen  184 LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL  219 (408)
T ss_pred             HHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence                   22333333466678888888888887765

>PRK03839 putative kinase; Provisional

Probab=96.37  E-value=0.0029  Score=56.34  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=22.3

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|.|.|++|+||||+|+.+++.+..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~   26 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGY   26 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999998754

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.35  E-value=0.0032  Score=46.62  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=19.2

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +|+|.|.+|+||||+|+.+.+.
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999987655

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.033  Score=58.91  Aligned_cols=90  Identities=22%  Similarity=0.337  Sum_probs=54.1

Q ss_pred             CCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCC
Q 037205          114 SQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENA  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~  180 (439)
                      .++=|.+.-..+|.+-+..          +--+..-|.+||+||.|||-||++|+...+- |+  ---+++.--.++.  
T Consensus       672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqS--  749 (953)
T KOG0736|consen  672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQS--  749 (953)
T ss_pred             hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcch--
Confidence            4566777777777765432          1122456889999999999999999988765 43  0011111111110  


Q ss_pred             CCcHHHHHHHh-ccCCceEEecCCCC
Q 037205          181 IPGIDLNFRRL-SRMKVLIFFYDVTC  205 (439)
Q Consensus       181 ~~~~~~l~~~l-~~~~~LlVlDdv~~  205 (439)
                      ...+..+.++. ...+++|.||.+++
T Consensus       750 E~NVR~VFerAR~A~PCVIFFDELDS  775 (953)
T KOG0736|consen  750 EENVREVFERARSAAPCVIFFDELDS  775 (953)
T ss_pred             HHHHHHHHHHhhccCCeEEEeccccc
Confidence            00223333333 35899999999965

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.33  E-value=0.012  Score=56.24  Aligned_cols=28  Identities=25%  Similarity=0.381  Sum_probs=23.4

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+.+++.++|++|+||||++..++..+.
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~   97 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLK   97 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3468999999999999999998876553

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.18  Score=47.86  Aligned_cols=169  Identities=17%  Similarity=0.217  Sum_probs=90.3

Q ss_pred             CCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          113 KSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      =+++-|.+...+.|.+..-.          ....-+-|.++|++|.||+.||++|+..... |+  ....+.+...+...
T Consensus       132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESE  211 (439)
T KOG0739|consen  132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE  211 (439)
T ss_pred             hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHH
Confidence            35678888888888874321          2233688999999999999999999876544 32  22223333222211


Q ss_pred             CCCcHHHHHHHh-ccCCceEEecCCCCH---------HHHH----HHhcCCC---CCCCCcEEEEEeCchHHHHhc---C
Q 037205          180 AIPGIDLNFRRL-SRMKVLIFFYDVTCF---------SQLE----SLMGSLD---WLTPVSRIILTTRNKQVLRNW---G  239 (439)
Q Consensus       180 ~~~~~~~l~~~l-~~~~~LlVlDdv~~~---------~~~~----~l~~~~~---~~~~gs~IiiTTR~~~v~~~~---~  239 (439)
                        .++..+.+.. .+++-.|.+|.++..         +...    .++....   ....|.-|+-.|.-+-++.+.   .
T Consensus       212 --kLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRR  289 (439)
T KOG0739|consen  212 --KLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRR  289 (439)
T ss_pred             --HHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHH
Confidence              0222222222 357889999998532         1111    2222222   123344555567666554442   1


Q ss_pred             CCeEEEcCCCCHHHH-HHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC
Q 037205          240 VSKIYEMEALEYHHA-LELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV  286 (439)
Q Consensus       240 ~~~~~~l~~L~~~ea-~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl  286 (439)
                      ....+-++ |.+..| ..+|.-+....  |..-.+...+++.++..|.
T Consensus       290 FekRIYIP-LPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGy  334 (439)
T KOG0739|consen  290 FEKRIYIP-LPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGY  334 (439)
T ss_pred             hhcceecc-CCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCC
Confidence            22333343 444455 44565555322  2222344566777777665

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.31  E-value=0.0034  Score=56.08  Aligned_cols=27  Identities=26%  Similarity=0.209  Sum_probs=23.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.++|+|.|++|+||||+|+.+...+.
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g   28 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKYG   28 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999986653

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=96.31  E-value=0.016  Score=49.88  Aligned_cols=73  Identities=25%  Similarity=0.256  Sum_probs=43.1

Q ss_pred             EecCCCChhHHHHHHHHhHHhH-HH--------------HHHHHHHHHhcCCCCCC---cHHHHHHHhcc--CCceEEec
Q 037205          142 IWGIGGIGKTTIARATFDKISR-YL--------------LATKLISNLLKDENAIP---GIDLNFRRLSR--MKVLIFFY  201 (439)
Q Consensus       142 I~G~gGiGKTtLA~~v~~~~~~-f~--------------~~~~ll~~l~~~~~~~~---~~~~l~~~l~~--~~~LlVlD  201 (439)
                      |.|+||+||||+|+.++.++.- .+              -....+.........++   ....+...+..  ...-+|||
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild   80 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD   80 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence            6899999999999999988643 11              01112222222222222   44555555553  35678899


Q ss_pred             CC-CCHHHHHHHhc
Q 037205          202 DV-TCFSQLESLMG  214 (439)
Q Consensus       202 dv-~~~~~~~~l~~  214 (439)
                      ++ .+.++.+.|..
T Consensus        81 GfPrt~~Qa~~l~~   94 (151)
T PF00406_consen   81 GFPRTLEQAEALEE   94 (151)
T ss_dssp             SB-SSHHHHHHHHH
T ss_pred             eccccHHHHHHHHH
Confidence            99 56666665543

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.30  E-value=0.0028  Score=52.75  Aligned_cols=26  Identities=38%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..+.|+|++|+||||+|+.++.....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46889999999999999999877654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.038  Score=55.21  Aligned_cols=150  Identities=17%  Similarity=0.152  Sum_probs=81.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhcCC-CCCCcHHHHHHHhc--cCCceEEecCCCCHHH-----
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDE-NAIPGIDLNFRRLS--RMKVLIFFYDVTCFSQ-----  208 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~~~-~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~-----  208 (439)
                      -|--.++|+||.|||++..++++.+.-         .+..-. .....-..+++.|.  ..+-+||+.|++..-+     
T Consensus       235 KRGYLLYGPPGTGKSS~IaAmAn~L~y---------dIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~  305 (457)
T KOG0743|consen  235 KRGYLLYGPPGTGKSSFIAAMANYLNY---------DIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERR  305 (457)
T ss_pred             hccceeeCCCCCCHHHHHHHHHhhcCC---------ceEEeeeccccCcHHHHHHHHhCCCCcEEEEeeccccccccccc
Confidence            356779999999999999999987642         000000 01112233555554  3566777787753211     


Q ss_pred             ---------------HHHHhcCCCC--CCC-CcEEE-EEeCchHHHHhc-----CCCeEEEcCCCCHHHHHHHHHHhhhc
Q 037205          209 ---------------LESLMGSLDW--LTP-VSRII-LTTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSRHAFK  264 (439)
Q Consensus       209 ---------------~~~l~~~~~~--~~~-gs~Ii-iTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~  264 (439)
                                     +.-|+..+..  .+. +-||| .||....-+...     ..+--+.+.-=+.+.-..|+.++...
T Consensus       306 ~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~  385 (457)
T KOG0743|consen  306 KKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI  385 (457)
T ss_pred             ccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence                           2223333321  122 34665 577765443331     23345678888888888888888733


Q ss_pred             CCCCCcchHHHHHHHHHHhCCCcHHHHHHH-HhhcCC
Q 037205          265 RNHPDVGYEKLSSNVMKYVQGVPLALKVLG-CFLYKR  300 (439)
Q Consensus       265 ~~~~~~~~~~~~~~i~~~~~GlPLal~~~g-~~L~~~  300 (439)
                      +. +    ..+..+|.+...|.-+.=..++ .++..+
T Consensus       386 ~~-~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~  417 (457)
T KOG0743|consen  386 EE-D----HRLFDEIERLIEETEVTPAQVAEELMKNK  417 (457)
T ss_pred             CC-C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence            22 2    2345555555555544433343 344444

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.29  E-value=0.011  Score=53.04  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=23.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +.|.+.|.||+||||+|+++...++.
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~   27 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQ   27 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHH
Confidence            46788999999999999999988765

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.27  E-value=0.018  Score=58.46  Aligned_cols=28  Identities=25%  Similarity=0.284  Sum_probs=24.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ...+|.++|.+|+||||+|..++..+..
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~  121 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKK  121 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            4679999999999999999999877654

>TIGR00235 udk uridine kinase

Probab=96.26  E-value=0.0047  Score=56.42  Aligned_cols=28  Identities=36%  Similarity=0.576  Sum_probs=23.8

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ....+|+|.|++|+||||||+.+...+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3467999999999999999999886653

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.25  E-value=0.0088  Score=58.32  Aligned_cols=27  Identities=26%  Similarity=0.421  Sum_probs=23.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+++++|++|+||||++..++..+.
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~  139 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYK  139 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            468999999999999999999887654

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=96.25  E-value=0.038  Score=59.50  Aligned_cols=49  Identities=14%  Similarity=0.247  Sum_probs=37.1

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...++|.+..+.++.+....-......|.|+|.+|+||+++|+.+.+..
T Consensus       324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s  372 (638)
T PRK11388        324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES  372 (638)
T ss_pred             ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence            4568898888888777665422233347899999999999999998754

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=96.24  E-value=0.057  Score=56.40  Aligned_cols=51  Identities=20%  Similarity=0.363  Sum_probs=41.3

Q ss_pred             CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ....++|....++++.+.+..-...-..|.|+|..|+|||++|+.+.+...
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~  235 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP  235 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence            346799999999999988875444455688999999999999999987643

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.031  Score=52.66  Aligned_cols=89  Identities=25%  Similarity=0.416  Sum_probs=58.3

Q ss_pred             CCcccccchHHHHHhhhccC-----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          114 SQLVGVESRVEEIESLLSVE-----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      .++=|.++.+++|.+-....           -....-|.+||.+|.|||-||++|+|+.+. |+  +-.++++.-++..+
T Consensus       185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGp  264 (440)
T KOG0726|consen  185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP  264 (440)
T ss_pred             cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccch
Confidence            45667899999998865431           123567789999999999999999999887 66  44444444444332


Q ss_pred             CCCcHHHHHHHh-ccCCceEEecCCC
Q 037205          180 AIPGIDLNFRRL-SRMKVLIFFYDVT  204 (439)
Q Consensus       180 ~~~~~~~l~~~l-~~~~~LlVlDdv~  204 (439)
                      .  .+..+.+.. .+-+-.+.+|.++
T Consensus       265 k--lvRqlF~vA~e~apSIvFiDEId  288 (440)
T KOG0726|consen  265 K--LVRELFRVAEEHAPSIVFIDEID  288 (440)
T ss_pred             H--HHHHHHHHHHhcCCceEEeehhh
Confidence            1  223333332 2456677778773

>PTZ00301 uridine kinase; Provisional

Probab=96.24  E-value=0.0043  Score=56.78  Aligned_cols=25  Identities=24%  Similarity=0.527  Sum_probs=22.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..+|||.|.+|.||||||+.+.+.+
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHH
Confidence            4689999999999999999877664

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.23  E-value=0.0063  Score=56.54  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .....+|+|.|.+|.|||||++.+...+.
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34678999999999999999998776654

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=96.21  E-value=0.032  Score=54.61  Aligned_cols=142  Identities=19%  Similarity=0.144  Sum_probs=74.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH------H-H-----HHHHHHHH-------HhcCC---------CCCCcHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR------Y-L-----LATKLISN-------LLKDE---------NAIPGIDLNF  188 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f-~-----~~~~ll~~-------l~~~~---------~~~~~~~~l~  188 (439)
                      ...+.++|+.|+||||+|+.++..+--      - -     ....+...       +....         ..+ .++.++
T Consensus        21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I-~id~iR   99 (325)
T PRK08699         21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQI-KIDAVR   99 (325)
T ss_pred             ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCc-CHHHHH
Confidence            456889999999999999998766420      0 0     00000000       00000         001 233333


Q ss_pred             ---HHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcCCCCHHHHHH
Q 037205          189 ---RRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALE  256 (439)
Q Consensus       189 ---~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~  256 (439)
                         +.+.     +++-++|+|+++..  .....++..+.....++.+|++|.+.. +.... .....+.+.+++.+++.+
T Consensus       100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~  179 (325)
T PRK08699        100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALA  179 (325)
T ss_pred             HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHH
Confidence               3332     23345566877543  333444433332234566777777654 33332 234678899999999988


Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          257 LFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       257 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      .+....     .... .    ..+..++|-|+.
T Consensus       180 ~L~~~~-----~~~~-~----~~l~~~~g~p~~  202 (325)
T PRK08699        180 YLRERG-----VAEP-E----ERLAFHSGAPLF  202 (325)
T ss_pred             HHHhcC-----CCcH-H----HHHHHhCCChhh
Confidence            776531     1111 1    123568898864

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.19  E-value=0.0045  Score=62.44  Aligned_cols=45  Identities=27%  Similarity=0.303  Sum_probs=37.0

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .++++.+..++.+...|..    .+.|.++|++|+|||++|+.+++...
T Consensus       175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            4577888888888888863    34678899999999999999988763

>PRK00625 shikimate kinase; Provisional

Probab=96.19  E-value=0.004  Score=55.20  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=22.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|.|+||+|+||||+++.+.+.+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~   26 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSL   26 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3789999999999999999888654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.18  E-value=0.016  Score=51.64  Aligned_cols=109  Identities=15%  Similarity=0.195  Sum_probs=58.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-------------------HH----HHHHHHHHHhc-----CC-CCCC----c
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-------------------YL----LATKLISNLLK-----DE-NAIP----G  183 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------f~----~~~~ll~~l~~-----~~-~~~~----~  183 (439)
                      -.+++|.|..|.|||||++.++.....                   +.    ...+++..+.-     .. ...+    .
T Consensus        25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~q  104 (180)
T cd03214          25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQ  104 (180)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence            458999999999999999988754321                   00    00112222211     11 1222    1


Q ss_pred             HHHHHHHhccCCceEEecCCC---CHHHHHHHhcCCCCC-CC-CcEEEEEeCchHHHHhcCCCeEEEc
Q 037205          184 IDLNFRRLSRMKVLIFFYDVT---CFSQLESLMGSLDWL-TP-VSRIILTTRNKQVLRNWGVSKIYEM  246 (439)
Q Consensus       184 ~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IiiTTR~~~v~~~~~~~~~~~l  246 (439)
                      .-.+-+.+-..+-++++|+..   +....+.+...+... .. +..||++|.+......+ ++..+.+
T Consensus       105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l  171 (180)
T cd03214         105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILL  171 (180)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            233455666788999999883   222222222222111 12 66788888887765443 2344443

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=96.18  E-value=0.009  Score=51.93  Aligned_cols=26  Identities=23%  Similarity=0.118  Sum_probs=21.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..|-|++-.|.||||+|...+-+...
T Consensus         3 G~i~vy~g~G~Gkt~~a~g~~~ra~~   28 (159)
T cd00561           3 GLIQVYTGNGKGKTTAALGLALRALG   28 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46788888899999999887766554

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK04040 adenylate kinase; Provisional

Probab=96.17  E-value=0.0045  Score=55.67  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=22.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|+|+|++|+||||+++.+.+.+.
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence            5799999999999999999988873

>PRK00131 aroK shikimate kinase; Reviewed

Probab=96.15  E-value=0.0047  Score=54.36  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=23.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ...|.|+|++|+||||+|+.++..+..
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l~~   30 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRLGY   30 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            457899999999999999999988754

>PRK06547 hypothetical protein; Provisional

Probab=96.15  E-value=0.0077  Score=53.32  Aligned_cols=28  Identities=32%  Similarity=0.312  Sum_probs=24.2

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ....+|+|.|.+|+||||+|+.+.+...
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~   40 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTG   40 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4578999999999999999999887643

>TIGR01069 mutS2 MutS2 family protein

Probab=96.15  E-value=0.0083  Score=65.39  Aligned_cols=167  Identities=16%  Similarity=0.137  Sum_probs=84.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH-----HH---------HHHHHHHHHhcCCC---C---CC-cHHHHHHHhc--
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR-----YL---------LATKLISNLLKDEN---A---IP-GIDLNFRRLS--  192 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~---------~~~~ll~~l~~~~~---~---~~-~~~~l~~~l~--  192 (439)
                      +.++++|+|+.|.|||||.+.+.-..-.     ++         ...++...+.....   .   +. ....+...+.  
T Consensus       321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~  400 (771)
T TIGR01069       321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKT  400 (771)
T ss_pred             CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhc
Confidence            3478999999999999999988655211     21         11111111111110   0   11 1222233333  


Q ss_pred             cCCceEEecCCCC---HHHHH----HHhcCCCCCCCCcEEEEEeCchHHHHhcCCCe-E--EEcCCCCHHHHHHHHHHhh
Q 037205          193 RMKVLIFFYDVTC---FSQLE----SLMGSLDWLTPVSRIILTTRNKQVLRNWGVSK-I--YEMEALEYHHALELFSRHA  262 (439)
Q Consensus       193 ~~~~LlVlDdv~~---~~~~~----~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~-~--~~l~~L~~~ea~~Lf~~~a  262 (439)
                      ..+-|+++|+...   ...-.    .++..+.  ..|+.+|+||....+........ +  +.+. ++. +... | .+-
T Consensus       401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p-~Yk  474 (771)
T TIGR01069       401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-P-TYK  474 (771)
T ss_pred             CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-e-EEE
Confidence            4789999999843   22222    2232322  35789999999887644321111 1  1111 111 1111 0 111


Q ss_pred             hcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHHH
Q 037205          263 FKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKL  312 (439)
Q Consensus       263 ~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l  312 (439)
                      +..+.+.   ...+-.|++.+ |+|-.+..-|..+.+......+..+.+|
T Consensus       475 l~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L  520 (771)
T TIGR01069       475 LLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKL  520 (771)
T ss_pred             ECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            1112222   34466676665 8888888777777654444555555544

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PHA00729 NTP-binding motif containing protein

Probab=96.15  E-value=0.0077  Score=55.35  Aligned_cols=27  Identities=30%  Similarity=0.294  Sum_probs=23.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +...|.|+|.+|+||||||..+.+.+.
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445789999999999999999988753

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.14  E-value=0.0044  Score=50.21  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=19.1

Q ss_pred             EEEecCCCChhHHHHHHHHhHH
Q 037205          140 LGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      |-|+|.+|+|||+||..++..+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999977665

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.11  E-value=0.0047  Score=52.39  Aligned_cols=24  Identities=38%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      |.|+|.+|+|||+||+.+++....
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~   25 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGR   25 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhc
Confidence            679999999999999999988754

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=96.09  E-value=0.01  Score=51.96  Aligned_cols=28  Identities=29%  Similarity=0.491  Sum_probs=23.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH-HH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR-YL  165 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~-f~  165 (439)
                      +-|.++||.|.||||+.+.+++.+.- |+
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~   31 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFI   31 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence            34789999999999999999887655 44

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.06  E-value=0.029  Score=56.69  Aligned_cols=27  Identities=22%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|.++|.+|+||||+|..++..+.
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~  125 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ  125 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            368999999999999999998876654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]

Probab=96.03  E-value=0.027  Score=54.73  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=20.8

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHH
Q 037205          134 SKDVYALGIWGIGGIGKTTIARAT  157 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v  157 (439)
                      .+++..|.+.|.+|.|||-||.+.
T Consensus       242 d~dI~lV~L~G~AGtGKTlLALaA  265 (436)
T COG1875         242 DDDIDLVSLGGKAGTGKTLLALAA  265 (436)
T ss_pred             CCCCCeEEeeccCCccHhHHHHHH
Confidence            467999999999999999988653

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=96.02  E-value=0.0064  Score=55.29  Aligned_cols=28  Identities=36%  Similarity=0.560  Sum_probs=25.4

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+.+|||-|.+|.||||+|+.+++.+.
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~   33 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLG   33 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            4578999999999999999999998876

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.01  E-value=0.032  Score=49.22  Aligned_cols=105  Identities=16%  Similarity=0.210  Sum_probs=58.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-----HH----HH----HHHHHHHh--cCCC---C-------CC----cHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-----YL----LA----TKLISNLL--KDEN---A-------IP----GIDLN  187 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~----~~----~~ll~~l~--~~~~---~-------~~----~~~~l  187 (439)
                      -.+++|.|..|.|||||.+.++.-...     ++    +.    ...-..+.  ....   .       .+    ..-.+
T Consensus        28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~l  107 (171)
T cd03228          28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAI  107 (171)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHH
Confidence            458999999999999999998765432     10    00    00000010  0000   0       11    11223


Q ss_pred             HHHhccCCceEEecCCCC------HHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEc
Q 037205          188 FRRLSRMKVLIFFYDVTC------FSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM  246 (439)
Q Consensus       188 ~~~l~~~~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l  246 (439)
                      .+.+..++-+++||+-..      ...+..++..+.   .+..||++|.+......  ++..+.+
T Consensus       108 a~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l  167 (171)
T cd03228         108 ARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVL  167 (171)
T ss_pred             HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence            445567888999998742      222333333332   35678888888777654  4555554

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.0096  Score=55.22  Aligned_cols=87  Identities=17%  Similarity=0.368  Sum_probs=53.1

Q ss_pred             cccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCC
Q 037205          116 LVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAI  181 (439)
Q Consensus       116 ~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~  181 (439)
                      +=|=.+++++|.+....           +-+...-|.++|++|.|||-+|++++|+... |+  +-.++.+.-.++..  
T Consensus       179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgega--  256 (435)
T KOG0729|consen  179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGA--  256 (435)
T ss_pred             ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhH--
Confidence            33455566666654321           2245677899999999999999999999776 54  34444433333211  


Q ss_pred             CcHHHHHHHhcc-CCceEEecCCC
Q 037205          182 PGIDLNFRRLSR-MKVLIFFYDVT  204 (439)
Q Consensus       182 ~~~~~l~~~l~~-~~~LlVlDdv~  204 (439)
                      ..+..+.+..+. |.++|.+|.++
T Consensus       257 rmvrelf~martkkaciiffdeid  280 (435)
T KOG0729|consen  257 RMVRELFEMARTKKACIIFFDEID  280 (435)
T ss_pred             HHHHHHHHHhcccceEEEEeeccc
Confidence            012333333444 55888889873

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.99  E-value=0.028  Score=49.35  Aligned_cols=106  Identities=18%  Similarity=0.144  Sum_probs=58.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH--------------HH------HHHHHHHHHhc-CCCCCC----cHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR--------------YL------LATKLISNLLK-DENAIP----GIDLNFRRL  191 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------f~------~~~~ll~~l~~-~~~~~~----~~~~l~~~l  191 (439)
                      -.+++|.|..|.|||||++.++.....              |+      ....+...+.. .....+    ..-.+.+.+
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral  106 (166)
T cd03223          27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLL  106 (166)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHH
Confidence            458999999999999999998765432              11      11122222211 111333    223345556


Q ss_pred             ccCCceEEecCCCC---HHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEc
Q 037205          192 SRMKVLIFFYDVTC---FSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM  246 (439)
Q Consensus       192 ~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l  246 (439)
                      ..++-++++|+-..   ....+.+...+...  +..||++|.+......  ++.++.+
T Consensus       107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l  160 (166)
T cd03223         107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL  160 (166)
T ss_pred             HcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence            67888999998732   22222222222111  3568888887765432  4555554

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.99  E-value=0.03  Score=55.65  Aligned_cols=27  Identities=26%  Similarity=0.348  Sum_probs=23.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.++|+++|++|+||||++..++..+.
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~  266 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFH  266 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            457999999999999999999876654

>PRK13531 regulatory ATPase RavA; Provisional

Probab=95.98  E-value=0.0063  Score=61.96  Aligned_cols=45  Identities=18%  Similarity=0.026  Sum_probs=37.4

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++||+..++.+...+..+    .-|.|.|++|+|||+||+.+.....
T Consensus        20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~   64 (498)
T PRK13531         20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ   64 (498)
T ss_pred             hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhc
Confidence            45999999999999887633    3478999999999999999887643

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=95.97  E-value=0.013  Score=58.16  Aligned_cols=94  Identities=19%  Similarity=0.267  Sum_probs=57.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH-------HH-HHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCC--C
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR-------YL-LATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVT--C  205 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~-~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~  205 (439)
                      ..+-+=|||..|.|||.|+-.+|+.+..       |- ...++-+.+.......+.+..+.+.+.++..||+||++.  +
T Consensus        61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V~D  140 (362)
T PF03969_consen   61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQVTD  140 (362)
T ss_pred             CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeeccc
Confidence            4677889999999999999999988754       11 112222222222223335566677788888899999872  3


Q ss_pred             H---HHHHHHhcCCCCCCCCcEEEEEeCch
Q 037205          206 F---SQLESLMGSLDWLTPVSRIILTTRNK  232 (439)
Q Consensus       206 ~---~~~~~l~~~~~~~~~gs~IiiTTR~~  232 (439)
                      .   .-+..|+..+  +..|. +||+|-|.
T Consensus       141 iaDAmil~rLf~~l--~~~gv-vlVaTSN~  167 (362)
T PF03969_consen  141 IADAMILKRLFEAL--FKRGV-VLVATSNR  167 (362)
T ss_pred             hhHHHHHHHHHHHH--HHCCC-EEEecCCC
Confidence            3   2345555443  23455 45555444

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.96  E-value=0.018  Score=49.29  Aligned_cols=103  Identities=18%  Similarity=0.183  Sum_probs=55.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-----HHHHHHHHHHHhcCCCCCC----cHHHHHHHhccCCceEEecCCC---
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-----YLLATKLISNLLKDENAIP----GIDLNFRRLSRMKVLIFFYDVT---  204 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~~~~~ll~~l~~~~~~~~----~~~~l~~~l~~~~~LlVlDdv~---  204 (439)
                      -.+++|.|..|.|||||++.+......     ++...   ..+. -....+    ..-.+-+.+..++-++++|+..   
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---~~i~-~~~~lS~G~~~rv~laral~~~p~illlDEP~~~L  101 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---VKIG-YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHL  101 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---EEEE-EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence            468999999999999999988765431     10000   0000 000022    1223455566788899999883   


Q ss_pred             CHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEc
Q 037205          205 CFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM  246 (439)
Q Consensus       205 ~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l  246 (439)
                      +......+...+...  +..||++|.+....... .+.++.+
T Consensus       102 D~~~~~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l  140 (144)
T cd03221         102 DLESIEALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL  140 (144)
T ss_pred             CHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence            222222222222111  24688888877665443 2344443

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.049  Score=57.19  Aligned_cols=147  Identities=18%  Similarity=0.177  Sum_probs=80.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCCCcHHHH-HHHhccCCceEEecCCCCH-------
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAIPGIDLN-FRRLSRMKVLIFFYDVTCF-------  206 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~-------  206 (439)
                      .-|.++|++|+|||-||-+++....- |+  ---+++..-.+...  ..+..+ .+.-..+++.|.+|.+++.       
T Consensus       702 ~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSE--q~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD  779 (952)
T KOG0735|consen  702 TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASE--QNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD  779 (952)
T ss_pred             cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccH--HHHHHHHHHhhccCCeEEEeccccccCcccCCC
Confidence            45889999999999999998876543 33  11222222222111  122223 3333458999999998642       


Q ss_pred             ------HHHHHHhcCCCC--CCCCcEEE-EEeCchHH----HHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchH
Q 037205          207 ------SQLESLMGSLDW--LTPVSRII-LTTRNKQV----LRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYE  273 (439)
Q Consensus       207 ------~~~~~l~~~~~~--~~~gs~Ii-iTTR~~~v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~  273 (439)
                            ....+|+..+..  .-.|--|+ .|||-.-+    +..-..++.+.-+..++.+-+++|....-....+.   .
T Consensus       780 sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~  856 (952)
T KOG0735|consen  780 STGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---D  856 (952)
T ss_pred             CCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---c
Confidence                  225556555542  12344444 47774322    22223344455556667777777765542111111   2


Q ss_pred             HHHHHHHHHhCCCcHH
Q 037205          274 KLSSNVMKYVQGVPLA  289 (439)
Q Consensus       274 ~~~~~i~~~~~GlPLa  289 (439)
                      -..+.++.++.|..-|
T Consensus       857 vdl~~~a~~T~g~tgA  872 (952)
T KOG0735|consen  857 VDLECLAQKTDGFTGA  872 (952)
T ss_pred             cchHHHhhhcCCCchh
Confidence            2356777788877655

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.93  E-value=0.017  Score=51.32  Aligned_cols=105  Identities=18%  Similarity=0.149  Sum_probs=57.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-----HH----HH---HHHHHHHh--cCC-------------CCCC----cHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-----YL----LA---TKLISNLL--KDE-------------NAIP----GID  185 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~----~~---~~ll~~l~--~~~-------------~~~~----~~~  185 (439)
                      -.+++|.|..|.|||||++.++.....     ++    +.   ..+-..+.  .+.             ...+    ..-
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv  107 (178)
T cd03247          28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL  107 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence            357999999999999999988755332     10    00   01111110  000             0111    112


Q ss_pred             HHHHHhccCCceEEecCCCC---HH---HHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEc
Q 037205          186 LNFRRLSRMKVLIFFYDVTC---FS---QLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM  246 (439)
Q Consensus       186 ~l~~~l~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l  246 (439)
                      .+.+.+-.++-+++||+...   ..   .+..++..+   ..+..||++|.+......  ++..+.+
T Consensus       108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l  169 (178)
T cd03247         108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---LKDKTLIWITHHLTGIEH--MDKILFL  169 (178)
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence            33455567888999998842   22   222222222   236778888988877653  4555544

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=95.93  E-value=0.0097  Score=51.53  Aligned_cols=26  Identities=35%  Similarity=0.534  Sum_probs=23.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .+|-|+|.+|.||||||+++..++..
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~~   28 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLFA   28 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            57889999999999999999888754

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.91  E-value=0.036  Score=49.15  Aligned_cols=52  Identities=6%  Similarity=0.053  Sum_probs=34.9

Q ss_pred             HHHHHhccCCceEEecCC----CCHHHHHHH--hcCCCCCCCCcEEEEEeCchHHHHhcC
Q 037205          186 LNFRRLSRMKVLIFFYDV----TCFSQLESL--MGSLDWLTPVSRIILTTRNKQVLRNWG  239 (439)
Q Consensus       186 ~l~~~l~~~~~LlVlDdv----~~~~~~~~l--~~~~~~~~~gs~IiiTTR~~~v~~~~~  239 (439)
                      .+.+.+-+++-+|+-|.-    +....|+-+  +..+  ...|+.|+++|.+..+...+.
T Consensus       147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~~  204 (223)
T COG2884         147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR  204 (223)
T ss_pred             HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhcc
Confidence            355666788999998854    433333322  2222  346899999999999988874

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=95.90  E-value=0.0062  Score=55.24  Aligned_cols=35  Identities=17%  Similarity=0.252  Sum_probs=21.9

Q ss_pred             CceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCch
Q 037205          195 KVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK  232 (439)
Q Consensus       195 ~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~  232 (439)
                      ..++|+|++.+  ..++..++..   .+.||++|++--..
T Consensus       120 ~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~  156 (205)
T PF02562_consen  120 NAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS  156 (205)
T ss_dssp             SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred             ceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence            56899999954  4567777654   46899999987543

; GO: 0005524 ATP binding; PDB: 3B85_A.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=95.87  E-value=0.028  Score=52.51  Aligned_cols=52  Identities=13%  Similarity=0.206  Sum_probs=34.9

Q ss_pred             HHHHHHhccCCceEEecCC----CC--HHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhc
Q 037205          185 DLNFRRLSRMKVLIFFYDV----TC--FSQLESLMGSLDWLTPVSRIILTTRNKQVLRNW  238 (439)
Q Consensus       185 ~~l~~~l~~~~~LlVlDdv----~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~  238 (439)
                      -.+-+.|..++=||+||.-    +.  ...+-.++..+.  ..|..||+.|-|-.....+
T Consensus       148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~~  205 (254)
T COG1121         148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMAY  205 (254)
T ss_pred             HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHhh
Confidence            3466778889999999975    22  223444444443  2388999999988765553

>PRK05541 adenylylsulfate kinase; Provisional

Probab=95.87  E-value=0.0081  Score=53.26  Aligned_cols=27  Identities=41%  Similarity=0.731  Sum_probs=23.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|.+.|++|+||||+|+.+++.+.
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999998875

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=95.85  E-value=0.0073  Score=53.57  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=22.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|.+.|++|+||||+|+.+.....
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~   27 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLA   27 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhC
Confidence            5799999999999999999987754

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.83  E-value=0.0083  Score=52.86  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=20.7

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      |.|+|.+|+|||||++.+++.++.
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~~   25 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELKK   25 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhhc
Confidence            689999999999999999988853

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK13947 shikimate kinase; Provisional

Probab=95.82  E-value=0.0072  Score=53.21  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=22.3

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|.|+|++|+||||+|+.+.+.+..
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~   27 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSF   27 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            3789999999999999999988764

>PRK06217 hypothetical protein; Validated

Probab=95.81  E-value=0.0068  Score=54.20  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.4

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|.|.|.+|.||||+|+++...+.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~   26 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLD   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            488999999999999999987754

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=95.81  E-value=0.006  Score=50.72  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=17.8

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      |.|+|.+|+||||+|+.++..+..
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~   25 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGL   25 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT-
T ss_pred             EeeECCCccHHHHHHHHHHHHcCC
Confidence            679999999999999999887654

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=95.80  E-value=0.0066  Score=54.96  Aligned_cols=22  Identities=41%  Similarity=0.631  Sum_probs=19.4

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +|+|.|.+|+||||||+.+...
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999987654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=95.78  E-value=0.0067  Score=52.18  Aligned_cols=24  Identities=25%  Similarity=0.601  Sum_probs=20.9

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++.|+|++|+||||+|+.+.....
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~   24 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLG   24 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcC
Confidence            367999999999999999888754

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=95.77  E-value=0.0072  Score=51.50  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=21.3

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +|.|.|++|+||||+|+.+...+.
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~   24 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLG   24 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999987754

>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]

Probab=95.77  E-value=0.15  Score=50.44  Aligned_cols=54  Identities=19%  Similarity=0.164  Sum_probs=36.0

Q ss_pred             CeEEEcCCCCHHHHHHHHHHhhhc----CCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhh
Q 037205          241 SKIYEMEALEYHHALELFSRHAFK----RNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL  297 (439)
Q Consensus       241 ~~~~~l~~L~~~ea~~Lf~~~a~~----~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L  297 (439)
                      ..+++++..+.+|+-.+...+.-.    ...+.   ++..+++.-..+|+|--++.++.++
T Consensus       403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~  460 (461)
T KOG3928|consen  403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL  460 (461)
T ss_pred             cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence            456889999999998887655421    11222   4456677777799996666666554

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.76  E-value=0.014  Score=51.07  Aligned_cols=109  Identities=13%  Similarity=0.126  Sum_probs=57.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-----HH----HH----HHHHHHHhcCCCCCC----cHHHHHHHhccCCceEE
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-----YL----LA----TKLISNLLKDENAIP----GIDLNFRRLSRMKVLIF  199 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~----~~----~~ll~~l~~~~~~~~----~~~~l~~~l~~~~~LlV  199 (439)
                      -.+++|.|..|.|||||.+.++.....     ++    +.    .........-....+    ..-.+-+.+-..+-+++
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ill  105 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI  105 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence            458999999999999999998765432     11    00    000000000000122    12234445567788999


Q ss_pred             ecCCCC---HHHHHHHhcCCCCC-CCCcEEEEEeCchHHHHhcCCCeEEEc
Q 037205          200 FYDVTC---FSQLESLMGSLDWL-TPVSRIILTTRNKQVLRNWGVSKIYEM  246 (439)
Q Consensus       200 lDdv~~---~~~~~~l~~~~~~~-~~gs~IiiTTR~~~v~~~~~~~~~~~l  246 (439)
                      +|+..+   ....+.+...+... ..|..||++|.+...+... ++..+.+
T Consensus       106 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l  155 (163)
T cd03216         106 LDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL  155 (163)
T ss_pred             EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            998842   22222222222111 2366788889887654443 2344443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.75  E-value=0.0082  Score=53.33  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=20.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .++.|.|++|+|||||++.+...+
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARL   25 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            368999999999999999887654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=95.74  E-value=0.021  Score=54.30  Aligned_cols=98  Identities=17%  Similarity=0.110  Sum_probs=61.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH-----HH---------HHHHHHHHHhc--CCC---CCC------cHHHHHHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR-----YL---------LATKLISNLLK--DEN---AIP------GIDLNFRR  190 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~---------~~~~ll~~l~~--~~~---~~~------~~~~l~~~  190 (439)
                      +...++|+|.+|.|||||.+.+......     ++         ...++......  +..   ..+      ...-+...
T Consensus       110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~  189 (270)
T TIGR02858       110 RVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMML  189 (270)
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHH
Confidence            4578999999999999999999877653     11         11233222111  000   000      12222333


Q ss_pred             hc-cCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHH
Q 037205          191 LS-RMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR  236 (439)
Q Consensus       191 l~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~  236 (439)
                      +. ..+-++++|.+...+.+..+.....   .|..+|+||.+..+..
T Consensus       190 i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~  233 (270)
T TIGR02858       190 IRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED  233 (270)
T ss_pred             HHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence            33 5788999999988877777665543   5778999998766533

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=95.74  E-value=0.017  Score=53.84  Aligned_cols=40  Identities=25%  Similarity=0.335  Sum_probs=28.3

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++.+.+.....+..+|||.|+||.|||||.-.+...+.
T Consensus        15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~   54 (266)
T PF03308_consen   15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR   54 (266)
T ss_dssp             HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence            3444444444445678999999999999999998877664

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.72  E-value=0.013  Score=49.44  Aligned_cols=27  Identities=22%  Similarity=0.184  Sum_probs=22.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .-.+|.+.|.-|.||||+++.++..+.
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            345899999999999999999887653

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=95.72  E-value=0.0072  Score=55.77  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             EEEEecCCCChhHHHHHHHHhHH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +|||.|.+|+||||||+.+...+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHH
Confidence            58999999999999999877665

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=95.71  E-value=0.0074  Score=52.54  Aligned_cols=20  Identities=35%  Similarity=0.536  Sum_probs=18.5

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q 037205          139 ALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~  158 (439)
                      .|+|.|.||+||||++..+.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH
Confidence            58999999999999999887

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=95.70  E-value=0.0072  Score=54.18  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.5

Q ss_pred             EEEEecCCCChhHHHHHHHHhHH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +|+|.|.+|+||||||+.+...+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~   23 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRIL   23 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999987764

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK14974 cell division protein FtsY; Provisional

Probab=95.69  E-value=0.051  Score=53.32  Aligned_cols=28  Identities=21%  Similarity=0.254  Sum_probs=23.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +..+|+++|++|+||||++..++..+..
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~  166 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK  166 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3689999999999999988888766543

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=95.68  E-value=0.01  Score=52.28  Aligned_cols=88  Identities=20%  Similarity=0.252  Sum_probs=52.4

Q ss_pred             cccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------HHHHHHHHHhcCCC-CCC-
Q 037205          116 LVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----YL-------LATKLISNLLKDEN-AIP-  182 (439)
Q Consensus       116 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------~~~~ll~~l~~~~~-~~~-  182 (439)
                      +||.+..++++.+.+..-......|.|+|..|.||+.+|+.+.+.-..    |+       ..+.+-..+.+... ... 
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~   80 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTG   80 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTT
T ss_pred             CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccc
Confidence            478888888888877642223355679999999999999999885432    54       23334455555433 111 


Q ss_pred             ----cHHHHHHHhccCCceEEecCCCCH
Q 037205          183 ----GIDLNFRRLSRMKVLIFFYDVTCF  206 (439)
Q Consensus       183 ----~~~~l~~~l~~~~~LlVlDdv~~~  206 (439)
                          ....+.   ....=-|+||++++.
T Consensus        81 ~~~~~~G~l~---~A~~GtL~Ld~I~~L  105 (168)
T PF00158_consen   81 ARSDKKGLLE---QANGGTLFLDEIEDL  105 (168)
T ss_dssp             TSSEBEHHHH---HTTTSEEEEETGGGS
T ss_pred             cccccCCcee---eccceEEeecchhhh
Confidence                112222   223456888999754

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK00889 adenylylsulfate kinase; Provisional

Probab=95.66  E-value=0.012  Score=52.04  Aligned_cols=26  Identities=42%  Similarity=0.518  Sum_probs=23.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|.|.|++|+||||+|+.+...+.
T Consensus         4 g~~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          4 GVTVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45899999999999999999988764

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=95.63  E-value=0.0094  Score=53.14  Aligned_cols=24  Identities=38%  Similarity=0.567  Sum_probs=20.9

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +|+|.|.+|+||||||..+...+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~   24 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLR   24 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999998877653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK14530 adenylate kinase; Provisional

Probab=95.63  E-value=0.0097  Score=54.68  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=22.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|.|+|++|+||||+|+.++..+..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~   29 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGV   29 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5889999999999999999877653

>PRK12608 transcription termination factor Rho; Provisional

Probab=95.63  E-value=0.02  Score=56.47  Aligned_cols=36  Identities=14%  Similarity=0.024  Sum_probs=26.1

Q ss_pred             HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +...+..-. .-..++|+|.+|+|||||++.+++.+.
T Consensus       123 vID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~  158 (380)
T PRK12608        123 VVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVA  158 (380)
T ss_pred             hhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            555554322 224568999999999999999887664

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=95.61  E-value=0.01  Score=51.13  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      |.|+|++|.||||+|+.+...+..
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~   25 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGL   25 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC
Confidence            689999999999999999877654

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=95.61  E-value=0.0088  Score=55.55  Aligned_cols=26  Identities=27%  Similarity=0.456  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      -.++|+|.+|.|||||...+......
T Consensus        14 fr~viIG~sGSGKT~li~~lL~~~~~   39 (241)
T PF04665_consen   14 FRMVIIGKSGSGKTTLIKSLLYYLRH   39 (241)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence            35779999999999999988876544

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK13949 shikimate kinase; Provisional

Probab=95.60  E-value=0.01  Score=52.41  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=22.2

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|.|+|++|.||||+++.+++.+.-
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~   27 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGL   27 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4889999999999999999887654

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=95.59  E-value=0.014  Score=63.87  Aligned_cols=167  Identities=17%  Similarity=0.136  Sum_probs=84.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH-----HH---------HHHHHHHHHhcCCC---CCC----cHHHHHHHhc--
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR-----YL---------LATKLISNLLKDEN---AIP----GIDLNFRRLS--  192 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~---------~~~~ll~~l~~~~~---~~~----~~~~l~~~l~--  192 (439)
                      +.+++.|+|+.+.||||+.+.+.--.--     |+         +...++..+.....   ..+    ....+...+.  
T Consensus       326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~  405 (782)
T PRK00409        326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKA  405 (782)
T ss_pred             CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhC
Confidence            4578899999999999999987643211     22         11111111111111   011    1222333333  


Q ss_pred             cCCceEEecCCCC---HHHH----HHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCe---EEEcCCCCHHHHHHHHHHhh
Q 037205          193 RMKVLIFFYDVTC---FSQL----ESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSK---IYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       193 ~~~~LlVlDdv~~---~~~~----~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~---~~~l~~L~~~ea~~Lf~~~a  262 (439)
                      ..+-|+++|....   ...-    ..++..+.  ..|+.+|+||.+..+........   ...+. ++. +.  +-..+-
T Consensus       406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~--l~~~Yk  479 (782)
T PRK00409        406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ET--LRPTYR  479 (782)
T ss_pred             CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-Cc--CcEEEE
Confidence            3788999999842   2221    22222222  24789999999987765542211   11111 111 11  111111


Q ss_pred             hcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHHH
Q 037205          263 FKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKL  312 (439)
Q Consensus       263 ~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l  312 (439)
                      +..+.+.   ...+-.|++.+ |+|-.+..-|..+........+..+..|
T Consensus       480 l~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l  525 (782)
T PRK00409        480 LLIGIPG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASL  525 (782)
T ss_pred             EeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            1122222   34466677665 8888888777777654444555555544

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=95.58  E-value=0.01  Score=51.06  Aligned_cols=25  Identities=36%  Similarity=0.545  Sum_probs=22.7

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +|.|-|++|+||||+|+.+++.+.-
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl   26 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGL   26 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCC
Confidence            6889999999999999999988764

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=95.57  E-value=0.035  Score=55.34  Aligned_cols=41  Identities=24%  Similarity=0.310  Sum_probs=30.2

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....
T Consensus        68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~  108 (372)
T cd01121          68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK  108 (372)
T ss_pred             CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            34555566533344578999999999999999999876543

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK04296 thymidine kinase; Provisional

Probab=95.56  E-value=0.014  Score=52.46  Aligned_cols=93  Identities=15%  Similarity=0.068  Sum_probs=51.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH-----HHH---------HHHHHHHHhcCCCC--CCcHHHHHHHh---ccCCceE
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR-----YLL---------ATKLISNLLKDENA--IPGIDLNFRRL---SRMKVLI  198 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~~---------~~~ll~~l~~~~~~--~~~~~~l~~~l---~~~~~Ll  198 (439)
                      .++.|+|.+|.||||+|..++.+...     .++         ...+.+.+......  ......+.+.+   .++.-+|
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv   82 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCV   82 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence            46788999999999999998887754     110         01111111100000  11122222222   2355689


Q ss_pred             EecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCch
Q 037205          199 FFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK  232 (439)
Q Consensus       199 VlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~  232 (439)
                      |+|.+.-  .+++..+...+.  ..|..||+|.++.
T Consensus        83 iIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~  116 (190)
T PRK04296         83 LIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT  116 (190)
T ss_pred             EEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence            9999953  344444443321  3578899999973

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=95.55  E-value=0.0093  Score=52.59  Aligned_cols=64  Identities=11%  Similarity=0.090  Sum_probs=37.9

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH---HH---------HHHHHHHHHhcCCCCCC---cHHHHHHHhcc--CCceEEecC
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR---YL---------LATKLISNLLKDENAIP---GIDLNFRRLSR--MKVLIFFYD  202 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~---f~---------~~~~ll~~l~~~~~~~~---~~~~l~~~l~~--~~~LlVlDd  202 (439)
                      +.|.|.+|.|||++|.++......   |+         +++.+............   ....+.+.+..  +.-.+++|.
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc   81 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC   81 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence            678999999999999998765332   22         44444443333332222   33344444432  234788898


Q ss_pred             C
Q 037205          203 V  203 (439)
Q Consensus       203 v  203 (439)
                      +
T Consensus        82 l   82 (169)
T cd00544          82 L   82 (169)
T ss_pred             H
Confidence            7

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.55  E-value=0.016  Score=51.10  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++++|+|..|+|||||++.+...+.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            467999999999999999999876654

>PLN02674 adenylate kinase

Probab=95.54  E-value=0.042  Score=51.36  Aligned_cols=75  Identities=13%  Similarity=0.116  Sum_probs=44.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHH--------------HHhcCCCCCC---cHHHHHHHhccC--Cce
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR-YLLATKLIS--------------NLLKDENAIP---GIDLNFRRLSRM--KVL  197 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~--------------~l~~~~~~~~---~~~~l~~~l~~~--~~L  197 (439)
                      ..|.|.|+||+||||+|+.++.++.. ++....+++              .+.....-.+   ....+.+.+...  .--
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g  111 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG  111 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCc
Confidence            45789999999999999999887654 221122222              2222222111   345556666432  245


Q ss_pred             EEecCC-CCHHHHHHH
Q 037205          198 IFFYDV-TCFSQLESL  212 (439)
Q Consensus       198 lVlDdv-~~~~~~~~l  212 (439)
                      +|||.+ .+..|.+.|
T Consensus       112 ~ilDGfPRt~~Qa~~l  127 (244)
T PLN02674        112 FILDGFPRTVVQAQKL  127 (244)
T ss_pred             EEEeCCCCCHHHHHHH
Confidence            889998 555665544

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.53  E-value=0.014  Score=49.74  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|.|+|..|+|||||++.+.+.+.
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~   25 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELK   25 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4799999999999999999887764

>PRK05439 pantothenate kinase; Provisional

Probab=95.53  E-value=0.019  Score=55.54  Aligned_cols=28  Identities=32%  Similarity=0.400  Sum_probs=23.5

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .....+|||.|.+|+||||+|+.+...+
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l  110 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALL  110 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999999876644

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=95.52  E-value=0.013  Score=52.98  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +++|.++|+.|+||||.+.+++..+.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~   26 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLK   26 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHh
Confidence            36899999999999999888877654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=95.52  E-value=0.021  Score=52.45  Aligned_cols=102  Identities=14%  Similarity=0.167  Sum_probs=56.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH--hH---HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHH--hccC
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI--SR---YL--------LATKLISNLLKDEN---AIP----GIDLNFRR--LSRM  194 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~--~~---f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~--l~~~  194 (439)
                      .+.+.|+|+.|.|||||.+.+....  ..   |+        ...++...+.....   ..+    ..+.+...  +...
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~  108 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR  108 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence            4889999999999999999887432  11   22        22223333322222   111    12222222  2367


Q ss_pred             CceEEecCCCC---HHH----HHHHhcCCCCCC-CCcEEEEEeCchHHHHhc
Q 037205          195 KVLIFFYDVTC---FSQ----LESLMGSLDWLT-PVSRIILTTRNKQVLRNW  238 (439)
Q Consensus       195 ~~LlVlDdv~~---~~~----~~~l~~~~~~~~-~gs~IiiTTR~~~v~~~~  238 (439)
                      +.|++||+...   ..+    ..++...+...+ .+..+|+||.+...+...
T Consensus       109 ~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~  160 (213)
T cd03281         109 RSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS  160 (213)
T ss_pred             CcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence            89999999843   111    122222222111 235799999988876654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=95.52  E-value=0.04  Score=50.27  Aligned_cols=92  Identities=17%  Similarity=0.163  Sum_probs=53.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH----HH--------HHHHHHHHHhcCCC-----------CCCcHHHHHHHh-c
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR----YL--------LATKLISNLLKDEN-----------AIPGIDLNFRRL-S  192 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~--------~~~~ll~~l~~~~~-----------~~~~~~~l~~~l-~  192 (439)
                      ..-..|.|+||+|||||.+.++.-.+.    |.        -..++...+.+...           .....+-+.... .
T Consensus       137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs  216 (308)
T COG3854         137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS  216 (308)
T ss_pred             ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence            334779999999999999998877665    22        11111111111000           000111122222 2


Q ss_pred             cCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCc
Q 037205          193 RMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRN  231 (439)
Q Consensus       193 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~  231 (439)
                      ..+=++|.|.+...++..++....   ..|-+++.|..-
T Consensus       217 m~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG  252 (308)
T COG3854         217 MSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG  252 (308)
T ss_pred             cCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence            357789999998888777666654   367787776653

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=95.52  E-value=0.012  Score=53.22  Aligned_cols=26  Identities=31%  Similarity=0.254  Sum_probs=23.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|.|.|++|+||||+|+.+..+..
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~~   28 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHRA   28 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999988864

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=95.48  E-value=0.021  Score=59.90  Aligned_cols=45  Identities=24%  Similarity=0.474  Sum_probs=36.5

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+++|.+..++.+...+...  ...-+.|+|.+|+|||++|+.+++.
T Consensus        65 ~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~  109 (531)
T TIGR02902        65 DEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE  109 (531)
T ss_pred             HHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence            56999999999998876532  3345679999999999999999764

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=95.46  E-value=0.012  Score=52.45  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=21.4

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|.|.|.+|.||||+|+.+.+++.
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~   25 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG   25 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            477999999999999999998853

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=95.44  E-value=0.012  Score=49.93  Aligned_cols=26  Identities=27%  Similarity=0.308  Sum_probs=21.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+-|.|.|.||+||||||.+++....
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~   32 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTG   32 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhC
Confidence            34588999999999999999985543

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=95.40  E-value=0.0099  Score=51.91  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.0

Q ss_pred             EEEecCCCChhHHHHHHHHhHHh
Q 037205          140 LGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      |.|+|++|+||||+|+.+...+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999887754

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=95.38  E-value=0.017  Score=57.71  Aligned_cols=50  Identities=20%  Similarity=0.265  Sum_probs=36.1

Q ss_pred             CCcccccchHHHHHhhhcc------------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          114 SQLVGVESRVEEIESLLSV------------ESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..++|.+..++.+.-.+..            +....+-|.++|++|+|||++|+.+......
T Consensus        12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~   73 (441)
T TIGR00390        12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA   73 (441)
T ss_pred             hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4578888777777544431            1112467889999999999999999887654

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=95.34  E-value=0.046  Score=48.17  Aligned_cols=94  Identities=13%  Similarity=0.025  Sum_probs=53.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH---------HH------HHHHHHHHH----hcCCCCC-----C----------
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR---------YL------LATKLISNL----LKDENAI-----P----------  182 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~------~~~~ll~~l----~~~~~~~-----~----------  182 (439)
                      ...|-|++-.|.||||.|..++-+...         |+      --...+..+    .......     +          
T Consensus         5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~   84 (173)
T TIGR00708         5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA   84 (173)
T ss_pred             ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence            357788888999999999888776654         32      001111111    0000000     0          


Q ss_pred             cHHHHHHHhccC-CceEEecCCC--------CHHHHHHHhcCCCCCCCCcEEEEEeCchH
Q 037205          183 GIDLNFRRLSRM-KVLIFFYDVT--------CFSQLESLMGSLDWLTPVSRIILTTRNKQ  233 (439)
Q Consensus       183 ~~~~l~~~l~~~-~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~  233 (439)
                      ..+..++.+... -=|+|||.+.        +.+.+-.++...   .++..+|+|-|+..
T Consensus        85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r---p~~~evVlTGR~~p  141 (173)
T TIGR00708        85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER---PGHQHVIITGRGCP  141 (173)
T ss_pred             HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC---CCCCEEEEECCCCC
Confidence            233444455444 4599999983        333444444433   36779999999763

Alternate name: corrinoid adenosyltransferase.

>PRK14529 adenylate kinase; Provisional

Probab=95.34  E-value=0.06  Score=49.67  Aligned_cols=74  Identities=20%  Similarity=0.179  Sum_probs=44.4

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH-HHHH--------------HHHHHHHhcCCCCCC---cHHHHHHHhccC-CceEEe
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR-YLLA--------------TKLISNLLKDENAIP---GIDLNFRRLSRM-KVLIFF  200 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~-f~~~--------------~~ll~~l~~~~~~~~---~~~~l~~~l~~~-~~LlVl  200 (439)
                      |.|.|++|+||||+|+.++..+.- ++..              ...+..+.....-.+   ....+.+++... ..-+||
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~iL   82 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWLL   82 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEEE
Confidence            778999999999999999887654 2211              111222222222111   445566666432 456899


Q ss_pred             cCC-CCHHHHHHHh
Q 037205          201 YDV-TCFSQLESLM  213 (439)
Q Consensus       201 Ddv-~~~~~~~~l~  213 (439)
                      |.+ .+.+|.+.|.
T Consensus        83 DGfPRt~~Qa~~l~   96 (223)
T PRK14529         83 DGFPRNKVQAEKLW   96 (223)
T ss_pred             eCCCCCHHHHHHHH
Confidence            999 5666655553

>cd01394 radB RadB

Probab=95.33  E-value=0.025  Score=51.95  Aligned_cols=38  Identities=24%  Similarity=0.258  Sum_probs=28.5

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..|..+|..+-..-.++.|+|.+|+||||||.+++...
T Consensus         6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~   43 (218)
T cd01394           6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVET   43 (218)
T ss_pred             hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34555555343456789999999999999999987654

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=95.33  E-value=0.33  Score=50.72  Aligned_cols=54  Identities=17%  Similarity=0.282  Sum_probs=34.8

Q ss_pred             HHhccCCceEEecCCCC------HHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEcCC
Q 037205          189 RRLSRMKVLIFFYDVTC------FSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEA  248 (439)
Q Consensus       189 ~~l~~~~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~  248 (439)
                      ..+-.++=+||||.-.+      .+.++..+..+    +| .||+.|.++....... ..++.+.+
T Consensus       452 ~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~va-~~i~~~~~  511 (530)
T COG0488         452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRVA-TRIWLVED  511 (530)
T ss_pred             HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhhc-ceEEEEcC
Confidence            33446888999997643      33344444433    24 5888899998888763 56666654

>PRK13975 thymidylate kinase; Provisional

Probab=95.32  E-value=0.016  Score=52.26  Aligned_cols=25  Identities=36%  Similarity=0.403  Sum_probs=22.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..|.|.|+.|+||||+|+.+.+.+.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4789999999999999999988865

>PRK14526 adenylate kinase; Provisional

Probab=95.32  E-value=0.052  Score=49.74  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=43.4

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH-HHHHH--------------HHHHHHhcCCCCCC---cHHHHHHHhcc--CCceEE
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR-YLLAT--------------KLISNLLKDENAIP---GIDLNFRRLSR--MKVLIF  199 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~-f~~~~--------------~ll~~l~~~~~~~~---~~~~l~~~l~~--~~~LlV  199 (439)
                      |.|+|++|+||||+|+.+...+.. ++...              ..+..+.....-.+   ....+.+.+..  ..--+|
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~i   82 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNFI   82 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcEE
Confidence            679999999999999998866432 11011              11222222222111   33555555543  123467


Q ss_pred             ecCC-CCHHHHHHHhcC
Q 037205          200 FYDV-TCFSQLESLMGS  215 (439)
Q Consensus       200 lDdv-~~~~~~~~l~~~  215 (439)
                      ||.+ .+.+|.+.|...
T Consensus        83 lDGfPR~~~Qa~~l~~~   99 (211)
T PRK14526         83 LDGFPRNINQAKALDKF   99 (211)
T ss_pred             EECCCCCHHHHHHHHHh
Confidence            7999 577777666543

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=95.31  E-value=0.051  Score=49.52  Aligned_cols=102  Identities=15%  Similarity=0.144  Sum_probs=57.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHHh--cc
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDEN---AIP----GIDLNFRRL--SR  193 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~l--~~  193 (439)
                      ..++++|.|+.|.||||+.+.+..-..-     |+        +.+.+...+.....   ..+    ....+...+  ..
T Consensus        28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~  107 (204)
T cd03282          28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYAD  107 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcC
Confidence            3478999999999999999987643221     22        22223222222211   111    112222222  35


Q ss_pred             CCceEEecCCC---CHHH----HHHHhcCCCCCCCCcEEEEEeCchHHHHhcC
Q 037205          194 MKVLIFFYDVT---CFSQ----LESLMGSLDWLTPVSRIILTTRNKQVLRNWG  239 (439)
Q Consensus       194 ~~~LlVlDdv~---~~~~----~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~  239 (439)
                      ++-|+++|+..   +..+    ...+...+.  ..|+.+|+||-+..++....
T Consensus       108 ~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~  158 (204)
T cd03282         108 GDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG  158 (204)
T ss_pred             CCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence            78899999972   2222    122222222  23789999999988877653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03263 guanyl_kin guanylate kinase

Probab=95.30  E-value=0.013  Score=51.98  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|+|+|++|+||||||+.++....
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCc
Confidence            4789999999999999999987643

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK13946 shikimate kinase; Provisional

Probab=95.29  E-value=0.014  Score=52.26  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=23.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .+.|.+.|++|+||||+|+.+.+.+..
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~   36 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLGL   36 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            357999999999999999999988754

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.27  E-value=0.018  Score=52.63  Aligned_cols=28  Identities=18%  Similarity=0.296  Sum_probs=23.4

Q ss_pred             CCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          133 ESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       133 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .....+.|.|+|++|+|||||+..+.+.
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3445788999999999999999988654

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=95.24  E-value=0.054  Score=54.89  Aligned_cols=22  Identities=50%  Similarity=0.602  Sum_probs=19.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -..++|+|++|.||||||+.+.
T Consensus       362 G~~lgIIGPSgSGKSTLaR~lv  383 (580)
T COG4618         362 GEALGIIGPSGSGKSTLARLLV  383 (580)
T ss_pred             CceEEEECCCCccHHHHHHHHH
Confidence            3579999999999999999875

>PRK10867 signal recognition particle protein; Provisional

Probab=95.24  E-value=0.054  Score=54.98  Aligned_cols=26  Identities=27%  Similarity=0.282  Sum_probs=21.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+|.++|.+|+||||+|..++..+
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~~l  124 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAKYL  124 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            36899999999999999887776544

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.23  E-value=0.025  Score=53.63  Aligned_cols=40  Identities=25%  Similarity=0.365  Sum_probs=30.4

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .++...+........+|||.|.||+|||||.-.+...+..
T Consensus        38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~   77 (323)
T COG1703          38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRE   77 (323)
T ss_pred             HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHH
Confidence            3445555445566789999999999999999887776643

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=95.23  E-value=0.035  Score=52.67  Aligned_cols=27  Identities=26%  Similarity=0.538  Sum_probs=23.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      -..++|.|.+|+||||||+.+++....
T Consensus        69 GQr~~If~~~G~GKTtLa~~i~~~i~~   95 (274)
T cd01133          69 GGKIGLFGGAGVGKTVLIMELINNIAK   95 (274)
T ss_pred             CCEEEEecCCCCChhHHHHHHHHHHHh
Confidence            356899999999999999999988763

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>PLN02200 adenylate kinase family protein

Probab=95.21  E-value=0.018  Score=53.65  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=23.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|.|.|++|+||||+|+.+...+.
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g   68 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFG   68 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356889999999999999999987654

>PRK14527 adenylate kinase; Provisional

Probab=95.20  E-value=0.018  Score=51.84  Aligned_cols=27  Identities=22%  Similarity=0.191  Sum_probs=23.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|.|.|++|.||||+|+.+++++.
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999987654

>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]

Probab=95.19  E-value=0.24  Score=54.97  Aligned_cols=177  Identities=18%  Similarity=0.192  Sum_probs=90.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH----------HH------HH---------HHHHHHHhcCCCCC-CcHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR----------YL------LA---------TKLISNLLKDENAI-PGIDLNFRR  190 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----------f~------~~---------~~ll~~l~~~~~~~-~~~~~l~~~  190 (439)
                      ..-+.|+|-+|.||||+...++-....          |+      ..         ...+.......... .......+.
T Consensus       222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~  301 (824)
T COG5635         222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQEL  301 (824)
T ss_pred             hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHHH
Confidence            347889999999999999887654432          21      00         11111111111111 122222578


Q ss_pred             hccCCceEEecCCCCHHH------HHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEcCCCCHHHHHHHHH-----
Q 037205          191 LSRMKVLIFFYDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFS-----  259 (439)
Q Consensus       191 l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~-----  259 (439)
                      ++..++|+++|.++....      ...+....++ -+.+.+|+|+|....-........+++..+.++.-.....     
T Consensus       302 l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~  380 (824)
T COG5635         302 LKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLD  380 (824)
T ss_pred             HhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHH
Confidence            889999999999875432      2222222221 2478999999966544333333444555554443332221     


Q ss_pred             ---HhhhcCCCCC-cch-HH---HHHHHHHHhCCCcHHHHHHHHhhc------CCCHHHHHHHHHHHhc
Q 037205          260 ---RHAFKRNHPD-VGY-EK---LSSNVMKYVQGVPLALKVLGCFLY------KREKEVWESAINKLQR  314 (439)
Q Consensus       260 ---~~a~~~~~~~-~~~-~~---~~~~i~~~~~GlPLal~~~g~~L~------~~~~~~w~~~l~~l~~  314 (439)
                         ...++..... ..+ ..   -..+-++.....|+.|.+.+..-.      ....+-++.+++.+-.
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~  449 (824)
T COG5635         381 AFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG  449 (824)
T ss_pred             HHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence               1111111111 000 01   122333444788999988875443      1346667777776544

>PRK00300 gmk guanylate kinase; Provisional

Probab=95.19  E-value=0.015  Score=52.86  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=22.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .-.+|+|+|++|+||||||+.++...
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34689999999999999999988765

>PRK03846 adenylylsulfate kinase; Provisional

Probab=95.19  E-value=0.021  Score=51.78  Aligned_cols=28  Identities=29%  Similarity=0.350  Sum_probs=23.9

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ....+|.|+|++|+||||||+.+...+.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~   49 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALH   49 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3567999999999999999999887653

>PRK04182 cytidylate kinase; Provisional

Probab=95.19  E-value=0.016  Score=51.16  Aligned_cols=25  Identities=40%  Similarity=0.480  Sum_probs=22.4

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +|+|.|++|+||||+|+.+++.+..
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~   26 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGL   26 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC
Confidence            6899999999999999999887654

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=95.18  E-value=0.016  Score=52.19  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=23.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..+|+|-||=|+||||||+.+.+++..
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~   30 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGF   30 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCC
Confidence            468999999999999999999988753

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=95.16  E-value=0.015  Score=54.69  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=21.2

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +|.++|++|+||||+|+.+...+.
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~   24 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLS   24 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999987764

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=95.16  E-value=0.018  Score=50.95  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...|.|+|+.|.||||+|+.+.+.+.
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~   29 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence            34689999999999999999987753

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=95.14  E-value=0.012  Score=52.75  Aligned_cols=99  Identities=10%  Similarity=0.068  Sum_probs=53.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHHhcc--CCc
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDEN---AIP----GIDLNFRRLSR--MKV  196 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~l~~--~~~  196 (439)
                      ++.|+|..|.||||+.+.+.-....     |+        ...+++..+.....   ..+    ....+...+..  ++-
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~   80 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS   80 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence            3679999999999999998733221     22        11111111111111   111    23334444544  889


Q ss_pred             eEEecCCCC---HHH----HHHHhcCCCCCCCCcEEEEEeCchHHHHhc
Q 037205          197 LIFFYDVTC---FSQ----LESLMGSLDWLTPVSRIILTTRNKQVLRNW  238 (439)
Q Consensus       197 LlVlDdv~~---~~~----~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~  238 (439)
                      |+++|+...   ...    ...+...+.. ..++.+|++|.+..+....
T Consensus        81 llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~  128 (185)
T smart00534       81 LVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA  128 (185)
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence            999999832   221    1222222211 1367899999988766543

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=95.13  E-value=0.017  Score=49.86  Aligned_cols=24  Identities=42%  Similarity=0.567  Sum_probs=21.2

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +|.|+|.+|+||||||+.+...+.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~   24 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLF   24 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999888764

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=95.12  E-value=0.023  Score=59.06  Aligned_cols=48  Identities=29%  Similarity=0.288  Sum_probs=36.8

Q ss_pred             cccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          116 LVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       116 ~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ++-=.+.++++..||..   +....+++.++|++|+||||.++.+++.+..
T Consensus        21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen   21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            44345567888888864   3334679999999999999999999988654

>PRK13948 shikimate kinase; Provisional

Probab=95.12  E-value=0.019  Score=51.27  Aligned_cols=28  Identities=21%  Similarity=0.207  Sum_probs=24.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..+.|.++|+.|+||||+++.+.+.+..
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~   36 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALML   36 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4578999999999999999999987654

>PHA02244 ATPase-like protein

Probab=95.12  E-value=0.041  Score=54.25  Aligned_cols=48  Identities=15%  Similarity=0.214  Sum_probs=32.4

Q ss_pred             CCCCcccccchHHH----HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          112 NKSQLVGVESRVEE----IESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       112 ~~~~~vGr~~~~~~----l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .+..++|.......    +.+++..   + .-|.|+|++|+|||+||+++++....
T Consensus        94 ~d~~~ig~sp~~~~~~~ri~r~l~~---~-~PVLL~GppGtGKTtLA~aLA~~lg~  145 (383)
T PHA02244         94 IDTTKIASNPTFHYETADIAKIVNA---N-IPVFLKGGAGSGKNHIAEQIAEALDL  145 (383)
T ss_pred             CCCcccCCCHHHHHHHHHHHHHHhc---C-CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34557776655543    3333331   2 24678999999999999999987654

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.09  E-value=0.032  Score=54.62  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=27.9

Q ss_pred             HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++.+.+........+|+|.|.+|+|||||+..+...+.
T Consensus        44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~   81 (332)
T PRK09435         44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI   81 (332)
T ss_pred             HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44444432234678999999999999999998766554

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=95.07  E-value=0.017  Score=51.79  Aligned_cols=23  Identities=30%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             EEEecCCCChhHHHHHHHHhHHh
Q 037205          140 LGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      |.|.|++|+||||+|+.++..+.
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~   24 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG   24 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999988754

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR00959 ffh signal recognition particle protein

Probab=95.06  E-value=0.086  Score=53.47  Aligned_cols=27  Identities=22%  Similarity=0.186  Sum_probs=22.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...++.++|.+|+||||+|..++..+.
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~  124 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLK  124 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            367999999999999999888876643

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK14532 adenylate kinase; Provisional

Probab=95.06  E-value=0.017  Score=51.70  Aligned_cols=24  Identities=25%  Similarity=0.291  Sum_probs=21.0

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      |.|.|++|+||||+|+.++.....
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~g~   26 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEERGM   26 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC
Confidence            678999999999999999877643

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=95.04  E-value=0.02  Score=50.24  Aligned_cols=24  Identities=42%  Similarity=0.533  Sum_probs=21.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +|+|.|++|+||||+|+.+.+.+.
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg   25 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLS   25 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            689999999999999999987654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=95.03  E-value=0.029  Score=53.60  Aligned_cols=24  Identities=38%  Similarity=0.679  Sum_probs=20.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ++|+|.|=||+||||+|..+..-+
T Consensus         2 ~~iav~~KGGVGKTT~~~nLA~~L   25 (274)
T PRK13235          2 RKVAIYGKGGIGKSTTTQNTVAGL   25 (274)
T ss_pred             CEEEEeCCCCccHHHHHHHHHHHH
Confidence            478888999999999999877654

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=95.03  E-value=0.033  Score=46.20  Aligned_cols=48  Identities=23%  Similarity=0.358  Sum_probs=33.5

Q ss_pred             Ccccccc----hHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          115 QLVGVES----RVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       115 ~~vGr~~----~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .++|..-    .++.|...+.. .+++.-|+..+|.+|+|||.+++.+++.+.
T Consensus        26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly   78 (127)
T PF06309_consen   26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY   78 (127)
T ss_pred             HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence            3555543    34444444543 345678999999999999999999888753

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=95.02  E-value=0.025  Score=54.26  Aligned_cols=26  Identities=35%  Similarity=0.341  Sum_probs=21.7

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....+|||.|..|+||||+|+.+..-
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~l   85 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQAL   85 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999865443

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR00416 sms DNA repair protein RadA

Probab=95.01  E-value=0.063  Score=55.07  Aligned_cols=42  Identities=24%  Similarity=0.192  Sum_probs=31.6

Q ss_pred             chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          121 SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       121 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .-+.++.++|..+-..-.++.|.|.+|+|||||+.++.....
T Consensus        78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a  119 (454)
T TIGR00416        78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA  119 (454)
T ss_pred             cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            345566666654444567899999999999999999876654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK14531 adenylate kinase; Provisional

Probab=94.99  E-value=0.022  Score=50.88  Aligned_cols=24  Identities=29%  Similarity=0.188  Sum_probs=21.4

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|.|+|++|.||||+|+.+...+.
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g   27 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHG   27 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999988764

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=94.99  E-value=0.028  Score=56.33  Aligned_cols=50  Identities=22%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             CCcccccchHHHHHhhhcc---------C---CCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          114 SQLVGVESRVEEIESLLSV---------E---SKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..++|.+..++.+...+..         .   ......|.++|++|+|||+||+.+...+..
T Consensus        15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~   76 (443)
T PRK05201         15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA   76 (443)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5588888888877766632         0   011367899999999999999999877543

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=94.98  E-value=0.017  Score=49.00  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.3

Q ss_pred             EEEEecCCCChhHHHHHHHHhHH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .|+|+|++|+|||||++.+....
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcC
Confidence            37899999999999999998764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=94.98  E-value=0.092  Score=51.98  Aligned_cols=83  Identities=18%  Similarity=0.245  Sum_probs=51.2

Q ss_pred             chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH----HHHHH-HH--HHhcCCCCCC-----c
Q 037205          121 SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL----LATKL-IS--NLLKDENAIP-----G  183 (439)
Q Consensus       121 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~----~~~~l-l~--~l~~~~~~~~-----~  183 (439)
                      ..+.++.+.|..+--.-.+|.|-|-||||||||..+++.++..     |+    ...++ ++  .+.-...++.     .
T Consensus        77 tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~  156 (456)
T COG1066          77 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETN  156 (456)
T ss_pred             CChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcC
Confidence            3455666666533233568999999999999999999998875     44    11111 11  1111111221     4


Q ss_pred             HHHHHHHhc-cCCceEEecCC
Q 037205          184 IDLNFRRLS-RMKVLIFFYDV  203 (439)
Q Consensus       184 ~~~l~~~l~-~~~~LlVlDdv  203 (439)
                      .+.+.+.+. .++-|+|+|-+
T Consensus       157 ~e~I~~~l~~~~p~lvVIDSI  177 (456)
T COG1066         157 LEDIIAELEQEKPDLVVIDSI  177 (456)
T ss_pred             HHHHHHHHHhcCCCEEEEecc
Confidence            555555555 47789999988

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=94.98  E-value=0.021  Score=50.22  Aligned_cols=25  Identities=32%  Similarity=0.361  Sum_probs=22.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|.|+|++|+||||+|+.+.+.+..
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg~   28 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALGY   28 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5788999999999999999987654

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=94.94  E-value=0.044  Score=54.19  Aligned_cols=95  Identities=13%  Similarity=0.099  Sum_probs=57.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH------HHH--HHHHH-H---H-HhcCCC---CCCcHHHHHHHhccCCceEEe
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR------YLL--ATKLI-S---N-LLKDEN---AIPGIDLNFRRLSRMKVLIFF  200 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~--~~~ll-~---~-l~~~~~---~~~~~~~l~~~l~~~~~LlVl  200 (439)
                      ...|.|.|+.|.||||++..+.+.+..      +.+  ..++. .   . +.....   ..+..+.++..|+..+=.|++
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v  201 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI  201 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence            467999999999999999988765432      100  00000 0   0 000011   112456678888899999999


Q ss_pred             cCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHH
Q 037205          201 YDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQV  234 (439)
Q Consensus       201 Ddv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v  234 (439)
                      |++.+.+.........   ..|..++.|.-....
T Consensus       202 gEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~  232 (343)
T TIGR01420       202 GEMRDLETVELALTAA---ETGHLVFGTLHTNSA  232 (343)
T ss_pred             eCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence            9999887765533321   245556666654433

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=94.94  E-value=0.022  Score=46.51  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEecCCCChhHHHHHHHHhHH
Q 037205          140 LGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      |.|+|.+|+|||||.+.+....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            6899999999999999988665

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK15453 phosphoribulokinase; Provisional

Probab=94.93  E-value=0.027  Score=53.50  Aligned_cols=28  Identities=25%  Similarity=0.272  Sum_probs=23.8

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ....+|+|.|.+|.||||+|+.+.+.+.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~   30 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR   30 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4568999999999999999998876543

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=94.92  E-value=0.021  Score=49.87  Aligned_cols=21  Identities=33%  Similarity=0.298  Sum_probs=17.7

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |+|+|.+|+|||||++.+...
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            789999999999999999877

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=94.92  E-value=0.02  Score=51.27  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..+.|+|++|+|||||++.++...
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            368899999999999999987654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=94.89  E-value=0.027  Score=51.41  Aligned_cols=28  Identities=25%  Similarity=0.389  Sum_probs=24.4

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++++|+++|..|+|||||...+.+..
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~   46 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL   46 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999999877653

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=94.85  E-value=0.031  Score=58.20  Aligned_cols=29  Identities=21%  Similarity=0.453  Sum_probs=25.1

Q ss_pred             CCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          133 ESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       133 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++..+|+|.|.+|.||||||+.+....
T Consensus        61 ~~~~riIIGIaGpSGSGKTTLAk~LaglL   89 (656)
T PLN02318         61 KNDGIILVGVAGPSGAGKTVFTEKVLNFM   89 (656)
T ss_pred             cCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence            44568899999999999999999987664

>PRK11823 DNA repair protein RadA; Provisional

Probab=94.84  E-value=0.084  Score=54.10  Aligned_cols=40  Identities=23%  Similarity=0.251  Sum_probs=30.5

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.++.+.|..+-..-.++.|.|.+|+|||||+.+++....
T Consensus        66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a  105 (446)
T PRK11823         66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA  105 (446)
T ss_pred             cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4556666654434456899999999999999999987764

>PTZ00088 adenylate kinase 1; Provisional

Probab=94.84  E-value=0.023  Score=52.74  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.6

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      |.|.|++|+||||+|+.+.+.+..
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~~g~   32 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKKENL   32 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            889999999999999999888653

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=94.83  E-value=0.038  Score=58.26  Aligned_cols=48  Identities=25%  Similarity=0.351  Sum_probs=34.3

Q ss_pred             CcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          115 QLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       115 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+-|-+..+.|.+........-.+|.|+|++|+||||+|+.++..+.
T Consensus       370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~  417 (568)
T PRK05537        370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLM  417 (568)
T ss_pred             hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence            345555555555555544344456889999999999999999988765

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=94.82  E-value=0.025  Score=51.34  Aligned_cols=99  Identities=13%  Similarity=0.087  Sum_probs=53.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHHh--ccCC
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDEN---AIP----GIDLNFRRL--SRMK  195 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~l--~~~~  195 (439)
                      .+++|+|..|.|||||.+.+......     |+        ...+++..+.....   ...    ....+...+  ...+
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~  109 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR  109 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence            68999999999999999998843221     22        00111111111100   011    122222222  2578


Q ss_pred             ceEEecCCCC---HH---HH-HHHhcCCCCCCCCcEEEEEeCchHHHHhc
Q 037205          196 VLIFFYDVTC---FS---QL-ESLMGSLDWLTPVSRIILTTRNKQVLRNW  238 (439)
Q Consensus       196 ~LlVlDdv~~---~~---~~-~~l~~~~~~~~~gs~IiiTTR~~~v~~~~  238 (439)
                      -++++|+...   ..   .+ ..+...+.  ..++.+|++|.+..+...+
T Consensus       110 ~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~~~~  157 (202)
T cd03243         110 SLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELADLP  157 (202)
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHHHHh
Confidence            9999999832   21   11 22232222  2367799999988776654

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=94.81  E-value=0.028  Score=43.68  Aligned_cols=24  Identities=33%  Similarity=0.538  Sum_probs=20.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++.+.|.+|+||||++..+...+.
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~   24 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALA   24 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            367899999999999998776653

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=94.81  E-value=0.027  Score=53.56  Aligned_cols=26  Identities=23%  Similarity=0.188  Sum_probs=20.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +.|.|+|.||+||||+|+++...+..
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~   27 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEE   27 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence            57899999999999999999887665

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=94.80  E-value=0.026  Score=49.08  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=21.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +++|+|+.|+|||||+..+...+.
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~   24 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALK   24 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999887754

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=94.78  E-value=0.036  Score=50.14  Aligned_cols=43  Identities=30%  Similarity=0.286  Sum_probs=30.2

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+++|.+..+..+.-...    +..-+.++|.+|+|||+||+.+-.-
T Consensus         3 ~dI~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~l   45 (206)
T PF01078_consen    3 SDIVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPSL   45 (206)
T ss_dssp             CCSSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHHC
T ss_pred             hhhcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHHh
Confidence            467888877766665544    2346889999999999999987643

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=94.78  E-value=0.023  Score=52.25  Aligned_cols=23  Identities=43%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      --++||+|.+|+|||||++.+.-
T Consensus        33 Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          33 GETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhc
Confidence            45799999999999999998763

>PRK14737 gmk guanylate kinase; Provisional

Probab=94.71  E-value=0.028  Score=50.42  Aligned_cols=27  Identities=26%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++|.|+|++|+|||||++.+.....
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~   29 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHP   29 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence            357899999999999999999987653

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=94.71  E-value=0.026  Score=54.63  Aligned_cols=24  Identities=33%  Similarity=0.278  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+|.+.|.+|+||||+|+.+..++
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHC
Confidence            578889999999999999998887

>PLN02459 probable adenylate kinase

Probab=94.70  E-value=0.051  Score=51.17  Aligned_cols=76  Identities=20%  Similarity=0.226  Sum_probs=45.7

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH-HHHHHHH--------------HHHHhcCCCCCC---cHHHHHHHhcc----CCc
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR-YLLATKL--------------ISNLLKDENAIP---GIDLNFRRLSR----MKV  196 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~l--------------l~~l~~~~~~~~---~~~~l~~~l~~----~~~  196 (439)
                      .|.|.|+||+||||+|+.+...+.. ++....+              +........-.+   ....+.+.+..    ..-
T Consensus        31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~~  110 (261)
T PLN02459         31 NWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGES  110 (261)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCc
Confidence            3677899999999999999887653 2211111              222222222122   44556666643    346


Q ss_pred             eEEecCC-CCHHHHHHHhc
Q 037205          197 LIFFYDV-TCFSQLESLMG  214 (439)
Q Consensus       197 LlVlDdv-~~~~~~~~l~~  214 (439)
                      -+|||.+ .+..|.+.|-.
T Consensus       111 g~iLDGFPRt~~Qa~~Le~  129 (261)
T PLN02459        111 GFILDGFPRTVRQAEILEG  129 (261)
T ss_pred             eEEEeCCCCCHHHHHHHHh
Confidence            7899999 56777666643

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=94.69  E-value=0.027  Score=51.02  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .+|||+|+.|+||||.|+.+.+
T Consensus         3 ~iIglTG~igsGKStva~~~~~   24 (201)
T COG0237           3 LIIGLTGGIGSGKSTVAKILAE   24 (201)
T ss_pred             eEEEEecCCCCCHHHHHHHHHH
Confidence            5899999999999999998776

>PRK01184 hypothetical protein; Provisional

Probab=94.69  E-value=0.026  Score=50.37  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=18.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+|+|+|++|+||||+|+ ++..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~   23 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IARE   23 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHH
Confidence            479999999999999987 4444

>PLN02348 phosphoribulokinase

Probab=94.69  E-value=0.033  Score=55.28  Aligned_cols=28  Identities=21%  Similarity=0.309  Sum_probs=24.5

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+...+|+|.|.+|.||||+|+.+.+.+
T Consensus        46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~L   73 (395)
T PLN02348         46 DDGTVVIGLAADSGCGKSTFMRRLTSVF   73 (395)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999987765

>TIGR00750 lao LAO/AO transport system ATPase

Probab=94.68  E-value=0.052  Score=52.64  Aligned_cols=37  Identities=22%  Similarity=0.242  Sum_probs=27.4

Q ss_pred             HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.+-+........+|+|.|.+|+|||||+..+.....
T Consensus        23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~   59 (300)
T TIGR00750        23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR   59 (300)
T ss_pred             HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3333433344678999999999999999998776543

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF13245 AAA_19: Part of AAA domain

Probab=94.67  E-value=0.035  Score=41.88  Aligned_cols=24  Identities=29%  Similarity=0.261  Sum_probs=17.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+++.|.|.+|.|||+++......
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~   33 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAE   33 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456778999999999666554433

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=0.3  Score=47.73  Aligned_cols=50  Identities=20%  Similarity=0.349  Sum_probs=35.6

Q ss_pred             CCcccccchHHHHHhhhccC------------CCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          114 SQLVGVESRVEEIESLLSVE------------SKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .++-|.+..++++.+..-..            -...+-|.++|++|.|||-||++++.+...
T Consensus        92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga  153 (386)
T KOG0737|consen   92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA  153 (386)
T ss_pred             hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC
Confidence            45566676666666643210            123567889999999999999999988654

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=94.66  E-value=0.029  Score=52.40  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=24.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ...+|.++||+|.||||..+.++..+..
T Consensus        18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~   45 (366)
T KOG1532|consen   18 RPVIILVVGMAGSGKTTFMQRLNSHLHA   45 (366)
T ss_pred             CCcEEEEEecCCCCchhHHHHHHHHHhh
Confidence            4567888999999999999999888765

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=94.65  E-value=0.036  Score=56.02  Aligned_cols=50  Identities=16%  Similarity=0.152  Sum_probs=35.0

Q ss_pred             CCcccccchHHHHHhhhc-------cC-C------CCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          114 SQLVGVESRVEEIESLLS-------VE-S------KDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~-------~~-~------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..+||.+..++.+...+.       .. .      -.-+.+.++|++|+|||+||+.++.....
T Consensus        71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~  134 (412)
T PRK05342         71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV  134 (412)
T ss_pred             hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            457888887777754331       00 0      01356889999999999999999876543

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=94.62  E-value=0.037  Score=50.46  Aligned_cols=32  Identities=25%  Similarity=0.164  Sum_probs=24.6

Q ss_pred             hccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          130 LSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       130 L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      |..+-..-.++.|+|.+|+|||++|.+++...
T Consensus         5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~   36 (209)
T TIGR02237         5 LGGGVERGTITQIYGPPGSGKTNICMILAVNA   36 (209)
T ss_pred             hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            33333446799999999999999999877554

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=94.62  E-value=0.033  Score=54.88  Aligned_cols=50  Identities=24%  Similarity=0.200  Sum_probs=39.2

Q ss_pred             CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+.+||-+..+..|...+.  +....-|.|.|..|.||||+|+.+++-..
T Consensus        14 ~pf~~ivGq~~~k~al~~~~~--~p~~~~vli~G~~GtGKs~~ar~~~~~l~   63 (350)
T CHL00081         14 FPFTAIVGQEEMKLALILNVI--DPKIGGVMIMGDRGTGKSTTIRALVDLLP   63 (350)
T ss_pred             CCHHHHhChHHHHHHHHHhcc--CCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence            345779999987777776655  34556677999999999999999977654

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=94.62  E-value=0.045  Score=52.08  Aligned_cols=24  Identities=33%  Similarity=0.605  Sum_probs=20.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ++|+|.|=||+||||++..++..+
T Consensus         3 ~iIav~~KGGVGKTT~~~nLA~~l   26 (270)
T PRK13185          3 LVLAVYGKGGIGKSTTSSNLSAAF   26 (270)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            678888999999999999877654

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=94.62  E-value=0.049  Score=50.29  Aligned_cols=37  Identities=24%  Similarity=0.199  Sum_probs=27.5

Q ss_pred             HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .|.++|..+-..-.++.|+|.+|+|||++|.+++...
T Consensus        11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~   47 (225)
T PRK09361         11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEA   47 (225)
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3445554333446799999999999999999887654

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=94.61  E-value=0.066  Score=49.47  Aligned_cols=101  Identities=12%  Similarity=0.026  Sum_probs=54.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHHh--cc
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDEN---AIP----GIDLNFRRL--SR  193 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~l--~~  193 (439)
                      +.+++.|+|+.|.||||+.+.+..-.--     |+        ....++..+.....   ..+    ....+...+  ..
T Consensus        29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~  108 (222)
T cd03285          29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKSAT  108 (222)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHHHHHHhCC
Confidence            4678999999999999999987743211     22        11222222111111   111    122233334  35


Q ss_pred             CCceEEecCC---CCHHHH----HHHhcCCCCCCCCcEEEEEeCchHHHHh
Q 037205          194 MKVLIFFYDV---TCFSQL----ESLMGSLDWLTPVSRIILTTRNKQVLRN  237 (439)
Q Consensus       194 ~~~LlVlDdv---~~~~~~----~~l~~~~~~~~~gs~IiiTTR~~~v~~~  237 (439)
                      .+-|++||..   .+..+-    ..+...+.. ..|+.+|+||-...+...
T Consensus       109 ~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~  158 (222)
T cd03285         109 ENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTAL  158 (222)
T ss_pred             CCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHH
Confidence            7889999999   332221    111112111 246789999987666554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=94.60  E-value=0.034  Score=53.34  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=22.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++++|+|++|+||||++..++..+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35699999999999999999877654

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=94.58  E-value=0.027  Score=48.50  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=21.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++.|+|.+|+||||++..+.....
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~   24 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIA   24 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHH
Confidence            367999999999999999987764

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK08356 hypothetical protein; Provisional

Probab=94.58  E-value=0.032  Score=50.36  Aligned_cols=22  Identities=32%  Similarity=0.312  Sum_probs=19.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      ..+|+|+|++|+||||+|+.+.
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~   26 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE   26 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999984

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=94.56  E-value=0.049  Score=52.82  Aligned_cols=53  Identities=25%  Similarity=0.207  Sum_probs=40.2

Q ss_pred             CCCCCcccccchHH---HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          111 DNKSQLVGVESRVE---EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       111 ~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .....+||.....+   -+.++...+.-.-+.|.|.|++|.|||+||..+.+.+..
T Consensus        36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~   91 (450)
T COG1224          36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGE   91 (450)
T ss_pred             EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            45678999765544   345555555445688999999999999999999988764

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=94.56  E-value=0.036  Score=47.97  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=21.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++.|+|.+|+||||+.+.+-...
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l   28 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL   28 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH
Confidence            5789999999999999998776665

>PRK06761 hypothetical protein; Provisional

Probab=94.52  E-value=0.03  Score=53.45  Aligned_cols=25  Identities=36%  Similarity=0.413  Sum_probs=22.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|.|.|++|+||||+|+.+++.+.
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~   28 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILS   28 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5799999999999999999988764

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.52  E-value=0.079  Score=53.26  Aligned_cols=25  Identities=28%  Similarity=0.116  Sum_probs=21.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++.++|++|+||||++..++...
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999988654

>TIGR01351 adk adenylate kinases

Probab=94.51  E-value=0.029  Score=51.33  Aligned_cols=23  Identities=35%  Similarity=0.385  Sum_probs=20.5

Q ss_pred             EEEecCCCChhHHHHHHHHhHHh
Q 037205          140 LGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      |.|.|++|+||||+|+.+...+.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g   24 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYG   24 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            67999999999999999987654

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=94.50  E-value=0.026  Score=50.19  Aligned_cols=21  Identities=33%  Similarity=0.465  Sum_probs=19.0

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      +|+|+|++|+||||+|+.+.+
T Consensus         1 ii~itG~~gsGKst~~~~l~~   21 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE   21 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998765

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK00279 adk adenylate kinase; Reviewed

Probab=94.50  E-value=0.031  Score=51.35  Aligned_cols=25  Identities=32%  Similarity=0.290  Sum_probs=21.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|.|.|++|+||||+|+.++..+..
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~   26 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGI   26 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3789999999999999999877653

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=94.49  E-value=0.039  Score=48.64  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=20.9

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++.++|++|+||||++..++..+.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~   25 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLK   25 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            678999999999999998887654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=94.49  E-value=0.048  Score=53.24  Aligned_cols=51  Identities=18%  Similarity=0.276  Sum_probs=42.9

Q ss_pred             CCCcccccchHHHHHhhhccC----CCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          113 KSQLVGVESRVEEIESLLSVE----SKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ...|+|.+..++++.+.|...    ...-+++.+.|+.|.||||||..+-+-+..
T Consensus        60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~  114 (358)
T PF08298_consen   60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE  114 (358)
T ss_pred             cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence            357999999999999988752    234689999999999999999988777665

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=94.49  E-value=0.035  Score=49.81  Aligned_cols=24  Identities=29%  Similarity=0.435  Sum_probs=21.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +|.|.|+.|+||||+++.+.+.+.
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~   25 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLE   25 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999987764

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=94.47  E-value=0.032  Score=49.59  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+++|+|.+|.|||||++.++....
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4789999999999999999887653

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=94.46  E-value=0.028  Score=53.42  Aligned_cols=95  Identities=21%  Similarity=0.362  Sum_probs=55.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCCCcHHHHHHHh----ccCCceEEecCCCCH---
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAIPGIDLNFRRL----SRMKVLIFFYDVTCF---  206 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~~~~~~l~~~l----~~~~~LlVlDdv~~~---  206 (439)
                      +..++|||++|.|||-||+.|+..... |+  ....+.+.-.++     ....+++..    ...++.|.+|+++-.   
T Consensus       166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE-----saRlIRemf~yA~~~~pciifmdeiDAigGR  240 (388)
T KOG0651|consen  166 PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE-----SARLIRDMFRYAREVIPCIIFMDEIDAIGGR  240 (388)
T ss_pred             CceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc-----HHHHHHHHHHHHhhhCceEEeehhhhhhccE
Confidence            578999999999999999999988776 43  222222211111     122233322    345688899998421   


Q ss_pred             ----------H---HHHHHhcCCCCC--CCCcEEEEEeCchHHHH
Q 037205          207 ----------S---QLESLMGSLDWL--TPVSRIILTTRNKQVLR  236 (439)
Q Consensus       207 ----------~---~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~  236 (439)
                                +   .+-.|+.....+  -...++|+||..+..+.
T Consensus       241 r~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLd  285 (388)
T KOG0651|consen  241 RFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLD  285 (388)
T ss_pred             EeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccc
Confidence                      1   122333333322  23467899888776543

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=94.46  E-value=0.047  Score=52.19  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=25.9

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..+..+|.|.|.+|.|||||+..+.+.+..
T Consensus       101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~  130 (290)
T PRK10463        101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKD  130 (290)
T ss_pred             hcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            356899999999999999999998887643

>PRK13695 putative NTPase; Provisional

Probab=94.46  E-value=0.035  Score=49.05  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=21.2

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|+|+|.+|+|||||++.+++.+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~   25 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLK   25 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999887765

>PRK02496 adk adenylate kinase; Provisional

Probab=94.46  E-value=0.033  Score=49.73  Aligned_cols=24  Identities=29%  Similarity=0.273  Sum_probs=20.9

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+.|.|++|.||||+|+.+...+.
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~   26 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLH   26 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999987753

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=94.43  E-value=0.043  Score=51.97  Aligned_cols=26  Identities=15%  Similarity=0.194  Sum_probs=21.9

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-.++.|.|.+|+|||++|.+++..
T Consensus        34 p~gs~~lI~G~pGtGKT~l~~qf~~~   59 (259)
T TIGR03878        34 PAYSVINITGVSDTGKSLMVEQFAVT   59 (259)
T ss_pred             ECCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            34578999999999999999987654

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=94.42  E-value=0.17  Score=55.16  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -..++|+|..|.|||||++.+..
T Consensus       491 G~~iaIvG~sGsGKSTLlklL~g  513 (694)
T TIGR03375       491 GEKVAIIGRIGSGKSTLLKLLLG  513 (694)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999998763

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK14528 adenylate kinase; Provisional

Probab=94.42  E-value=0.037  Score=49.64  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=21.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.|.|.|++|+||||+|+.+...+.
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~   26 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLS   26 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3578999999999999999987653

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=94.41  E-value=0.044  Score=52.04  Aligned_cols=90  Identities=16%  Similarity=0.115  Sum_probs=53.7

Q ss_pred             hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HH-H---HHHHHHHHh----cCCCCCCcHHHHHH
Q 037205          122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----YL-L---ATKLISNLL----KDENAIPGIDLNFR  189 (439)
Q Consensus       122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-~---~~~ll~~l~----~~~~~~~~~~~l~~  189 (439)
                      .++.+..++.   ....+|.|.|..|.||||++..+.+.+..    .+ +   .+-.+..+.    .........+.++.
T Consensus        68 ~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~  144 (264)
T cd01129          68 NLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRA  144 (264)
T ss_pred             HHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHH
Confidence            3344444443   23457999999999999999987665532    00 0   000000000    00001224567788


Q ss_pred             HhccCCceEEecCCCCHHHHHHHhc
Q 037205          190 RLSRMKVLIFFYDVTCFSQLESLMG  214 (439)
Q Consensus       190 ~l~~~~~LlVlDdv~~~~~~~~l~~  214 (439)
                      .|+..+=.|+++++.+.+....+..
T Consensus       145 ~lR~~PD~i~vgEiR~~e~a~~~~~  169 (264)
T cd01129         145 ILRQDPDIIMVGEIRDAETAEIAVQ  169 (264)
T ss_pred             HhccCCCEEEeccCCCHHHHHHHHH
Confidence            8888899999999998886554443

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=94.41  E-value=0.037  Score=44.66  Aligned_cols=22  Identities=36%  Similarity=0.370  Sum_probs=19.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -..++|.|++|.|||||++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4678999999999999999743

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=94.39  E-value=0.057  Score=52.23  Aligned_cols=26  Identities=31%  Similarity=0.673  Sum_probs=21.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +.++|+|.|-||+||||++..+...+
T Consensus         3 ~~~~iai~~KGGvGKTt~~~nLa~~l   28 (295)
T PRK13234          3 KLRQIAFYGKGGIGKSTTSQNTLAAL   28 (295)
T ss_pred             cceEEEEECCCCccHHHHHHHHHHHH
Confidence            35788888999999999998766554

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=94.38  E-value=0.059  Score=57.39  Aligned_cols=24  Identities=25%  Similarity=0.238  Sum_probs=20.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -..++|+|..|.|||||++.+...
T Consensus       361 G~~v~IvG~sGsGKSTLl~lL~gl  384 (588)
T PRK13657        361 GQTVAIVGPTGAGKSTLINLLQRV  384 (588)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999987643

>PRK12338 hypothetical protein; Provisional

Probab=94.37  E-value=0.037  Score=53.65  Aligned_cols=27  Identities=33%  Similarity=0.404  Sum_probs=23.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..+|.|.|.+|+||||+|+.++.++..
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l~~   30 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTLNI   30 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHCCC
Confidence            468999999999999999999988653

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=94.33  E-value=0.049  Score=47.50  Aligned_cols=25  Identities=32%  Similarity=0.493  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++++|+|..|+|||||+..+...+.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999887654

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=94.33  E-value=0.044  Score=53.90  Aligned_cols=46  Identities=28%  Similarity=0.224  Sum_probs=36.2

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..++|.+..+..+...+..+    +-+.+.|.+|+|||+||+.++..+..
T Consensus        24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~   69 (329)
T COG0714          24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGL   69 (329)
T ss_pred             CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCC
Confidence            34889888877777666532    35789999999999999999888764

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=94.30  E-value=0.059  Score=46.90  Aligned_cols=36  Identities=25%  Similarity=0.462  Sum_probs=29.1

Q ss_pred             chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          121 SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       121 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..+++|.+.|.    + +++.++|..|+|||||...+....
T Consensus        24 ~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   24 EGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             TTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence            45777887775    3 688999999999999999877653

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=94.29  E-value=0.047  Score=49.07  Aligned_cols=25  Identities=36%  Similarity=0.327  Sum_probs=22.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..|.|.|..|+||||+|+.+.+.+.
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999887764

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.29  E-value=0.2  Score=51.79  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..+|+|+|.+|+||||++..++..+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~l  374 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRF  374 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999999998877654

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=94.29  E-value=0.043  Score=52.31  Aligned_cols=25  Identities=36%  Similarity=0.497  Sum_probs=22.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|+|+|.+|+|||||+..+...+.
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~   26 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLS   26 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999877654

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=94.27  E-value=0.05  Score=49.91  Aligned_cols=36  Identities=33%  Similarity=0.278  Sum_probs=22.5

Q ss_pred             hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..+.+...+..    ..+..|+|+||.||||++..+...+
T Consensus         6 Q~~Ai~~~~~~----~~~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen    6 QREAIQSALSS----NGITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             HHHHHHHHCTS----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC----CCCEEEECCCCCChHHHHHHHHHHh
Confidence            34455555542    1278899999999998777655443

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=94.26  E-value=0.053  Score=54.68  Aligned_cols=50  Identities=16%  Similarity=0.236  Sum_probs=35.3

Q ss_pred             CCCcccccchHHHHHhhh-------cc---CC--C----CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          113 KSQLVGVESRVEEIESLL-------SV---ES--K----DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L-------~~---~~--~----~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...++|.+..++.+...+       ..   ..  +    ....|.++|++|+|||+||+.++..+.
T Consensus        76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~  141 (413)
T TIGR00382        76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN  141 (413)
T ss_pred             cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence            355788888887775443       11   01  1    125789999999999999999987654

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.26  E-value=0.037  Score=58.28  Aligned_cols=28  Identities=29%  Similarity=0.319  Sum_probs=24.1

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..-++..++|++|+||||||..++++..
T Consensus       324 P~kKilLL~GppGlGKTTLAHViAkqaG  351 (877)
T KOG1969|consen  324 PPKKILLLCGPPGLGKTTLAHVIAKQAG  351 (877)
T ss_pred             CccceEEeecCCCCChhHHHHHHHHhcC
Confidence            4468999999999999999999887753

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=94.23  E-value=0.044  Score=48.45  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.++.|.|++|+|||||++.++++.
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3578899999999999999999876

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=94.22  E-value=0.091  Score=56.71  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=20.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -..|+|+|..|+|||||++.+..-
T Consensus       499 Ge~vaIvG~SGsGKSTL~KLL~gl  522 (709)
T COG2274         499 GEKVAIVGRSGSGKSTLLKLLLGL  522 (709)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            357999999999999999987643

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=94.20  E-value=0.053  Score=50.32  Aligned_cols=35  Identities=23%  Similarity=0.211  Sum_probs=26.0

Q ss_pred             HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |..+|..+-..-.++.|+|.+|+|||+||.+++..
T Consensus         8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~   42 (235)
T cd01123           8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVT   42 (235)
T ss_pred             hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44445433344678999999999999999987643

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.18  E-value=0.56  Score=50.07  Aligned_cols=171  Identities=16%  Similarity=0.176  Sum_probs=88.3

Q ss_pred             CCcccccchHHHHHhhhccCC-------CCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCCCc
Q 037205          114 SQLVGVESRVEEIESLLSVES-------KDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAIPG  183 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~~~  183 (439)
                      ....+++..+..+.+.|....       .-..++.++|.+|+||||+++.++..+.. ++  -..++..+..+.. +...
T Consensus       401 ~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~-etkl  479 (953)
T KOG0736|consen  401 LSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHT-ETKL  479 (953)
T ss_pred             CCCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchh-HHHH
Confidence            445677777777777776421       23578999999999999999999988764 11  1111111100000 0001


Q ss_pred             HHHHHHHhccCCceEEecCCC-------CHHH------HHHHhc-C-CCCCCCCcEEEEEeC-chHHHHhcC--CCeEEE
Q 037205          184 IDLNFRRLSRMKVLIFFYDVT-------CFSQ------LESLMG-S-LDWLTPVSRIILTTR-NKQVLRNWG--VSKIYE  245 (439)
Q Consensus       184 ~~~l~~~l~~~~~LlVlDdv~-------~~~~------~~~l~~-~-~~~~~~gs~IiiTTR-~~~v~~~~~--~~~~~~  245 (439)
                      .....+.-+-.+..|.|-|++       ..+.      ++.++. . +....++.-++.||- .+++.....  ..+.++
T Consensus       480 ~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~  559 (953)
T KOG0736|consen  480 QAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIE  559 (953)
T ss_pred             HHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhcc
Confidence            111222222345555554442       1111      222322 1 111223333444443 333322221  346788


Q ss_pred             cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH
Q 037205          246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL  288 (439)
Q Consensus       246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL  288 (439)
                      ++.|++++=.++|+.+.-...   -+.....+.++.+|.|+-+
T Consensus       560 ~~~lse~qRl~iLq~y~~~~~---~n~~v~~k~~a~~t~gfs~  599 (953)
T KOG0736|consen  560 VPALSEEQRLEILQWYLNHLP---LNQDVNLKQLARKTSGFSF  599 (953)
T ss_pred             CCCCCHHHHHHHHHHHHhccc---cchHHHHHHHHHhcCCCCH
Confidence            999999999999998873322   1223335566677766533

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.17  E-value=0.12  Score=47.32  Aligned_cols=62  Identities=10%  Similarity=0.058  Sum_probs=38.7

Q ss_pred             HHHHHHHhccCCceEEecCCCCHHHHHHH---hcCCC-CCCCCcEEEEEeCchHHHHhcCCCeEEE
Q 037205          184 IDLNFRRLSRMKVLIFFYDVTCFSQLESL---MGSLD-WLTPVSRIILTTRNKQVLRNWGVSKIYE  245 (439)
Q Consensus       184 ~~~l~~~l~~~~~LlVlDdv~~~~~~~~l---~~~~~-~~~~gs~IiiTTR~~~v~~~~~~~~~~~  245 (439)
                      ...+.+.+--++-|.|||..++--+++++   ..... -..+|+-+++.|....++.....+.++-
T Consensus       152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv  217 (251)
T COG0396         152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV  217 (251)
T ss_pred             HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence            34555556668899999999764333222   11111 0235777888889899988876555543

>PRK13768 GTPase; Provisional

Probab=94.13  E-value=0.05  Score=51.32  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=20.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .++.|.|.||+||||++..+...+
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHH
Confidence            578899999999999998866554

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.11  E-value=0.038  Score=46.49  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=20.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+++|+|..|+|||||.+.++...
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEccCCCccccceeeecccc
Confidence            579999999999999999877554

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=94.08  E-value=0.038  Score=47.62  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|+++|.+|+|||||+..+.+.
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999988754

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=94.07  E-value=0.051  Score=50.17  Aligned_cols=102  Identities=11%  Similarity=0.075  Sum_probs=57.0

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH-hH----HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHHhc--c
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI-SR----YL--------LATKLISNLLKDEN---AIP----GIDLNFRRLS--R  193 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~-~~----f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~l~--~  193 (439)
                      ..+++.|.|+.|.||||+.+.+.--. ..    ++        ...+++..+.....   ..+    ....+...++  +
T Consensus        30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~  109 (222)
T cd03287          30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT  109 (222)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC
Confidence            35688999999999999999887622 11    11        12222222222222   111    2233344443  4


Q ss_pred             CCceEEecCCC---C-HHH---HHHHhcCCCCCCCCcEEEEEeCchHHHHhc
Q 037205          194 MKVLIFFYDVT---C-FSQ---LESLMGSLDWLTPVSRIILTTRNKQVLRNW  238 (439)
Q Consensus       194 ~~~LlVlDdv~---~-~~~---~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~  238 (439)
                      ++-|++||+..   + .+.   ...+...+.. ..++.+|++|.+..+....
T Consensus       110 ~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~~  160 (222)
T cd03287         110 SRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEIL  160 (222)
T ss_pred             CCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHHH
Confidence            78999999972   1 111   1223322221 1478999999998876543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=94.06  E-value=0.048  Score=47.47  Aligned_cols=27  Identities=33%  Similarity=0.432  Sum_probs=23.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .++++|+|..|+|||||...+...++.
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~   28 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKA   28 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHh
Confidence            368999999999999999998777653

>TIGR01287 nifH nitrogenase iron protein

Probab=94.03  E-value=0.047  Score=52.14  Aligned_cols=25  Identities=32%  Similarity=0.619  Sum_probs=21.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      |.|+|+|-||+||||+|..++..+.
T Consensus         1 ~~ia~~gKGGVGKTT~a~nLA~~La   25 (275)
T TIGR01287         1 RQIAIYGKGGIGKSTTTQNIAAALA   25 (275)
T ss_pred             CeeEEeCCCcCcHHHHHHHHHHHHH
Confidence            4689999999999999998776653

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=94.03  E-value=0.068  Score=52.55  Aligned_cols=46  Identities=20%  Similarity=0.190  Sum_probs=34.9

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..+||.+..+..+.-.+..  +...-+.|.|.+|.|||||++.+..-.
T Consensus         4 ~~ivgq~~~~~al~~~~~~--~~~g~vli~G~~G~gKttl~r~~~~~~   49 (337)
T TIGR02030         4 TAIVGQDEMKLALLLNVID--PKIGGVMVMGDRGTGKSTAVRALAALL   49 (337)
T ss_pred             cccccHHHHHHHHHHHhcC--CCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence            4689999888777555442  234557799999999999999987554

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised

Probab=94.02  E-value=0.094  Score=44.87  Aligned_cols=41  Identities=17%  Similarity=0.314  Sum_probs=27.9

Q ss_pred             hHHHHHhhhcc--CCCCeeEEEEecCCCChhHH--HHHHHHhHHh
Q 037205          122 RVEEIESLLSV--ESKDVYALGIWGIGGIGKTT--IARATFDKIS  162 (439)
Q Consensus       122 ~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTt--LA~~v~~~~~  162 (439)
                      ++--|...|.+  ..++..+|||-|||-+|||.  +|..||..-+
T Consensus        37 eLGlLVDFmaEl~K~~Gh~lIGiRGmPRVGKTEsivAasVcAnKr   81 (192)
T PF11868_consen   37 ELGLLVDFMAELFKEEGHKLIGIRGMPRVGKTESIVAASVCANKR   81 (192)
T ss_pred             HhccHHHHHHHHHHhcCceEEeecCCCccCchhHHHHHhhhcCce
Confidence            45555555432  35678999999999999995  4555555444

Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=94.02  E-value=0.048  Score=53.52  Aligned_cols=48  Identities=23%  Similarity=0.214  Sum_probs=35.3

Q ss_pred             CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +...++|.+..++.+.-.+..  .+..-+.+.|.+|.||||+|+.+..-+
T Consensus         6 ~f~~i~Gq~~~~~~l~~~~~~--~~~~~vLl~G~pG~gKT~lar~la~ll   53 (334)
T PRK13407          6 PFSAIVGQEEMKQAMVLTAID--PGIGGVLVFGDRGTGKSTAVRALAALL   53 (334)
T ss_pred             CHHHhCCHHHHHHHHHHHHhc--cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence            346789999888877743321  123348899999999999999986654

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=94.00  E-value=0.034  Score=49.81  Aligned_cols=24  Identities=33%  Similarity=0.234  Sum_probs=20.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -..++|.|..|.|||||++.+...
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            457999999999999999986644

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=93.99  E-value=0.044  Score=55.23  Aligned_cols=28  Identities=21%  Similarity=0.216  Sum_probs=24.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      -++.|+|+|.+|.||||||+.+++....
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~  245 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANIFNT  245 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999999987544

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=93.96  E-value=0.12  Score=51.50  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=24.8

Q ss_pred             hhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          129 LLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       129 ~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .|..+-+--..|+|+|+.|+|||||.+.+.-.+
T Consensus       605 kldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl  637 (807)
T KOG0066|consen  605 KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL  637 (807)
T ss_pred             cccccccccceeEEECCCCccHHHHHHHHhcCC
Confidence            344444445679999999999999999877544

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=93.96  E-value=0.053  Score=53.16  Aligned_cols=53  Identities=28%  Similarity=0.251  Sum_probs=35.7

Q ss_pred             CCCCCcccccchHHH---HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          111 DNKSQLVGVESRVEE---IESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .....+||.....+.   +.++...+.-.-+.|.+.|++|.|||+||..+.+.+..
T Consensus        21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~   76 (398)
T PF06068_consen   21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGE   76 (398)
T ss_dssp             SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred             eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence            445789998765554   34444433334588999999999999999999888764

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=93.95  E-value=0.074  Score=49.63  Aligned_cols=37  Identities=14%  Similarity=0.151  Sum_probs=27.6

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..|.++|..+-..-.++.|.|.+|.|||+||.++...
T Consensus         8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~   44 (237)
T TIGR03877         8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN   44 (237)
T ss_pred             HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3444556544455679999999999999999986544

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=93.94  E-value=0.17  Score=45.37  Aligned_cols=95  Identities=15%  Similarity=0.091  Sum_probs=55.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH---------HH------HHHHHHHHHh-------cCCC---CCC--------
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR---------YL------LATKLISNLL-------KDEN---AIP--------  182 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~------~~~~ll~~l~-------~~~~---~~~--------  182 (439)
                      ....|-|+|-.|-||||.|..+.-+...         |+      --...+..+.       +...   ..+        
T Consensus        21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~  100 (191)
T PRK05986         21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA  100 (191)
T ss_pred             cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence            3467899999999999999988777654         33      1111222210       0000   000        


Q ss_pred             --cHHHHHHHhcc-CCceEEecCCC--------CHHHHHHHhcCCCCCCCCcEEEEEeCchH
Q 037205          183 --GIDLNFRRLSR-MKVLIFFYDVT--------CFSQLESLMGSLDWLTPVSRIILTTRNKQ  233 (439)
Q Consensus       183 --~~~~l~~~l~~-~~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~  233 (439)
                        ..+..++.+.. +-=|+|||.+.        +.+++-.++..   ..++..||+|-|+..
T Consensus       101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~---rp~~~evVlTGR~~p  159 (191)
T PRK05986        101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA---RPGMQHVVITGRGAP  159 (191)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc---CCCCCEEEEECCCCC
Confidence              23444555544 44599999983        23334344433   346779999999763

>PLN02165 adenylate isopentenyltransferase

Probab=93.94  E-value=0.05  Score=52.97  Aligned_cols=27  Identities=19%  Similarity=0.246  Sum_probs=23.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .-.+|+|+|+.|+||||||..++..+.
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~   68 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFP   68 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence            345899999999999999999887753

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=93.92  E-value=0.038  Score=50.53  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=21.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .-|+|+|++|+|||||+.++.....
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~   30 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEF   30 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcC
Confidence            5688999999999999999876643

>PHA02774 E1; Provisional

Probab=93.92  E-value=0.093  Score=54.58  Aligned_cols=39  Identities=15%  Similarity=0.222  Sum_probs=28.4

Q ss_pred             hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -+..+..+|. +..+..-+.|+|++|.|||.+|..+.+-+
T Consensus       420 fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L  458 (613)
T PHA02774        420 FLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFL  458 (613)
T ss_pred             HHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3455555554 33345689999999999999999877664

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=93.92  E-value=0.046  Score=44.63  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=18.8

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |+|.|++|+|||||...+.+.
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999988753

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=93.91  E-value=0.038  Score=50.82  Aligned_cols=22  Identities=27%  Similarity=0.252  Sum_probs=19.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      ...+.|||.+|+||||+|+.+.
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcC
Confidence            3568999999999999999864

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=93.91  E-value=0.043  Score=48.84  Aligned_cols=22  Identities=32%  Similarity=0.126  Sum_probs=19.2

Q ss_pred             EEEecCCCChhHHHHHHHHhHH
Q 037205          140 LGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +.|.|.+|+|||+||.++....
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~   23 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAG   23 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            6789999999999999886654

A related protein is found in archaea.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=93.90  E-value=0.086  Score=51.25  Aligned_cols=39  Identities=15%  Similarity=0.158  Sum_probs=29.4

Q ss_pred             chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          121 SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       121 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .....+...|..    -+.|.|.|.+|+||||+|+.++..+..
T Consensus        52 ~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~   90 (327)
T TIGR01650        52 ATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNW   90 (327)
T ss_pred             HHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCC
Confidence            344556666642    245899999999999999999988754

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PLN02796 D-glycerate 3-kinase

Probab=93.88  E-value=0.05  Score=53.24  Aligned_cols=26  Identities=31%  Similarity=0.282  Sum_probs=22.6

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..-+|+|.|..|+|||||++.+...+
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL  124 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLF  124 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence            46789999999999999999877654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=93.86  E-value=0.038  Score=51.60  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=17.8

Q ss_pred             EecCCCChhHHHHHHHHhHHh
Q 037205          142 IWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       142 I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      |+|++|+||||+++.+.+...
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~   21 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLE   21 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
Confidence            689999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=93.86  E-value=0.054  Score=46.62  Aligned_cols=24  Identities=33%  Similarity=0.608  Sum_probs=20.3

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++++.|.+|+||||++..+.....
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~   24 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALR   24 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHH
Confidence            378999999999999998876653

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=93.83  E-value=0.067  Score=47.72  Aligned_cols=27  Identities=33%  Similarity=0.402  Sum_probs=23.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...++.|.|.+|.||||+|+.+...+.
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l~   43 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKLE   43 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999887754

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=93.83  E-value=0.077  Score=46.50  Aligned_cols=29  Identities=31%  Similarity=0.352  Sum_probs=24.5

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +...+|=+.|++|.||||+|.+++..+..
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~   49 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEKLFA   49 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            34568888999999999999999888754

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=93.83  E-value=0.068  Score=49.28  Aligned_cols=36  Identities=22%  Similarity=0.174  Sum_probs=26.9

Q ss_pred             HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .|.++|..+-..-.++.|+|.+|+|||+||.+++..
T Consensus         7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~   42 (226)
T cd01393           7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE   42 (226)
T ss_pred             HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence            444555433345679999999999999999987654

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK13808 adenylate kinase; Provisional

Probab=93.82  E-value=0.13  Score=50.23  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      |.|+|+||+||||+++.+...+..
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~ygl   26 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYGI   26 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            778999999999999999877653

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=93.81  E-value=0.23  Score=54.33  Aligned_cols=92  Identities=15%  Similarity=0.215  Sum_probs=60.6

Q ss_pred             CCcccccchHHHHHhhhccC---C---CCeeEEEEecCCCChhHHHHHHHHhHHhH----HH-----HHHHHHHHHhcCC
Q 037205          114 SQLVGVESRVEEIESLLSVE---S---KDVYALGIWGIGGIGKTTIARATFDKISR----YL-----LATKLISNLLKDE  178 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~---~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-----~~~~ll~~l~~~~  178 (439)
                      ..++|.+..+..|.+.+...   .   ...-.+.+.|+.|+|||-||++++..+..    |+     -..+ .+.+.+..
T Consensus       562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e-vskligsp  640 (898)
T KOG1051|consen  562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE-VSKLIGSP  640 (898)
T ss_pred             hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh-hhhccCCC
Confidence            44677777777777766431   1   13567778999999999999998877644    33     1112 34444444


Q ss_pred             CCC---CcHHHHHHHhccCCc-eEEecCCCCH
Q 037205          179 NAI---PGIDLNFRRLSRMKV-LIFFYDVTCF  206 (439)
Q Consensus       179 ~~~---~~~~~l~~~l~~~~~-LlVlDdv~~~  206 (439)
                      +..   .....+.+.++.+++ +++||||+..
T Consensus       641 ~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA  672 (898)
T KOG1051|consen  641 PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA  672 (898)
T ss_pred             cccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence            422   255678888888886 5557999754

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=93.79  E-value=0.063  Score=52.26  Aligned_cols=28  Identities=21%  Similarity=0.417  Sum_probs=24.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ....|+|+|++|+||||+++.+...+..
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~  159 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAARLGV  159 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4568999999999999999999887654

>PRK00698 tmk thymidylate kinase; Validated

Probab=93.79  E-value=0.067  Score=48.38  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=22.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|.|.|+.|+||||+++.+.+.+.
T Consensus         4 ~~I~ieG~~gsGKsT~~~~L~~~l~   28 (205)
T PRK00698          4 MFITIEGIDGAGKSTQIELLKELLE   28 (205)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999887653

>TIGR00017 cmk cytidylate kinase

Probab=93.78  E-value=0.057  Score=49.69  Aligned_cols=25  Identities=36%  Similarity=0.567  Sum_probs=22.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|+|.|+.|.||||+|+.++.++.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999987665

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=93.78  E-value=0.59  Score=48.09  Aligned_cols=49  Identities=24%  Similarity=0.318  Sum_probs=37.1

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++|......++.+.+..-......+.|.|-+|+||+++|+.+.....
T Consensus       134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~  182 (463)
T TIGR01818       134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP  182 (463)
T ss_pred             cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence            4588988888888777654333344678999999999999999876543

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=93.78  E-value=0.061  Score=49.21  Aligned_cols=24  Identities=33%  Similarity=0.620  Sum_probs=20.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      |+|+|.|-||+||||++..++..+
T Consensus         1 ~~iav~gKGGvGKTt~~~nLA~~l   24 (212)
T cd02117           1 RQIAIYGKGGIGKSTTSQNLSAAL   24 (212)
T ss_pred             CEEEEECCCcCcHHHHHHHHHHHH
Confidence            478999999999999999877654

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=93.77  E-value=0.069  Score=47.18  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=22.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+.+.|+.|+|||.||+.+++.+.
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~   28 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLF   28 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45788999999999999999887765

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=93.75  E-value=0.047  Score=47.17  Aligned_cols=21  Identities=24%  Similarity=0.373  Sum_probs=18.8

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.++|.+|+|||||+..+.+.
T Consensus         3 i~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999988765

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.75  E-value=0.053  Score=50.22  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      --.|+|+|++|+|||||.+.++-
T Consensus        29 GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999998863

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.74  E-value=0.23  Score=52.55  Aligned_cols=24  Identities=29%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.+++++|++|.||||+|..+-+-
T Consensus       494 Ge~vALVGPSGsGKSTiasLL~rf  517 (716)
T KOG0058|consen  494 GEVVALVGPSGSGKSTIASLLLRF  517 (716)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            358999999999999999866443

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=93.74  E-value=0.057  Score=51.84  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=23.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..-+|.|.|.+|+||||+|..+++++.
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l~  117 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRLG  117 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346788999999999999999998864

>PF13479 AAA_24: AAA domain

Probab=93.70  E-value=0.04  Score=50.54  Aligned_cols=20  Identities=40%  Similarity=0.531  Sum_probs=17.6

Q ss_pred             eEEEEecCCCChhHHHHHHH
Q 037205          138 YALGIWGIGGIGKTTIARAT  157 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v  157 (439)
                      -.+.|+|.+|+||||+|..+
T Consensus         4 ~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    4 IKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             eEEEEECCCCCCHHHHHHhC
Confidence            35789999999999999975

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=93.70  E-value=0.059  Score=48.74  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +.|+|+|+.|.||||+|+.+.+.
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~   24 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQ   24 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999998776

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=93.69  E-value=0.17  Score=44.71  Aligned_cols=24  Identities=17%  Similarity=0.101  Sum_probs=21.2

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++.|.|.+|+||||+|..+.....
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~   26 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSG   26 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcC
Confidence            588999999999999999987754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.69  E-value=0.054  Score=49.07  Aligned_cols=22  Identities=32%  Similarity=0.308  Sum_probs=19.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -.++.|+|++|+|||||.+.+.
T Consensus        28 Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          28 GEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999998653

>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.67  E-value=0.055  Score=49.63  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=22.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..++|.|.+|+|||+|+..+.+....
T Consensus        16 qr~~I~g~~g~GKt~Ll~~i~~~~~~   41 (215)
T PF00006_consen   16 QRIGIFGGAGVGKTVLLQEIANNQDA   41 (215)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred             CEEEEEcCcccccchhhHHHHhcccc
Confidence            46889999999999999999887664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=93.67  E-value=0.054  Score=46.85  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=18.9

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.|+|.+|+|||||+..+.+.
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3779999999999999988754

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=93.66  E-value=0.074  Score=48.97  Aligned_cols=101  Identities=11%  Similarity=0.108  Sum_probs=57.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHHhc--cC
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDEN---AIP----GIDLNFRRLS--RM  194 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~l~--~~  194 (439)
                      .++++|.|+.|.||||+.+.+.-..--     |+        ....++..+.....   ..+    ....+...++  .+
T Consensus        30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~  109 (218)
T cd03286          30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP  109 (218)
T ss_pred             CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence            468899999999999999987754321     33        11122222221111   111    2333444444  57


Q ss_pred             CceEEecCCC---CHHH----HHHHhcCCCCCCCCcEEEEEeCchHHHHhc
Q 037205          195 KVLIFFYDVT---CFSQ----LESLMGSLDWLTPVSRIILTTRNKQVLRNW  238 (439)
Q Consensus       195 ~~LlVlDdv~---~~~~----~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~  238 (439)
                      +-|++||...   +..+    ...+...+.. ..++.+|++|.+..+....
T Consensus       110 ~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~-~~~~~~i~~TH~~el~~~~  159 (218)
T cd03286         110 DSLVILDELGRGTSTHDGYAIAHAVLEYLVK-KVKCLTLFSTHYHSLCDEF  159 (218)
T ss_pred             CeEEEEecccCCCCchHHHHHHHHHHHHHHH-hcCCcEEEEeccHHHHHHh
Confidence            8899999983   2222    1121222221 1378999999988876665

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=93.65  E-value=0.063  Score=47.88  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=22.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .++|.|+|+.|+|||||+..+.....
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            46889999999999999999987754

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=93.62  E-value=0.094  Score=52.52  Aligned_cols=27  Identities=22%  Similarity=0.169  Sum_probs=23.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++|.++|+.|+||||.+..++..+.
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~  199 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYG  199 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999998887653

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=93.62  E-value=0.18  Score=52.92  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=20.6

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .-..++|+|..|.|||||++.+..
T Consensus       347 ~G~~~~ivG~sGsGKSTL~~ll~g  370 (529)
T TIGR02857       347 PGERVALVGPSGAGKSTLLNLLLG  370 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            345899999999999999998764

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=93.61  E-value=0.14  Score=50.79  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=22.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      --++.|+|.+|.||||+.+.+......
T Consensus       409 GdvvaVvGqSGaGKttllRmi~G~~~~  435 (593)
T COG2401         409 GDVVAVVGQSGAGKTTLLRMILGAQKG  435 (593)
T ss_pred             CCeEEEEecCCCCcchHHHHHHHHhhc
Confidence            457899999999999999988765543

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=93.60  E-value=0.076  Score=43.67  Aligned_cols=22  Identities=45%  Similarity=0.619  Sum_probs=19.2

Q ss_pred             EEEecCCCChhHHHHHHHHhHH
Q 037205          140 LGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      |.+.|.||+||||++..++..+
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l   23 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYL   23 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999877654

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>cd01862 Rab7 Rab7 subfamily

Probab=93.60  E-value=0.049  Score=47.43  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|+|+|.+|+|||||+..+.+.
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999987655

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=93.60  E-value=0.055  Score=50.30  Aligned_cols=27  Identities=15%  Similarity=0.022  Sum_probs=21.8

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..-.++.|.|.+|.||||||.+++...
T Consensus        22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~   48 (230)
T PRK08533         22 PAGSLILIEGDESTGKSILSQRLAYGF   48 (230)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999987766544

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=93.58  E-value=0.073  Score=44.15  Aligned_cols=27  Identities=26%  Similarity=0.192  Sum_probs=22.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .-.+|.+.|.=|.||||+++.++..+.
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg   40 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALG   40 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            457899999999999999999887654

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=93.57  E-value=0.074  Score=51.80  Aligned_cols=24  Identities=50%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+++.+.|-||+||||+|.+.+-.
T Consensus         2 ~riv~f~GKGGVGKTT~aaA~A~~   25 (322)
T COG0003           2 TRIVFFTGKGGVGKTTIAAATAVK   25 (322)
T ss_pred             cEEEEEecCCcccHHHHHHHHHHH
Confidence            478999999999999999885544

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=93.56  E-value=0.096  Score=53.25  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=21.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+++.++|++|+||||++..++..+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~  246 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYA  246 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999988776654

>smart00072 GuKc Guanylate kinase homologues

Probab=93.55  E-value=0.062  Score=48.03  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=22.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+.|.|+|++|+|||||+..+....
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcC
Confidence            3678999999999999999998875

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=93.52  E-value=0.11  Score=55.15  Aligned_cols=24  Identities=29%  Similarity=0.270  Sum_probs=20.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -..++|+|..|.|||||++.+..-
T Consensus       369 G~~~aIvG~sGsGKSTLl~ll~gl  392 (582)
T PRK11176        369 GKTVALVGRSGSGKSTIANLLTRF  392 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            457999999999999999988644

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=93.51  E-value=0.12  Score=52.86  Aligned_cols=26  Identities=31%  Similarity=0.369  Sum_probs=22.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .-+-.||+|.+|.||||+.+.++.+.
T Consensus       100 ~g~rygLiG~nG~Gkst~L~~i~~~e  125 (614)
T KOG0927|consen  100 RGRRYGLIGPNGSGKSTFLRAIAGRE  125 (614)
T ss_pred             CCceEEEEcCCCCcHhHHHHHHhcCC
Confidence            34678999999999999999988664

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=93.50  E-value=0.29  Score=46.54  Aligned_cols=92  Identities=20%  Similarity=0.278  Sum_probs=53.7

Q ss_pred             hHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCc----HHHHHHH
Q 037205          122 RVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPG----IDLNFRR  190 (439)
Q Consensus       122 ~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~----~~~l~~~  190 (439)
                      .+..|...+.. .+.+.-+++.+|.+|.||.-.++.+++....      ||  ..+....  ..+....    ...++++
T Consensus        94 Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V--~~fvat~--hFP~~~~ie~Yk~eL~~~  169 (344)
T KOG2170|consen   94 VVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV--HHFVATL--HFPHASKIEDYKEELKNR  169 (344)
T ss_pred             HHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH--HHhhhhc--cCCChHHHHHHHHHHHHH
Confidence            34444554443 3456789999999999999999999988765      33  0000000  0011111    1222232


Q ss_pred             hc-----cCCceEEecCCCCH--HHHHHHhcCCC
Q 037205          191 LS-----RMKVLIFFYDVTCF--SQLESLMGSLD  217 (439)
Q Consensus       191 l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~  217 (439)
                      ++     -.+-|+|+|+++..  ..++.+.+.+.
T Consensus       170 v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd  203 (344)
T KOG2170|consen  170 VRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD  203 (344)
T ss_pred             HHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence            22     37899999999854  34666666554

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=93.49  E-value=0.068  Score=51.88  Aligned_cols=24  Identities=42%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +++.+.|-||+||||+|...+-..
T Consensus         2 r~~~~~GKGGVGKTT~aaA~A~~~   25 (305)
T PF02374_consen    2 RILFFGGKGGVGKTTVAAALALAL   25 (305)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEecCCCCCcHHHHHHHHHHH
Confidence            678899999999999998866543

...

>PRK06851 hypothetical protein; Provisional

Probab=93.48  E-value=0.31  Score=48.33  Aligned_cols=26  Identities=19%  Similarity=0.169  Sum_probs=22.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -+++.|.|.+|+|||||++.++....
T Consensus       214 ~~~~~i~G~pG~GKstl~~~i~~~a~  239 (367)
T PRK06851        214 KNRYFLKGRPGTGKSTMLKKIAKAAE  239 (367)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHH
Confidence            47899999999999999999887653

>PRK07429 phosphoribulokinase; Provisional

Probab=93.48  E-value=0.082  Score=51.77  Aligned_cols=29  Identities=34%  Similarity=0.430  Sum_probs=24.2

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .....+|+|.|.+|.||||+|+.+...+.
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~   33 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLG   33 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence            34577999999999999999998776543

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=93.47  E-value=0.069  Score=53.07  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=22.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.+++++|++|+||||++..+....
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999999999988764

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=93.47  E-value=0.11  Score=46.98  Aligned_cols=90  Identities=19%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH-----------HHHHHHHHHHHhcCCCCCCcHHHHHHHh----------ccC
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR-----------YLLATKLISNLLKDENAIPGIDLNFRRL----------SRM  194 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~~~~~ll~~l~~~~~~~~~~~~l~~~l----------~~~  194 (439)
                      +-+++.|.|.+|.||||+++.+...+..           .-....+.......   ...+..+....          ..+
T Consensus        17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~---a~Ti~~~l~~~~~~~~~~~~~~~~   93 (196)
T PF13604_consen   17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE---AQTIHSFLYRIPNGDDEGRPELPK   93 (196)
T ss_dssp             TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS----EEEHHHHTTEECCEECCSSCC-TS
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc---hhhHHHHHhcCCcccccccccCCc
Confidence            3467889999999999999988766654           11222222222100   00111110000          123


Q ss_pred             CceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeC
Q 037205          195 KVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTR  230 (439)
Q Consensus       195 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR  230 (439)
                      .-+||+|++...  .++..+.....  ..|+++|+.-=
T Consensus        94 ~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD  129 (196)
T PF13604_consen   94 KDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGD  129 (196)
T ss_dssp             TSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-
T ss_pred             ccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECC
Confidence            458999999643  45666665544  24778876543

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=93.45  E-value=0.059  Score=46.27  Aligned_cols=21  Identities=29%  Similarity=0.594  Sum_probs=18.5

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.+.|.+|+|||||+..+.+.
T Consensus         4 i~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           4 LVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999887754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=93.42  E-value=0.29  Score=48.47  Aligned_cols=118  Identities=15%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhcCCC--CCC--cHHHHH---HHhc--cCCceEEecCCCC--
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDEN--AIP--GIDLNF---RRLS--RMKVLIFFYDVTC--  205 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~~~~--~~~--~~~~l~---~~l~--~~~~LlVlDdv~~--  205 (439)
                      .|-|..||+||.|||-.|+.++.+-.-       -..+....+  ...  .+..+.   .+-+  .+..||.+|..+-  
T Consensus       384 fRNilfyGPPGTGKTm~ArelAr~SGl-------DYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFL  456 (630)
T KOG0742|consen  384 FRNILFYGPPGTGKTMFARELARHSGL-------DYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFL  456 (630)
T ss_pred             hhheeeeCCCCCCchHHHHHHHhhcCC-------ceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHH
Confidence            688999999999999999998876431       011111111  111  333333   3322  4567777898741  


Q ss_pred             ---------HHH---HHHHhcCCCCCCCCcEE-EEEeCchHH--HHhcCCCeEEEcCCCCHHHHHHHHHHh
Q 037205          206 ---------FSQ---LESLMGSLDWLTPVSRI-ILTTRNKQV--LRNWGVSKIYEMEALEYHHALELFSRH  261 (439)
Q Consensus       206 ---------~~~---~~~l~~~~~~~~~gs~I-iiTTR~~~v--~~~~~~~~~~~l~~L~~~ea~~Lf~~~  261 (439)
                               ..+   +.+|+-.....+..-.+ +.|.|..+.  +.....+.+++.+....+|-..|+..+
T Consensus       457 ceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lY  527 (630)
T KOG0742|consen  457 CERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLY  527 (630)
T ss_pred             HHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHH
Confidence                     222   44444332222222222 334453322  222235566776666777776666544

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=93.41  E-value=0.37  Score=43.33  Aligned_cols=27  Identities=30%  Similarity=0.406  Sum_probs=23.0

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+-.++||.|..|.||||+.+.++.-+
T Consensus        26 e~Gei~GlLG~NGAGKTT~LRmiatlL   52 (245)
T COG4555          26 EEGEITGLLGENGAGKTTLLRMIATLL   52 (245)
T ss_pred             ccceEEEEEcCCCCCchhHHHHHHHhc
Confidence            356799999999999999999887554

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=93.40  E-value=0.063  Score=49.24  Aligned_cols=24  Identities=25%  Similarity=0.155  Sum_probs=20.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.+++|.|..|.|||||++.++.-
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            458999999999999999986644

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=93.40  E-value=0.058  Score=51.51  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             EEEEecCCCChhHHHHHHHHhHH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +|+|.|..|+|||||++.+...+
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll   23 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLF   23 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhh
Confidence            58999999999999999877554

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=93.39  E-value=0.11  Score=48.05  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=26.1

Q ss_pred             HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .|.++|..+-..-.++.|.|.+|.||||||.++...
T Consensus         8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~   43 (229)
T TIGR03881         8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK   43 (229)
T ss_pred             hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH
Confidence            344444433344678999999999999999986643

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd04163 Era Era subfamily

Probab=93.38  E-value=0.068  Score=45.79  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=20.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...|++.|.+|+|||||+..+...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999987644

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04155 Arl3 Arl3 subfamily

Probab=93.38  E-value=0.058  Score=47.17  Aligned_cols=24  Identities=29%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...|+|+|.+|+|||||...+...
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            456899999999999999988764

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=93.37  E-value=3.4  Score=39.97  Aligned_cols=144  Identities=13%  Similarity=0.137  Sum_probs=83.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhc----------C--CCCCC--cHHHHHHHhc------cCCc
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK----------D--ENAIP--GIDLNFRRLS------RMKV  196 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~----------~--~~~~~--~~~~l~~~l~------~~~~  196 (439)
                      ..+..++|..|+||+++|..+.+.+-    ... -..+..          +  ...+.  .+..+.+.+.      +.+-
T Consensus        18 ~haYLf~G~eg~gk~~~a~~~a~~l~----c~~-~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~K   92 (299)
T PRK07132         18 SHSFLLKSNYNEDIDEKILYFLNKFN----NLQ-ITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKK   92 (299)
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHc----CcC-CCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCce
Confidence            56778999999999999999876641    000 000000          0  01111  2222333331      3667


Q ss_pred             eEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCc-hHHHHh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcch
Q 037205          197 LIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRN-KQVLRN-WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGY  272 (439)
Q Consensus       197 LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~  272 (439)
                      ++|+|+++...  ...+|+..+....+++.+|++|.+ ..+.+. ......+++.+++.++..+.+....     .+   
T Consensus        93 vvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~-----~~---  164 (299)
T PRK07132         93 ILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN-----KE---  164 (299)
T ss_pred             EEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC-----CC---
Confidence            88889886543  355666666555567777765544 444443 2346789999999999987776531     11   


Q ss_pred             HHHHHHHHHHhCCCcHHHHHH
Q 037205          273 EKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       273 ~~~~~~i~~~~~GlPLal~~~  293 (439)
                      .+.+..++..++|.--|+..+
T Consensus       165 ~~~a~~~a~~~~~~~~a~~~~  185 (299)
T PRK07132        165 KEYNWFYAYIFSNFEQAEKYI  185 (299)
T ss_pred             hhHHHHHHHHcCCHHHHHHHH
Confidence            234566666777633555553

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=93.37  E-value=0.06  Score=57.28  Aligned_cols=46  Identities=26%  Similarity=0.350  Sum_probs=36.3

Q ss_pred             CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ....++|.+..++.+...+...    +.+.++|++|+||||+|+.+.+.+
T Consensus        16 ~~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l   61 (608)
T TIGR00764        16 LIDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELL   61 (608)
T ss_pred             hHhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHc
Confidence            3467899998888888777632    256699999999999999887665

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=93.35  E-value=0.084  Score=48.38  Aligned_cols=23  Identities=43%  Similarity=0.729  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHHHHHhHH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .|+|+|-||+||||+|..+..++
T Consensus         2 kIaI~GKGG~GKTtiaalll~~l   24 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLKRL   24 (255)
T ss_pred             eEEEecCCCccHHHHHHHHHHHH
Confidence            58999999999999998755443

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=93.35  E-value=0.069  Score=50.32  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +|+|.|.+|.||||+|+.+.+.+.
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~   24 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFA   24 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999998876654

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR02012 tigrfam_recA protein RecA

Probab=93.34  E-value=0.11  Score=50.53  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=28.1

Q ss_pred             HHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          125 EIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       125 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|..+|. .+-..-+++-|+|++|+||||||.+++....
T Consensus        42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~   80 (321)
T TIGR02012        42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ   80 (321)
T ss_pred             HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3444554 3444567999999999999999998776654

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=93.30  E-value=0.15  Score=54.38  Aligned_cols=25  Identities=24%  Similarity=0.314  Sum_probs=21.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .-..++|+|..|.|||||++.+...
T Consensus       375 ~G~~vaIvG~SGsGKSTL~~lL~g~  399 (588)
T PRK11174        375 AGQRIALVGPSGAGKTSLLNALLGF  399 (588)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999987643

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=93.30  E-value=0.059  Score=45.53  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=18.9

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|+++|.+|+|||||+..+...
T Consensus         3 ki~~~G~~~~GKstl~~~l~~~   24 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLGN   24 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999887654

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=93.30  E-value=0.1  Score=48.48  Aligned_cols=37  Identities=22%  Similarity=0.136  Sum_probs=27.5

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..|.++|..+-..-.++.|+|.+|+|||+||.++...
T Consensus        12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~   48 (234)
T PRK06067         12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG   48 (234)
T ss_pred             HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH
Confidence            3444555544455678999999999999999987544

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.27  E-value=0.069  Score=48.72  Aligned_cols=25  Identities=28%  Similarity=0.171  Sum_probs=21.0

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .-.+++|.|..|.|||||++.++..
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3458999999999999999986643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=93.26  E-value=1.6  Score=43.97  Aligned_cols=69  Identities=23%  Similarity=0.320  Sum_probs=40.2

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCCCcHHHHHHHh-ccCCceEEecCCCC
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAIPGIDLNFRRL-SRMKVLIFFYDVTC  205 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~  205 (439)
                      ..++-+.+.|++|.|||-||++++-.... |.  ....+.+...+..  ...+..+...- ...+.++++|+++.
T Consensus       184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~--eK~vralf~vAr~~qPsvifidEids  256 (428)
T KOG0740|consen  184 EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGES--EKLVRALFKVARSLQPSVIFIDEIDS  256 (428)
T ss_pred             cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChH--HHHHHHHHHHHHhcCCeEEEechhHH
Confidence            34677889999999999999999988765 22  2222222221111  00122222222 23678888999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	439
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-07
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		5e-06

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 19  QKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSG 78
           +++  +I+LP+FY VDPS VR+QTG +  +F K   +F+   + +Q W+  L++   L G
Sbjct: 119 EEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKG 176
Query: 79  FHYRSIRPESELINEVVNHILKRLLEE 105
           +H      +  + ++V   I   + +E
Sbjct: 177 WHIGKNDKQGAIADKVSADIWSHISKE 203

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 19  QKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSG 78
           +K+ +  V+P+FY V+P++VR QTG   + F K   R  ++ EK+  WR+ L     LSG
Sbjct: 91  EKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSG 148
Query: 79  FHYRSIRPESELINEVVNHI 98
               S   +S+L++++ N I
Sbjct: 149 --DCSGDDDSKLVDKIANEI 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	439
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	2e-30
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	3e-29
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	7e-29
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	1e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-20
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-14
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	1e-13

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  115 bits (290), Expect = 2e-30
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 19  QKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSG 78
           +++  +I+LP+FY VDPS VR+QTG +  +F K   +F  + + +Q W+  L++   L G
Sbjct: 119 EEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKG 176

Query: 79  FHYRSIRPESELINEVVNHILKRL 102
           +H      +  + ++V   I   +
Sbjct: 177 WHIGKNDKQGAIADKVSADIWSHI 200

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  111 bits (280), Expect = 3e-29
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 20  KEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGF 79
           K+ +  V+P+FY V+P++VR QTG   + F K   R   + EK+  WR+ L     LSG 
Sbjct: 92  KKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRE--DPEKVLKWRQALTNFAQLSGD 149

Query: 80  HYRSIRPESELINEVVNHILKRL 102
                  +S+L++++ N I  + 
Sbjct: 150 CSG--DDDSKLVDKIANEISNKK 170

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  117 bits (295), Expect = 7e-29
 Identities = 56/416 (13%), Positives = 119/416 (28%), Gaps = 81/416 (19%)

Query: 50  SKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRP 109
           S+L    +      Q+      E       +   +     +  +    +L R L     P
Sbjct: 66  SELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVP 125

Query: 110 RDNKSQLVGVESRVEEI-ESLLSVESKDVYALGIWGIGGIGKTTIARA------------ 156
           +  +      E  V+ + + L  +   D + L + G  G GK+ IA              
Sbjct: 126 K--QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGIN 183

Query: 157 ----------------TFDKISRYLLATKLISNLLKDENAIPGIDLNFRR------LSRM 194
                           TFD  +  LL  K   +LL   +      +  +R      + R 
Sbjct: 184 YDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRP 243

Query: 195 KVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNW-GVSKIYEMEALEYHH 253
             L  F DV    Q E++           R ++TTR+ ++        +  E+ +LE   
Sbjct: 244 NTLFVFDDV---VQEETI---RWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDE 297

Query: 254 ALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQ 313
             +    +       +   E + +  ++   G P  L +       +  E      NKL+
Sbjct: 298 CYDFLEAYGMPMPVGEK-EEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLE 356

Query: 314 RIL-----------YPSILEVLKISYDGLDNKEKNIFLGVACF----------------- 345
                         Y S+   L+   + L +++++                         
Sbjct: 357 SRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPV 416

Query: 346 --FQVRIGFNLEIGVSV---LVDKSLIVISNNNKIT---MHDLLQELGRDIVSQES 393
                      +        L  +  ++      +    +  ++    + +V  ++
Sbjct: 417 DICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  111 bits (280), Expect = 1e-26
 Identities = 75/463 (16%), Positives = 144/463 (31%), Gaps = 101/463 (21%)

Query: 32  RVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRSIRPESELI 91
           + + SYV        + +  L       +  + +     +++V     + R++  E  + 
Sbjct: 63  KDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSS--SSGKDSVSGITSYVRTVLCEGGVP 120

Query: 92  NEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKT 151
              V                     V  +  V  I+  LS    +   + I G+ G GK+
Sbjct: 121 QRPVVF-------------------VTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKS 161

Query: 152 TIARATF----------------------DKISRYLLATKLISNLLKDENAIPGIDLNFR 189
            +A                          DK    +    L + L +DE+    + LN  
Sbjct: 162 VLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIE 221

Query: 190 RLSRM----------KVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWG 239
                          + L+   DV            L       +I+LTTR+K V  +  
Sbjct: 222 EAKDRLRILMLRKHPRSLLILDDV-------WDSWVLKAFDSQCQILLTTRDKSVTDSVM 274

Query: 240 VSK--IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL 297
             K  +    +L     LE+ S         D    + + +++K  +G PL + ++G  L
Sbjct: 275 GPKYVVPVESSLGKEKGLEILSLFVN-MKKAD--LPEQAHSIIKECKGSPLVVSLIGALL 331

Query: 298 YKREKEVWESAINKLQRIL-----------YPSILEVLKISYDGLDNKEKNIFLGVACF- 345
                  WE  + +LQ              Y ++ E + IS + L    K+ +  ++   
Sbjct: 332 RDFPNR-WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQ 390

Query: 346 ----FQVRI--------GFNLEIGVSVLVDKSLIVISNNNKIT---MHDLLQELGRDIVS 390
                  ++           +E  +   V+KSL+    N K     +HDL      D ++
Sbjct: 391 KDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQ----VDFLT 446

Query: 391 QESNDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYK 433
           +++           H+ I          + L     +    Y 
Sbjct: 447 EKNCS----QLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYN 485

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 93.0 bits (230), Expect = 2e-20
 Identities = 61/444 (13%), Positives = 125/444 (28%), Gaps = 114/444 (25%)

Query: 17  LTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREA--- 73
           L      +   P          R++  +    F+K      Q   KL+     LR A   
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 74  --VGLSGFHYRSIRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLS 131
              G+ G                                  K+ +         ++  LS
Sbjct: 154 LIDGVLGS--------------------------------GKTWVA--------LDVCLS 173

Query: 132 VESKDVYALGI-WGIGGIGKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNF-- 188
            + +      I W +  +          + + +  L  ++  N     +    I L    
Sbjct: 174 YKVQCKMDFKIFW-L-NLKNCNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 189 --RRLSRM-------KVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWG 239
               L R+         L+   +V   ++        +      +I+LTTR KQV     
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNV-QNAKA------WNAFNLSCKILLTTRFKQVTDFLS 282

Query: 240 VSKIYEM------EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL 293
            +    +        L       L  ++       D   + L   V   +   P  L ++
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYL------DCRPQDLPREV---LTTNPRRLSII 333

Query: 294 GCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKE-KNIF--LGVACFFQ--V 348
              + +     W+      + +    +  +++ S + L+  E + +F  L V   F    
Sbjct: 334 AESI-RDGLATWD----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPSA 385

Query: 349 RI-------------GFNLEIGVSVLVDKSLIVISNNN-KITMHDLLQELGRDIVSQESN 394
            I               ++ + V+ L   SL+        I++  +  EL      +  N
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL----KVKLEN 441

Query: 395 DPGNHNWLWHHEDIYEVLTYNTAS 418
           +   H  +  H +I +    +   
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLI 465

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 74.1 bits (182), Expect = 3e-14
 Identities = 58/321 (18%), Positives = 109/321 (33%), Gaps = 58/321 (18%)

Query: 117 VGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARAT---FDKISRYLLA------ 167
           V  +  V  I+  L   + +   + I+G+ G GK+ +A         +            
Sbjct: 127 VTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS 186

Query: 168 -------------TKLISNLLKDENAIPGIDLNFRRL-SRMKVLIFFYDVTCFSQLESL- 212
                          L   L ++E+    + LN      R++VL+          L+ + 
Sbjct: 187 IGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW 246

Query: 213 -MGSLDWLTPVSRIILTTRNKQVLRNW--GVSKIYEMEALEYHHALELFSRHAFKRNHPD 269
               L       +I+LTTR+K V  +       +     L     LE+ S      N   
Sbjct: 247 DPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKK 303

Query: 270 VGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQR-----------ILYP 318
                 + +++K  +G PL + ++G  L +     W   + +LQ              Y 
Sbjct: 304 EDLPAEAHSIIKECKGSPLVVSLIGALL-RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYE 362

Query: 319 SILEVLKISYDGLDNKEKNIFLGVA-------------CFFQVRIGFNLEIGVSVLVDKS 365
           ++ E + IS + L    K+ +  ++             C         +E  +   V+KS
Sbjct: 363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKS 422

Query: 366 LIVISNNNK---ITMHDLLQE 383
           L+  + N K     +HDL  +
Sbjct: 423 LLFCNRNGKSFCYYLHDLQVD 443

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 5/52 (9%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 19  QKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGL 70
           +      +LP++++V    V + + +  D  +        +++++      +
Sbjct: 102 ESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTSTK--SVDEIVADLMAI 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	439
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	100.0
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	99.94
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	99.93
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.66
2fna_A	357	Conserved hypothetical protein; structural genomic	99.65
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.62
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.52
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.5
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.45
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.38
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.34
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.22
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.1
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.01
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	98.98
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.94
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.81
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.8
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.78
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.75
3bos_A	242	Putative DNA replication factor; P-loop containing	98.7
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.69
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.67
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.66
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.65
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.65
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.64
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.64
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.6
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.55
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.53
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.51
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.5
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.49
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.49
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.47
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.45
3pvs_A	447	Replication-associated recombination protein A; ma	98.44
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.43
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.37
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.37
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.34
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.22
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.19
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.17
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.15
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.13
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.08
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.07
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.07
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	98.02
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.97
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.97
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.97
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.95
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.94
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.87
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.85
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.84
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.79
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.78
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.78
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.75
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	97.75
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.73
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.73
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.64
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.63
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.6
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	97.59
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.55
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.46
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.45
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.45
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.42
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.37
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.25
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.16
3co5_A	143	Putative two-component system transcriptional RES	97.1
2qgz_A	308	Helicase loader, putative primosome component; str	96.92
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.78
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.61
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.55
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.51
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.5
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.38
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.36
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.35
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.34
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.32
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.29
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.23
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.18
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.17
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.16
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.15
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.13
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.12
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.1
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.07
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.04
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.02
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.0
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.99
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.98
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.96
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.93
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.93
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.93
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.91
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.89
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.85
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.85
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.84
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.84
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.82
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.81
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.8
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.79
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.78
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.78
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.78
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.77
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.76
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.75
1via_A	175	Shikimate kinase; structural genomics, transferase	95.74
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.72
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.71
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.71
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.69
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.67
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.65
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.64
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.63
2xxa_A	433	Signal recognition particle protein; protein trans	95.61
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.61
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.6
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.59
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.59
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.58
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.57
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.57
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.56
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.55
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.55
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.54
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.53
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.52
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.52
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.48
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.44
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.44
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.43
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	95.43
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.43
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.41
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.4
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.39
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.38
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.37
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.36
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.35
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.33
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.31
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.31
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.3
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.28
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.25
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.21
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.21
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.19
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.17
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.15
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.11
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.11
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	95.09
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.07
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.05
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.02
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.99
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	94.99
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	94.98
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.98
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	94.98
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	94.97
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.95
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.93
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.92
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	94.89
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.89
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.84
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.83
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.81
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.75
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.71
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.7
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	94.68
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.68
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.68
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.66
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.64
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.63
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.63
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.6
3fwy_A	314	Light-independent protochlorophyllide reductase I	94.6
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.56
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.53
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	94.53
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	94.48
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.46
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.45
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.43
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.38
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.37
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.35
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.32
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.28
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.27
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.23
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	94.2
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.19
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.15
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	94.11
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.08
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	94.08
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.05
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.01
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	94.0
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.96
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	93.96
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.92
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	93.88
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	93.85
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	93.84
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	93.78
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	93.77
2r6a_A	454	DNAB helicase, replicative helicase; replication,	93.76
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	93.73
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.69
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.65
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	93.65
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.64
2og2_A	359	Putative signal recognition particle receptor; nuc	93.58
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.57
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.56
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	93.54
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.53
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.53
2js7_A	160	Myeloid differentiation primary response protein M	93.51
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	93.5
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.5
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.49
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	93.49
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.44
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.38
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	93.37
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.37
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.33
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	93.32
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.31
2wji_A	165	Ferrous iron transport protein B homolog; membrane	93.28
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.28
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.24
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	93.23
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.21
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.19
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.18
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	93.17
1g6h_A	257	High-affinity branched-chain amino acid transport	93.14
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.1
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	93.09
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.05
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.05
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	93.02
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.0
1u94_A	356	RECA protein, recombinase A; homologous recombinat	92.99
1sgw_A	214	Putative ABC transporter; structural genomics, P p	92.98
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	92.96
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	92.95
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	92.95
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	92.93
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	92.93
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	92.92
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	92.9
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	92.89
3end_A	307	Light-independent protochlorophyllide reductase ir	92.88
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	92.87
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	92.87
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.87
2ghi_A	260	Transport protein; multidrug resistance protein, M	92.83
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	92.82
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	92.8
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	92.77
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	92.75
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	92.75
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	92.71
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	92.66
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	92.64
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	92.64
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.55
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	92.54
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	92.53
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	92.49
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	92.46
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	92.46
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	92.46
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	92.44
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	92.4
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.4
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	92.4
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	92.38
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.38
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.37
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	92.36
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.34
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.29
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	92.26
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.26
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.25
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.25
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.23
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	92.21
3io5_A	333	Recombination and repair protein; storage dimer, i	92.21
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.17
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	92.16
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	92.16
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	92.15
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	92.15
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.13
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	92.11
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	92.1
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	92.08
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	92.06
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	92.06
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.99
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	91.97
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.95
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	91.95
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	91.93
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	91.91
3kta_A	182	Chromosome segregation protein SMC; structural mai	91.9
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	91.89
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	91.89
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	91.87
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	91.86
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	91.86
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	91.84
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.83
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	91.79
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	91.76
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	91.76
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	91.74
2z43_A	324	DNA repair and recombination protein RADA; archaea	91.74
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	91.73
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	91.73
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	91.7
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.67
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	91.67
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	91.66
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	91.64
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.63
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	91.61
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	91.61
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	91.56
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	91.56
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	91.55
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	91.51
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	91.5
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	91.48
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.46
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	91.45
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	91.45
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	91.44
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	91.42
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	91.39
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	91.37
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	91.36
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	91.35
2ewv_A	372	Twitching motility protein PILT; pilus retraction	91.33
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.32
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.32
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.31
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.3
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	91.28
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.28
1xp8_A	366	RECA protein, recombinase A; recombination, radior	91.25
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	91.23
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	91.21
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	91.19
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	91.18
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	91.17
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	91.15
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.15
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.1
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.09
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	91.08
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	91.06
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	91.01
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	90.99
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	90.93
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	90.93
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	90.93
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	90.92
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.92
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	90.92
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	90.92
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	90.92
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	90.9
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	90.89
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	90.88
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	90.86
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	90.86
2fh5_B	214	SR-beta, signal recognition particle receptor beta	90.83
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	90.8
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	90.79
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	90.76
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	90.75
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	90.74
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	90.73
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	90.7
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	90.69
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	90.67
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.65
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	90.64
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	90.59
3llu_A	196	RAS-related GTP-binding protein C; structural geno	90.59
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	90.58
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	90.52
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	90.48
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.48
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.46
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	90.44
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	90.39
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	90.38
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.3
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	90.3
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	90.28
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	90.25
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	90.24
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	90.21
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	90.16
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	90.13
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	90.13
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.1
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	90.06
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	90.05
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	90.05
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	90.03
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	90.03
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	90.02
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	90.01
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	89.98
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	89.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	89.86
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	89.78
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	89.77
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	89.77
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	89.76
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	89.73
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	89.72
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	89.63
1p9r_A	418	General secretion pathway protein E; bacterial typ	89.58
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	89.51
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	89.5
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	89.37
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	89.34
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	89.34
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	89.33
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	89.29
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	89.27
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	89.26
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	89.23
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	89.21
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	89.19
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	89.06
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	88.99
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	88.95
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	88.95
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	88.86
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	88.78
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	88.75
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	88.53
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	88.47
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	88.46
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	88.44
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	88.39
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	88.38
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	88.29
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	88.29
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	88.28
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	88.28
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	88.25
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	88.23
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	88.18
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	88.17
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	88.09

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=100.00  E-value=4.6e-42  Score=358.50  Aligned_cols=269  Identities=14%  Similarity=0.133  Sum_probs=211.4

Q ss_pred             ccccchHHHHHhhhccC-CCCeeEEEEecCCCChhHHHHHHHHh----HHhH------HH------------HHHHHHHH
Q 037205          117 VGVESRVEEIESLLSVE-SKDVYALGIWGIGGIGKTTIARATFD----KISR------YL------------LATKLISN  173 (439)
Q Consensus       117 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~----~~~~------f~------------~~~~ll~~  173 (439)
                      +||+.++++|.++|... ..+.++|+|+|||||||||||+++|+    +...      |+            ++..++..
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~  210 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM  210 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            59999999999999754 44689999999999999999999997    2322      32            55667777


Q ss_pred             HhcCCC-----CCC------cHHHHHHHhccC-CceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcC-C
Q 037205          174 LLKDEN-----AIP------GIDLNFRRLSRM-KVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWG-V  240 (439)
Q Consensus       174 l~~~~~-----~~~------~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~-~  240 (439)
                      +.....     ...      ....+++.|.++ ++||||||||+.+++ .+..     .+||+||||||++.++..++ .
T Consensus       211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~  284 (549)
T 2a5y_B          211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT  284 (549)
T ss_dssp             HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred             HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence            765421     111      267888999996 999999999998876 3322     27999999999999998876 4


Q ss_pred             CeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHH-HhcCCCcc
Q 037205          241 SKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINK-LQRILYPS  319 (439)
Q Consensus       241 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~-l~~~~~~~  319 (439)
                      ..+|+|++|+.++|++||.+++|.... .+.+.+++.+|+++|+|+||||+++|+.|+.++ .+|...+.. +.......
T Consensus       285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~  362 (549)
T 2a5y_B          285 CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVG  362 (549)
T ss_dssp             EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSST
T ss_pred             CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHH
Confidence            468999999999999999999976543 357788999999999999999999999998774 333333332 22224567


Q ss_pred             HHHHHHHhhcCCCHHhHHHHh-----------cccccccc---------cC--CCc-----------hhHHHHHHhhCCc
Q 037205          320 ILEVLKISYDGLDNKEKNIFL-----------GVACFFQV---------RI--GFN-----------LEIGVSVLVDKSL  366 (439)
Q Consensus       320 i~~~l~~Sy~~L~~~~k~~fl-----------~la~f~~~---------~~--~~~-----------~~~~l~~L~~~sL  366 (439)
                      +..+|.+||+.||+..|.||+           |||+||.+         ++  |+.           ...++++|+++||
T Consensus       363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsL  442 (549)
T 2a5y_B          363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGA  442 (549)
T ss_dssp             TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTTBSS
T ss_pred             HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCC
Confidence            888899999999999999999           99999976         33  332           1237999999999


Q ss_pred             eEEccC---CeEEecHHHHHHHHHHHhhhc
Q 037205          367 IVISNN---NKITMHDLLQELGRDIVSQES  393 (439)
Q Consensus       367 i~~~~~---~~~~mHdlv~~~a~~i~~~e~  393 (439)
                      |+....   .+|+|||+||+||++++.+++
T Consensus       443 l~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          443 LLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             CSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             eeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            997643   469999999999999887765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.8e-38  Score=358.69  Aligned_cols=271  Identities=21%  Similarity=0.276  Sum_probs=219.0

Q ss_pred             CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----------HH------------HHH
Q 037205          111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----------YL------------LAT  168 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------f~------------~~~  168 (439)
                      ..+..||||+.++++|.++|....+++++|+|+||||+||||||+++|++...          |+            ...
T Consensus       121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  200 (1249)
T 3sfz_A          121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ  200 (1249)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred             CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence            45678999999999999999766678999999999999999999999988532          32            244


Q ss_pred             HHHHHHhcCCC---CCC-----cHHHHHHHhccC--CceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHh-
Q 037205          169 KLISNLLKDEN---AIP-----GIDLNFRRLSRM--KVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRN-  237 (439)
Q Consensus       169 ~ll~~l~~~~~---~~~-----~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-  237 (439)
                      .++..+.....   ...     ....++..+.++  ++||||||||+..+|+.+       ++||+||||||++.++.. 
T Consensus       201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~  273 (1249)
T 3sfz_A          201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV  273 (1249)
T ss_dssp             HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred             HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence            45555544332   111     344555566655  999999999998877664       579999999999998854 


Q ss_pred             cCCCeEEEcCC-CCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHHHhcCC
Q 037205          238 WGVSKIYEMEA-LEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRIL  316 (439)
Q Consensus       238 ~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~~  316 (439)
                      ++....+++++ |+.++|++||...++..   .+.+.+.+++|+++|+|+||||+++|++|+.+. ..|+..++.+....
T Consensus       274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~  349 (1249)
T 3sfz_A          274 MGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ  349 (1249)
T ss_dssp             CSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCC
T ss_pred             cCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhh
Confidence            45667899996 99999999999988433   234456799999999999999999999998765 57999999886543


Q ss_pred             C-----------ccHHHHHHHhhcCCCHHhHHHHhcccccccc-------------cCCCchhHHHHHHhhCCceEEccC
Q 037205          317 Y-----------PSILEVLKISYDGLDNKEKNIFLGVACFFQV-------------RIGFNLEIGVSVLVDKSLIVISNN  372 (439)
Q Consensus       317 ~-----------~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~~-------------~~~~~~~~~l~~L~~~sLi~~~~~  372 (439)
                      .           ..+..+|.+||+.|++++|.||++||+||.+             .++..++.++++|+++|||+...+
T Consensus       350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~  429 (1249)
T 3sfz_A          350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRN  429 (1249)
T ss_dssp             CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEES
T ss_pred             hhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecC
Confidence            1           3589999999999999999999999999986             233456778999999999998766


Q ss_pred             Ce---EEecHHHHHHHHHHHhhh
Q 037205          373 NK---ITMHDLLQELGRDIVSQE  392 (439)
Q Consensus       373 ~~---~~mHdlv~~~a~~i~~~e  392 (439)
                      +.   |+||+|||+||++.+.++
T Consensus       430 ~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          430 GKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             SSSEEEECCHHHHHHHHHHTGGG
T ss_pred             CCceEEEecHHHHHHHHhhhhHH
Confidence            64   999999999999987765

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=312.68  Aligned_cols=294  Identities=21%  Similarity=0.262  Sum_probs=219.9

Q ss_pred             CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh---H-------HH---------HHHH--
Q 037205          111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS---R-------YL---------LATK--  169 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~-------f~---------~~~~--  169 (439)
                      ..+..||||+.++++|.++|....++.++|+|+||||+||||||.+++++..   .       |+         +...  
T Consensus       121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~  200 (591)
T 1z6t_A          121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQ  200 (591)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHH
T ss_pred             CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHH
Confidence            4567899999999999999986556789999999999999999999987642   2       32         1222  


Q ss_pred             -HHHHHhcCCC----CCC----cHHHHHHHhcc--CCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhc
Q 037205          170 -LISNLLKDEN----AIP----GIDLNFRRLSR--MKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNW  238 (439)
Q Consensus       170 -ll~~l~~~~~----~~~----~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~  238 (439)
                       +...+.....    ...    ....+...+.+  +++||||||+|+..+++.+       ++|++||||||++.++..+
T Consensus       201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~  273 (591)
T 1z6t_A          201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV  273 (591)
T ss_dssp             HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred             HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence             2223321111    111    34556666666  7899999999998776543       5789999999999887665


Q ss_pred             CCCeEEEc---CCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHHHhcC
Q 037205          239 GVSKIYEM---EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRI  315 (439)
Q Consensus       239 ~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~  315 (439)
                      . ...+++   ++|+.+||++||...++..   .....+.+.+|+++|+|+||||+++|++++... ..|...++.+...
T Consensus       274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~  348 (591)
T 1z6t_A          274 M-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNK  348 (591)
T ss_dssp             C-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSC
T ss_pred             C-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHh
Confidence            3 344554   5899999999999988542   223346789999999999999999999998653 3698888888654


Q ss_pred             C-----------CccHHHHHHHhhcCCCHHhHHHHhcccccccc-------------cCCCchhHHHHHHhhCCceEEcc
Q 037205          316 L-----------YPSILEVLKISYDGLDNKEKNIFLGVACFFQV-------------RIGFNLEIGVSVLVDKSLIVISN  371 (439)
Q Consensus       316 ~-----------~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~~-------------~~~~~~~~~l~~L~~~sLi~~~~  371 (439)
                      .           ...+..++..||+.|+++.|.||++||+||.+             .++..+...+..|+++|||....
T Consensus       349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~  428 (591)
T 1z6t_A          349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDR  428 (591)
T ss_dssp             CCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred             HHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEec
Confidence            3           24689999999999999999999999999875             11123567899999999998764


Q ss_pred             CC---eEEecHHHHHHHHHHHhhhc--------------------CCCCCeeeccChhhHHHHHhhCc
Q 037205          372 NN---KITMHDLLQELGRDIVSQES--------------------NDPGNHNWLWHHEDIYEVLTYNT  416 (439)
Q Consensus       372 ~~---~~~mHdlv~~~a~~i~~~e~--------------------~~~~~~~rl~~~~~~~~~l~~~~  416 (439)
                      ++   +|+||+++|+++++....+.                    ..++.+..+|.++.+.+++..+.
T Consensus       429 ~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~  496 (591)
T 1z6t_A          429 NGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKM  496 (591)
T ss_dssp             ETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTC
T ss_pred             CCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCC
Confidence            32   69999999999998732110                    12345566777777777776543

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=100.00  E-value=1.5e-35  Score=317.14  Aligned_cols=271  Identities=17%  Similarity=0.154  Sum_probs=198.3

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH--hH-------HH----------HHHHHHHHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI--SR-------YL----------LATKLISNL  174 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~--~~-------f~----------~~~~ll~~l  174 (439)
                      ...|||+.++++|.++|... ++.++|+|+||||+||||||+++|++.  ..       |+          +...++..+
T Consensus       128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL  206 (1221)
T 1vt4_I          128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL  206 (1221)
T ss_dssp             CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34599999999999999742 358999999999999999999999753  22       32          233333322


Q ss_pred             hc---C---CCCC--C-------cHHHHHHHh---ccCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHH
Q 037205          175 LK---D---ENAI--P-------GIDLNFRRL---SRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR  236 (439)
Q Consensus       175 ~~---~---~~~~--~-------~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~  236 (439)
                      ..   .   ....  .       ....+++.|   .++++||||||||+.++|+.+.       +||+||||||++.++.
T Consensus       207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~  279 (1221)
T 1vt4_I          207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD  279 (1221)
T ss_dssp             HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred             hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence            11   1   0011  1       234555555   5799999999999999988762       6999999999999886


Q ss_pred             hcCCCeEEEcC------CCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCC--CHHHHHHH
Q 037205          237 NWGVSKIYEME------ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKR--EKEVWESA  308 (439)
Q Consensus       237 ~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~--~~~~w~~~  308 (439)
                      .+.....|.|+      +|+.+||++||++.. ...     ..++..++   |+|+||||+++|+.|+.+  +.++|+..
T Consensus       280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~  350 (1221)
T 1vt4_I          280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV  350 (1221)
T ss_dssp             HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC
T ss_pred             hcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC
Confidence            54333356666      899999999999984 322     12333343   999999999999999876  67888753


Q ss_pred             HHHHhcCCCccHHHHHHHhhcCCCHHh-HHHHhcccccccc-------------cCC-CchhHHHHHHhhCCceEEcc-C
Q 037205          309 INKLQRILYPSILEVLKISYDGLDNKE-KNIFLGVACFFQV-------------RIG-FNLEIGVSVLVDKSLIVISN-N  372 (439)
Q Consensus       309 l~~l~~~~~~~i~~~l~~Sy~~L~~~~-k~~fl~la~f~~~-------------~~~-~~~~~~l~~L~~~sLi~~~~-~  372 (439)
                             ....+..+|.+||+.|++++ |.||++||+||.+             +++ ..+..+|++|+++|||+... .
T Consensus       351 -------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~  423 (1221)
T 1vt4_I          351 -------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE  423 (1221)
T ss_dssp             -------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSS
T ss_pred             -------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCC
Confidence                   35779999999999999999 9999999999986             222 13678899999999999863 4


Q ss_pred             CeEEecHHHHHHHHHHHhhhcCCCCCeeeccChhhHHHHH
Q 037205          373 NKITMHDLLQELGRDIVSQESNDPGNHNWLWHHEDIYEVL  412 (439)
Q Consensus       373 ~~~~mHdlv~~~a~~i~~~e~~~~~~~~rl~~~~~~~~~l  412 (439)
                      ++|+||||+++++..    ....+..++++.++.+...++
T Consensus       424 ~rYrMHDLllELr~~----~~e~~alHrRLvd~Y~~~~vf  459 (1221)
T 1vt4_I          424 STISIPSIYLELKVK----LENEYALHRSIVDHYNIPKTF  459 (1221)
T ss_dssp             SEEBCCCHHHHHHHH----HSCCTTHHHHHHHHHHHHHHC
T ss_pred             CEEEehHHHHHHhcC----CCcHHHHHHHHHHHHHhhCcC
Confidence            689999999885421    112345555555554444333

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=99.94  E-value=1.2e-27  Score=208.86  Aligned_cols=100  Identities=30%  Similarity=0.405  Sum_probs=90.9

Q ss_pred             cccchHHHHHHHHhhhhcCCCEEEEEeeecCccccccccccchhhHHHHHHHhhhchHHHHHHHHHHHHHhccccccccC
Q 037205            4 CSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRS   83 (439)
Q Consensus         4 ~~~~~~~el~~i~~~~~~~~~~vlPiFy~v~ps~vr~q~~~~~~~~~~~~~~~~~~~e~v~~W~~aL~~~~~~~g~~~~~   83 (439)
                      .|.||+.||++|++|++.+++.|+||||+|+|++||+|+|+||++|.+|+.+  .+.+++++||.||+++|+++||++. 
T Consensus        76 ~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~-  152 (176)
T 3jrn_A           76 ASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG-  152 (176)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC-
T ss_pred             CChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC-
Confidence            6899999999999999999999999999999999999999999999999987  5578999999999999999999994 


Q ss_pred             CcchhhHHHHHHHhhhhccccccc
Q 037205           84 IRPESELINEVVNHILKRLLEEVF  107 (439)
Q Consensus        84 ~~~e~~~i~~iv~~i~~~l~~~~~  107 (439)
                      .. |+++|++||++|.++|+++++
T Consensus       153 ~~-e~~~i~~Iv~~v~~~l~~~~~  175 (176)
T 3jrn_A          153 DD-DSKLVDKIANEISNKKTIYAT  175 (176)
T ss_dssp             SC-HHHHHHHHHHHHHTTCC----
T ss_pred             CC-HHHHHHHHHHHHHHHhcCCCC
Confidence            34 999999999999999987764

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=99.93  E-value=7.4e-27  Score=207.02  Aligned_cols=99  Identities=29%  Similarity=0.522  Sum_probs=92.0

Q ss_pred             cccchHHHHHHHHhhhhc-CCCEEEEEeeecCccccccccccchhhHHHHHHHhhhchHHHHHHHHHHHHHhcccccccc
Q 037205            4 CSLLIGLKLVLFHLTQKE-HAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYR   82 (439)
Q Consensus         4 ~~~~~~~el~~i~~~~~~-~~~~vlPiFy~v~ps~vr~q~~~~~~~~~~~~~~~~~~~e~v~~W~~aL~~~~~~~g~~~~   82 (439)
                      .|+||+.||++|++|+++ ++++||||||+|+|++||+|+|+||++|.+|+.++.  .+++++||.||+++|+++||++.
T Consensus       103 ~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~  180 (204)
T 3ozi_A          103 DSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIG  180 (204)
T ss_dssp             GCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEEC
T ss_pred             cCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecC
Confidence            689999999999999975 689999999999999999999999999999998874  46899999999999999999999


Q ss_pred             CCcchhhHHHHHHHhhhhcccc
Q 037205           83 SIRPESELINEVVNHILKRLLE  104 (439)
Q Consensus        83 ~~~~e~~~i~~iv~~i~~~l~~  104 (439)
                      ....|+++|++||.+|.++|+.
T Consensus       181 ~~~~e~~~i~~Iv~di~~kl~~  202 (204)
T 3ozi_A          181 KNDKQGAIADKVSADIWSHISK  202 (204)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhcc
Confidence            8877899999999999998764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.66  E-value=2.2e-15  Score=147.18  Aligned_cols=261  Identities=15%  Similarity=0.148  Sum_probs=157.5

Q ss_pred             CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH----------------HHHHHHHH
Q 037205          111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YL----------------LATKLISN  173 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~----------------~~~~ll~~  173 (439)
                      ..+..|+||+.+++.|.+.+..+    +++.|+|++|+|||||++++++.... |+                +...+...
T Consensus         9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   84 (350)
T 2qen_A            9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQST   84 (350)
T ss_dssp             CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHHH
T ss_pred             CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHHH
Confidence            56678999999999999988742    68999999999999999999876321 11                11122222


Q ss_pred             Hhc----------------CCCC--CCc----HHHHHHHhcc-CCceEEecCCCCHH--------H-HHHHhcCCCCCCC
Q 037205          174 LLK----------------DENA--IPG----IDLNFRRLSR-MKVLIFFYDVTCFS--------Q-LESLMGSLDWLTP  221 (439)
Q Consensus       174 l~~----------------~~~~--~~~----~~~l~~~l~~-~~~LlVlDdv~~~~--------~-~~~l~~~~~~~~~  221 (439)
                      +..                ....  ...    ...+...... ++++|||||++...        . +..+..... ..+
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~  163 (350)
T 2qen_A           85 ISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLP  163 (350)
T ss_dssp             SCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCT
T ss_pred             HHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcC
Confidence            111                0000  112    2233333332 48999999996532        1 222221111 124


Q ss_pred             CcEEEEEeCchHHHHhc-----------C-CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          222 VSRIILTTRNKQVLRNW-----------G-VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       222 gs~IiiTTR~~~v~~~~-----------~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      +.++|+|++........           + ....+.+.+|+.+|+.+++...........  ..+.+..++..|+|+|++
T Consensus       164 ~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~~~tgG~P~~  241 (350)
T 2qen_A          164 NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAVELLDGIPGW  241 (350)
T ss_dssp             TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHTTCHHH
T ss_pred             CeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHH
Confidence            77899998876542211           1 134789999999999999987542222111  245788999999999999


Q ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCC---CHHhHHHHhcccccccc------c----C-CCc-
Q 037205          290 LKVLGCFLYK-REKEVWESAINKLQRILYPSILEVLKISYDGL---DNKEKNIFLGVACFFQV------R----I-GFN-  353 (439)
Q Consensus       290 l~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L---~~~~k~~fl~la~f~~~------~----~-~~~-  353 (439)
                      +..++..+.. .+...+.   ..+.    +.+...+.-.+..+   ++..+.++..+|+=+..      .    . +.. 
T Consensus       242 l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~g~~~~~~l~~~~~~~~~~~~~  314 (350)
T 2qen_A          242 LVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPE  314 (350)
T ss_dssp             HHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHhCCCCHHHHHHHHHHHhCCCCH
Confidence            9999876432 2332221   1111    01111111112222   67888888888871111      0    0 333 


Q ss_pred             --hhHHHHHHhhCCceEEccCCeEEe-cHHHHHHHH
Q 037205          354 --LEIGVSVLVDKSLIVISNNNKITM-HDLLQELGR  386 (439)
Q Consensus       354 --~~~~l~~L~~~sLi~~~~~~~~~m-Hdlv~~~a~  386 (439)
                        ...+++.|.+.+||... ++.|.+ |++++.+.+
T Consensus       315 ~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~  349 (350)
T 2qen_A          315 PRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR  349 (350)
T ss_dssp             HHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence              24679999999999876 467765 678887753

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.65  E-value=7e-16  Score=151.00  Aligned_cols=260  Identities=15%  Similarity=0.162  Sum_probs=157.2

Q ss_pred             CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH---------------HHHHHHH
Q 037205          111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YL---------------LATKLIS  172 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~---------------~~~~ll~  172 (439)
                      ..+..|+||+.+++.|.+ +..     +++.|+|++|+|||||++++++....   |+               ....+..
T Consensus        10 ~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   83 (357)
T 2fna_A           10 DNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQK   83 (357)
T ss_dssp             CSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred             CCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHH
Confidence            566789999999999999 763     68999999999999999999876422   11               0111111


Q ss_pred             HH-------------hcCC-----C-----------CCCcHHHHHHHhcc---CCceEEecCCCCHH-----HHHHHhcC
Q 037205          173 NL-------------LKDE-----N-----------AIPGIDLNFRRLSR---MKVLIFFYDVTCFS-----QLESLMGS  215 (439)
Q Consensus       173 ~l-------------~~~~-----~-----------~~~~~~~l~~~l~~---~~~LlVlDdv~~~~-----~~~~l~~~  215 (439)
                      .+             ....     .           .......+.+.+..   ++++|||||++..+     ++..++..
T Consensus        84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~  163 (357)
T 2fna_A           84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAY  163 (357)
T ss_dssp             HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHH
T ss_pred             HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHH
Confidence            11             1100     0           01233344444432   48999999996532     11111111


Q ss_pred             CCCCCCCcEEEEEeCchHHHHh-----------cCC-CeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHh
Q 037205          216 LDWLTPVSRIILTTRNKQVLRN-----------WGV-SKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYV  283 (439)
Q Consensus       216 ~~~~~~gs~IiiTTR~~~v~~~-----------~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~  283 (439)
                      +....++.++|+|++.......           .+. ...+.+.+|+.+++.+++.............    ...++..|
T Consensus       164 ~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t  239 (357)
T 2fna_A          164 AYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKI  239 (357)
T ss_dssp             HHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHH
T ss_pred             HHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHh
Confidence            1111246789999997654321           111 3578999999999999998754211111211    17899999


Q ss_pred             CCCcHHHHHHHHhhcC-CCHHHHHHHHHHHhcCCCccHHHHHH-Hhhc--CCCHHhHHHHhcccccccc----c------
Q 037205          284 QGVPLALKVLGCFLYK-REKEVWESAINKLQRILYPSILEVLK-ISYD--GLDNKEKNIFLGVACFFQV----R------  349 (439)
Q Consensus       284 ~GlPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~-~Sy~--~L~~~~k~~fl~la~f~~~----~------  349 (439)
                      +|+|+++..++..+.. .+...|...   +-......+...+. +.++  .|++..+.++..+|+-+ .    +      
T Consensus       240 ~G~P~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g~-~~~~l~~~~~~~  315 (357)
T 2fna_A          240 GGIPGWLTYFGFIYLDNKNLDFAINQ---TLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSKCG-KWSDVKRALELE  315 (357)
T ss_dssp             CSCHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHccccchHHHHHH---HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-CHHHHHHHHHHh
Confidence            9999999999887642 333333221   11000011222222 1111  67888899999888832 3    1      


Q ss_pred             CC--Cc---hhHHHHHHhhCCceEEccCCeEE-ecHHHHHHH
Q 037205          350 IG--FN---LEIGVSVLVDKSLIVISNNNKIT-MHDLLQELG  385 (439)
Q Consensus       350 ~~--~~---~~~~l~~L~~~sLi~~~~~~~~~-mHdlv~~~a  385 (439)
                      .|  ..   ...+++.|.+.+||... ++.|+ -|++++++.
T Consensus       316 ~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l  356 (357)
T 2fna_A          316 EGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF  356 (357)
T ss_dssp             HCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence            12  22   34679999999999886 46676 578988764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.62  E-value=5.7e-15  Score=147.77  Aligned_cols=255  Identities=13%  Similarity=0.084  Sum_probs=152.8

Q ss_pred             CCCCCCcccccchHHHHHhhh-cc--CC--CCeeEEEE--ecCCCChhHHHHHHHHhHHhH------------HH-----
Q 037205          110 RDNKSQLVGVESRVEEIESLL-SV--ES--KDVYALGI--WGIGGIGKTTIARATFDKISR------------YL-----  165 (439)
Q Consensus       110 ~~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~------------f~-----  165 (439)
                      ...+..|+||+.+++.|.+.+ ..  ..  ...+.+.|  +|++|+||||||+.+++....            |+     
T Consensus        18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (412)
T 1w5s_A           18 NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA   97 (412)
T ss_dssp             TCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred             ccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence            355678999999999999988 42  11  23456666  999999999999999987642            11     


Q ss_pred             -----HHHHHHHHHhcCCC--CCC---cHHHHHHHhc--cCCceEEecCCCCH--------HHHHHHhcCCCCC---C--
Q 037205          166 -----LATKLISNLLKDEN--AIP---GIDLNFRRLS--RMKVLIFFYDVTCF--------SQLESLMGSLDWL---T--  220 (439)
Q Consensus       166 -----~~~~ll~~l~~~~~--~~~---~~~~l~~~l~--~~~~LlVlDdv~~~--------~~~~~l~~~~~~~---~--  220 (439)
                           +...++..+.....  ..+   ....+...+.  +++++|||||++..        +.+..+...+...   +  
T Consensus        98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~  177 (412)
T 1w5s_A           98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV  177 (412)
T ss_dssp             CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred             CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence                 44555555533222  111   2344455554  57899999999653        3333333222111   2  


Q ss_pred             CCcEEEEEeCchHHHHhc---------CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhC------C
Q 037205          221 PVSRIILTTRNKQVLRNW---------GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQ------G  285 (439)
Q Consensus       221 ~gs~IiiTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~------G  285 (439)
                      ....+|+||+...+...+         .....+.+++|+.+++.++|...+........-..+.+..+++.++      |
T Consensus       178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G  257 (412)
T 1w5s_A          178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG  257 (412)
T ss_dssp             CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred             ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC
Confidence            344578888765532111         1123489999999999999976542111111122567889999999      9


Q ss_pred             CcHHHHHHHHhh-c-----C---CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccccccc-c-------
Q 037205          286 VPLALKVLGCFL-Y-----K---REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ-V-------  348 (439)
Q Consensus       286 lPLal~~~g~~L-~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~-~-------  348 (439)
                      +|..+..+.... .     +   .+.+.+...+.....      ...+.-++..||+..+.++..+|.++. +       
T Consensus       258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~  331 (412)
T 1w5s_A          258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAG  331 (412)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHH
Confidence            997655544321 1     1   233444443333110      234455678899999999988887542 1       


Q ss_pred             --------cC----CC------chhHHHHHHhhCCceEEc
Q 037205          349 --------RI----GF------NLEIGVSVLVDKSLIVIS  370 (439)
Q Consensus       349 --------~~----~~------~~~~~l~~L~~~sLi~~~  370 (439)
                              .+    +.      ....+++.|.+.+||...
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~  371 (412)
T 1w5s_A          332 LLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK  371 (412)
T ss_dssp             HHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence                    00    11      123568899999999864

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.52  E-value=2.5e-12  Score=127.28  Aligned_cols=242  Identities=17%  Similarity=0.142  Sum_probs=156.5

Q ss_pred             CCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHH-----------hH---HH-----------
Q 037205          113 KSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKI-----------SR---YL-----------  165 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-----------~~---f~-----------  165 (439)
                      +..|+||+.+++++...+..  .....+.+.|+|++|+||||||+.+++..           ..   ++           
T Consensus        19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   98 (384)
T 2qby_B           19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA   98 (384)
T ss_dssp             CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence            47899999999999988764  23446789999999999999999999875           21   11           


Q ss_pred             HHHHHHHHHhcCCC---CCC---cHHHHHHHhccCCceEEecCCCCHHH-------HHHHhcCCCCCCCCcEEEEEeCch
Q 037205          166 LATKLISNLLKDEN---AIP---GIDLNFRRLSRMKVLIFFYDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNK  232 (439)
Q Consensus       166 ~~~~ll~~l~~~~~---~~~---~~~~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~IiiTTR~~  232 (439)
                      +...++..+.+...   ...   ....+...+...+.+|||||++....       +..+....    .+..+|+||+..
T Consensus        99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~  174 (384)
T 2qby_B           99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDI  174 (384)
T ss_dssp             HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSST
T ss_pred             HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCC
Confidence            23344555533222   111   34556666766666999999975432       33443332    677889998865


Q ss_pred             HH--------HHhcCCCeEEEcCCCCHHHHHHHHHHhhh---cCCCCCcchHHHHHHHHHHhC---CCcH-HHHHHHHhh
Q 037205          233 QV--------LRNWGVSKIYEMEALEYHHALELFSRHAF---KRNHPDVGYEKLSSNVMKYVQ---GVPL-ALKVLGCFL  297 (439)
Q Consensus       233 ~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~~g~~L  297 (439)
                      ..        ...  ....+.+++++.++..++|...+.   .....+   .+....+++.++   |.|. |+..+-...
T Consensus       175 ~~~~~l~~~l~sr--~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~  249 (384)
T 2qby_B          175 NVRDYMEPRVLSS--LGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAA  249 (384)
T ss_dssp             TTTTTSCHHHHHT--CCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             chHhhhCHHHHhc--CCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            21        122  223899999999999999998753   222222   455777888888   9887 444433332


Q ss_pred             ------cCCCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccccccc-c-----------cCC---C---c
Q 037205          298 ------YKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ-V-----------RIG---F---N  353 (439)
Q Consensus       298 ------~~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~-~-----------~~~---~---~  353 (439)
                            ..-+.+.+..++....       ...+..+++.|++.++..+..++.... +           ..|   .   .
T Consensus       250 ~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  322 (384)
T 2qby_B          250 QLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRR  322 (384)
T ss_dssp             HHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHH
T ss_pred             HHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHH
Confidence                  1246777777776643       245667788899888888877776111 1           111   1   1


Q ss_pred             hhHHHHHHhhCCceEEc
Q 037205          354 LEIGVSVLVDKSLIVIS  370 (439)
Q Consensus       354 ~~~~l~~L~~~sLi~~~  370 (439)
                      ...++..|.+++||...
T Consensus       323 ~~~~l~~L~~~gli~~~  339 (384)
T 2qby_B          323 FSDIISELDMFGIVKIR  339 (384)
T ss_dssp             HHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhCCCEEEE
Confidence            23457778888888754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.50  E-value=9.6e-13  Score=129.97  Aligned_cols=228  Identities=14%  Similarity=0.153  Sum_probs=138.8

Q ss_pred             CCCCCcccccchHHHHHhhhccC--CCCeeEEEEecCCCChhHHHHHHHHhHHhH---------HH------HHHHHHHH
Q 037205          111 DNKSQLVGVESRVEEIESLLSVE--SKDVYALGIWGIGGIGKTTIARATFDKISR---------YL------LATKLISN  173 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~------~~~~ll~~  173 (439)
                      ..+..|+||+.+++.+.+++...  ....+.+.|+|++|+||||||+.+++....         |+      ....++..
T Consensus        17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   96 (386)
T 2qby_A           17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD   96 (386)
T ss_dssp             CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred             cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence            55688999999999999988742  345678999999999999999999987631         11      11223333


Q ss_pred             HhcCCC------CCC---cHHHHHHHhc--cCCceEEecCCCCHH------HHHHHhcCCCC-CCCCcEEEEEeCchHHH
Q 037205          174 LLKDEN------AIP---GIDLNFRRLS--RMKVLIFFYDVTCFS------QLESLMGSLDW-LTPVSRIILTTRNKQVL  235 (439)
Q Consensus       174 l~~~~~------~~~---~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~~~~-~~~gs~IiiTTR~~~v~  235 (439)
                      +...-.      ...   ....+.+.+.  +++.+||||+++...      .+..+...... ...+..+|+||+.....
T Consensus        97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~  176 (386)
T 2qby_A           97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV  176 (386)
T ss_dssp             HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred             HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence            332111      111   2334444444  348899999996532      23333322211 13355677888765432


Q ss_pred             HhcC-------CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhC---CCcHHH-HHHHHhhc-----C
Q 037205          236 RNWG-------VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQ---GVPLAL-KVLGCFLY-----K  299 (439)
Q Consensus       236 ~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---GlPLal-~~~g~~L~-----~  299 (439)
                      ..+.       ....+.+++++.++..+++...+........-..+....+++.++   |.|..+ .++.....     +
T Consensus       177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~  256 (386)
T 2qby_A          177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK  256 (386)
T ss_dssp             GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence            2211       125899999999999999987653111111122566777888887   999844 33332221     1


Q ss_pred             ---CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccccc
Q 037205          300 ---REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACF  345 (439)
Q Consensus       300 ---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f  345 (439)
                         -+.+.++.++....       ...+.-++..|++..+.++..++.+
T Consensus       257 ~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~  298 (386)
T 2qby_A          257 DTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSI  298 (386)
T ss_dssp             CSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHH
Confidence               34555666555532       2356667788998888888877753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.45  E-value=2.4e-12  Score=127.19  Aligned_cols=227  Identities=14%  Similarity=0.100  Sum_probs=142.3

Q ss_pred             CCCCCcccccchHHHHHhhhccC--CCCeeEEEEecCCCChhHHHHHHHHhHHhH----------H--H----------H
Q 037205          111 DNKSQLVGVESRVEEIESLLSVE--SKDVYALGIWGIGGIGKTTIARATFDKISR----------Y--L----------L  166 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------f--~----------~  166 (439)
                      ..+..|+||+.+++.+..++...  ....+.+.|+|++|+||||||+.+++....          |  +          +
T Consensus        16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   95 (387)
T 2v1u_A           16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV   95 (387)
T ss_dssp             CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence            44578999999999999998542  345678999999999999999999987632          1  1          4


Q ss_pred             HHHHHHHHhcCCCC--CC---cHHHHHHHhc--cCCceEEecCCCCHHH-------HHHHhcCCCCC--CCCcEEEEEeC
Q 037205          167 ATKLISNLLKDENA--IP---GIDLNFRRLS--RMKVLIFFYDVTCFSQ-------LESLMGSLDWL--TPVSRIILTTR  230 (439)
Q Consensus       167 ~~~ll~~l~~~~~~--~~---~~~~l~~~l~--~~~~LlVlDdv~~~~~-------~~~l~~~~~~~--~~gs~IiiTTR  230 (439)
                      ...++..+......  ..   ....+...+.  +++.+||||+++....       +..+.......  ..+..+|.||+
T Consensus        96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~  175 (387)
T 2v1u_A           96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN  175 (387)
T ss_dssp             HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred             HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence            45566665432221  11   2344444553  4578999999975432       23333222111  34567788887


Q ss_pred             chHH--------HHhcCCCeEEEcCCCCHHHHHHHHHHhhh---cCCCCCcchHHHHHHHHHHhC---CCcH-HHHHHHH
Q 037205          231 NKQV--------LRNWGVSKIYEMEALEYHHALELFSRHAF---KRNHPDVGYEKLSSNVMKYVQ---GVPL-ALKVLGC  295 (439)
Q Consensus       231 ~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~~g~  295 (439)
                      ....        ...+ ....+.+++++.++..+++...+.   .....+   .+....+++.++   |.|. ++..+..
T Consensus       176 ~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~  251 (387)
T 2v1u_A          176 SLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRV  251 (387)
T ss_dssp             CSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             CCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            6522        2221 124789999999999999988753   222222   345677888888   9994 3333332


Q ss_pred             hhc-----C---CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhcccccccc
Q 037205          296 FLY-----K---REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQV  348 (439)
Q Consensus       296 ~L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~~  348 (439)
                      ...     +   -+.+.+..++....       ...+.-++..|++..+..++.++....+
T Consensus       252 a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~  305 (387)
T 2v1u_A          252 AGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDG  305 (387)
T ss_dssp             HHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence            221     1   35666666666542       2346667889999988888877754333

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.38  E-value=1.5e-11  Score=121.66  Aligned_cols=275  Identities=14%  Similarity=0.124  Sum_probs=162.0

Q ss_pred             CCCCCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-------HH----------HHHH
Q 037205          111 DNKSQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-------YL----------LATK  169 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~----------~~~~  169 (439)
                      ..+..++||+.+++.+...+..    .....+.+.|+|++|+||||||+.+++....       ++          +...
T Consensus        14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   93 (389)
T 1fnn_A           14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE   93 (389)
T ss_dssp             CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred             cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence            4457899999999999998864    1222348999999999999999999887631       11          3344


Q ss_pred             HHHHHhcCCC--CCC---cHHHHHHHhc--cCCceEEecCCCC--HHHHHHHhcCCCCCC----CCcEEEEEeCchHHHH
Q 037205          170 LISNLLKDEN--AIP---GIDLNFRRLS--RMKVLIFFYDVTC--FSQLESLMGSLDWLT----PVSRIILTTRNKQVLR  236 (439)
Q Consensus       170 ll~~l~~~~~--~~~---~~~~l~~~l~--~~~~LlVlDdv~~--~~~~~~l~~~~~~~~----~gs~IiiTTR~~~v~~  236 (439)
                      ++..+.....  ...   ..+.+...+.  +++.+||||+++.  ...+..|...+....    .+..+|+||++.....
T Consensus        94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~  173 (389)
T 1fnn_A           94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN  173 (389)
T ss_dssp             HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred             HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence            4444432211  111   2233333443  4678999999965  344555554443221    3667888887664332


Q ss_pred             hcC-------CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHh---------CCCcHHHHHHHHh-hc-
Q 037205          237 NWG-------VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYV---------QGVPLALKVLGCF-LY-  298 (439)
Q Consensus       237 ~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~GlPLal~~~g~~-L~-  298 (439)
                      ...       ....+.+++++.++..+++...+........-..+....+++.+         +|.|..+..+... .. 
T Consensus       174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~  253 (389)
T 1fnn_A          174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA  253 (389)
T ss_dssp             TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred             HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Confidence            221       12368999999999999998775321111112256788899999         7887654433322 11 


Q ss_pred             ----C---CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccccccc-----c---------------cCC
Q 037205          299 ----K---REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ-----V---------------RIG  351 (439)
Q Consensus       299 ----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~-----~---------------~~~  351 (439)
                          +   -+.+....+.....   ...+    .-.+..|++..+.++..++.+..     .               ..+
T Consensus       254 a~~~~~~~i~~~~v~~~~~~~~---~~~~----~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  326 (389)
T 1fnn_A          254 AQQNGRKHIAPEDVRKSSKEVL---FGIS----EEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYG  326 (389)
T ss_dssp             HHHTTCSSCCHHHHHHHHHHHS---CCCC----HHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCCCcCHHHHHHHHHHHh---hhhH----HHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcC
Confidence                1   23344444443332   1112    22345577777777776765431     1               001


Q ss_pred             ------CchhHHHHHHhhCCceEEccC-------Ce-------EEecHHHHHHHHHHHhhh
Q 037205          352 ------FNLEIGVSVLVDKSLIVISNN-------NK-------ITMHDLLQELGRDIVSQE  392 (439)
Q Consensus       352 ------~~~~~~l~~L~~~sLi~~~~~-------~~-------~~mHdlv~~~a~~i~~~e  392 (439)
                            .....+++.|.++++|.....       |+       +..|++++.+...+..+|
T Consensus       327 ~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~  387 (389)
T 1fnn_A          327 ERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE  387 (389)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence                  112357899999999987432       22       225577776666665544

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.34  E-value=1.9e-11  Score=112.09  Aligned_cols=182  Identities=15%  Similarity=0.107  Sum_probs=116.4

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH---------HHHHHHHHHhcC----
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL---------LATKLISNLLKD----  177 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~---------~~~~ll~~l~~~----  177 (439)
                      ...++||+..++.+...+..+. ..+.+.|+|++|+||||||+.+++....  ..         ....+.......    
T Consensus        22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (250)
T 1njg_A           22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI  100 (250)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred             HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence            3569999999999999987432 2357899999999999999999877542  00         000110000000    


Q ss_pred             CC-CCCcHHHHHHHh--------ccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCchHHH-H-hcCCCeEE
Q 037205          178 EN-AIPGIDLNFRRL--------SRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQVL-R-NWGVSKIY  244 (439)
Q Consensus       178 ~~-~~~~~~~l~~~l--------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~-~~~~~~~~  244 (439)
                      .. .......+...+        .+++.+||+||++.  ...++.+...+.....+..+|+||+..... . .......+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i  180 (250)
T 1njg_A          101 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF  180 (250)
T ss_dssp             ETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             cCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhc
Confidence            00 001122222222        23578999999964  445555555444345677888888765321 1 11234689


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhh
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL  297 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L  297 (439)
                      ++++++.++..+++...+.......  ..+....+++.|+|+|..+..+...+
T Consensus       181 ~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~~~  231 (250)
T 1njg_A          181 HLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTDQA  231 (250)
T ss_dssp             ECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            9999999999999988775433221  24668899999999999988776543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.22  E-value=6e-11  Score=107.38  Aligned_cols=173  Identities=12%  Similarity=0.091  Sum_probs=109.5

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhc-CCCCCCc----HH
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLK-DENAIPG----ID  185 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~-~~~~~~~----~~  185 (439)
                      ...++|++..++.+.+++...  ..+.+.|+|++|+|||+||+.+++....  +.      ..... .......    ..
T Consensus        16 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~   87 (226)
T 2chg_A           16 LDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWR------DNFIEMNASDERGIDVVRH   87 (226)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGG------GGEEEEETTCTTCHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccc------cceEEeccccccChHHHHH
Confidence            357999999999999998743  2334899999999999999999876521  00      00000 0001111    11


Q ss_pred             HHHHHh------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchHHH-Hh-cCCCeEEEcCCCCHHHHH
Q 037205          186 LNFRRL------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQVL-RN-WGVSKIYEMEALEYHHAL  255 (439)
Q Consensus       186 ~l~~~l------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-~~~~~~~~l~~L~~~ea~  255 (439)
                      .+....      ..++.+||+||++..  ...+.+...+.....+.++|+||+..... .. ......+.+++++.++..
T Consensus        88 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~  167 (226)
T 2chg_A           88 KIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMK  167 (226)
T ss_dssp             HHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred             HHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHH
Confidence            222222      256789999999653  33444443333334677888888765321 11 122358899999999999


Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHH
Q 037205          256 ELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGC  295 (439)
Q Consensus       256 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~  295 (439)
                      +++...+......  -..+....+++.++|.|..+..+..
T Consensus       168 ~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~  205 (226)
T 2chg_A          168 KRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ  205 (226)
T ss_dssp             HHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            9998876432222  1246678889999999996554433

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.10  E-value=4.9e-10  Score=107.86  Aligned_cols=175  Identities=13%  Similarity=0.152  Sum_probs=109.1

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhc-CCCCCCcHHH----HH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK-DENAIPGIDL----NF  188 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~-~~~~~~~~~~----l~  188 (439)
                      ..++|++..++.+.+++..+  ..+.+.|+|++|+||||+|+.+++.+..    ...-..+.. ...+......    +.
T Consensus        21 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~i~~~~~   94 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLG----RSYADGVLELNASDDRGIDVVRNQIK   94 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHG----GGHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred             HHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcC----CcccCCEEEecCccccChHHHHHHHH
Confidence            56999999999999998743  3333889999999999999999887521    000000111 1111111111    22


Q ss_pred             HHh-------ccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCchHH-HHh-cCCCeEEEcCCCCHHHHHHH
Q 037205          189 RRL-------SRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQV-LRN-WGVSKIYEMEALEYHHALEL  257 (439)
Q Consensus       189 ~~l-------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~-~~~~~~~~l~~L~~~ea~~L  257 (439)
                      ...       .+++.++|+||++.  ....+.|...+.....++++|+||+...- ... ......+++.+++.++..++
T Consensus        95 ~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~  174 (323)
T 1sxj_B           95 HFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKR  174 (323)
T ss_dssp             HHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred             HHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHH
Confidence            222       34578999999975  33344444333333456788888876432 111 12345899999999999999


Q ss_pred             HHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH-HHHHHHh
Q 037205          258 FSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA-LKVLGCF  296 (439)
Q Consensus       258 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~~g~~  296 (439)
                      +...+......  -..+.+..+++.++|.|.. +..+...
T Consensus       175 l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~~~  212 (323)
T 1sxj_B          175 LLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQST  212 (323)
T ss_dssp             HHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            98876432221  1246678899999999954 5554433

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.01  E-value=1.1e-09  Score=105.63  Aligned_cols=173  Identities=15%  Similarity=0.122  Sum_probs=109.5

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhc-CCCCC---C-cHH
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLK-DENAI---P-GID  185 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~-~~~~~---~-~~~  185 (439)
                      ..+++|++..++.+..++..+  ..+.+.|+|++|+||||+|+.+++.+..  |.      ..... ...+.   + ...
T Consensus        24 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~   95 (327)
T 1iqp_A           24 LDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWR------HNFLELNASDERGINVIRE   95 (327)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHH------HHEEEEETTCHHHHHTTHH
T ss_pred             HHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCccc------CceEEeeccccCchHHHHH
Confidence            467999999999999988743  3344899999999999999999887531  10      00000 00000   0 111


Q ss_pred             HHHHHh-----c-cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchHH-HHhc-CCCeEEEcCCCCHHHHH
Q 037205          186 LNFRRL-----S-RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQV-LRNW-GVSKIYEMEALEYHHAL  255 (439)
Q Consensus       186 ~l~~~l-----~-~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~  255 (439)
                      .+....     . +++.++|+|+++..  ...+.|...+.....++++|+||..... .... .....+.+++++.++..
T Consensus        96 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~  175 (327)
T 1iqp_A           96 KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIA  175 (327)
T ss_dssp             HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHH
T ss_pred             HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHH
Confidence            222211     1 56789999999643  3445554444333467788888876532 1111 12347899999999999


Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHH
Q 037205          256 ELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGC  295 (439)
Q Consensus       256 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~  295 (439)
                      +++...+......  -..+....+++.++|.|..+..+..
T Consensus       176 ~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~  213 (327)
T 1iqp_A          176 KRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQ  213 (327)
T ss_dssp             HHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence            9998876433321  2256678899999999987554433

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=98.98  E-value=1e-10  Score=100.72  Aligned_cols=50  Identities=12%  Similarity=0.082  Sum_probs=46.1

Q ss_pred             cccchHHHHHHHHhhhhcCCCEEEEEeeecCccccccccccchhhHHHHH
Q 037205            4 CSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQ   53 (439)
Q Consensus         4 ~~~~~~~el~~i~~~~~~~~~~vlPiFy~v~ps~vr~q~~~~~~~~~~~~   53 (439)
                      .|.||+.||+++++|...+++.|+||||+|+|++||+|.|.|+++|....
T Consensus        87 ~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~  136 (154)
T 3h16_A           87 KKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT  136 (154)
T ss_dssp             TTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred             cChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence            48999999999999998888999999999999999999999999887543

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.94  E-value=2e-08  Score=96.70  Aligned_cols=246  Identities=16%  Similarity=0.121  Sum_probs=143.0

Q ss_pred             CCCCcccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHH
Q 037205          112 NKSQLVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLN  187 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l  187 (439)
                      ...+++|++..++.+...+..   .......+.|+|++|+|||+||+.+++.... |+         .-..........+
T Consensus        10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~---------~~~~~~~~~~~~l   80 (324)
T 1hqc_A           10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR---------VTSGPAIEKPGDL   80 (324)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE---------EECTTTCCSHHHH
T ss_pred             cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE---------EEeccccCChHHH
Confidence            346799999999998888753   1223457889999999999999998876431 10         0011112223344


Q ss_pred             HHHhcc---CCceEEecCCCCHH--HHHHHhcCCCCC------------------CCCcEEEEEeCchHHH-Hhc--CCC
Q 037205          188 FRRLSR---MKVLIFFYDVTCFS--QLESLMGSLDWL------------------TPVSRIILTTRNKQVL-RNW--GVS  241 (439)
Q Consensus       188 ~~~l~~---~~~LlVlDdv~~~~--~~~~l~~~~~~~------------------~~gs~IiiTTR~~~v~-~~~--~~~  241 (439)
                      ...+.+   .+.+|+||+++...  ....|...+...                  .++.++|.||...... ..+  ...
T Consensus        81 ~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~  160 (324)
T 1hqc_A           81 AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFG  160 (324)
T ss_dssp             HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCS
T ss_pred             HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhccc
Confidence            444443   67799999997532  223332211100                  0235677666643221 111  123


Q ss_pred             eEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcC---------CCHHHHHHHHHHH
Q 037205          242 KIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYK---------REKEVWESAINKL  312 (439)
Q Consensus       242 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~---------~~~~~w~~~l~~l  312 (439)
                      ..+.+++++.++..+++...+......  -..+....++++++|+|..+..+...+..         -+.+.....+..+
T Consensus       161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~  238 (324)
T 1hqc_A          161 IVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL  238 (324)
T ss_dssp             CEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence            588999999999999988877433322  22567889999999999988776655421         1233333333322


Q ss_pred             hcCCCccHHHHHHHhhcCCCHHhHHHHhcccccccc----------cCCCch---hHHHHH-HhhCCceEEccCCeEEec
Q 037205          313 QRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQV----------RIGFNL---EIGVSV-LVDKSLIVISNNNKITMH  378 (439)
Q Consensus       313 ~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~~----------~~~~~~---~~~l~~-L~~~sLi~~~~~~~~~mH  378 (439)
                                  ..++..|++.++..+..+.....+          ..|...   ...++. +++.+||.....| ..+-
T Consensus       239 ------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g-~~~~  305 (324)
T 1hqc_A          239 ------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRG-RVPT  305 (324)
T ss_dssp             ------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTE-EEEC
T ss_pred             ------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCcc-ceec
Confidence                        233456777777777665543322          122221   122333 8889999876444 3444


Q ss_pred             HHH
Q 037205          379 DLL  381 (439)
Q Consensus       379 dlv  381 (439)
                      +..
T Consensus       306 ~~~  308 (324)
T 1hqc_A          306 ELA  308 (324)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.81  E-value=8.1e-08  Score=94.14  Aligned_cols=198  Identities=14%  Similarity=0.091  Sum_probs=112.1

Q ss_pred             hhhHHHHHHHhhhhcccccccCCCCCCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHH
Q 037205           87 ESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARA  156 (439)
Q Consensus        87 e~~~i~~iv~~i~~~l~~~~~~p~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~  156 (439)
                      +...++.+...+.....+      ..-.+++|.+..++.|.+.+..          .....+.|.|+|++|+|||+||+.
T Consensus        63 ~~~~~~~i~~~i~~~~~~------~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~a  136 (357)
T 3d8b_A           63 EPKMIELIMNEIMDHGPP------VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKC  136 (357)
T ss_dssp             CHHHHHHHHHHTBCCSCC------CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHH
T ss_pred             ChHHHHHHHhhcccCCCC------CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHH
Confidence            556666666666544333      2336799999999999887642          123456789999999999999999


Q ss_pred             HHhHHhH-HH--HHHHHHHHHhcCCCCC--CcHHHH-HHHhccCCceEEecCCCCH-------------HHHHHHhcCCC
Q 037205          157 TFDKISR-YL--LATKLISNLLKDENAI--PGIDLN-FRRLSRMKVLIFFYDVTCF-------------SQLESLMGSLD  217 (439)
Q Consensus       157 v~~~~~~-f~--~~~~ll~~l~~~~~~~--~~~~~l-~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~  217 (439)
                      +++.... |+  ...    .+.......  .....+ .......+.+|+||+++..             ..+..++..+.
T Consensus       137 ia~~~~~~~~~i~~~----~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~  212 (357)
T 3d8b_A          137 IASQSGATFFSISAS----SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLD  212 (357)
T ss_dssp             HHHHTTCEEEEEEGG----GGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHH
T ss_pred             HHHHcCCeEEEEehH----HhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHh
Confidence            9876542 11  000    000000000  011111 1222346789999999432             11222222211


Q ss_pred             ----CCCCCcEEEEEeCchHHHH-h--cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCC-CcHH
Q 037205          218 ----WLTPVSRIILTTRNKQVLR-N--WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQG-VPLA  289 (439)
Q Consensus       218 ----~~~~gs~IiiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLa  289 (439)
                          ....+..||.||....... .  -.....+.++..+.++..+++...+.......  ..+....+++.+.| .+-.
T Consensus       213 ~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~l~~la~~t~G~s~~d  290 (357)
T 3d8b_A          213 GATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL--SEEEIEQIVQQSDAFSGAD  290 (357)
T ss_dssp             C----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC--CHHHHHHHHHHTTTCCHHH
T ss_pred             cccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc--cHHHHHHHHHHcCCCCHHH
Confidence                1123445666665432211 1  13345788999999999998887763322211  14567788888988 4555


Q ss_pred             HHHHHHh
Q 037205          290 LKVLGCF  296 (439)
Q Consensus       290 l~~~g~~  296 (439)
                      |..+...
T Consensus       291 l~~l~~~  297 (357)
T 3d8b_A          291 MTQLCRE  297 (357)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665443

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.80  E-value=6.5e-08  Score=92.69  Aligned_cols=173  Identities=12%  Similarity=0.090  Sum_probs=110.5

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhcCCC-CCC-cHHHHHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLKDEN-AIP-GIDLNFR  189 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~~~~-~~~-~~~~l~~  189 (439)
                      .+++|++..++.+.+.+..+  ..+.+.++|++|+|||++|+.+++.+..  |-   .-...+..... ... ....+..
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   91 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWR---DNFIEMNASDERGIDVVRHKIKE   91 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHH---HHCEEEETTSTTCTTTSSHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCccc---CCeEEEeCccccChHHHHHHHHH
Confidence            56999999999999988743  3334889999999999999999887521  10   00000010111 111 2222222


Q ss_pred             Hh------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHh-cCCCeEEEcCCCCHHHHHHHHH
Q 037205          190 RL------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIYEMEALEYHHALELFS  259 (439)
Q Consensus       190 ~l------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~  259 (439)
                      ..      .+++.++|+|+++..  ...+.|...+.....+.++|+||.... +... ......+++.+++.++..+++.
T Consensus        92 ~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~  171 (319)
T 2chq_A           92 FARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL  171 (319)
T ss_dssp             HHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHH
T ss_pred             HHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHH
Confidence            22      256789999999643  445666666655556778888876543 1111 1234589999999999999998


Q ss_pred             HhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205          260 RHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       260 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~  293 (439)
                      ..+......  -..+....+++.++|.+..+...
T Consensus       172 ~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~  203 (319)
T 2chq_A          172 EICEKEGVK--ITEDGLEALIYISGGDFRKAINA  203 (319)
T ss_dssp             HHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred             HHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence            776433322  12456788889999999865443

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.78  E-value=1.6e-07  Score=92.22  Aligned_cols=179  Identities=14%  Similarity=0.111  Sum_probs=111.1

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---H--------HHHHHHHHH----Hh--
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---Y--------LLATKLISN----LL--  175 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f--------~~~~~ll~~----l~--  175 (439)
                      ..+++|++..++.+...+..+. ....+.|+|++|+||||+|+.+++....   .        .....+...    +.  
T Consensus        15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (373)
T 1jr3_A           15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI   93 (373)
T ss_dssp             TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEE
T ss_pred             hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEe
Confidence            3569999999999999886432 2347889999999999999999876531   0        001111100    00  


Q ss_pred             c-CC-CCCCcHHHHHHHhc-----cCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCchHH-HHh-cCCCeEE
Q 037205          176 K-DE-NAIPGIDLNFRRLS-----RMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQV-LRN-WGVSKIY  244 (439)
Q Consensus       176 ~-~~-~~~~~~~~l~~~l~-----~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~-~~~~~~~  244 (439)
                      . .. ........+...+.     +++.++|+||++.  ....+.|...+.....+..+|++|.+..- ... ......+
T Consensus        94 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i  173 (373)
T 1jr3_A           94 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF  173 (373)
T ss_dssp             ETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             cccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEe
Confidence            0 00 01123344444443     4568999999964  33445554444333456677777764431 111 1234688


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLG  294 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g  294 (439)
                      ++.+++.++..+++...+......  -..+.+..+++.++|.|..+..+.
T Consensus       174 ~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l  221 (373)
T 1jr3_A          174 HLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT  221 (373)
T ss_dssp             ECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence            999999999999998766332221  124567889999999999876554

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.75  E-value=3.8e-08  Score=93.06  Aligned_cols=174  Identities=22%  Similarity=0.308  Sum_probs=102.0

Q ss_pred             CCCCCcccccchHHHHHhhhccC-----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhc
Q 037205          111 DNKSQLVGVESRVEEIESLLSVE-----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLK  176 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~  176 (439)
                      ....+++|.+..++.|.+.+...           ....+.+.|+|++|+|||+||+.+++.... |+  ..    ..+..
T Consensus        14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~----~~~~~   89 (285)
T 3h4m_A           14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG----SELVK   89 (285)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG----GGGCC
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh----HHHHH
Confidence            44577999999999998877431           134567899999999999999999877643 11  00    00000


Q ss_pred             CCCCCC----cH-HHHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCC--CCCCCcEEEEEeCchH
Q 037205          177 DENAIP----GI-DLNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLD--WLTPVSRIILTTRNKQ  233 (439)
Q Consensus       177 ~~~~~~----~~-~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~--~~~~gs~IiiTTR~~~  233 (439)
                      .  ...    .. ..+.......+.+|+||+++..                ..+..++....  ....+..||.||....
T Consensus        90 ~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~  167 (285)
T 3h4m_A           90 K--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD  167 (285)
T ss_dssp             C--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred             h--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence            0  000    11 1122223346689999999643                11223322211  1234567778887543


Q ss_pred             HHH-----hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCC-CcHHHHHH
Q 037205          234 VLR-----NWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQG-VPLALKVL  293 (439)
Q Consensus       234 v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~  293 (439)
                      ...     .......+.++.++.++..+++...+.......   ......++..+.| .|-.+..+
T Consensus       168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~i~~l  230 (285)
T 3h4m_A          168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE---DVNLEEIAKMTEGCVGAELKAI  230 (285)
T ss_dssp             GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCHHHHHHH
T ss_pred             hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCHHHHHHH
Confidence            322     112345789999999999999988764332211   1124567777777 45455443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.70  E-value=1.5e-08  Score=92.87  Aligned_cols=170  Identities=15%  Similarity=0.154  Sum_probs=96.3

Q ss_pred             CCCCCccccc---chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCC
Q 037205          111 DNKSQLVGVE---SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAI  181 (439)
Q Consensus       111 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~  181 (439)
                      ....+|+|.+   ..++.+..+...  ...+.+.|+|++|+||||||+.+++....      |+....+    ..   . 
T Consensus        25 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~----~~---~-   94 (242)
T 3bos_A           25 ETFTSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH----AS---I-   94 (242)
T ss_dssp             CSTTTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG----GG---S-
T ss_pred             CChhhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH----HH---H-
Confidence            3446788743   445555555542  24577899999999999999998877642      1000000    00   0 


Q ss_pred             CcHHHHHHHhccCCceEEecCCCCHH--H--HHHHhcCCCCC-CCC-cEEEEEeCchH---------HHHhcCCCeEEEc
Q 037205          182 PGIDLNFRRLSRMKVLIFFYDVTCFS--Q--LESLMGSLDWL-TPV-SRIILTTRNKQ---------VLRNWGVSKIYEM  246 (439)
Q Consensus       182 ~~~~~l~~~l~~~~~LlVlDdv~~~~--~--~~~l~~~~~~~-~~g-s~IiiTTR~~~---------v~~~~~~~~~~~l  246 (439)
                       .... .+.+ .++.+||+||++...  .  .+.+...+... ..+ .++|+||+...         +...+.....+++
T Consensus        95 -~~~~-~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l  171 (242)
T 3bos_A           95 -STAL-LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQL  171 (242)
T ss_dssp             -CGGG-GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEEC
T ss_pred             -HHHH-HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEe
Confidence             0000 1111 356789999995431  1  22222211100 112 24777776321         2222222368999


Q ss_pred             CCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHH
Q 037205          247 EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGC  295 (439)
Q Consensus       247 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~  295 (439)
                      ++++.++..+++...+......  -..+....+++.++|.+-.+..+..
T Consensus       172 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~  218 (242)
T 3bos_A          172 QPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDVLD  218 (242)
T ss_dssp             CCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHHHH
Confidence            9999999999998876432221  1256678889999999877655433

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.69  E-value=1.3e-08  Score=89.54  Aligned_cols=48  Identities=19%  Similarity=0.297  Sum_probs=40.6

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...++||+..++.+.+.+..  ...+.+.|+|++|+|||+||+.+++...
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           21 LDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999874  3345678999999999999999988763

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.67  E-value=2.4e-07  Score=89.79  Aligned_cols=248  Identities=16%  Similarity=0.126  Sum_probs=139.6

Q ss_pred             CCCcccccchHHHHHhhhccC---CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHHH
Q 037205          113 KSQLVGVESRVEEIESLLSVE---SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLNF  188 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l~  188 (439)
                      ..+++|++..++.+..++...   ....+.|.|+|++|+|||+||+.+++.... |+.         -..........+.
T Consensus        28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~---------~~~~~~~~~~~~~   98 (338)
T 3pfi_A           28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKT---------TAAPMIEKSGDLA   98 (338)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE---------EEGGGCCSHHHHH
T ss_pred             HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE---------ecchhccchhHHH
Confidence            367999999999999988642   334556899999999999999998776532 110         0000111222333


Q ss_pred             HHhc--cCCceEEecCCCCH--HHHHHHhcCCCCC------------------CCCcEEEEEeCchHHH-Hh-c-CCCeE
Q 037205          189 RRLS--RMKVLIFFYDVTCF--SQLESLMGSLDWL------------------TPVSRIILTTRNKQVL-RN-W-GVSKI  243 (439)
Q Consensus       189 ~~l~--~~~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~~gs~IiiTTR~~~v~-~~-~-~~~~~  243 (439)
                      ..+.  ....+|+||+++..  .....|...+...                  .++..+|.||...... .. . .....
T Consensus        99 ~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~  178 (338)
T 3pfi_A           99 AILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQ  178 (338)
T ss_dssp             HHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEE
T ss_pred             HHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEE
Confidence            3332  36688999999643  2223332211110                  1124566665543221 11 1 23478


Q ss_pred             EEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhh------cC---CCHHHHHHHHHHHhc
Q 037205          244 YEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL------YK---REKEVWESAINKLQR  314 (439)
Q Consensus       244 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L------~~---~~~~~w~~~l~~l~~  314 (439)
                      +.+++++.++...++...+.....  .-..+....+++.+.|.|-.+..+...+      .+   -+.+.....+..   
T Consensus       179 i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~---  253 (338)
T 3pfi_A          179 FRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS---  253 (338)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH---
T ss_pred             eeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH---
Confidence            999999999999999877643221  1225667888889999996655443332      11   123333322222   


Q ss_pred             CCCccHHHHHHHhhcCCCHHhHHHHhcccccccc---------cCCCc---hhHHHH-HHhhCCceEEccCCeEEecHHH
Q 037205          315 ILYPSILEVLKISYDGLDNKEKNIFLGVACFFQV---------RIGFN---LEIGVS-VLVDKSLIVISNNNKITMHDLL  381 (439)
Q Consensus       315 ~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~~---------~~~~~---~~~~l~-~L~~~sLi~~~~~~~~~mHdlv  381 (439)
                               +..+...++..++..+..++-...+         ..|..   ....++ .|++.++|.....|++.-.--+
T Consensus       254 ---------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~t~~~~  324 (338)
T 3pfi_A          254 ---------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSY  324 (338)
T ss_dssp             ---------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEECHHHH
T ss_pred             ---------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcccccHHHH
Confidence                     2333445665556666555544111         11221   122355 8999999988766665444443


Q ss_pred             HH
Q 037205          382 QE  383 (439)
Q Consensus       382 ~~  383 (439)
                      .-
T Consensus       325 ~~  326 (338)
T 3pfi_A          325 SA  326 (338)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.66  E-value=3.4e-07  Score=85.98  Aligned_cols=193  Identities=13%  Similarity=0.086  Sum_probs=103.5

Q ss_pred             CCcccccchHHHHHh-------hhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcH
Q 037205          114 SQLVGVESRVEEIES-------LLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGI  184 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~  184 (439)
                      ..++|.+..++++..       .+.. .....+.+.|+|++|+|||+||+.+++.... |+.... ...+.+. ......
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~-~~~~~g~-~~~~~~  110 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS-PDKMIGF-SETAKC  110 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC-GGGCTTC-CHHHHH
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeC-HHHhcCC-chHHHH
Confidence            457888777666665       2221 2445778999999999999999999876432 110000 0000000 000011


Q ss_pred             HHH----HHHhccCCceEEecCCCCH------------HHHHHHhcCCC---CCCCCcEEEEEeCchHHHHhc----CCC
Q 037205          185 DLN----FRRLSRMKVLIFFYDVTCF------------SQLESLMGSLD---WLTPVSRIILTTRNKQVLRNW----GVS  241 (439)
Q Consensus       185 ~~l----~~~l~~~~~LlVlDdv~~~------------~~~~~l~~~~~---~~~~gs~IiiTTR~~~v~~~~----~~~  241 (439)
                      ..+    ......+..+|+||+++..            ..++.|...+.   ..+....||.||.........    ...
T Consensus       111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~  190 (272)
T 1d2n_A          111 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFS  190 (272)
T ss_dssp             HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSS
T ss_pred             HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccc
Confidence            112    2222356789999998543            12333333222   123345577788877554431    124


Q ss_pred             eEEEcCCCCH-HHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCC------CcHHHHHHHHhhcCCCHHHHHHHHHHHhc
Q 037205          242 KIYEMEALEY-HHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQG------VPLALKVLGCFLYKREKEVWESAINKLQR  314 (439)
Q Consensus       242 ~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G------lPLal~~~g~~L~~~~~~~w~~~l~~l~~  314 (439)
                      ..+.+++++. ++...++....    ...   .+....+++.+.|      ++-++..+-..........+..++..+..
T Consensus       191 ~~i~~p~l~~r~~i~~i~~~~~----~~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~  263 (272)
T 1d2n_A          191 TTIHVPNIATGEQLLEALELLG----NFK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLRE  263 (272)
T ss_dssp             EEEECCCEEEHHHHHHHHHHHT----CSC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred             eEEcCCCccHHHHHHHHHHhcC----CCC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence            6789999988 55555554421    111   4557788888887      33444444333333334455566655544


Q ss_pred             C
Q 037205          315 I  315 (439)
Q Consensus       315 ~  315 (439)
                      .
T Consensus       264 ~  264 (272)
T 1d2n_A          264 E  264 (272)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.65  E-value=2.7e-07  Score=94.91  Aligned_cols=173  Identities=17%  Similarity=0.172  Sum_probs=100.6

Q ss_pred             CCCcccccchHHHHHhhhccC---------------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH-----------
Q 037205          113 KSQLVGVESRVEEIESLLSVE---------------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL-----------  165 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~-----------  165 (439)
                      ..+++|++..++.+.+++...               ....+.+.|+|++|+||||+|+.+++.... ++           
T Consensus        38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~  117 (516)
T 1sxj_A           38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKT  117 (516)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHH
Confidence            367999999999999998641               013478999999999999999999887642 11           


Q ss_pred             HHHHHHHHHhcCCCCCC-cHHHHHH--HhccCCceEEecCCCCH--------HHHHHHhcCCCCCCCCcEEEEEeCchH-
Q 037205          166 LATKLISNLLKDENAIP-GIDLNFR--RLSRMKVLIFFYDVTCF--------SQLESLMGSLDWLTPVSRIILTTRNKQ-  233 (439)
Q Consensus       166 ~~~~ll~~l~~~~~~~~-~~~~l~~--~l~~~~~LlVlDdv~~~--------~~~~~l~~~~~~~~~gs~IiiTTR~~~-  233 (439)
                      .....+....... ... .......  ....++.+|++|+++..        ..+..+...     .+..||+++.+.. 
T Consensus       118 ~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-----~~~~iIli~~~~~~  191 (516)
T 1sxj_A          118 LLNAGVKNALDNM-SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-----TSTPLILICNERNL  191 (516)
T ss_dssp             HHHHTGGGGTTBC-CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----CSSCEEEEESCTTS
T ss_pred             HHHHHHHHHhccc-cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----cCCCEEEEEcCCCC
Confidence            1111111111100 000 0000000  12356789999999542        223333322     2334665554322 


Q ss_pred             --HHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHH
Q 037205          234 --VLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVL  293 (439)
Q Consensus       234 --v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~  293 (439)
                        +.........+.+++++.++..+.+...+.......+  .+....|++.++|.+- ++..+
T Consensus       192 ~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L  252 (516)
T 1sxj_A          192 PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL  252 (516)
T ss_dssp             STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred             ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence              2222234567899999999999998877644332111  3447788899999554 44444

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.65  E-value=3.1e-07  Score=85.42  Aligned_cols=177  Identities=15%  Similarity=0.175  Sum_probs=99.2

Q ss_pred             CCCCCcccccchHHHHHhhhcc---C-------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCC-
Q 037205          111 DNKSQLVGVESRVEEIESLLSV---E-------SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDE-  178 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~-  178 (439)
                      ..-.+++|.+..++.+.+++..   .       ....+.+.|+|++|+|||+||+.+++.... |+       .+.... 
T Consensus         3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~-------~~~~~~~   75 (262)
T 2qz4_A            3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFL-------AMAGAEF   75 (262)
T ss_dssp             CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE-------EEETTTT
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE-------EechHHH
Confidence            3446789999888888776531   1       123456889999999999999999886542 11       000000 


Q ss_pred             -CCCC------cHHHHHHHhccCCceEEecCCCCH-----------------HHHHHHhcCCCC--CCCCcEEEEEeCch
Q 037205          179 -NAIP------GIDLNFRRLSRMKVLIFFYDVTCF-----------------SQLESLMGSLDW--LTPVSRIILTTRNK  232 (439)
Q Consensus       179 -~~~~------~~~~l~~~l~~~~~LlVlDdv~~~-----------------~~~~~l~~~~~~--~~~gs~IiiTTR~~  232 (439)
                       ....      ....+.......+.+|+||+++..                 ..+..++..+..  ...+..||.||...
T Consensus        76 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~  155 (262)
T 2qz4_A           76 VEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRA  155 (262)
T ss_dssp             SSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred             HhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCCh
Confidence             0000      111222222345789999999754                 112233322211  12345666777654


Q ss_pred             HHHHh-c----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHHH
Q 037205          233 QVLRN-W----GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLGC  295 (439)
Q Consensus       233 ~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~  295 (439)
                      ..... .    .....+.++.++.++-.+++...+..... ..........+++.+.|.+- .|..+..
T Consensus       156 ~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l~~  223 (262)
T 2qz4_A          156 DILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANICN  223 (262)
T ss_dssp             GGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             hhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence            32211 1    23467889999999999999887643322 21222235778888888754 4544433

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.64  E-value=7.2e-07  Score=86.72  Aligned_cols=174  Identities=13%  Similarity=0.154  Sum_probs=103.5

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhc-CCCCCCcHHHH----
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK-DENAIPGIDLN----  187 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~-~~~~~~~~~~l----  187 (439)
                      ...++|++..++.+...+..+.  .+.+.|+|++|+||||+|+.+++.+..   ....-..+.. ...+......+    
T Consensus        36 ~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (353)
T 1sxj_D           36 LDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYG---PDLMKSRILELNASDERGISIVREKV  110 (353)
T ss_dssp             TTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHH---HHHHTTSEEEECSSSCCCHHHHTTHH
T ss_pred             HHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCC---CcccccceEEEccccccchHHHHHHH
Confidence            4679999999999999987432  233889999999999999999887531   0000000000 00011111111    


Q ss_pred             HHHh----------------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcC
Q 037205          188 FRRL----------------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEME  247 (439)
Q Consensus       188 ~~~l----------------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~  247 (439)
                      ....                ....-+|++|+++..  .....|...+.......++|++|.... +.... .....+.+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~  190 (353)
T 1sxj_D          111 KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFK  190 (353)
T ss_dssp             HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECC
T ss_pred             HHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeC
Confidence            1110                124458999998643  333344333322334567777775442 11111 123478999


Q ss_pred             CCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205          248 ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       248 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~  293 (439)
                      +++.++....+...+.......  ..+....+++.++|.|..+..+
T Consensus       191 ~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~  234 (353)
T 1sxj_D          191 ALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGDLRRGITL  234 (353)
T ss_dssp             CCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence            9999999999888764332221  2567889999999999875443

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.64  E-value=4.7e-07  Score=87.35  Aligned_cols=179  Identities=12%  Similarity=0.086  Sum_probs=103.1

Q ss_pred             CCCCCcccccchHHHHHhhhc----------cCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205          111 DNKSQLVGVESRVEEIESLLS----------VESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD  177 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~  177 (439)
                      ..-.+++|.+..++.|.+.+.          ......+-|.|+|++|+|||+||+.+++.... |+  ....+.....+.
T Consensus        15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~   94 (322)
T 3eie_A           15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE   94 (322)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGG
T ss_pred             CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccch
Confidence            334679999999999988772          11222467899999999999999999887543 21  111111110000


Q ss_pred             CCCCCcHHH-HHHHhccCCceEEecCCCCHH-------------HHHHHhc---CCCCCCCCcEEEEEeCchHH-----H
Q 037205          178 ENAIPGIDL-NFRRLSRMKVLIFFYDVTCFS-------------QLESLMG---SLDWLTPVSRIILTTRNKQV-----L  235 (439)
Q Consensus       178 ~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~---~~~~~~~gs~IiiTTR~~~v-----~  235 (439)
                      .  ...... +...-...+.+|+||+++...             ....++.   .......+..||.||..+..     .
T Consensus        95 ~--~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~  172 (322)
T 3eie_A           95 S--EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR  172 (322)
T ss_dssp             H--HHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHH
T ss_pred             H--HHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHH
Confidence            0  001111 122223466899999996321             1222222   11122345566667765432     2


Q ss_pred             HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC-cHHHHHHHH
Q 037205          236 RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV-PLALKVLGC  295 (439)
Q Consensus       236 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g~  295 (439)
                      .  .....+.++..+.++-.+++..++.......  .......+++.+.|. +-.|..+..
T Consensus       173 ~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di~~l~~  229 (322)
T 3eie_A          173 R--RFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDIAVVVK  229 (322)
T ss_dssp             H--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred             c--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            2  2456788999999999999988774332211  244567788888774 444554443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.60  E-value=2.9e-07  Score=92.78  Aligned_cols=175  Identities=11%  Similarity=0.147  Sum_probs=101.9

Q ss_pred             CCCCCcc-cccchH--HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----HHHHHHHHHh
Q 037205          111 DNKSQLV-GVESRV--EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL----LATKLISNLL  175 (439)
Q Consensus       111 ~~~~~~v-Gr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----~~~~ll~~l~  175 (439)
                      ....+|| |.....  ..+......... ...+.|+|++|+||||||+.+++....        ++    +...+...+.
T Consensus       102 ~tfd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~  180 (440)
T 2z4s_A          102 YTFENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMK  180 (440)
T ss_dssp             CSGGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHH
T ss_pred             CChhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHH
Confidence            3445666 654433  333333332222 667899999999999999999987642        11    2223333332


Q ss_pred             cCCCCCCcHHHHHHHhccCCceEEecCCCCHH----HHHHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCC
Q 037205          176 KDENAIPGIDLNFRRLSRMKVLIFFYDVTCFS----QLESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVS  241 (439)
Q Consensus       176 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~  241 (439)
                      ..     ....+...+..+.-+|+|||++...    ..+.+...+.. ...|..||+||.+.         .+...+...
T Consensus       181 ~~-----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g  255 (440)
T 2z4s_A          181 EG-----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG  255 (440)
T ss_dssp             TT-----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSS
T ss_pred             cc-----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCC
Confidence            21     2233444444467899999995321    22223222110 13567888888763         223333334


Q ss_pred             eEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205          242 KIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       242 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~  293 (439)
                      ..+.+++++.++-.+++.+.+.......  ..+....++..+.|.+-.+.-+
T Consensus       256 ~~i~l~~p~~e~r~~iL~~~~~~~~~~i--~~e~l~~la~~~~gn~R~l~~~  305 (440)
T 2z4s_A          256 LVAKLEPPDEETRKSIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLRGA  305 (440)
T ss_dssp             BCCBCCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHCCSCHHHHHHH
T ss_pred             eEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHH
Confidence            5788999999999999988764322111  1345677888999988765433

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.55  E-value=1.1e-06  Score=83.58  Aligned_cols=178  Identities=18%  Similarity=0.172  Sum_probs=100.4

Q ss_pred             CCCCCcccccchHHHHHhhhccC----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCC
Q 037205          111 DNKSQLVGVESRVEEIESLLSVE----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDEN  179 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~  179 (439)
                      ..-.+++|.+..++.+.+.+...          ....+.+.|+|++|+||||||+.+++.... |+...  ...+.... 
T Consensus        18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~--~~~l~~~~-   94 (297)
T 3b9p_A           18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNIS--AASLTSKY-   94 (297)
T ss_dssp             CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE--STTTSSSS-
T ss_pred             CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee--HHHHhhcc-
Confidence            34467999999999998876320          123467899999999999999999876542 11000  00000000 


Q ss_pred             CCCc---HH-HHHHHhccCCceEEecCCCCH-------------HHHHHHh---cCCCC--CCCCcEEEEEeCchH----
Q 037205          180 AIPG---ID-LNFRRLSRMKVLIFFYDVTCF-------------SQLESLM---GSLDW--LTPVSRIILTTRNKQ----  233 (439)
Q Consensus       180 ~~~~---~~-~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~---~~~~~--~~~gs~IiiTTR~~~----  233 (439)
                      .-..   .. .+.......+.+|+||+++..             .....++   .....  .+.+..||.||..+.    
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~  174 (297)
T 3b9p_A           95 VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDE  174 (297)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCH
T ss_pred             cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCH
Confidence            0001   11 112222346789999999542             1111122   11111  123455666776542    


Q ss_pred             -HHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHHH
Q 037205          234 -VLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLGC  295 (439)
Q Consensus       234 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~  295 (439)
                       +...  ....+.++..+.++-..++...+.......  .......+++.+.|.+- ++..+..
T Consensus       175 ~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~la~~~~g~~~~~l~~l~~  234 (297)
T 3b9p_A          175 AALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALRRLAKITDGYSGSDLTALAK  234 (297)
T ss_dssp             HHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence             2332  346778888888888888877663322211  24567788899999876 5655543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.53  E-value=7.8e-07  Score=85.75  Aligned_cols=170  Identities=15%  Similarity=0.170  Sum_probs=96.1

Q ss_pred             CCCCCcc-cccc--hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HH----HHHHHHHHHhcC
Q 037205          111 DNKSQLV-GVES--RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YL----LATKLISNLLKD  177 (439)
Q Consensus       111 ~~~~~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~----~~~~ll~~l~~~  177 (439)
                      ....+|| |...  ....+...+.........+.|+|++|+||||||+.+++....      ++    +...+...+...
T Consensus         8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   87 (324)
T 1l8q_A            8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKG   87 (324)
T ss_dssp             CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHT
T ss_pred             CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcC
Confidence            3345566 5433  233444444433224567889999999999999999987742      11    222222222211


Q ss_pred             CCCCCcHHHHHHHhccCCceEEecCCCCHH----HHHHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCCeE
Q 037205          178 ENAIPGIDLNFRRLSRMKVLIFFYDVTCFS----QLESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKI  243 (439)
Q Consensus       178 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~  243 (439)
                           ....+...+. +..+|+||+++...    ..+.+...+.. ...|..||+||.+.         .+...+.....
T Consensus        88 -----~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~  161 (324)
T 1l8q_A           88 -----TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL  161 (324)
T ss_dssp             -----CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred             -----cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence                 1222233332 46799999995432    12222221110 12456788887633         22223333467


Q ss_pred             EEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          244 YEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       244 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      +++++ +.++..+++...+.......  ..+....+++.+ |.+-.+
T Consensus       162 i~l~~-~~~e~~~il~~~~~~~~~~l--~~~~l~~l~~~~-g~~r~l  204 (324)
T 1l8q_A          162 VEIEL-DNKTRFKIIKEKLKEFNLEL--RKEVIDYLLENT-KNVREI  204 (324)
T ss_dssp             EECCC-CHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHC-SSHHHH
T ss_pred             EEeCC-CHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhC-CCHHHH
Confidence            89999 99999999988774333222  256677888888 776543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.51  E-value=4.5e-07  Score=86.88  Aligned_cols=145  Identities=12%  Similarity=0.029  Sum_probs=91.5

Q ss_pred             CcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----------H------------HHHHH
Q 037205          115 QLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISR-----------Y------------LLATK  169 (439)
Q Consensus       115 ~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f------------~~~~~  169 (439)
                      .+.||+.++++|...|..  .....+.+.|+|++|+|||++++.+++.+..           +            .+...
T Consensus        21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~  100 (318)
T 3te6_A           21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK  100 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence            389999999999988764  3456778899999999999999999998852           1            15566


Q ss_pred             HHHHHhcCCCCC-CcHHHHHHH---h---ccCCceEEecCCCCHH---HHHHHhcCCCCCCCCc--EEEEEeCch---H-
Q 037205          170 LISNLLKDENAI-PGIDLNFRR---L---SRMKVLIFFYDVTCFS---QLESLMGSLDWLTPVS--RIILTTRNK---Q-  233 (439)
Q Consensus       170 ll~~l~~~~~~~-~~~~~l~~~---l---~~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs--~IiiTTR~~---~-  233 (439)
                      ++.++.+..... .....+.+.   +   .+++++++||+++...   .+..+.....  ..++  .||.++...   . 
T Consensus       101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~  178 (318)
T 3te6_A          101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--SKNSKLSIICVGGHNVTIRE  178 (318)
T ss_dssp             HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--CSSCCEEEEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc--ccCCcEEEEEEecCcccchh
Confidence            777775543211 123333332   2   3467899999997642   2333322100  1222  233334322   1 


Q ss_pred             H-----HHhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          234 V-----LRNWGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       234 v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                      .     ...++ ...+.+++++.+|-.+++..++
T Consensus       179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl  211 (318)
T 3te6_A          179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL  211 (318)
T ss_dssp             HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred             hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence            1     12221 2578999999999999998766

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.50  E-value=7.7e-07  Score=89.76  Aligned_cols=181  Identities=14%  Similarity=0.160  Sum_probs=105.4

Q ss_pred             CCCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHH-hH-HH--HHHHHHHHHhc
Q 037205          111 DNKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKI-SR-YL--LATKLISNLLK  176 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~-f~--~~~~ll~~l~~  176 (439)
                      ..-.+++|.+..++.|.+.+..          .....+.|.|+|++|+|||+||+.+++.. .. |+  ....+.....+
T Consensus       131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g  210 (444)
T 2zan_A          131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG  210 (444)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--------
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcc
Confidence            3446799999999988876621          11234688999999999999999999876 22 21  00111111111


Q ss_pred             CCCCCCcHHHHHHHh-ccCCceEEecCCCCH-------------HHHHHHhcCCCCC---CCCcEEEEEeCchHHHHh--
Q 037205          177 DENAIPGIDLNFRRL-SRMKVLIFFYDVTCF-------------SQLESLMGSLDWL---TPVSRIILTTRNKQVLRN--  237 (439)
Q Consensus       177 ~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~---~~gs~IiiTTR~~~v~~~--  237 (439)
                      .  .......+.... ...+.+|+||+++..             .....++..+...   ..+..||.||..+.....  
T Consensus       211 ~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al  288 (444)
T 2zan_A          211 E--SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI  288 (444)
T ss_dssp             ---CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHH
T ss_pred             h--HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHH
Confidence            1  111223333322 356789999999754             1234455544332   345666767765422111  


Q ss_pred             -cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC-cHHHHHHHH
Q 037205          238 -WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV-PLALKVLGC  295 (439)
Q Consensus       238 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g~  295 (439)
                       -.....+.++..+.++-..+|..++.......  .......+++.+.|. +-.|..+..
T Consensus       289 ~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~~  346 (444)
T 2zan_A          289 RRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISIIVR  346 (444)
T ss_dssp             HTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence             13446788999999999998888763322111  234567888888885 434554443

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.49  E-value=1.5e-06  Score=85.98  Aligned_cols=180  Identities=16%  Similarity=0.143  Sum_probs=99.4

Q ss_pred             CCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205          112 NKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE  178 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~  178 (439)
                      .-.+++|.+..++.|...+..          .....+.|.|+|.+|+|||+||+.+++.... |+  ....+.....+. 
T Consensus       113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~-  191 (389)
T 3vfd_A          113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGE-  191 (389)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--------
T ss_pred             ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccch-
Confidence            346799999999999987721          1122467899999999999999999877543 11  000000000000 


Q ss_pred             CCCCcHHHHHH-HhccCCceEEecCCCCH-------------HHHHHHhcCC----CCCCCCcEEEEEeCchHHHHh---
Q 037205          179 NAIPGIDLNFR-RLSRMKVLIFFYDVTCF-------------SQLESLMGSL----DWLTPVSRIILTTRNKQVLRN---  237 (439)
Q Consensus       179 ~~~~~~~~l~~-~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~----~~~~~gs~IiiTTR~~~v~~~---  237 (439)
                       .......+.. .-...+.+|+||+++..             .....++..+    ........||.||.....+..   
T Consensus       192 -~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~  270 (389)
T 3vfd_A          192 -GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVL  270 (389)
T ss_dssp             -CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHH
T ss_pred             -HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHH
Confidence             0001111222 22345679999999643             1111222111    111223455656654322111   


Q ss_pred             cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHHH
Q 037205          238 WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLGC  295 (439)
Q Consensus       238 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~  295 (439)
                      -.....+.++..+.++-.+++...+.......  ..+....+++.+.|..- +|..+..
T Consensus       271 ~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~~l~~L~~  327 (389)
T 3vfd_A          271 RRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGSDLTALAK  327 (389)
T ss_dssp             TTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             cCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            12345788999999999999987764332222  24567788899988654 5655544

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.49  E-value=7.9e-07  Score=87.02  Aligned_cols=177  Identities=12%  Similarity=0.111  Sum_probs=101.7

Q ss_pred             CCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205          112 NKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE  178 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~  178 (439)
                      .-.+++|.+..++.|.+.+..          .....+-|.|+|++|+|||+||+.+++.... |+  ....+.....+  
T Consensus        49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g--  126 (355)
T 2qp9_X           49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG--  126 (355)
T ss_dssp             CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC----
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcc--
Confidence            346799999999999887621          1122356889999999999999999987654 22  11111111000  


Q ss_pred             CCCC-cHHHH-HHHhccCCceEEecCCCCHH-------------HHHHHhcCC---CCCCCCcEEEEEeCchH-----HH
Q 037205          179 NAIP-GIDLN-FRRLSRMKVLIFFYDVTCFS-------------QLESLMGSL---DWLTPVSRIILTTRNKQ-----VL  235 (439)
Q Consensus       179 ~~~~-~~~~l-~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~---~~~~~gs~IiiTTR~~~-----v~  235 (439)
                       ... ....+ .......+.+|+||+++...             ....++..+   .....+..||.||..+.     +.
T Consensus       127 -~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~  205 (355)
T 2qp9_X          127 -ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR  205 (355)
T ss_dssp             --CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHH
T ss_pred             -hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHH
Confidence             000 11222 22223467899999996431             122222221   11123455666776442     22


Q ss_pred             HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC-cHHHHHHHH
Q 037205          236 RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV-PLALKVLGC  295 (439)
Q Consensus       236 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g~  295 (439)
                      .  .....+.++..+.++-.+++..++.......  .......+++.+.|. +-.|..+..
T Consensus       206 r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l~~  262 (355)
T 2qp9_X          206 R--RFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVVVK  262 (355)
T ss_dssp             H--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             c--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            2  3457788999999999999988764322111  144567888888884 444555443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.47  E-value=1.9e-06  Score=83.07  Aligned_cols=178  Identities=13%  Similarity=0.134  Sum_probs=100.3

Q ss_pred             CCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhcCCC
Q 037205          112 NKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLKDEN  179 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~~~~  179 (439)
                      .-.+++|.+..++.|.+.+..          .....+.|.|+|++|+|||+||+.+++....  |+...  ...+.....
T Consensus        10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~--~~~l~~~~~   87 (322)
T 1xwi_A           10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS--SSDLVSKWL   87 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE--CCSSCCSSC
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE--hHHHHhhhh
Confidence            346788999888888875521          1123467899999999999999999987621  21000  000000000


Q ss_pred             CCC--cHHHHHH-HhccCCceEEecCCCCH-------------HHHHHHhcCCC---CCCCCcEEEEEeCchH-----HH
Q 037205          180 AIP--GIDLNFR-RLSRMKVLIFFYDVTCF-------------SQLESLMGSLD---WLTPVSRIILTTRNKQ-----VL  235 (439)
Q Consensus       180 ~~~--~~~~l~~-~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~---~~~~gs~IiiTTR~~~-----v~  235 (439)
                      ...  ....+.. .-..++.+|+||+++..             .....++..+.   ....+..||.||..+.     +.
T Consensus        88 g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~  167 (322)
T 1xwi_A           88 GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIR  167 (322)
T ss_dssp             CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHH
Confidence            000  1122222 22356789999999754             11222222211   1123455565665432     22


Q ss_pred             HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc-HHHHHHHH
Q 037205          236 RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP-LALKVLGC  295 (439)
Q Consensus       236 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g~  295 (439)
                      .  .....+.++..+.++-.+++..+........  .......+++.+.|.. -.|..+..
T Consensus       168 r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~~  224 (322)
T 1xwi_A          168 R--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIVR  224 (322)
T ss_dssp             H--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             h--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            2  3456788999999999999987763322111  2455778888888874 34555544

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.45  E-value=1.3e-06  Score=83.32  Aligned_cols=173  Identities=14%  Similarity=0.210  Sum_probs=100.2

Q ss_pred             CCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205          112 NKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD  177 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~  177 (439)
                      .-.+++|.+..++.|.+.+..           +-...+.|.|+|++|+|||+||+.+++.... |+  ....+.....+.
T Consensus        13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~   92 (301)
T 3cf0_A           13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE   92 (301)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTT
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCc
Confidence            345689999988888877642           1234567899999999999999999987654 22  222333333222


Q ss_pred             CCCCCcHHHHHHHhccCCceEEecCCCCHHH----------------HHHHhcCCCC--CCCCcEEEEEeCchHHHHh--
Q 037205          178 ENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQ----------------LESLMGSLDW--LTPVSRIILTTRNKQVLRN--  237 (439)
Q Consensus       178 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~gs~IiiTTR~~~v~~~--  237 (439)
                      .. ......+.......+.+|+||+++....                ...++..+..  ...+..||.||..+.....  
T Consensus        93 ~~-~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al  171 (301)
T 3cf0_A           93 SE-ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI  171 (301)
T ss_dssp             CT-THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGG
T ss_pred             hH-HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHH
Confidence            11 0112222333345678999999974211                1222222111  1234567777765533211  


Q ss_pred             c---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCC-CcchHHHHHHHHHHhCCCcHH
Q 037205          238 W---GVSKIYEMEALEYHHALELFSRHAFKRNHP-DVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       238 ~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      .   .....+.++.++.++-.+++....-..... ...    ...++..+.|.|-+
T Consensus       172 ~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~  223 (301)
T 3cf0_A          172 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA  223 (301)
T ss_dssp             GSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred             hcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence            1   244678999999999888887766332211 111    23455667777654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.44  E-value=1.2e-06  Score=88.28  Aligned_cols=165  Identities=15%  Similarity=0.219  Sum_probs=97.7

Q ss_pred             CCCcccccchH---HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHHH
Q 037205          113 KSQLVGVESRV---EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLNF  188 (439)
Q Consensus       113 ~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l~  188 (439)
                      ...+||.+..+   ..+...+..  ...+.+.|+|++|+||||||+.+++.... |+          .-.........++
T Consensus        25 l~~ivGq~~~~~~~~~L~~~i~~--~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~----------~l~a~~~~~~~ir   92 (447)
T 3pvs_A           25 LAQYIGQQHLLAAGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYANADVE----------RISAVTSGVKEIR   92 (447)
T ss_dssp             TTTCCSCHHHHSTTSHHHHHHHH--TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE----------EEETTTCCHHHHH
T ss_pred             HHHhCCcHHHHhchHHHHHHHHc--CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE----------EEEeccCCHHHHH
Confidence            46799998887   677777763  34578899999999999999999877542 11          0000000111111


Q ss_pred             H--------HhccCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEE-EEeCchHH---HHhcCCCeEEEcCCCCHHHH
Q 037205          189 R--------RLSRMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRII-LTTRNKQV---LRNWGVSKIYEMEALEYHHA  254 (439)
Q Consensus       189 ~--------~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Ii-iTTR~~~v---~~~~~~~~~~~l~~L~~~ea  254 (439)
                      .        ...+++.+|+||+++...  +.+.|+..+..  ....+| .||.+...   .........+.+.+++.++.
T Consensus        93 ~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi  170 (447)
T 3pvs_A           93 EAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDI  170 (447)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHH
T ss_pred             HHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHH
Confidence            1        123567899999997543  33344433331  123344 35555421   11122345889999999999


Q ss_pred             HHHHHHhhhcCC-----CCCcchHHHHHHHHHHhCCCcHHHH
Q 037205          255 LELFSRHAFKRN-----HPDVGYEKLSSNVMKYVQGVPLALK  291 (439)
Q Consensus       255 ~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~GlPLal~  291 (439)
                      .+++.+.+-...     ....-..+....+++.++|.+-.+.
T Consensus       171 ~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll  212 (447)
T 3pvs_A          171 EQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL  212 (447)
T ss_dssp             HHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence            999887764311     1111235667788888888877554

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.43  E-value=1.9e-06  Score=84.31  Aligned_cols=175  Identities=13%  Similarity=0.057  Sum_probs=98.6

Q ss_pred             CCCcccccchHHHHHh---hhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH----------------HHHHH
Q 037205          113 KSQLVGVESRVEEIES---LLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YL----------------LATKL  170 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~---~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~----------------~~~~l  170 (439)
                      ...|+|++..++.+..   .+..+....+.+.|+|++|+|||+||+.+++....   |+                ...+.
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQA  122 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHH
T ss_pred             hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHH
Confidence            5679999988776544   33333323468899999999999999999987642   10                11111


Q ss_pred             HHHHhc---------------------CCC-------C-C-CcHHHHHHHh---------ccC----CceEEecCCCCH-
Q 037205          171 ISNLLK---------------------DEN-------A-I-PGIDLNFRRL---------SRM----KVLIFFYDVTCF-  206 (439)
Q Consensus       171 l~~l~~---------------------~~~-------~-~-~~~~~l~~~l---------~~~----~~LlVlDdv~~~-  206 (439)
                      +....+                     ...       . . .....++..+         .++    +.+|+||+++.. 
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~  202 (368)
T 3uk6_A          123 FRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD  202 (368)
T ss_dssp             HHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB
T ss_pred             HHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC
Confidence            111100                     000       0 0 0011122111         122    359999999653 


Q ss_pred             -HHHHHHhcCCCCCCCCcEEEEEeCc-----------------hHHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCC
Q 037205          207 -SQLESLMGSLDWLTPVSRIILTTRN-----------------KQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHP  268 (439)
Q Consensus       207 -~~~~~l~~~~~~~~~gs~IiiTTR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~  268 (439)
                       +....|...+...... .++++|..                 +.+...   ...+.+++++.++..+++...+......
T Consensus       203 ~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~~~~~  278 (368)
T 3uk6_A          203 IESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRCEEEDVE  278 (368)
T ss_dssp             HHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence             3344444444332223 34444431                 222222   3457999999999999998877443322


Q ss_pred             CcchHHHHHHHHHHhC-CCcHHHHHH
Q 037205          269 DVGYEKLSSNVMKYVQ-GVPLALKVL  293 (439)
Q Consensus       269 ~~~~~~~~~~i~~~~~-GlPLal~~~  293 (439)
                        -..+....+++.+. |.|-.+..+
T Consensus       279 --~~~~~l~~l~~~~~~G~~r~~~~l  302 (368)
T 3uk6_A          279 --MSEDAYTVLTRIGLETSLRYAIQL  302 (368)
T ss_dssp             --BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             --CCHHHHHHHHHHhcCCCHHHHHHH
Confidence              22566788899997 887765443

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.37  E-value=2.3e-06  Score=83.30  Aligned_cols=177  Identities=12%  Similarity=0.077  Sum_probs=101.2

Q ss_pred             CCcccccchHHHHHhhh-ccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHH------HHH------
Q 037205          114 SQLVGVESRVEEIESLL-SVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLI------SNL------  174 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll------~~l------  174 (439)
                      .+++|.+..++.+.+.+ ..+. ... +.|+|++|+||||+|+.++..+..      ++....+.      ..+      
T Consensus        14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~   91 (354)
T 1sxj_E           14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP   91 (354)
T ss_dssp             GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred             HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence            56899999999999988 5332 223 899999999999999998875311      11000000      000      


Q ss_pred             -----hcCCCCCCc---HH-HHHHHh--------------ccCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEe
Q 037205          175 -----LKDENAIPG---ID-LNFRRL--------------SRMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTT  229 (439)
Q Consensus       175 -----~~~~~~~~~---~~-~l~~~l--------------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTT  229 (439)
                           .........   .. .+....              ..++-++|||++...+  ..+.+...+.....+..+|++|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t  171 (354)
T 1sxj_E           92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVC  171 (354)
T ss_dssp             SEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEE
T ss_pred             ceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence                 000000001   11 111111              2255699999997532  2333333322223567788777


Q ss_pred             CchH-HHHh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcch-HHHHHHHHHHhCCCcHHHHHHH
Q 037205          230 RNKQ-VLRN-WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGY-EKLSSNVMKYVQGVPLALKVLG  294 (439)
Q Consensus       230 R~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~GlPLal~~~g  294 (439)
                      .+.. +... ......+++++++.++..+.+...+......  -. .+.+..+++.++|.+-.+..+.
T Consensus       172 ~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l  237 (354)
T 1sxj_E          172 DSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLML  237 (354)
T ss_dssp             SCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            6532 2111 1234789999999999999998876432211  11 3557788899999987655443

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.37  E-value=2.1e-06  Score=81.96  Aligned_cols=144  Identities=16%  Similarity=0.171  Sum_probs=85.6

Q ss_pred             CcccccchHHHHHhhhcc-------------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HHHHHHHHHH
Q 037205          115 QLVGVESRVEEIESLLSV-------------ESKDVYALGIWGIGGIGKTTIARATFDKISR--------YLLATKLISN  173 (439)
Q Consensus       115 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~~~~~ll~~  173 (439)
                      .++|.+..++.|.+++..             .......+.|+|++|+|||+||+.+++.+..        |+...  ...
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~--~~~  109 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT--RDD  109 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC--GGG
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc--HHH
Confidence            378888888887765531             1234557899999999999999998877642        00000  000


Q ss_pred             HhcCCCCCC-cHHHHHHHhc-cCCceEEecCCC-----------CHHHHHHHhcCCCCCCCCcEEEEEeCchH-------
Q 037205          174 LLKDENAIP-GIDLNFRRLS-RMKVLIFFYDVT-----------CFSQLESLMGSLDWLTPVSRIILTTRNKQ-------  233 (439)
Q Consensus       174 l~~~~~~~~-~~~~l~~~l~-~~~~LlVlDdv~-----------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-------  233 (439)
                      +...  -.. ....+...+. .+..+|+||+++           .......|...+.....+..+|.||....       
T Consensus       110 l~~~--~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~  187 (309)
T 3syl_A          110 LVGQ--YIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQS  187 (309)
T ss_dssp             TCCS--STTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHH
T ss_pred             hhhh--cccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhh
Confidence            0000  000 1112222221 245699999997           33444555544433345677888876432       


Q ss_pred             ---HHHhcCCCeEEEcCCCCHHHHHHHHHHhhhc
Q 037205          234 ---VLRNWGVSKIYEMEALEYHHALELFSRHAFK  264 (439)
Q Consensus       234 ---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~  264 (439)
                         +...  ....+.+++++.++-.+++...+..
T Consensus       188 ~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~  219 (309)
T 3syl_A          188 NPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD  219 (309)
T ss_dssp             STTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence               2222  2368899999999999999887643

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.34  E-value=9.6e-07  Score=85.02  Aligned_cols=166  Identities=14%  Similarity=0.034  Sum_probs=97.5

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHH----H
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDL----N  187 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~----l  187 (439)
                      ..+++|.+..++.+.+++..+ ....++.++|++|+|||++|+.+++.... ++       .+.  .... ....    +
T Consensus        25 ~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~-------~i~--~~~~-~~~~i~~~~   93 (324)
T 3u61_B           25 IDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNADMM-------FVN--GSDC-KIDFVRGPL   93 (324)
T ss_dssp             TTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE-------EEE--TTTC-CHHHHHTHH
T ss_pred             HHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE-------EEc--cccc-CHHHHHHHH
Confidence            467999999999999998743 23457788899999999999999877532 11       000  0001 1111    2


Q ss_pred             HHHhc-----cCCceEEecCCCCHH---HHHHHhcCCCCCCCCcEEEEEeCchHHHH-h-cCCCeEEEcCCCCHHHHHHH
Q 037205          188 FRRLS-----RMKVLIFFYDVTCFS---QLESLMGSLDWLTPVSRIILTTRNKQVLR-N-WGVSKIYEMEALEYHHALEL  257 (439)
Q Consensus       188 ~~~l~-----~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~-~~~~~~~~l~~L~~~ea~~L  257 (439)
                      .....     +++.++++|+++...   ..+.|...+.....+.++|+||....-.. . ......+++++++.++-.++
T Consensus        94 ~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~i  173 (324)
T 3u61_B           94 TNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEM  173 (324)
T ss_dssp             HHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHH
T ss_pred             HHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHH
Confidence            22222     267899999998654   34444433322235678888887543210 0 01125789999998874333


Q ss_pred             H-------HHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          258 F-------SRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       258 f-------~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      +       ...+.......+ ..+....+++.++|.+-.+
T Consensus       174 l~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~gd~R~a  212 (324)
T 3u61_B          174 MKQMIRRLTEICKHEGIAIA-DMKVVAALVKKNFPDFRKT  212 (324)
T ss_dssp             HHHHHHHHHHHHHHHTCCBS-CHHHHHHHHHHTCSCTTHH
T ss_pred             HHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHhCCCCHHHH
Confidence            2       222222111111 1266778888898876643

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.22  E-value=2.9e-05  Score=76.32  Aligned_cols=172  Identities=18%  Similarity=0.234  Sum_probs=98.2

Q ss_pred             CCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCC
Q 037205          113 KSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENA  180 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~  180 (439)
                      -.++.|.+..+++|.+.+..           +-...+-|.++|+||.|||.||+++++.... |+...  .+.+......
T Consensus       147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~--~s~l~sk~vG  224 (405)
T 4b4t_J          147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS--GAELVQKYIG  224 (405)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE--GGGGSCSSTT
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE--hHHhhccccc
Confidence            36688999999998876532           2234577899999999999999999988654 21000  0000000000


Q ss_pred             CC--cHHH-HHHHhccCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHH-----
Q 037205          181 IP--GIDL-NFRRLSRMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQV-----  234 (439)
Q Consensus       181 ~~--~~~~-l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v-----  234 (439)
                      ..  .+.. ....-...+++|++|+++...                .+..++..+..+  ..+-.||.||..+..     
T Consensus       225 ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAl  304 (405)
T 4b4t_J          225 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPAL  304 (405)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHH
T ss_pred             hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhH
Confidence            00  1111 122224578999999996320                123333322222  234455667764433     


Q ss_pred             HHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          235 LRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       235 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      ...-..+..+.++..+.++-.++|..+.-+... ..+.  ....+++.+.|+--|
T Consensus       305 lRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dv--dl~~lA~~t~G~SGA  356 (405)
T 4b4t_J          305 LRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGI--NLRKVAEKMNGCSGA  356 (405)
T ss_dssp             HSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSC--CHHHHHHHCCSCCHH
T ss_pred             cCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccC--CHHHHHHHCCCCCHH
Confidence            222245678999999999999999877633221 1111  145677888876544

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.19  E-value=1.5e-05  Score=77.23  Aligned_cols=167  Identities=13%  Similarity=0.141  Sum_probs=99.1

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhc-CCCCCCcHHHHHH-
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLK-DENAIPGIDLNFR-  189 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~-~~~~~~~~~~l~~-  189 (439)
                      ..++|.+..++.|...+..+  +.+.+.++|++|+||||+|+.++..+..  +-      ..+.. ...+......+++ 
T Consensus        25 ~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~------~~~~~~~~~~~~~~~~ir~~   96 (340)
T 1sxj_C           25 DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYS------NMVLELNASDDRGIDVVRNQ   96 (340)
T ss_dssp             GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH------HHEEEECTTSCCSHHHHHTH
T ss_pred             HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCcc------ceEEEEcCcccccHHHHHHH
Confidence            55789888888888888743  3334889999999999999998877531  10      00111 1111112222221 


Q ss_pred             ---Hh------ccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCchH-HHHh-cCCCeEEEcCCCCHHHHHH
Q 037205          190 ---RL------SRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIYEMEALEYHHALE  256 (439)
Q Consensus       190 ---~l------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~  256 (439)
                         ..      .+.+-++|+|+++.  ....+.|...+......+++|++|.... +... ......+.+.+++.++..+
T Consensus        97 i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~  176 (340)
T 1sxj_C           97 IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIER  176 (340)
T ss_dssp             HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred             HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHH
Confidence               11      12467889999853  2333344333322235567777765432 1111 1223578999999999988


Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          257 LFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       257 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      .+...+-.....-  ..+....+++.++|.+--+
T Consensus       177 ~l~~~~~~~~~~i--~~~~~~~i~~~s~G~~r~~  208 (340)
T 1sxj_C          177 RIANVLVHEKLKL--SPNAEKALIELSNGDMRRV  208 (340)
T ss_dssp             HHHHHHHTTTCCB--CHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence            8877663222111  2456788899999988754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.17  E-value=3.4e-05  Score=76.99  Aligned_cols=170  Identities=16%  Similarity=0.232  Sum_probs=96.3

Q ss_pred             CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCC
Q 037205          114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAI  181 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~  181 (439)
                      .++.|.+..+++|.+.+..           +-...+-|.++|++|.|||.||+++++.... |+...  ...+.......
T Consensus       209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs--~s~L~sk~vGe  286 (467)
T 4b4t_H          209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI--GSELVQKYVGE  286 (467)
T ss_dssp             SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE--GGGGCCCSSSH
T ss_pred             HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE--hHHhhcccCCH
Confidence            5789999999999875421           2245778999999999999999999988654 21000  00000000000


Q ss_pred             C--cH-HHHHHHhccCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHH-----H
Q 037205          182 P--GI-DLNFRRLSRMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQV-----L  235 (439)
Q Consensus       182 ~--~~-~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v-----~  235 (439)
                      .  .+ ......-...+++|++|+++...                .+..++..+..+  ..+..||.||..+..     .
T Consensus       287 sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALl  366 (467)
T 4b4t_H          287 GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALL  366 (467)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHH
T ss_pred             HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhh
Confidence            0  11 11222234578999999995320                122222222211  223445667754433     2


Q ss_pred             HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH
Q 037205          236 RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL  288 (439)
Q Consensus       236 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL  288 (439)
                      ..-..+..+.++..+.++-.++|..+.-.... ..+.  ....+++.+.|+--
T Consensus       367 RpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dv--dl~~LA~~T~GfSG  416 (467)
T 4b4t_H          367 RPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGI--RWELISRLCPNSTG  416 (467)
T ss_dssp             STTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSC--CHHHHHHHCCSCCH
T ss_pred             ccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCC--CHHHHHHHCCCCCH
Confidence            22245678899999999999999877633221 1111  14567788888643

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.15  E-value=0.00011  Score=70.99  Aligned_cols=246  Identities=15%  Similarity=0.171  Sum_probs=127.0

Q ss_pred             CCcccccchHHHHHhhhccC---CCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhc-CCCCCCcHHHHHH
Q 037205          114 SQLVGVESRVEEIESLLSVE---SKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK-DENAIPGIDLNFR  189 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~-~~~~~~~~~~l~~  189 (439)
                      ..++|.+..++.+...+..+   ......++|+|++|+||||||+.+++....         .+.. ..........+..
T Consensus        25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~---------~~~~~sg~~~~~~~~l~~   95 (334)
T 1in4_A           25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT---------NIHVTSGPVLVKQGDMAA   95 (334)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC---------CEEEEETTTCCSHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---------CEEEEechHhcCHHHHHH
Confidence            56889888888877766532   223467899999999999999998876521         0000 0000111112222


Q ss_pred             Hhc--cCCceEEecCCCCH--HHHHHHhcCCCCC--------C----------CCcEEE-EEeCchHHHHhc--CCCeEE
Q 037205          190 RLS--RMKVLIFFYDVTCF--SQLESLMGSLDWL--------T----------PVSRII-LTTRNKQVLRNW--GVSKIY  244 (439)
Q Consensus       190 ~l~--~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~----------~gs~Ii-iTTR~~~v~~~~--~~~~~~  244 (439)
                      .+.  .++-++++|++...  ...+.+.......        +          +...++ .|++...+....  ......
T Consensus        96 ~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~  175 (334)
T 1in4_A           96 ILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIIL  175 (334)
T ss_dssp             HHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEE
T ss_pred             HHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCcee
Confidence            111  23457778887532  2222222111000        0          011222 344433221111  233468


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhh------cC---CCHHHHHHHHHHHhcC
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL------YK---REKEVWESAINKLQRI  315 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L------~~---~~~~~w~~~l~~l~~~  315 (439)
                      .+++.+.++-.+++.+.+-.....  -..+.+..|++.+.|.|-.+..+-..+      .+   -+.+.-+.++..+.. 
T Consensus       176 ~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~-  252 (334)
T 1in4_A          176 ELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI-  252 (334)
T ss_dssp             ECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTC-
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCC-
Confidence            899999999999998876332221  225678899999999997654333221      11   233444444444321 


Q ss_pred             CCccHHHHHHHhhcCCCHHhHHHHhcccccccc----------cCCCch---hHHHH-HHhhCCceEEccCCeEEecHHH
Q 037205          316 LYPSILEVLKISYDGLDNKEKNIFLGVACFFQV----------RIGFNL---EIGVS-VLVDKSLIVISNNNKITMHDLL  381 (439)
Q Consensus       316 ~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~~----------~~~~~~---~~~l~-~L~~~sLi~~~~~~~~~mHdlv  381 (439)
                                 ....|+...+..+..++-.+.+          ..+...   +..++ .|...+||+....|++-...-.
T Consensus       253 -----------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr~~~~~~~  321 (334)
T 1in4_A          253 -----------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTEKAY  321 (334)
T ss_dssp             -----------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHH
T ss_pred             -----------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCCeecccccHHhhHHHH
Confidence                       1123444444444333322221          111121   11222 7889999999877776554443


Q ss_pred             H
Q 037205          382 Q  382 (439)
Q Consensus       382 ~  382 (439)
                      +
T Consensus       322 ~  322 (334)
T 1in4_A          322 K  322 (334)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.13  E-value=2.8e-06  Score=86.51  Aligned_cols=176  Identities=16%  Similarity=0.194  Sum_probs=98.6

Q ss_pred             CCcccccchHHHHHhhhccC-----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          114 SQLVGVESRVEEIESLLSVE-----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      ..++|.+..+++|.+++...           ....+-|.|+|++|+|||+||+.+++.... |+  ....+.....+.. 
T Consensus       204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~-  282 (489)
T 3hu3_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES-  282 (489)
T ss_dssp             GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHH-
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchh-
Confidence            46899999999998877531           234567899999999999999999877543 22  1111111100000 


Q ss_pred             CCCcHHHHHHHhccCCceEEecCCCCH-------------HHHHHHhcCCCC--CCCCcEEEEEeCchHH-----HHhcC
Q 037205          180 AIPGIDLNFRRLSRMKVLIFFYDVTCF-------------SQLESLMGSLDW--LTPVSRIILTTRNKQV-----LRNWG  239 (439)
Q Consensus       180 ~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~gs~IiiTTR~~~v-----~~~~~  239 (439)
                      .......+.....+++.+|+||+++..             .....|+..+..  ...+.+||.||..+..     .....
T Consensus       283 ~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gR  362 (489)
T 3hu3_A          283 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR  362 (489)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTS
T ss_pred             HHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCc
Confidence            000112233334456789999999311             112222222111  1234566667665422     11113


Q ss_pred             CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC-cHHHHHH
Q 037205          240 VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV-PLALKVL  293 (439)
Q Consensus       240 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~  293 (439)
                      ....+.++..+.++-.+++..++.......   ......++..+.|. +-.|..+
T Consensus       363 f~~~i~i~~P~~~eR~~IL~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~L  414 (489)
T 3hu3_A          363 FDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGADLAAL  414 (489)
T ss_dssp             SCEEEECCCCCHHHHHHHHHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHHH
T ss_pred             CceEEEeCCCCHHHHHHHHHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHHH
Confidence            445789999999999999988763322111   11135566667765 4445444

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.08  E-value=3e-05  Score=77.33  Aligned_cols=173  Identities=18%  Similarity=0.236  Sum_probs=98.5

Q ss_pred             CCCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCC
Q 037205          111 DNKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDE  178 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~  178 (439)
                      ..-.++.|.+..+++|.+.+..           +-...+-|.+||+||.|||+||+++++.... |+...  .+.+....
T Consensus       178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~--~s~l~sk~  255 (437)
T 4b4t_L          178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP--ASGIVDKY  255 (437)
T ss_dssp             SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE--GGGTCCSS
T ss_pred             CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe--hhhhcccc
Confidence            3346788999999888876532           2234678999999999999999999988654 21000  00000000


Q ss_pred             CCCC--cHHH-HHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHh
Q 037205          179 NAIP--GIDL-NFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRN  237 (439)
Q Consensus       179 ~~~~--~~~~-l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~  237 (439)
                      ....  .+.. ....-...+++|++|+++..                ..+..|+..+..+  ..+..||.||..+..+..
T Consensus       256 ~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDp  335 (437)
T 4b4t_L          256 IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDP  335 (437)
T ss_dssp             SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCT
T ss_pred             chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCH
Confidence            0000  1111 12222457899999999631                0122333322211  234567777765544322


Q ss_pred             c-----CCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CCcchHHHHHHHHHHhCCCcHH
Q 037205          238 W-----GVSKIYEMEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       238 ~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      .     ..+..+.++..+.++-.++|..+.-+... ...+    ...+++.+.|+--|
T Consensus       336 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~sGA  389 (437)
T 4b4t_L          336 ALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFNGA  389 (437)
T ss_dssp             TTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCCHH
T ss_pred             HHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCCHH
Confidence            1     23567889988998888888877633221 1112    45677778776543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.07  E-value=1.1e-05  Score=80.28  Aligned_cols=171  Identities=15%  Similarity=0.191  Sum_probs=96.8

Q ss_pred             CCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCC
Q 037205          112 NKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDEN  179 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~  179 (439)
                      .-.++.|.+..+++|.+.+..           +-...+-|.+||+||.|||.||+++++.... |+...  ...+.....
T Consensus       179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~--~s~l~~~~v  256 (434)
T 4b4t_M          179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA--APQLVQMYI  256 (434)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE--GGGGCSSCS
T ss_pred             ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe--hhhhhhccc
Confidence            346788999999998875421           2234678999999999999999999988654 11000  000000000


Q ss_pred             CCC--cHHHH-HHHhccCCceEEecCCCCH-------------H---HHHHHhcCCCCCC--CCcEEEEEeCchHHHHh-
Q 037205          180 AIP--GIDLN-FRRLSRMKVLIFFYDVTCF-------------S---QLESLMGSLDWLT--PVSRIILTTRNKQVLRN-  237 (439)
Q Consensus       180 ~~~--~~~~l-~~~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~-  237 (439)
                      ...  .+..+ ...-...+++|++|+++..             .   .+..|+..+..+.  .+-.||.||..+..+.. 
T Consensus       257 Gese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~A  336 (434)
T 4b4t_M          257 GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPA  336 (434)
T ss_dssp             SHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTT
T ss_pred             chHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHh
Confidence            000  11111 2222356899999998421             0   1223333333222  23455667765543322 


Q ss_pred             ----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CCcchHHHHHHHHHHhCCCcH
Q 037205          238 ----WGVSKIYEMEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYVQGVPL  288 (439)
Q Consensus       238 ----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPL  288 (439)
                          -..+..+.++..+.++-.++|..+.-+-.. ...+    ...+++.+.|+--
T Consensus       337 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~sG  388 (434)
T 4b4t_M          337 LLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFNG  388 (434)
T ss_dssp             TCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCCH
T ss_pred             HhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCCH
Confidence                134567889999999888888766533221 1112    4567778877643

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.07  E-value=2.6e-05  Score=77.64  Aligned_cols=168  Identities=17%  Similarity=0.253  Sum_probs=90.4

Q ss_pred             CCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCC
Q 037205          113 KSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENA  180 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~  180 (439)
                      -.++.|.+..+++|.+.+..           +-...+-|.++|+||+|||+||+++++.... |+...  ...+...  .
T Consensus       171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~--~~~l~~~--~  246 (428)
T 4b4t_K          171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN--GSEFVHK--Y  246 (428)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE--GGGTCCS--S
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe--cchhhcc--c
Confidence            36788999999888876532           2234677999999999999999999988654 21000  0000000  0


Q ss_pred             CC-c---H-HHHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCC--CCCCcEEEEEeCchHH---
Q 037205          181 IP-G---I-DLNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDW--LTPVSRIILTTRNKQV---  234 (439)
Q Consensus       181 ~~-~---~-~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~gs~IiiTTR~~~v---  234 (439)
                      .. .   + ..+...-...+++|++|+++..                ..+..|+..+..  ...+-.||.||..+..   
T Consensus       247 ~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~  326 (428)
T 4b4t_K          247 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDP  326 (428)
T ss_dssp             CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCH
T ss_pred             cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcCh
Confidence            00 1   1 1122222456899999998421                012233322221  1234456667764432   


Q ss_pred             --HHhcCCCeEEEcCCC-CHHHHHHHHHHhhhcCC-CCCcchHHHHHHHHHHhCCCcH
Q 037205          235 --LRNWGVSKIYEMEAL-EYHHALELFSRHAFKRN-HPDVGYEKLSSNVMKYVQGVPL  288 (439)
Q Consensus       235 --~~~~~~~~~~~l~~L-~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPL  288 (439)
                        ......+..+.++.+ +.++-..+|..+.-+.. .+..+    ...+++.+.|+--
T Consensus       327 AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~sg  380 (428)
T 4b4t_K          327 ALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLSG  380 (428)
T ss_dssp             HHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCCH
T ss_pred             hhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCCH
Confidence              222234456788755 45555566665553222 11212    4567777777643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=98.02  E-value=1.1e-06  Score=82.19  Aligned_cols=151  Identities=17%  Similarity=0.218  Sum_probs=83.4

Q ss_pred             CCCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205          111 DNKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD  177 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~  177 (439)
                      ....+++|.+..++.+.+.+..          +....+-+.|+|++|+|||+||+.+++.... |+  ....+.....+.
T Consensus         8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~   87 (268)
T 2r62_A            8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGL   87 (268)
T ss_dssp             CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSS
T ss_pred             CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcch
Confidence            3446799999998888886641          1112334789999999999999999887542 11  000000000000


Q ss_pred             CCCCCcHHHHHHHhccCCceEEecCCCCHH-----------------HHHHHhcCCCCCC---CCcEEEEEeCchHHHH-
Q 037205          178 ENAIPGIDLNFRRLSRMKVLIFFYDVTCFS-----------------QLESLMGSLDWLT---PVSRIILTTRNKQVLR-  236 (439)
Q Consensus       178 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~---~gs~IiiTTR~~~v~~-  236 (439)
                      . .......+.......+.+|+||+++...                 .+..++..+....   ....||.||....... 
T Consensus        88 ~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~  166 (268)
T 2r62_A           88 G-ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDP  166 (268)
T ss_dssp             C-SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCG
T ss_pred             H-HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCH
Confidence            0 0001122233333467899999995431                 1233333332221   1245666776543211 


Q ss_pred             ----hcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          237 ----NWGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       237 ----~~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                          .......+.++.++.++-.+++...+
T Consensus       167 ~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~  196 (268)
T 2r62_A          167 ALMRPGRFDRQVLVDKPDFNGRVEILKVHI  196 (268)
T ss_dssp             GGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred             hHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence                11233567888888888888887665

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.97  E-value=4.9e-05  Score=75.13  Aligned_cols=171  Identities=18%  Similarity=0.214  Sum_probs=95.7

Q ss_pred             CCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCC
Q 037205          112 NKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDEN  179 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~  179 (439)
                      .-.++.|.+..+++|.+.+..           +-...+-|.++|+||.|||.||+++++.... |+...  ...+.....
T Consensus       180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~--~s~l~sk~v  257 (437)
T 4b4t_I          180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV--GSELIQKYL  257 (437)
T ss_dssp             CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE--SGGGCCSSS
T ss_pred             cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE--HHHhhhccC
Confidence            336678899988888875532           2234678999999999999999999988654 21000  000000000


Q ss_pred             CCC--cHHHH-HHHhccCCceEEecCCCCH----------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHhc
Q 037205          180 AIP--GIDLN-FRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRNW  238 (439)
Q Consensus       180 ~~~--~~~~l-~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~  238 (439)
                      ...  .+..+ ...-...+++|++|+++..                ..+..++..+..+  ..+..||.||..+..+...
T Consensus       258 Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpA  337 (437)
T 4b4t_I          258 GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPA  337 (437)
T ss_dssp             SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTT
T ss_pred             chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHH
Confidence            000  11111 2222356899999998521                1122333222211  2344566677655443321


Q ss_pred             -----CCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CCcchHHHHHHHHHHhCCCcH
Q 037205          239 -----GVSKIYEMEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYVQGVPL  288 (439)
Q Consensus       239 -----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPL  288 (439)
                           ..+..+.++..+.++-.++|..+.-.-.. ...+    ...+++.+.|+-=
T Consensus       338 LlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfSG  389 (437)
T 4b4t_I          338 LIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLSG  389 (437)
T ss_dssp             SSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCCH
T ss_pred             HhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCCH
Confidence                 23457889988998888988877633221 1112    4567777877643

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.97  E-value=0.00018  Score=69.50  Aligned_cols=165  Identities=15%  Similarity=0.153  Sum_probs=96.8

Q ss_pred             chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----H------HHHHHHHHHHh------cCC--CCC
Q 037205          121 SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----Y------LLATKLISNLL------KDE--NAI  181 (439)
Q Consensus       121 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f------~~~~~ll~~l~------~~~--~~~  181 (439)
                      ...+.+.+.+..+ .-...+.++|++|+|||++|+.+++.+..     .      .....+.....      ...  ...
T Consensus         9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~   87 (334)
T 1a5t_A            9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNT   87 (334)
T ss_dssp             HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSS
T ss_pred             HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCC
Confidence            3445555555422 22457889999999999999998876531     0      00111111000      000  000


Q ss_pred             CcHH---HHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcCCC
Q 037205          182 PGID---LNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEAL  249 (439)
Q Consensus       182 ~~~~---~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L  249 (439)
                      ...+   .+.+.+.     +++-++|+|+++..  +..+.|+..+....+++.+|++|.++. +.... .....++++++
T Consensus        88 ~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~  167 (334)
T 1a5t_A           88 LGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPP  167 (334)
T ss_dssp             BCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred             CCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCC
Confidence            1233   3333332     45678999999743  344555555444445677777776553 22222 33468999999


Q ss_pred             CHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205          250 EYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL  293 (439)
Q Consensus       250 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~  293 (439)
                      +.++..+.+....    ..   ..+.+..+++.++|.|..+..+
T Consensus       168 ~~~~~~~~L~~~~----~~---~~~~~~~l~~~s~G~~r~a~~~  204 (334)
T 1a5t_A          168 PEQYAVTWLSREV----TM---SQDALLAALRLSAGSPGAALAL  204 (334)
T ss_dssp             CHHHHHHHHHHHC----CC---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred             CHHHHHHHHHHhc----CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence            9999999887764    11   1455678999999999866443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.97  E-value=3.1e-05  Score=71.79  Aligned_cols=172  Identities=14%  Similarity=0.147  Sum_probs=90.6

Q ss_pred             CCCCCcccccchHHHHHhhhcc---C-------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCC
Q 037205          111 DNKSQLVGVESRVEEIESLLSV---E-------SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDEN  179 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~  179 (439)
                      ..-.+++|.+..++++.+++..   .       ....+-+.|+|++|+||||||+.+++.... |+       .+....-
T Consensus         9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~-------~i~~~~~   81 (257)
T 1lv7_A            9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF-------TISGSDF   81 (257)
T ss_dssp             CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEE-------EECSCSS
T ss_pred             CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEE-------EEeHHHH
Confidence            3446789998887777665421   0       112345889999999999999999876532 11       0000000


Q ss_pred             -C--C-CcHH----HHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCC--CCCCcEEEEEeCchH
Q 037205          180 -A--I-PGID----LNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDW--LTPVSRIILTTRNKQ  233 (439)
Q Consensus       180 -~--~-~~~~----~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~gs~IiiTTR~~~  233 (439)
                       .  . ....    .+.......+.++++|+++..                ..+..++..+..  ...+..||.||..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~  161 (257)
T 1lv7_A           82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD  161 (257)
T ss_dssp             TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred             HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence             0  0 0111    222222345679999998321                112223221111  123456666776543


Q ss_pred             HH-Hhc----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCC-CcHHHHH
Q 037205          234 VL-RNW----GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQG-VPLALKV  292 (439)
Q Consensus       234 v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~  292 (439)
                      .. ...    .....+.++..+.++-.+++..+.-......+   .....++..+.| .+--|..
T Consensus       162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~  223 (257)
T 1lv7_A          162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLAN  223 (257)
T ss_dssp             TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHH
T ss_pred             hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHH
Confidence            22 111    23467888888888888888766522211111   113445666777 5544443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.95  E-value=2.8e-06  Score=92.63  Aligned_cols=142  Identities=12%  Similarity=0.132  Sum_probs=76.4

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----------HH--HHHHHHHHHhcCCC
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----------YL--LATKLISNLLKDEN  179 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~--~~~~ll~~l~~~~~  179 (439)
                      ...+|||+.++..+...|...  ..+.+.|+|.+|+||||||+.+++.+..           ++  ....+..   +...
T Consensus       169 ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---g~~~  243 (854)
T 1qvr_A          169 LDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---GAKY  243 (854)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred             CcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---cCcc
Confidence            356999999999999988642  2345789999999999999999887631           00  0000000   0000


Q ss_pred             CCCc---HHHHHHHhc--cCCceEEecCCCCHH---------H-HHHHhcCCCCCCCCcEEEEEeCchHHH-----Hhc-
Q 037205          180 AIPG---IDLNFRRLS--RMKVLIFFYDVTCFS---------Q-LESLMGSLDWLTPVSRIILTTRNKQVL-----RNW-  238 (439)
Q Consensus       180 ~~~~---~~~l~~~l~--~~~~LlVlDdv~~~~---------~-~~~l~~~~~~~~~gs~IiiTTR~~~v~-----~~~-  238 (439)
                      .-..   ...+...+.  +++.+|++|+++...         . ...+...+.  ..+..+|.+|......     ..+ 
T Consensus       244 ~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~aL~  321 (854)
T 1qvr_A          244 RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALE  321 (854)
T ss_dssp             --CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTC
T ss_pred             chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCHHHH
Confidence            0001   122222222  367899999997542         0 111111111  1233455555433221     111 


Q ss_pred             CCCeEEEcCCCCHHHHHHHHHHh
Q 037205          239 GVSKIYEMEALEYHHALELFSRH  261 (439)
Q Consensus       239 ~~~~~~~l~~L~~~ea~~Lf~~~  261 (439)
                      .....+.+++++.++..+++...
T Consensus       322 rRf~~i~l~~p~~~e~~~iL~~~  344 (854)
T 1qvr_A          322 RRFQPVYVDEPTVEETISILRGL  344 (854)
T ss_dssp             SCCCCEEECCCCHHHHHHHHHHH
T ss_pred             hCCceEEeCCCCHHHHHHHHHhh
Confidence            12245889999999999988643

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.94  E-value=6e-05  Score=76.37  Aligned_cols=138  Identities=14%  Similarity=0.132  Sum_probs=77.9

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----------HH-HHHHHHHHHhcCCCCC
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----------YL-LATKLISNLLKDENAI  181 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~-~~~~ll~~l~~~~~~~  181 (439)
                      ..+|||+.+++.+...|...  ...-+.|+|.+|+|||+||+.+++.+..           |+ +...     .......
T Consensus       180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~~g~~  252 (468)
T 3pxg_A          180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEF  252 (468)
T ss_dssp             CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred             CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----ccccchH
Confidence            56999999999999998742  2335679999999999999999887521           11 0000     0000011


Q ss_pred             -CcH-HHHHHHhccCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHH-------hcCCCeEEEcCCCCHH
Q 037205          182 -PGI-DLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR-------NWGVSKIYEMEALEYH  252 (439)
Q Consensus       182 -~~~-~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-------~~~~~~~~~l~~L~~~  252 (439)
                       ... ..+...-...+.+|++|  ...+....|...+.  ....++|.+|.......       .......+.+++++.+
T Consensus       253 e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e  328 (468)
T 3pxg_A          253 EDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVD  328 (468)
T ss_dssp             CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHH
T ss_pred             HHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHH
Confidence             112 22233333567899999  22232333444433  12345665554333111       0112347899999999


Q ss_pred             HHHHHHHHhh
Q 037205          253 HALELFSRHA  262 (439)
Q Consensus       253 ea~~Lf~~~a  262 (439)
                      +..+++...+
T Consensus       329 ~~~~iL~~~~  338 (468)
T 3pxg_A          329 ESIQILQGLR  338 (468)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHH
Confidence            9999998755

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.87  E-value=9.3e-05  Score=74.79  Aligned_cols=168  Identities=14%  Similarity=0.197  Sum_probs=93.6

Q ss_pred             CCCcccccchHHHHHhhhcc--C--------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          113 KSQLVGVESRVEEIESLLSV--E--------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      ..+++|.+..++++.+.+..  .        ..-.+-|.|+|++|+|||+||+.+++.... |+  ....+    .....
T Consensus        15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~----~~~~~   90 (476)
T 2ce7_A           15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDF----VELFV   90 (476)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGT----TTCCT
T ss_pred             HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHH----HHHHh
Confidence            35689999888777775432  0        112345889999999999999999887543 11  00000    00000


Q ss_pred             CCC---cHHHHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHh-
Q 037205          180 AIP---GIDLNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRN-  237 (439)
Q Consensus       180 ~~~---~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~-  237 (439)
                      ...   ....+.......+.+|+||+++..                ..+..|+..+..+  ..+..||.||..+..+.. 
T Consensus        91 g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~a  170 (476)
T 2ce7_A           91 GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPA  170 (476)
T ss_dssp             THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGG
T ss_pred             cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchh
Confidence            000   112233334457889999999531                1233333222111  234566777766544321 


Q ss_pred             -c---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          238 -W---GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       238 -~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                       .   .....+.++..+.++-.+++..++-...... +.  ....+++.+.|+.
T Consensus       171 llR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~-~v--~l~~la~~t~G~s  221 (476)
T 2ce7_A          171 LLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAE-DV--NLEIIAKRTPGFV  221 (476)
T ss_dssp             GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT-TC--CHHHHHHTCTTCC
T ss_pred             hcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcc-hh--hHHHHHHhcCCCc
Confidence             1   2445788998898888888876663322111 11  1344777788877

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.85  E-value=5.2e-06  Score=72.63  Aligned_cols=43  Identities=26%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             cchHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          120 ESRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       120 ~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...++.+.+++.. .......++|+|++|+||||||+.+++...
T Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3344444444432 112356899999999999999999998875

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.84  E-value=5.7e-05  Score=71.65  Aligned_cols=49  Identities=20%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             CCcccccchHHHHHhhhcc------------CCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          114 SQLVGVESRVEEIESLLSV------------ESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++|.+..++.+...+..            .......+.|+|++|+|||++|+.+++...
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3588999888888876643            012245678999999999999999887653

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.79  E-value=0.00018  Score=77.37  Aligned_cols=147  Identities=16%  Similarity=0.169  Sum_probs=83.1

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HHHHH-HH----HHHHh-cCCCCCC
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----YLLAT-KL----ISNLL-KDENAIP  182 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~~~~-~l----l~~l~-~~~~~~~  182 (439)
                      ...++||+.+++.+.+.|...  ...-+.|+|.+|+|||++|+.+++.+..    ..+.. .+    ...+. +....-.
T Consensus       185 ~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~  262 (758)
T 1r6b_X          185 IDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD  262 (758)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSC
T ss_pred             CCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccch
Confidence            357999999999999988743  3445689999999999999999887532    00000 00    00000 0000001


Q ss_pred             cHHHHHH---Hh-ccCCceEEecCCCCH----------HHHHHHhcCCCCCCCCcEEEEEeCchHHHHhc-------CCC
Q 037205          183 GIDLNFR---RL-SRMKVLIFFYDVTCF----------SQLESLMGSLDWLTPVSRIILTTRNKQVLRNW-------GVS  241 (439)
Q Consensus       183 ~~~~l~~---~l-~~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~-------~~~  241 (439)
                      ....++.   .+ ..++.+|++|+++..          .+...++..... ..+.++|.+|.........       ...
T Consensus       263 ~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf  341 (758)
T 1r6b_X          263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRF  341 (758)
T ss_dssp             HHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGE
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHhCc
Confidence            1122222   22 235789999999743          222233333221 2345666666544321111       112


Q ss_pred             eEEEcCCCCHHHHHHHHHHhh
Q 037205          242 KIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       242 ~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                      ..+.++.++.++..+++....
T Consensus       342 ~~i~v~~p~~~e~~~il~~l~  362 (758)
T 1r6b_X          342 QKIDITEPSIEETVQIINGLK  362 (758)
T ss_dssp             EEEECCCCCHHHHHHHHHHHH
T ss_pred             eEEEcCCCCHHHHHHHHHHHH
Confidence            468899999999988887544

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.78  E-value=0.00014  Score=78.16  Aligned_cols=139  Identities=12%  Similarity=0.099  Sum_probs=79.7

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----------HHHHHHHHHHHhcC-CCC
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----------YLLATKLISNLLKD-ENA  180 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~~~~~ll~~l~~~-~~~  180 (439)
                      ...+|||+.+++.+...|...  ...-+.++|++|+|||++|+.+++.+..           ++... .    ... ...
T Consensus       179 ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~-~----g~~~~G~  251 (758)
T 3pxi_A          179 LDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD-M----GTKYRGE  251 (758)
T ss_dssp             SCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred             CCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec-c----cccccch
Confidence            356999999999999998742  2334789999999999999999887521           10000 0    000 001


Q ss_pred             CC--cHHHHHHHhccCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHh-------cCCCeEEEcCCCCH
Q 037205          181 IP--GIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRN-------WGVSKIYEMEALEY  251 (439)
Q Consensus       181 ~~--~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-------~~~~~~~~l~~L~~  251 (439)
                      ..  ....+.......+.+|++|  ...+....|...+.  ....++|.||........       ......+.++.++.
T Consensus       252 ~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~  327 (758)
T 3pxi_A          252 FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSV  327 (758)
T ss_dssp             -CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCH
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCH
Confidence            11  2233333344678899999  22233333444433  223566666654331110       01225789999999


Q ss_pred             HHHHHHHHHhh
Q 037205          252 HHALELFSRHA  262 (439)
Q Consensus       252 ~ea~~Lf~~~a  262 (439)
                      ++..+++....
T Consensus       328 ~~~~~il~~~~  338 (758)
T 3pxi_A          328 DESIQILQGLR  338 (758)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHH
Confidence            99999998654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.78  E-value=1.6e-05  Score=69.21  Aligned_cols=47  Identities=23%  Similarity=0.307  Sum_probs=40.0

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...++||+.+++.+.+.+..  ...+.+.|+|++|+|||+||+.+++..
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           21 LDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             cchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            35799999999999998864  334567899999999999999998875

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.75  E-value=2.8e-05  Score=72.41  Aligned_cols=49  Identities=24%  Similarity=0.137  Sum_probs=35.0

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++|.+..+..+.+.+..-......|.|+|.+|+|||+||+.+++...
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            4689999999888876653222234677999999999999999987653

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=97.75  E-value=1.4e-05  Score=67.52  Aligned_cols=64  Identities=9%  Similarity=-0.018  Sum_probs=44.8

Q ss_pred             cccchHHHHHHHHhhhhcCCCEEEEEeeecCccc----cccccccchhhHHHHHHHhhhchHHHHHHHHHH
Q 037205            4 CSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSY----VRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGL   70 (439)
Q Consensus         4 ~~~~~~~el~~i~~~~~~~~~~vlPiFy~v~ps~----vr~q~~~~~~~~~~~~~~~~~~~e~v~~W~~aL   70 (439)
                      .|.||..||..++.|...+...||||||+|++++    +|....-.   +..++..|....+.|.+|++||
T Consensus        78 ~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id---~~~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           78 QDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVD---GRGPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEE---TTSGGGGHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeee---ccChHhhHHHHHHHHHHHHHhc
Confidence            4899999999999997433336779999999555    45544322   1234555666667799998875

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.73  E-value=3.8e-05  Score=73.30  Aligned_cols=48  Identities=21%  Similarity=0.288  Sum_probs=37.7

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|++..+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence            358999999999988876422233457799999999999999998854

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.73  E-value=5.8e-05  Score=71.77  Aligned_cols=48  Identities=17%  Similarity=0.373  Sum_probs=37.2

Q ss_pred             CCcccccchHHHHHhhhccC------C-CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          114 SQLVGVESRVEEIESLLSVE------S-KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|.+..++.+...+...      . .....+.++|++|+|||++|+.+++..
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence            34789888888888776532      1 113578999999999999999998875

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.64  E-value=6.2e-05  Score=71.39  Aligned_cols=28  Identities=36%  Similarity=0.552  Sum_probs=24.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..+.+.++|++|+|||+||+.+++....
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l~~   62 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKMGI   62 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4567889999999999999999988654

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.63  E-value=0.00011  Score=78.59  Aligned_cols=170  Identities=15%  Similarity=0.177  Sum_probs=96.6

Q ss_pred             CCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205          113 KSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE  178 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~  178 (439)
                      -.++.|.+..+++|.+.+..           +-...+-|.++|++|+|||+||+.+++.... |+  ...++.    ...
T Consensus       203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~----sk~  278 (806)
T 3cf2_A          203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM----SKL  278 (806)
T ss_dssp             GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH----SSC
T ss_pred             hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh----ccc
Confidence            35688999999888886531           1134678999999999999999999988654 11  111111    110


Q ss_pred             CCCC---cHHHHHHHhccCCceEEecCCCCH-------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHh---
Q 037205          179 NAIP---GIDLNFRRLSRMKVLIFFYDVTCF-------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRN---  237 (439)
Q Consensus       179 ~~~~---~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~---  237 (439)
                      ....   ....+.......+.+|+||+++..             .....|+..+...  ..+-.||.||..+.....   
T Consensus       279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALr  358 (806)
T 3cf2_A          279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR  358 (806)
T ss_dssp             TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTT
T ss_pred             chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHh
Confidence            0000   112223333467899999999532             0122333222111  123345556654433221   


Q ss_pred             --cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          238 --WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       238 --~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                        ......++++..+.++-.++|..+.-......   ......++..+.|+--|
T Consensus       359 R~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~---dvdl~~lA~~T~Gfsga  409 (806)
T 3cf2_A          359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGA  409 (806)
T ss_dssp             STTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT---TCCHHHHHHHCCSCCHH
T ss_pred             CCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc---ccCHHHHHHhcCCCCHH
Confidence              13456889999999998898887653221111   11145677888777543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.60  E-value=6.5e-05  Score=66.76  Aligned_cols=91  Identities=13%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             CCCcccccc----hHHHHHhhhccCCC--CeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCC
Q 037205          113 KSQLVGVES----RVEEIESLLSVESK--DVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENA  180 (439)
Q Consensus       113 ~~~~vGr~~----~~~~l~~~L~~~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~  180 (439)
                      ..+|++.+.    .++.+.+++.....  ..+.+.|+|++|+|||+||+.+++....      |+....+...+......
T Consensus        24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (202)
T 2w58_A           24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQD  103 (202)
T ss_dssp             TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---
T ss_pred             HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhcc
Confidence            356776553    33444455443221  1267889999999999999999987743      22222333333222111


Q ss_pred             CCcHHHHHHHhccCCceEEecCCCC
Q 037205          181 IPGIDLNFRRLSRMKVLIFFYDVTC  205 (439)
Q Consensus       181 ~~~~~~l~~~l~~~~~LlVlDdv~~  205 (439)
                      .. ...+...+... -+|||||++.
T Consensus       104 ~~-~~~~~~~~~~~-~~lilDei~~  126 (202)
T 2w58_A          104 QT-MNEKLDYIKKV-PVLMLDDLGA  126 (202)
T ss_dssp             CC-CHHHHHHHHHS-SEEEEEEECC
T ss_pred             ch-HHHHHHHhcCC-CEEEEcCCCC
Confidence            11 12223333333 4899999953

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=97.59  E-value=0.00014  Score=69.36  Aligned_cols=140  Identities=12%  Similarity=0.120  Sum_probs=82.1

Q ss_pred             cccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHH-HHHHHHHHhcCCCCCCcH---HHHHHHhc-
Q 037205          118 GVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLL-ATKLISNLLKDENAIPGI---DLNFRRLS-  192 (439)
Q Consensus       118 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~-~~~ll~~l~~~~~~~~~~---~~l~~~l~-  192 (439)
                      |-+..++.|.+.+..+.  .+...++|++|+||||+|+.+.+....+-. ...+ ..+ ........+   ..+.+... 
T Consensus         1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l-~~~~~~~~id~ir~li~~~~~   76 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEI-DPEGENIGIDDIRTIKDFLNY   76 (305)
T ss_dssp             ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEE-CCSSSCBCHHHHHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEE-cCCcCCCCHHHHHHHHHHHhh
Confidence            34556677777776443  678899999999999999998764210000 0000 000 000001122   33333333 


Q ss_pred             ----cCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          193 ----RMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK-QVLRNWGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       193 ----~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                          +++-++|+|+++.  ....++|+..+....+.+.+|++|.++ .+....... .+++.+++.++..+.+.+.+
T Consensus        77 ~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A           77 SPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             CCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred             ccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence                3456889999964  344555555544444677777776544 344444334 89999999999999887765

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.55  E-value=6.2e-05  Score=69.55  Aligned_cols=171  Identities=14%  Similarity=0.217  Sum_probs=86.9

Q ss_pred             CCCCcccccchHHHHHhhhcc--C--------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205          112 NKSQLVGVESRVEEIESLLSV--E--------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE  178 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~  178 (439)
                      ...+++|.+....++.++...  .        -.-.+-+.|+|++|+||||||+.++..... ++  ....+....... 
T Consensus        14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~-   92 (254)
T 1ixz_A           14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV-   92 (254)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTH-
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhH-
Confidence            345688888776666654321  0        011223899999999999999999876543 11  011111000000 


Q ss_pred             CCCCcHHHHHHHhc-cCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHHHHh--
Q 037205          179 NAIPGIDLNFRRLS-RMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQVLRN--  237 (439)
Q Consensus       179 ~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~--  237 (439)
                       .......+.+... ..+.++++|+++...                .+..+...+...  .....++.||..+.....  
T Consensus        93 -~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l  171 (254)
T 1ixz_A           93 -GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL  171 (254)
T ss_dssp             -HHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGG
T ss_pred             -HHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHH
Confidence             0001112222222 346799999994210                122332222111  122345556666655332  


Q ss_pred             ---cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          238 ---WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       238 ---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                         ......+.++..+.++-.+++..++-......+   .....+++.+.|+-
T Consensus       172 ~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~  221 (254)
T 1ixz_A          172 LRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV  221 (254)
T ss_dssp             GSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred             cCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc---cCHHHHHHHcCCCC
Confidence               134567889999998888888766522111111   11335666666654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.46  E-value=5.9e-05  Score=63.50  Aligned_cols=47  Identities=23%  Similarity=0.253  Sum_probs=35.8

Q ss_pred             CcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          115 QLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       115 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999998775422233447899999999999999988753

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.45  E-value=0.00048  Score=70.01  Aligned_cols=168  Identities=14%  Similarity=0.207  Sum_probs=91.6

Q ss_pred             CCCCCcccccchHHHHHhhhcc--CC--------CCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205          111 DNKSQLVGVESRVEEIESLLSV--ES--------KDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD  177 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~  177 (439)
                      ....+++|.+..+.++.++...  ..        .-.+-+.|+|++|+||||||+.++..... |+  ...    .+.. 
T Consensus        28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~----~~~~-  102 (499)
T 2dhr_A           28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS----DFVE-  102 (499)
T ss_dssp             CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGG----GGTS-
T ss_pred             CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehh----HHHH-
Confidence            4456799999887777765431  10        11234899999999999999999876542 11  000    0000 


Q ss_pred             CCCCC-cHHHHHHHhcc----CCceEEecCCCCH----------------HHHHHHhcCCCCC--CCCcEEEEEeCchHH
Q 037205          178 ENAIP-GIDLNFRRLSR----MKVLIFFYDVTCF----------------SQLESLMGSLDWL--TPVSRIILTTRNKQV  234 (439)
Q Consensus       178 ~~~~~-~~~~l~~~l~~----~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v  234 (439)
                       .... ....+...+..    .+.++++|+++..                ..+..++..+..+  ..+..++.||..+..
T Consensus       103 -~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~  181 (499)
T 2dhr_A          103 -MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI  181 (499)
T ss_dssp             -SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGG
T ss_pred             -hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhh
Confidence             0000 12223333332    3579999999421                1133443332211  233456667766654


Q ss_pred             HHh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          235 LRN-----WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       235 ~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                      +..     ......+.++..+.++-.+++..++-.......   .....++..+.|+.
T Consensus       182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~  236 (499)
T 2dhr_A          182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV  236 (499)
T ss_dssp             SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred             cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence            332     123457889999999888888776522211111   11345666666765

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.45  E-value=9.3e-05  Score=69.45  Aligned_cols=172  Identities=14%  Similarity=0.201  Sum_probs=88.7

Q ss_pred             CCCCCcccccchHHHHHhhhccC-C---------CCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205          111 DNKSQLVGVESRVEEIESLLSVE-S---------KDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD  177 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~-~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~  177 (439)
                      ....+++|.+..++++.++...- .         .-.+-+.|+|++|+||||||+.++..... ++  ....+.......
T Consensus        37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~  116 (278)
T 1iy2_A           37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV  116 (278)
T ss_dssp             CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTH
T ss_pred             CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhH
Confidence            44467899888777776654210 0         11123899999999999999999876543 11  001111000000


Q ss_pred             CCCCCcHHHHHHHh-ccCCceEEecCCCCH----------------HHHHHHhcCCCCCC--CCcEEEEEeCchHHHHh-
Q 037205          178 ENAIPGIDLNFRRL-SRMKVLIFFYDVTCF----------------SQLESLMGSLDWLT--PVSRIILTTRNKQVLRN-  237 (439)
Q Consensus       178 ~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~-  237 (439)
                        .......+.+.. ...+.++++|+++..                ..+..+...+....  ....++.||..+..... 
T Consensus       117 --~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~  194 (278)
T 1iy2_A          117 --GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA  194 (278)
T ss_dssp             --HHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHH
T ss_pred             --HHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHh
Confidence              000111222222 234679999999421                11233332222111  22344556665544221 


Q ss_pred             ----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          238 ----WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       238 ----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                          ......+.++..+.++-.+++..++-......+   .....++..+.|+.
T Consensus       195 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~  245 (278)
T 1iy2_A          195 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV  245 (278)
T ss_dssp             HHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred             HcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence                134567889999998888888766522111111   11345666666655

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.42  E-value=0.0036  Score=64.47  Aligned_cols=143  Identities=20%  Similarity=0.267  Sum_probs=75.7

Q ss_pred             CcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH------HHHHHHHHHhcCCC----
Q 037205          115 QLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL------LATKLISNLLKDEN----  179 (439)
Q Consensus       115 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~------~~~~ll~~l~~~~~----  179 (439)
                      +++|.+...+.+.+.+..    .......+.|+|++|+||||||+.++..... |.      ...  ...+.+...    
T Consensus        82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~--~~~~~g~~~~~ig  159 (543)
T 3m6a_A           82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRD--ESEIRGHRRTYVG  159 (543)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred             HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccch--hhhhhhHHHHHhc
Confidence            468877777666554321    1124568999999999999999999877643 11      000  000000000    


Q ss_pred             CC-CcHHHHHHHhccCCceEEecCCCCHHH------HHHHhcCCCCCC---------------CCcEEEEEeCchH----
Q 037205          180 AI-PGIDLNFRRLSRMKVLIFFYDVTCFSQ------LESLMGSLDWLT---------------PVSRIILTTRNKQ----  233 (439)
Q Consensus       180 ~~-~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~---------------~gs~IiiTTR~~~----  233 (439)
                      .. .............+-+++||+++....      ...|+..+....               ....+|.||....    
T Consensus       160 ~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~  239 (543)
T 3m6a_A          160 AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPG  239 (543)
T ss_dssp             ----CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCH
T ss_pred             cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCH
Confidence            00 011111222222344888999964321      233333322110               2346666766432    


Q ss_pred             -HHHhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          234 -VLRNWGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       234 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                       +...+   ..+.+++++.++-.+++..+.
T Consensus       240 aL~~R~---~vi~~~~~~~~e~~~Il~~~l  266 (543)
T 3m6a_A          240 PLRDRM---EIINIAGYTEIEKLEIVKDHL  266 (543)
T ss_dssp             HHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred             HHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence             23332   578999999999988887764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.37  E-value=0.0013  Score=61.52  Aligned_cols=142  Identities=16%  Similarity=0.198  Sum_probs=76.7

Q ss_pred             CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCC-C
Q 037205          114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDEN-A  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~-~  180 (439)
                      .++.|.+..+++|.+.+..           +-.-.+-++|+|++|+||||||+.++..... ++       .+.+..- .
T Consensus        10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i-------~i~g~~l~~   82 (274)
T 2x8a_A           10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFI-------SVKGPELLN   82 (274)
T ss_dssp             --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE-------EEETTTTCS
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEE-------EEEcHHHHh
Confidence            4567777777666653311           0011223999999999999999998876542 10       0000000 0


Q ss_pred             CC------cHHHHHHHh-ccCCceEEecCCCCHH-------------HHHHHhcCCCC--CCCCcEEEEEeCchHHHHhc
Q 037205          181 IP------GIDLNFRRL-SRMKVLIFFYDVTCFS-------------QLESLMGSLDW--LTPVSRIILTTRNKQVLRNW  238 (439)
Q Consensus       181 ~~------~~~~l~~~l-~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~gs~IiiTTR~~~v~~~~  238 (439)
                      ..      .+..+.+.. ...+.++++|+++...             ....+...+..  .....-++.+|..+.+....
T Consensus        83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~a  162 (274)
T 2x8a_A           83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPA  162 (274)
T ss_dssp             STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHH
T ss_pred             hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHh
Confidence            00      111222222 3357899999996420             11222222211  11234455677766553321


Q ss_pred             -----CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          239 -----GVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       239 -----~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                           ..+..+.++..+.++-.++|..+.
T Consensus       163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~  191 (274)
T 2x8a_A          163 ILRPGRLDKTLFVGLPPPADRLAILKTIT  191 (274)
T ss_dssp             HHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred             hcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence                 456788899999999899887765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.25  E-value=0.0011  Score=71.13  Aligned_cols=145  Identities=17%  Similarity=0.225  Sum_probs=78.1

Q ss_pred             CCcccccchHHHHHhhhccCC-------CCeeEEEEecCCCChhHHHHHHHHhHHhH----HHHHHHHHHHHhcCCCCCC
Q 037205          114 SQLVGVESRVEEIESLLSVES-------KDVYALGIWGIGGIGKTTIARATFDKISR----YLLATKLISNLLKDENAIP  182 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~~~~~ll~~l~~~~~~~~  182 (439)
                      ..++|.+..++.+...+....       .....+.++|++|+|||++|+.+++....    |+...  .+.+.... .. 
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~--~s~~~~~~-~~-  566 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID--MSEYMEKH-ST-  566 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE--GGGGCSSC-CC-
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe--chhccccc-cc-
Confidence            568999998888887765311       12337899999999999999998876521    11000  00000000 00 


Q ss_pred             cHHHHHHHhc-cCCceEEecCCCCH--HHHHHHhcCCCC-----------CCCCcEEEEEeCc-----hHH----HHh--
Q 037205          183 GIDLNFRRLS-RMKVLIFFYDVTCF--SQLESLMGSLDW-----------LTPVSRIILTTRN-----KQV----LRN--  237 (439)
Q Consensus       183 ~~~~l~~~l~-~~~~LlVlDdv~~~--~~~~~l~~~~~~-----------~~~gs~IiiTTR~-----~~v----~~~--  237 (439)
                      ....+...++ ...-+|+||+++..  +....|+..+..           ...+.+||+||..     ..+    ...  
T Consensus       567 ~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~  646 (758)
T 3pxi_A          567 SGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFR  646 (758)
T ss_dssp             C---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSC
T ss_pred             ccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCC
Confidence            0111222222 23458999999643  223333322111           1235688888872     111    011  


Q ss_pred             ----cCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          238 ----WGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       238 ----~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                          ...+..+.+++|+.++-.+++....
T Consensus       647 p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l  675 (758)
T 3pxi_A          647 PEFINRIDEIIVFHSLEKKHLTEIVSLMS  675 (758)
T ss_dssp             HHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred             HHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence                1234688999999998888876654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.10  E-value=7.8e-05  Score=62.61  Aligned_cols=48  Identities=17%  Similarity=0.150  Sum_probs=34.1

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            468999999999888875311222347799999999999999987653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.92  E-value=0.00068  Score=64.64  Aligned_cols=89  Identities=13%  Similarity=0.156  Sum_probs=48.7

Q ss_pred             CCccccc----chHHHHHhhhccCCC-CeeEEEEecCCCChhHHHHHHHHhHHh-H------HHHHHHHHHHHhcCCCCC
Q 037205          114 SQLVGVE----SRVEEIESLLSVESK-DVYALGIWGIGGIGKTTIARATFDKIS-R------YLLATKLISNLLKDENAI  181 (439)
Q Consensus       114 ~~~vGr~----~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~-~------f~~~~~ll~~l~~~~~~~  181 (439)
                      .+|++.+    ..++.+.+++..... ....+.|+|.+|+|||+||..+++... .      |+....++..+......-
T Consensus       124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~  203 (308)
T 2qgz_A          124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNG  203 (308)
T ss_dssp             GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC--
T ss_pred             hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccc
Confidence            4565433    334444455543221 246788999999999999999998876 4      232334444443322110


Q ss_pred             CcHHHHHHHhccCCceEEecCCC
Q 037205          182 PGIDLNFRRLSRMKVLIFFYDVT  204 (439)
Q Consensus       182 ~~~~~l~~~l~~~~~LlVlDdv~  204 (439)
                      . .......+. +.-+|||||+.
T Consensus       204 ~-~~~~~~~~~-~~~lLiiDdig  224 (308)
T 2qgz_A          204 S-VKEEIDAVK-NVPVLILDDIG  224 (308)
T ss_dssp             ---CCTTHHHH-TSSEEEEETCC
T ss_pred             h-HHHHHHHhc-CCCEEEEcCCC
Confidence            0 001111222 23489999994

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.78  E-value=0.00058  Score=73.40  Aligned_cols=48  Identities=19%  Similarity=0.293  Sum_probs=36.9

Q ss_pred             CCcccccchHHHHHhhhccC-------CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          114 SQLVGVESRVEEIESLLSVE-------SKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|.+..++.+...+...       ......+.++|++|+|||++|+.+++..
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence            45889998888887766421       1123478999999999999999988765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.61  E-value=0.0042  Score=67.56  Aligned_cols=48  Identities=17%  Similarity=0.376  Sum_probs=37.4

Q ss_pred             CCcccccchHHHHHhhhccC-------CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          114 SQLVGVESRVEEIESLLSVE-------SKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|.+..++.+...+...       ......+.|+|++|+|||++|+.+++..
T Consensus       558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35799999888888776431       1123578999999999999999998776

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.55  E-value=0.0016  Score=65.59  Aligned_cols=51  Identities=27%  Similarity=0.276  Sum_probs=38.6

Q ss_pred             CCCCcccccchHHHHHhhhc---cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          112 NKSQLVGVESRVEEIESLLS---VESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ....++|.+..++.+..++.   .+....+-+.++|++|+|||+||+.+++...
T Consensus        35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            34779999988876665443   2322345788999999999999999988764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.51  E-value=0.0038  Score=59.04  Aligned_cols=26  Identities=31%  Similarity=0.324  Sum_probs=22.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+++++|.+|+||||++..++..+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999998876653

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.50  E-value=0.0017  Score=69.54  Aligned_cols=150  Identities=14%  Similarity=0.248  Sum_probs=78.8

Q ss_pred             CCCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhc
Q 037205          111 DNKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLK  176 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~  176 (439)
                      ..-.++.|.+...++|.+.+..           +....+-|.++|++|.|||.||+++++.... |+  ...++++...+
T Consensus       474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vG  553 (806)
T 3cf2_A          474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG  553 (806)
T ss_dssp             CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCS
T ss_pred             CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccc
Confidence            3345677888888888776532           1123456889999999999999999988765 32  11222221111


Q ss_pred             CCCCCCcHHHHHHHh-ccCCceEEecCCCCH----------------HHHHHHhcCCCCCCC--CcEEEEEeCch-----
Q 037205          177 DENAIPGIDLNFRRL-SRMKVLIFFYDVTCF----------------SQLESLMGSLDWLTP--VSRIILTTRNK-----  232 (439)
Q Consensus       177 ~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~--gs~IiiTTR~~-----  232 (439)
                      ..  ...+..+.+.. +..+++|+||+++..                ..+..|+..+.....  +--||.||..+     
T Consensus       554 es--e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~  631 (806)
T 3cf2_A          554 ES--EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP  631 (806)
T ss_dssp             SC--HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCH
T ss_pred             hH--HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCH
Confidence            11  00222232322 356899999999531                012333333322222  22233344433     


Q ss_pred             HHHHhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          233 QVLRNWGVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       233 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                      .+...-..+..+.++..+.++-.++|..+.
T Consensus       632 AllRpgRfd~~i~v~lPd~~~R~~il~~~l  661 (806)
T 3cf2_A          632 AILRPGRLDQLIYIPLPDEKSRVAILKANL  661 (806)
T ss_dssp             HHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred             hHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence            222222356778888777777777776655

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.38  E-value=0.0032  Score=56.12  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=23.7

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ....+|+|.|.+|.|||||++.+...+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3467999999999999999998876653

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.36  E-value=0.002  Score=55.05  Aligned_cols=25  Identities=16%  Similarity=0.025  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|.|.|++|+||||+|+.+...+.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4789999999999999999887643

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.35  E-value=0.0018  Score=55.90  Aligned_cols=25  Identities=20%  Similarity=0.198  Sum_probs=22.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|.|.|++|+||||+|+.+.+.+.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4789999999999999999887653

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.34  E-value=0.0024  Score=62.16  Aligned_cols=47  Identities=17%  Similarity=0.158  Sum_probs=34.2

Q ss_pred             cccccchHHHHHhhhc-------------cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          116 LVGVESRVEEIESLLS-------------VESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       116 ~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|.+..++.+...+.             ......+.|.++|++|+|||++|+.+++...
T Consensus        17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            5777777777766652             1111345688999999999999999988754

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.32  E-value=0.0032  Score=55.77  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             ccchHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          119 VESRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       119 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      |+..++.+.+.+.. ......+|+|.|.+|+|||||++.+...+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34455555555543 22346799999999999999999887654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.29  E-value=0.002  Score=55.01  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+|+|.|++|+||||+|+.+ ...
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC
Confidence            47899999999999999999 443

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.23  E-value=0.0017  Score=62.21  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=36.5

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|++..++.+...+..+    .-+.++|.+|+|||+||+.+++..
T Consensus        27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred             cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHh
Confidence            46899999998888877632    358899999999999999988764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.18  E-value=0.0028  Score=55.05  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=22.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+.|.|+|++|+||||+|+.+...+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35788999999999999999987754

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.17  E-value=0.013  Score=52.14  Aligned_cols=73  Identities=19%  Similarity=0.202  Sum_probs=43.8

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH-HHHHHHH--------------HHHHhcCCCCCC---cHHHHHHHhccCCceEEe
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR-YLLATKL--------------ISNLLKDENAIP---GIDLNFRRLSRMKVLIFF  200 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~l--------------l~~l~~~~~~~~---~~~~l~~~l~~~~~LlVl  200 (439)
                      +|.|.|+||+||||.|+.+.+++.- .+....+              +........-.+   ....+.+.+..... +||
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~-~il   80 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGN-VIF   80 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSC-EEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCc-eEe
Confidence            5778999999999999999987643 1111111              111222222122   45666777766554 678


Q ss_pred             cCC-CCHHHHHHH
Q 037205          201 YDV-TCFSQLESL  212 (439)
Q Consensus       201 Ddv-~~~~~~~~l  212 (439)
                      |.+ .+..|.+.|
T Consensus        81 DGfPRt~~Qa~~l   93 (206)
T 3sr0_A           81 DGFPRTVKQAEAL   93 (206)
T ss_dssp             ESCCCSHHHHHHH
T ss_pred             cCCchhHHHHHHH
Confidence            998 566665554

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.16  E-value=0.0029  Score=55.93  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=22.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...|.|+|++|+||||+|+.+...+.
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            45899999999999999999987654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.15  E-value=0.0056  Score=57.69  Aligned_cols=29  Identities=17%  Similarity=0.181  Sum_probs=24.3

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .....+|+|.|.+|+||||||+.+...+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34577999999999999999998776653

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.13  E-value=0.009  Score=57.09  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=22.6

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+|+|+|.+|+||||++..++..+
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999877654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.12  E-value=0.0039  Score=52.56  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=22.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .-..++|+|.+|.|||||++.++...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999988765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.10  E-value=0.0033  Score=54.14  Aligned_cols=22  Identities=32%  Similarity=0.296  Sum_probs=20.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5789999999999999999987

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.07  E-value=0.0036  Score=54.45  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=22.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..|.|.|++|+||||+|+.+.+.+.
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999988765

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.04  E-value=0.0027  Score=61.11  Aligned_cols=48  Identities=23%  Similarity=0.187  Sum_probs=33.6

Q ss_pred             CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ....++|.+..++.+...+...  ...-+.|+|.+|+|||+||+.+++..
T Consensus        22 ~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~   69 (350)
T 1g8p_A           22 PFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALL   69 (350)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhC
Confidence            3456999988655544333211  12238899999999999999988765

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.02  E-value=0.0028  Score=54.31  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|+|+|++|+|||||++.+...+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999887654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.00  E-value=0.029  Score=53.73  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+++|+|+.|+||||+++.++..+.
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999998876543

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.99  E-value=0.004  Score=54.12  Aligned_cols=25  Identities=24%  Similarity=0.474  Sum_probs=22.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|.|.|++|+||||+|+.+...+.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999988765

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.98  E-value=0.0048  Score=53.77  Aligned_cols=26  Identities=23%  Similarity=0.206  Sum_probs=22.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|.|.|++|+||||+|+.+...+.
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l~   30 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGLR   30 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999987654

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.96  E-value=0.005  Score=56.37  Aligned_cols=41  Identities=20%  Similarity=0.066  Sum_probs=28.6

Q ss_pred             hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+.++.+.+.........|+|.|++|+||||+|+.+.+.+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g   54 (243)
T 3tlx_A           14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHC   54 (243)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            33344433332233567899999999999999999987653

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.93  E-value=0.0035  Score=54.22  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=22.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+.|.|+|++|+||||+|+.+.+.+.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            45788999999999999999987754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.93  E-value=0.0033  Score=55.56  Aligned_cols=26  Identities=19%  Similarity=0.382  Sum_probs=22.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|+|.|++|+||||+|+.+...+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999887653

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.93  E-value=0.0038  Score=54.44  Aligned_cols=24  Identities=38%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.+++|+|++|.|||||++.+...
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            468999999999999999998765

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.91  E-value=0.0046  Score=52.83  Aligned_cols=28  Identities=21%  Similarity=0.233  Sum_probs=23.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ...+|+|.|++|+||||+|+.+...+..
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg~   33 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALKL   33 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3568999999999999999999887543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.89  E-value=0.0062  Score=52.32  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=21.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.+|+|+|++|.||||+++.+....
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999987654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.85  E-value=0.0058  Score=53.95  Aligned_cols=27  Identities=26%  Similarity=0.310  Sum_probs=23.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|+|+|++|.||||||+.+...+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999887653

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.85  E-value=0.0071  Score=58.34  Aligned_cols=44  Identities=25%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             cchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          120 ESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       120 ~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +.-.+.+.+.+..  ..+....|.|+|++|+||||+++.++..+..
T Consensus         5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A            5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            3334444444421  2345667999999999999999999988764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.84  E-value=0.0054  Score=53.41  Aligned_cols=26  Identities=23%  Similarity=0.224  Sum_probs=22.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|+|.|++|+||||+|+.+...+.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999887653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.84  E-value=0.0038  Score=54.21  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|+|.|++|+||||+|+.+...+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3589999999999999999988754

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.82  E-value=0.004  Score=63.24  Aligned_cols=44  Identities=18%  Similarity=0.025  Sum_probs=36.3

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|.+..++.+...+..+    .-|.|+|++|+|||+||+.+++..
T Consensus        22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred             hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence            34899999888888776632    368899999999999999998865

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.81  E-value=0.018  Score=54.63  Aligned_cols=41  Identities=22%  Similarity=0.300  Sum_probs=29.5

Q ss_pred             hHHHHHhhhccC------CCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          122 RVEEIESLLSVE------SKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       122 ~~~~l~~~L~~~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -.++|.+.|...      .....+|+|+|.+|+||||++..++..+.
T Consensus        83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A           83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence            445555555421      23467999999999999999999886654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.80  E-value=0.0055  Score=56.50  Aligned_cols=24  Identities=25%  Similarity=0.181  Sum_probs=21.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+|.|.|++|+||||||+.++...
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            478999999999999999987764

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.79  E-value=0.0058  Score=59.67  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=22.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+.++|++|+|||++|+.+++...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            34688999999999999999987753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.78  E-value=0.003  Score=61.39  Aligned_cols=96  Identities=11%  Similarity=0.043  Sum_probs=60.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhHH-----H----HHHHHHH----HHhc---CCCCCCcHHHHHHHhccCCceEEec
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISRY-----L----LATKLIS----NLLK---DENAIPGIDLNFRRLSRMKVLIFFY  201 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~f-----~----~~~~ll~----~l~~---~~~~~~~~~~l~~~l~~~~~LlVlD  201 (439)
                      .+++|+|+.|.|||||.+.+...+...     +    ...-...    .+..   ..........+.+.|...+=+|++|
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD  203 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG  203 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence            489999999999999999887665420     0    0000000    0000   0001113457888899999999999


Q ss_pred             CCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHH
Q 037205          202 DVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR  236 (439)
Q Consensus       202 dv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~  236 (439)
                      +..+.+.++.+....   ..|..||+||.....+.
T Consensus       204 Ep~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~  235 (356)
T 3jvv_A          204 EMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK  235 (356)
T ss_dssp             CCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred             CCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence            999877766544332   24667889988765543

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.78  E-value=0.0062  Score=53.72  Aligned_cols=27  Identities=26%  Similarity=0.247  Sum_probs=23.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|+|.|++|+||||+|+.+.+.+.
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g   40 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDYS   40 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            467899999999999999999987653

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.78  E-value=0.0055  Score=53.87  Aligned_cols=24  Identities=33%  Similarity=0.567  Sum_probs=21.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|+|.|++|+||||+|+.+.+.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            589999999999999999887643

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.77  E-value=0.0061  Score=52.85  Aligned_cols=26  Identities=27%  Similarity=0.204  Sum_probs=22.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...|+|.|++|+||||+|+.+.+.+.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l~   29 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQELG   29 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999987643

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.76  E-value=0.0056  Score=53.51  Aligned_cols=26  Identities=23%  Similarity=0.185  Sum_probs=22.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|+|.|++|+||||+|+.+.+.+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999987653

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.75  E-value=0.0055  Score=54.09  Aligned_cols=26  Identities=35%  Similarity=0.482  Sum_probs=22.6

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+|+|.|++|.|||||++.+....
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            34689999999999999999988765

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.74  E-value=0.0054  Score=52.78  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=21.9

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|.|.|++|+||||+|+.+...+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~   30 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDL   30 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            5889999999999999999887643

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.72  E-value=0.0056  Score=53.11  Aligned_cols=24  Identities=25%  Similarity=0.410  Sum_probs=21.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ++++|+|++|+|||||++.+....
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            589999999999999999987653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.71  E-value=0.0056  Score=53.64  Aligned_cols=26  Identities=27%  Similarity=0.212  Sum_probs=22.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|+|.|++|+||||+|+.+...+.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999988754

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.71  E-value=0.005  Score=52.68  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|.|.|++|+||||+|+.+.+.+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3689999999999999999988754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.69  E-value=0.006  Score=53.14  Aligned_cols=24  Identities=29%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...|+|+|++|+||||+|+.+.+.
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999999887

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.67  E-value=0.0069  Score=53.56  Aligned_cols=25  Identities=32%  Similarity=0.347  Sum_probs=21.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|.|.|++|+||||+|+.+.+.+.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            5789999999999999999887643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.65  E-value=0.0068  Score=52.69  Aligned_cols=26  Identities=19%  Similarity=0.146  Sum_probs=22.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|+|.|++|+||||+|+.+.+.+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999987653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.64  E-value=0.0077  Score=52.37  Aligned_cols=27  Identities=33%  Similarity=0.356  Sum_probs=23.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|.|.|++|+||||+++.+...+.
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999887764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.63  E-value=0.0069  Score=55.66  Aligned_cols=27  Identities=15%  Similarity=0.361  Sum_probs=22.8

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ....+|+|.|++|+||||+|+.+...+
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999999887754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.61  E-value=0.028  Score=55.98  Aligned_cols=27  Identities=22%  Similarity=0.137  Sum_probs=23.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++|.++|.+|+||||++..++..+.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~  125 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLR  125 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999998876554

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.61  E-value=0.0082  Score=52.90  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=22.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...|.|.|++|+||||+|+.+...+.
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45799999999999999999987654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.60  E-value=0.0073  Score=51.39  Aligned_cols=24  Identities=17%  Similarity=0.209  Sum_probs=21.4

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|+|.|++|+||||+|+.+.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999988654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.59  E-value=0.0048  Score=53.32  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=18.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|.|.|++|+||||+|+.+.+.+.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35799999999999999999887654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.59  E-value=0.007  Score=54.29  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+|+|+|++|+||||+|+.+...+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999988765

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.58  E-value=0.023  Score=57.25  Aligned_cols=27  Identities=22%  Similarity=0.396  Sum_probs=22.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+++|+|..|+|||||++.++..+.
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence            357999999999999999998876543

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.57  E-value=0.0051  Score=54.54  Aligned_cols=25  Identities=24%  Similarity=0.499  Sum_probs=21.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .++|.|+|++|+|||||++.+....
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            4678999999999999999987654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.57  E-value=0.0074  Score=54.07  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=22.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...|.|.|++|+||||+|+.+.+.+.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            35789999999999999999988754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.56  E-value=0.0075  Score=52.48  Aligned_cols=23  Identities=35%  Similarity=0.567  Sum_probs=21.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhHH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +|+|.|++|+||||+|+.+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999988865

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.55  E-value=0.0074  Score=53.03  Aligned_cols=26  Identities=35%  Similarity=0.313  Sum_probs=23.1

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +...+|+|.|++|+||||+|+.+...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            45678999999999999999998876

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.55  E-value=0.0089  Score=53.73  Aligned_cols=28  Identities=21%  Similarity=0.204  Sum_probs=25.0

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+.++|.|.|+||+||||.|+.+.+++.
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4678999999999999999999988764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.54  E-value=0.0076  Score=52.50  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+++|.|++|.|||||++.+...
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhcc
Confidence            47899999999999999999764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.53  E-value=0.0092  Score=55.15  Aligned_cols=26  Identities=23%  Similarity=0.448  Sum_probs=22.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|.|.|++|+||||+|+.+...+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45899999999999999999988754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.52  E-value=0.011  Score=55.48  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=22.8

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+|.|.|++|+||||+|+.+....
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35688999999999999999998765

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.52  E-value=0.0077  Score=55.03  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=22.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..+|+|+|++|+|||||++.+.+.+
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.48  E-value=0.0094  Score=51.29  Aligned_cols=27  Identities=19%  Similarity=0.143  Sum_probs=22.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++++|.|..|+|||||+..+...+.
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            457899999999999999998776643

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.44  E-value=0.0078  Score=53.01  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=20.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+++|+|+.|+|||||++.+...
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            58999999999999999987654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.44  E-value=0.0092  Score=52.83  Aligned_cols=26  Identities=15%  Similarity=0.156  Sum_probs=22.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|+|.|++|+||||+|+.+.+.+.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999887654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.43  E-value=0.0075  Score=53.22  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=19.7

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      +|+|+|++|+||||+++.+..
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999877

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=95.43  E-value=0.0095  Score=52.45  Aligned_cols=93  Identities=16%  Similarity=0.110  Sum_probs=52.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH---------HH------HHHHHHHHHh------cCCC--CC-------C----c
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR---------YL------LATKLISNLL------KDEN--AI-------P----G  183 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~------~~~~ll~~l~------~~~~--~~-------~----~  183 (439)
                      ..|.|++-.|.||||+|....-+...         |+      -...++..+.      +...  ..       .    .
T Consensus        29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~  108 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV  108 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence            45667777779999999888777654         22      1123444441      0000  00       0    2


Q ss_pred             HHHHHHHhccC-CceEEecCCC--------CHHHHHHHhcCCCCCCCCcEEEEEeCchH
Q 037205          184 IDLNFRRLSRM-KVLIFFYDVT--------CFSQLESLMGSLDWLTPVSRIILTTRNKQ  233 (439)
Q Consensus       184 ~~~l~~~l~~~-~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~  233 (439)
                      ....++.+.+. -=|||||++.        +.+.+-.++...   .....||+|+|+..
T Consensus       109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~ap  164 (196)
T 1g5t_A          109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGCH  164 (196)
T ss_dssp             HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSCC
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCCCc
Confidence            33445555444 4599999983        233333333332   35678999999763

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.43  E-value=0.011  Score=52.43  Aligned_cols=38  Identities=18%  Similarity=0.212  Sum_probs=27.4

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +..+..++.. -+....+.|+|++|+||||+|..+++.+
T Consensus        45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            4555555542 2223468999999999999999887664

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.41  E-value=0.0078  Score=53.56  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=22.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+|+|+|++|+|||||++.+....
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            35689999999999999999987664

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.40  E-value=0.0081  Score=52.95  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=21.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..+|+|+|++|+||||+++.+....
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3589999999999999999876553

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.39  E-value=0.01  Score=52.66  Aligned_cols=27  Identities=33%  Similarity=0.454  Sum_probs=22.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|+|.|..|.|||||++.+...+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999998876643

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.38  E-value=0.0093  Score=53.13  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|+|.|++|+||||+|+.+...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999987654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.37  E-value=0.0087  Score=52.92  Aligned_cols=22  Identities=50%  Similarity=0.572  Sum_probs=20.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .+|+|.|++|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999876

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.36  E-value=0.01  Score=52.66  Aligned_cols=26  Identities=19%  Similarity=0.266  Sum_probs=22.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|+|.|++|+||||+|+.+.+.+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45899999999999999999987754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.35  E-value=0.01  Score=51.60  Aligned_cols=24  Identities=29%  Similarity=0.536  Sum_probs=21.2

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .++|+|+.|+|||||++.++....
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999887654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.33  E-value=0.011  Score=52.39  Aligned_cols=26  Identities=31%  Similarity=0.571  Sum_probs=22.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+|+|+|++|.||||+|+.+...+
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            45789999999999999999987764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.31  E-value=0.0083  Score=51.62  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=19.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -.+++|+|++|.|||||++.++
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHc
Confidence            4689999999999999999543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.30  E-value=0.013  Score=51.68  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=23.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+|+|+|+.|+||||+|+.+.+.+
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhc
Confidence            46899999999999999999998763

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.25  E-value=0.0085  Score=52.50  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      |.|.|+|++|+|||||++.+..+.
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            568899999999999999987664

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.21  E-value=0.0099  Score=52.97  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.8

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|+|.|++|+||||+|+.+...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999987653

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.21  E-value=0.015  Score=55.41  Aligned_cols=45  Identities=22%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             ccccchHHHHHhhhccC--CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          117 VGVESRVEEIESLLSVE--SKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       117 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +|-...+..+...+...  .....+|+|.|..|+||||||+.+...+
T Consensus        70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            44444555555444322  3456799999999999999999876544

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.19  E-value=0.041  Score=54.73  Aligned_cols=27  Identities=30%  Similarity=0.229  Sum_probs=23.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|.++|.+|+||||++..++..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            468999999999999999998876554

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.17  E-value=0.0094  Score=53.71  Aligned_cols=26  Identities=23%  Similarity=0.288  Sum_probs=22.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...|.|.|++|+||||+|+.+.+.+.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            35799999999999999999987653

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.15  E-value=0.014  Score=50.31  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=21.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.+|+|.|+.|+||||+++.+...+
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999987764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.11  E-value=0.01  Score=53.21  Aligned_cols=26  Identities=23%  Similarity=0.098  Sum_probs=22.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...|.|.|++|+||||+|+.+.+.+.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35688999999999999999988764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.11  E-value=0.063  Score=53.30  Aligned_cols=28  Identities=25%  Similarity=0.229  Sum_probs=24.0

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..++|.++|.+|+||||++..++..+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~  123 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK  123 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3689999999999999999988866543

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=95.09  E-value=0.15  Score=48.69  Aligned_cols=150  Identities=11%  Similarity=-0.038  Sum_probs=91.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHH-HHhcCCCCCCcHHHHHHH-----hccCCceEEecCCCC---H
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISRYLLATKLIS-NLLKDENAIPGIDLNFRR-----LSRMKVLIFFYDVTC---F  206 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~-~l~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~---~  206 (439)
                      -.++..++|..|.||++.|..+.+....    ...-. ....-... .....+.+.     +-+++-++|+|+++.   .
T Consensus        17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~-~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~   91 (343)
T 1jr3_D           17 LRAAYLLLGNDPLLLQESQDAVRQVAAA----QGFEEHHTFSIDPN-TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA   91 (343)
T ss_dssp             CCSEEEEEESCHHHHHHHHHHHHHHHHH----HTCCEEEEEECCTT-CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHHHHHh----CCCCeeEEEEecCC-CCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh
Confidence            4568899999999999999988776421    00000 00000011 123333332     335677888999865   2


Q ss_pred             HHHHHHhcCCCCCCCCcEEEEEeCc-------hHHHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHH
Q 037205          207 SQLESLMGSLDWLTPVSRIILTTRN-------KQVLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSN  278 (439)
Q Consensus       207 ~~~~~l~~~~~~~~~gs~IiiTTR~-------~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~  278 (439)
                      ...+.|...+....+++.+|++|.+       ..+.... .....++..+++.++....+...+-..+..  -..+.+..
T Consensus        92 ~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~--i~~~a~~~  169 (343)
T 1jr3_D           92 AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLE--LDDAANQV  169 (343)
T ss_dssp             THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCE--ECHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHH
Confidence            4455555544434467777766543       2344443 345688999999999988887766333211  22566888


Q ss_pred             HHHHhCCCcHHHHH
Q 037205          279 VMKYVQGVPLALKV  292 (439)
Q Consensus       279 i~~~~~GlPLal~~  292 (439)
                      +++.++|.+..+..
T Consensus       170 l~~~~~gdl~~~~~  183 (343)
T 1jr3_D          170 LCYCYEGNLLALAQ  183 (343)
T ss_dssp             HHHSSTTCHHHHHH
T ss_pred             HHHHhchHHHHHHH
Confidence            89999998887654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.07  E-value=0.0073  Score=53.58  Aligned_cols=23  Identities=26%  Similarity=0.422  Sum_probs=20.3

Q ss_pred             EEEEecCCCChhHHHHHHHHhHH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +|+|.|+.|+||||+|+.+...+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l   24 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAF   24 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            68999999999999999877654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.05  E-value=0.015  Score=51.66  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=23.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|.|.|++|+||||+|+.+...+.
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            46899999999999999999887765

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.02  E-value=0.012  Score=52.69  Aligned_cols=25  Identities=24%  Similarity=0.167  Sum_probs=22.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..|.|.|++|+||||+|+.+...+.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999988764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.99  E-value=0.011  Score=51.88  Aligned_cols=25  Identities=24%  Similarity=0.206  Sum_probs=22.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...|+|.|++|+||||+++.+.+.+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999988764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=94.99  E-value=0.013  Score=53.88  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=22.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|+|.|+.|+||||+++.+...+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45899999999999999999986654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=94.98  E-value=0.018  Score=57.35  Aligned_cols=49  Identities=20%  Similarity=0.251  Sum_probs=34.4

Q ss_pred             CCcccccchHHHHHhhhcc------------CCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          114 SQLVGVESRVEEIESLLSV------------ESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++|.+..++.+...+..            .....+-|.++|++|+||||+|+.++....
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3477777777766554421            011245688999999999999999987754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.98  E-value=0.084  Score=47.65  Aligned_cols=77  Identities=19%  Similarity=0.178  Sum_probs=45.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH-HH--------------HHHHHHHHHhcCCCCCC---cHHHHHHHhccC--Cc
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR-YL--------------LATKLISNLLKDENAIP---GIDLNFRRLSRM--KV  196 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--------------~~~~ll~~l~~~~~~~~---~~~~l~~~l~~~--~~  196 (439)
                      .-.++|.|++|+||||+|+.+.+.+.. ++              -....+........-.+   ....+.+.+...  .-
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~   87 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN   87 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence            446899999999999999999887643 11              01122233333322222   345566666531  11


Q ss_pred             eEEecCC-CCHHHHHHHh
Q 037205          197 LIFFYDV-TCFSQLESLM  213 (439)
Q Consensus       197 LlVlDdv-~~~~~~~~l~  213 (439)
                      -.|||.+ .+..|.+.|.
T Consensus        88 g~ILDGfPRt~~Qa~~L~  105 (230)
T 3gmt_A           88 GYLFDGFPRTIAQADAMK  105 (230)
T ss_dssp             CEEEESCCCSHHHHHHHH
T ss_pred             CeEecCCCCcHHHHHHHH
Confidence            3577998 5666666654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=94.98  E-value=0.012  Score=52.01  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +.++|+|+.|+|||||++.+...
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            57899999999999999987654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=94.97  E-value=0.013  Score=53.84  Aligned_cols=27  Identities=33%  Similarity=0.386  Sum_probs=23.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|.|.|++|+||||+|+.+...+.
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            356899999999999999999887653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.95  E-value=0.018  Score=51.43  Aligned_cols=37  Identities=27%  Similarity=0.409  Sum_probs=26.8

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+.+...+.  ....+.|.|+|.+|+|||||+..+....
T Consensus        26 a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           26 ADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             HHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344444443  2356889999999999999999877653

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.93  E-value=0.017  Score=51.25  Aligned_cols=24  Identities=29%  Similarity=0.116  Sum_probs=21.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .-.++.|+|.+|+||||||..++.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999998876

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.92  E-value=0.016  Score=51.11  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +|+|.|++|+||||+|+.+...+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            799999999999999999988654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=94.89  E-value=0.015  Score=51.35  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|+|+|+.|+|||||++.+....
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            35689999999999999999987654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.89  E-value=0.015  Score=52.02  Aligned_cols=25  Identities=24%  Similarity=0.194  Sum_probs=21.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .-.+++|+|++|+|||||++.++..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999987653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.84  E-value=0.026  Score=54.72  Aligned_cols=39  Identities=26%  Similarity=0.328  Sum_probs=28.6

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+...+........+|+|+|.+|+|||||+..+...+
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            334444444334567899999999999999999887654

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.83  E-value=0.016  Score=52.01  Aligned_cols=24  Identities=38%  Similarity=0.416  Sum_probs=21.1

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|.|.|++|+||||+|+.+...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999987653

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.81  E-value=0.016  Score=51.58  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.1

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|.|.|++|+||||+|+.+.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g   25 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999988654

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.75  E-value=0.021  Score=52.16  Aligned_cols=26  Identities=19%  Similarity=0.418  Sum_probs=22.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+|+|.|..|.|||||++.+...+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            44689999999999999999887653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.71  E-value=0.021  Score=54.23  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=23.0

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ....+|+|.|..|+|||||++.+..-+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            456799999999999999999877654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.70  E-value=0.02  Score=51.04  Aligned_cols=23  Identities=39%  Similarity=0.453  Sum_probs=20.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      ..+|+|.|+.|+||||+++.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=94.68  E-value=0.015  Score=53.43  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=22.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..|+|+|++|.||||+++.+...+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~lg~   74 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSLGY   74 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            46999999999999999999886543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.68  E-value=0.016  Score=51.58  Aligned_cols=39  Identities=26%  Similarity=0.333  Sum_probs=28.4

Q ss_pred             cchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          120 ESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       120 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +...+.+...+.  ....+.|+|+|.+|+|||||+..+...
T Consensus        15 ~~~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           15 KRLAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             HHHHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            344455555443  235789999999999999999987765

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.68  E-value=0.018  Score=53.81  Aligned_cols=23  Identities=39%  Similarity=0.726  Sum_probs=21.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      ...+|+|.|++|+||||+|+.+.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999999987

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.66  E-value=0.019  Score=51.88  Aligned_cols=27  Identities=22%  Similarity=0.101  Sum_probs=23.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ...|.|.|++|+||||+|+.+.+.+..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l~~   42 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNFCV   42 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            356899999999999999999887643

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.64  E-value=0.017  Score=52.26  Aligned_cols=37  Identities=22%  Similarity=0.188  Sum_probs=26.0

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..|..+|..+-..-.+++|+|.+|+|||||++.++..
T Consensus        11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3444455322223458999999999999999987754

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.63  E-value=0.013  Score=55.07  Aligned_cols=27  Identities=15%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +..+|+|.|..|+||||+|+.+.+.+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456899999999999999999887654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.63  E-value=0.018  Score=51.10  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.+++|+|+.|.|||||++.+..-
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            458999999999999999986543

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.60  E-value=0.02  Score=55.01  Aligned_cols=25  Identities=24%  Similarity=0.314  Sum_probs=22.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|+|.|++|+||||||..++..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            5899999999999999999887753

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=94.60  E-value=0.024  Score=53.94  Aligned_cols=29  Identities=28%  Similarity=0.455  Sum_probs=23.9

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ++.++|+|+|=|||||||.|..+..-+..
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~   74 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI   74 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence            46899999999999999999887765543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.56  E-value=0.022  Score=54.21  Aligned_cols=63  Identities=17%  Similarity=0.143  Sum_probs=37.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH---HHHH--HHHHHHHhcCCCCCC---cHHHHHHHhccCCceEEecCCCC
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR---YLLA--TKLISNLLKDENAIP---GIDLNFRRLSRMKVLIFFYDVTC  205 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~~~--~~ll~~l~~~~~~~~---~~~~l~~~l~~~~~LlVlDdv~~  205 (439)
                      -+++.|+|++|+||||||.+++.....   |+..  .+.    .. ....+   ....+.+.+...+ +||+|++..
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~----v~-~~~~~le~~l~~i~~~l~~~~-LLVIDsI~a  193 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEP----LS-GYNTDFNVFVDDIARAMLQHR-VIVIDSLKN  193 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCS----ST-TCBCCHHHHHHHHHHHHHHCS-EEEEECCTT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhh----hh-hhhcCHHHHHHHHHHHHhhCC-EEEEecccc
Confidence            356789999999999999998865111   2200  000    00 00011   2334455566666 999999964

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.53  E-value=0.024  Score=50.59  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.+++|+|.+|+|||||++.++...
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999987554

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=94.53  E-value=0.022  Score=51.71  Aligned_cols=26  Identities=19%  Similarity=0.397  Sum_probs=22.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..+|+|.|++|.||||+|+.+...+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999987754

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=94.48  E-value=0.025  Score=53.57  Aligned_cols=26  Identities=23%  Similarity=0.207  Sum_probs=22.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+++|+|++|+|||||++.++..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            45699999999999999999877554

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.46  E-value=0.021  Score=50.13  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             EEEEecCCCChhHHHHHHHHhHH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +++|+|..|+|||||++.++...
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58999999999999999887654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.45  E-value=0.017  Score=51.79  Aligned_cols=23  Identities=35%  Similarity=0.687  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|+|||||++.+..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            35799999999999999998664

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.38  E-value=0.028  Score=48.56  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .++++|.|..|+|||||+..+...+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            57899999999999999998876643

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.37  E-value=0.022  Score=54.22  Aligned_cols=25  Identities=32%  Similarity=0.313  Sum_probs=22.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|.|+|++|+||||||..++..+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5899999999999999999887753

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.35  E-value=0.023  Score=59.23  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=36.9

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|.+..++.+...+..+    ..+.|+|++|+||||||+.++...
T Consensus        41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l   84 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELL   84 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred             ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccC
Confidence            56899998888888877633    478999999999999999998754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.32  E-value=0.026  Score=47.91  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .-.+++|.|+.|.|||||++.++.-
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4468999999999999999976543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.28  E-value=0.026  Score=53.02  Aligned_cols=24  Identities=33%  Similarity=0.277  Sum_probs=21.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+|.|.|++|+||||+|+.+....
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999998753

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.27  E-value=0.024  Score=50.96  Aligned_cols=26  Identities=15%  Similarity=0.149  Sum_probs=22.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -.+++|+|+.|+|||||.+.+.....
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            46899999999999999999876543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.23  E-value=0.021  Score=49.21  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=21.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+++|+|..|+|||||++.+...+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5799999999999999998766543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=94.20  E-value=0.044  Score=50.63  Aligned_cols=36  Identities=19%  Similarity=0.161  Sum_probs=26.8

Q ss_pred             HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -+..+|.........|.++|+||.|||.+|..+++.
T Consensus        92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~  127 (267)
T 1u0j_A           92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            355555533233457999999999999999998875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.19  E-value=0.017  Score=52.19  Aligned_cols=22  Identities=32%  Similarity=0.298  Sum_probs=15.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -.+++|+|+.|+|||||++.+.
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999877

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.15  E-value=0.026  Score=55.94  Aligned_cols=26  Identities=19%  Similarity=0.236  Sum_probs=22.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+|.|+|++|+||||+|+.+....
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            46789999999999999999988764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=94.11  E-value=0.041  Score=51.99  Aligned_cols=26  Identities=27%  Similarity=0.286  Sum_probs=22.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+++|+|+.|+||||+++.++..+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35699999999999999999877654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.08  E-value=0.027  Score=53.07  Aligned_cols=27  Identities=22%  Similarity=0.166  Sum_probs=23.0

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+++++|.+|+||||++..++..+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356999999999999999998876654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=94.08  E-value=0.033  Score=50.44  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=23.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|+|.|+.|+||||+++.+...+.
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~~lg   41 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAKDFG   41 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            456899999999999999999887653

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.05  E-value=0.025  Score=54.08  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=23.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .++|.|+|+.|+||||||..++..+.
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCC
Confidence            46899999999999999999987753

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.01  E-value=0.056  Score=51.37  Aligned_cols=38  Identities=18%  Similarity=0.144  Sum_probs=26.9

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +..|..++ .+-..-.++.|.|.+|+||||||..++...
T Consensus        55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34444444 233344689999999999999999987654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=94.00  E-value=0.038  Score=53.96  Aligned_cols=27  Identities=26%  Similarity=0.073  Sum_probs=22.8

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -....+++|+|++|.|||||++.+...
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            344568999999999999999988754

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.96  E-value=0.035  Score=52.57  Aligned_cols=27  Identities=30%  Similarity=0.368  Sum_probs=22.5

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ....+|+|.|..|.|||||++.+....
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            345799999999999999999876543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=93.96  E-value=0.03  Score=52.97  Aligned_cols=25  Identities=20%  Similarity=0.236  Sum_probs=22.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .++|.|.|+.|+||||||..++..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            3578999999999999999988765

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.92  E-value=0.024  Score=51.18  Aligned_cols=25  Identities=20%  Similarity=0.084  Sum_probs=21.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.++.|.|.+|+||||||.+++...
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999876553

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=93.88  E-value=0.087  Score=50.90  Aligned_cols=41  Identities=20%  Similarity=0.126  Sum_probs=30.2

Q ss_pred             hHHHHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          122 RVEEIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       122 ~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -...|...|. .+-..-+++.|+|.+|+||||||.+++....
T Consensus        45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~   86 (356)
T 3hr8_A           45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ   86 (356)
T ss_dssp             SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3455666665 3333457999999999999999999887653

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=93.85  E-value=0.078  Score=51.15  Aligned_cols=41  Identities=20%  Similarity=0.172  Sum_probs=29.3

Q ss_pred             hHHHHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          122 RVEEIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       122 ~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -...|..+|. .+-..-+++.|+|.+|+||||||.+++....
T Consensus        45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~   86 (349)
T 2zr9_A           45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ   86 (349)
T ss_dssp             SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3445555554 2323456899999999999999999876653

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=93.84  E-value=0.038  Score=52.17  Aligned_cols=26  Identities=23%  Similarity=0.103  Sum_probs=22.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|.|.|+.|+||||||..++...
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhC
Confidence            35689999999999999999988765

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=93.78  E-value=0.049  Score=52.29  Aligned_cols=45  Identities=13%  Similarity=0.087  Sum_probs=30.6

Q ss_pred             ccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          117 VGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       117 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|...-...|.+++. +-..-.++.|.|.+|+||||||..++....
T Consensus        27 ~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a   71 (338)
T 4a1f_A           27 TGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSAL   71 (338)
T ss_dssp             CSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            344444445555543 223345889999999999999999887654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=93.77  E-value=0.04  Score=49.76  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=23.0

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .-..|.|.|++|+||||+++.+.+.+.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            346889999999999999999887754

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=93.76  E-value=0.069  Score=53.50  Aligned_cols=38  Identities=16%  Similarity=0.166  Sum_probs=26.7

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...|..++. +-..-.++.|.|.+|+||||||..++...
T Consensus       190 ~~~LD~~~g-Gl~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          190 FTELDRMTS-GFQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             CHHHHHHHS-SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cHHHHhhcC-CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            334444442 22334589999999999999999987664

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=93.73  E-value=0.036  Score=48.83  Aligned_cols=24  Identities=25%  Similarity=0.280  Sum_probs=20.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +.|.|.|.+|+||||||.++..+.
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            568899999999999999877653

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.69  E-value=0.031  Score=49.75  Aligned_cols=23  Identities=30%  Similarity=0.157  Sum_probs=19.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+++|+|+.|.|||||++.++.-
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999987644

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.65  E-value=0.037  Score=50.46  Aligned_cols=24  Identities=17%  Similarity=0.101  Sum_probs=20.8

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .. .+++|+|+.|.|||||.+.++.
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~G   46 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhC
Confidence            45 7899999999999999997654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=93.65  E-value=0.072  Score=53.19  Aligned_cols=43  Identities=21%  Similarity=0.155  Sum_probs=29.0

Q ss_pred             cccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          118 GVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       118 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      |...-...|..++ .+-..-.++.|.|.+|+||||||..++...
T Consensus       182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3333444455555 233334688999999999999999887664

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.64  E-value=0.033  Score=50.63  Aligned_cols=23  Identities=26%  Similarity=0.172  Sum_probs=19.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|.|||||.+.+..
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            45899999999999999997653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=93.58  E-value=0.057  Score=52.30  Aligned_cols=26  Identities=27%  Similarity=0.286  Sum_probs=22.6

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+++|+|+.|+|||||++.++..+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            35799999999999999999887654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.57  E-value=0.032  Score=50.29  Aligned_cols=23  Identities=26%  Similarity=0.138  Sum_probs=19.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|.|||||.+.++.
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999997653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.56  E-value=0.05  Score=54.09  Aligned_cols=27  Identities=33%  Similarity=0.304  Sum_probs=23.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..++|.|+|.+|+||||+|..++..+.
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999887654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.53  E-value=0.047  Score=45.40  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +-|.++|.+|+|||||...+....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999887653

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.53  E-value=0.048  Score=47.49  Aligned_cols=25  Identities=24%  Similarity=-0.064  Sum_probs=20.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .++.|+|++|+||||++..++.+..
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~   28 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYK   28 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999987776653

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=93.51  E-value=0.016  Score=49.44  Aligned_cols=31  Identities=13%  Similarity=0.135  Sum_probs=26.2

Q ss_pred             cccchHHHHHHHHhhh-hcCCCEEEEEeeecC
Q 037205            4 CSLLIGLKLVLFHLTQ-KEHAQIVLPVFYRVD   34 (439)
Q Consensus         4 ~~~~~~~el~~i~~~~-~~~~~~vlPiFy~v~   34 (439)
                      .|.||..||..++.+. +.+++.||||||+.-
T Consensus        85 ~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~  116 (160)
T 2js7_A           85 QSKECDFQTKFALSLSPGAHQKRLIPIKYKAM  116 (160)
T ss_dssp             HSHHHHHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred             cCHHHHHHHHHHHHHHHccCCCEEEEEEEccc
Confidence            4899999999999986 455678999999854

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=93.50  E-value=0.064  Score=54.41  Aligned_cols=44  Identities=7%  Similarity=0.058  Sum_probs=29.5

Q ss_pred             cccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          118 GVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       118 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .|.+..+.+.+..........+|.+.|++|+||||+|+.+..++
T Consensus       376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L  419 (511)
T 1g8f_A          376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF  419 (511)
T ss_dssp             SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence            33333444444442222344789999999999999999987765

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.50  E-value=0.043  Score=51.45  Aligned_cols=25  Identities=20%  Similarity=0.151  Sum_probs=21.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.+++|.|.+|+|||||++.++...
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999877554

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.49  E-value=0.049  Score=49.79  Aligned_cols=25  Identities=24%  Similarity=0.179  Sum_probs=21.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...++.+.|.||+||||++..+...
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~   37 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRY   37 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence            4678889999999999999987644

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=93.49  E-value=0.041  Score=51.19  Aligned_cols=24  Identities=21%  Similarity=0.176  Sum_probs=20.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.++.|+|.+|+|||||+..++..
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            358999999999999999987753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.44  E-value=0.048  Score=47.39  Aligned_cols=24  Identities=17%  Similarity=0.385  Sum_probs=20.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...|+|+|.+|+|||||.+.+...
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            567899999999999999987654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.38  E-value=0.038  Score=50.23  Aligned_cols=25  Identities=20%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.+++|+|..|.|||||++.++.-.
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3589999999999999999886543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=93.37  E-value=0.05  Score=52.55  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=25.4

Q ss_pred             HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |..+|..+-..-.++.|+|.+|+|||||+..++..
T Consensus       120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            33344322334579999999999999999987654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.37  E-value=0.07  Score=46.05  Aligned_cols=25  Identities=20%  Similarity=0.069  Sum_probs=21.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|+|+|.+|+|||||...+...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999988765

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.33  E-value=0.046  Score=49.60  Aligned_cols=25  Identities=24%  Similarity=0.210  Sum_probs=21.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...|.|.|..|+||||+++.+.+.+
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            3578999999999999999877664

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=93.32  E-value=0.082  Score=53.57  Aligned_cols=28  Identities=21%  Similarity=0.152  Sum_probs=22.4

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...++|.|+|.+|+||||++..++..+.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3467999999999999999999886543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.31  E-value=0.044  Score=47.88  Aligned_cols=24  Identities=17%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...|+|+|.+|+|||||.+.+...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            456899999999999999987754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=93.28  E-value=0.048  Score=46.03  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..|+|+|.+|+|||||...+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999987653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.28  E-value=0.04  Score=50.95  Aligned_cols=23  Identities=30%  Similarity=0.292  Sum_probs=19.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|.|||||.+.++.
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999997654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.24  E-value=0.04  Score=51.30  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .+++|+|+.|.|||||++.+..
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            5899999999999999997653

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=93.23  E-value=0.11  Score=51.96  Aligned_cols=25  Identities=28%  Similarity=0.680  Sum_probs=21.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .++|+|.+|+|||||+..+......
T Consensus       153 ~~~i~G~sGvGKTtL~~~l~~~~~~  177 (473)
T 1sky_E          153 KIGLFGGAGVGKTVLIQELIHNIAQ  177 (473)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCccHHHHHHHhhhhh
Confidence            5889999999999999998877553

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.21  E-value=0.046  Score=50.09  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .+++|+|..|.|||||.+.++.
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999997664

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.19  E-value=0.063  Score=49.55  Aligned_cols=95  Identities=16%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhHH------HHHHHHHHHHhcCC-----------CCCCcHHHHHHHhccCCceE
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISRY------LLATKLISNLLKDE-----------NAIPGIDLNFRRLSRMKVLI  198 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~f------~~~~~ll~~l~~~~-----------~~~~~~~~l~~~l~~~~~Ll  198 (439)
                      .-.+++|+|+.|.|||||++.+...+...      +.-.. +..+....           ........+.+.|...+=+|
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il  102 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI  102 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence            34689999999999999999887654320      00000 00000000           00012345666677778888


Q ss_pred             EecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHH
Q 037205          199 FFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQV  234 (439)
Q Consensus       199 VlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v  234 (439)
                      ++|+..+.+....+....   ..|.-|++||.+...
T Consensus       103 llDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~  135 (261)
T 2eyu_A          103 FVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA  135 (261)
T ss_dssp             EESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred             EeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence            889987665544433321   246667888876543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.18  E-value=0.043  Score=50.00  Aligned_cols=22  Identities=32%  Similarity=0.359  Sum_probs=19.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .+++|+|+.|.|||||.+.++.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999997654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=93.17  E-value=0.038  Score=47.62  Aligned_cols=22  Identities=36%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|+|+|.+|+|||||...+...
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.14  E-value=0.043  Score=50.53  Aligned_cols=24  Identities=25%  Similarity=0.140  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.+++|+|+.|.|||||.+.++.-
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999976543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.10  E-value=0.044  Score=50.81  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=19.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|.|||||++.+..
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            35899999999999999997654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=93.09  E-value=0.075  Score=54.53  Aligned_cols=26  Identities=31%  Similarity=0.493  Sum_probs=22.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -.+|+|+|+.|.|||||++.+...+.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHhhc
Confidence            46899999999999999999887653

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.05  E-value=0.05  Score=50.42  Aligned_cols=23  Identities=26%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|..|.|||||++.++.
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999997664

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.05  E-value=0.045  Score=50.62  Aligned_cols=23  Identities=26%  Similarity=0.198  Sum_probs=19.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|.|||||++.++.
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHc
Confidence            45899999999999999997654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=93.02  E-value=0.056  Score=52.94  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=22.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|+|.|+.|+||||||..++..+.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            5789999999999999999887653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.00  E-value=0.047  Score=49.97  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=19.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|..|.|||||++.++.
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999997654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.00  E-value=0.047  Score=49.33  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.+++|+|+.|.|||||.+.++.-
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999987654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=92.99  E-value=0.14  Score=49.59  Aligned_cols=42  Identities=17%  Similarity=0.117  Sum_probs=29.2

Q ss_pred             chHHHHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          121 SRVEEIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       121 ~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .-...|..+|. .+-..-+++.|+|.+|+||||||.+++....
T Consensus        46 TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~   88 (356)
T 1u94_A           46 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   88 (356)
T ss_dssp             CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            33445555554 2223456899999999999999999876643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=92.98  E-value=0.039  Score=49.33  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .+++|+|+.|.|||||.+.++.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999997654

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=92.96  E-value=0.063  Score=54.75  Aligned_cols=27  Identities=19%  Similarity=0.222  Sum_probs=23.6

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|.++|++|.||||+|+.+...+.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456899999999999999999987764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=92.95  E-value=0.051  Score=49.55  Aligned_cols=25  Identities=24%  Similarity=0.094  Sum_probs=20.8

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .-.+++|+|..|.|||||.+.++.-
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999976543

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=92.95  E-value=0.066  Score=48.18  Aligned_cols=25  Identities=20%  Similarity=0.113  Sum_probs=21.3

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|.+.|.||+||||+|..++.....
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~~l~~   32 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAHAQLR   32 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHH
Confidence            4778999999999999988877654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=92.93  E-value=0.072  Score=44.50  Aligned_cols=24  Identities=17%  Similarity=0.350  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|.|+|.+|+|||||...+...
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            446789999999999999987654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=92.93  E-value=0.1  Score=50.09  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=23.0

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ....+++|+|.+|+|||||.+.+....
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            456799999999999999999887544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=92.92  E-value=0.099  Score=50.21  Aligned_cols=28  Identities=29%  Similarity=0.331  Sum_probs=23.7

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..+..+|+|+|.+|+|||||+..+....
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999887654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.90  E-value=0.049  Score=50.15  Aligned_cols=23  Identities=35%  Similarity=0.385  Sum_probs=19.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|.|||||.+.++.
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999997653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=92.89  E-value=0.049  Score=48.42  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|+|.|+.|+||||+|+.+...+.
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g   28 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELS   28 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4689999999999999999887653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=92.87  E-value=0.074  Score=50.02  Aligned_cols=27  Identities=30%  Similarity=0.161  Sum_probs=22.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+++|+|.+|+||||++..++..+.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999998876654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=92.87  E-value=0.068  Score=45.83  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=20.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...|+|+|.+|+|||||...+...
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999998763

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.87  E-value=0.069  Score=45.05  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=20.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+|+|.+|+|||||...+...
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC
Confidence            456889999999999999987654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=92.83  E-value=0.051  Score=50.15  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=19.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|.|||||++.++.
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999997653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=92.82  E-value=0.055  Score=44.93  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=18.8

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.++|.+|+|||||+..+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999887644

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=92.80  E-value=0.052  Score=50.45  Aligned_cols=24  Identities=25%  Similarity=0.238  Sum_probs=20.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.+++|+|..|.|||||++.++.-
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999976543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=92.77  E-value=0.058  Score=50.99  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=21.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .-.+++|+|+.|.|||||++.+..-
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhh
Confidence            4468999999999999999987654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=92.75  E-value=0.087  Score=45.17  Aligned_cols=26  Identities=19%  Similarity=0.314  Sum_probs=21.7

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .....|+|+|.+|+|||||...+...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            34567889999999999999987654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=92.75  E-value=0.053  Score=49.69  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=19.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+++|+|+.|.|||||.+.++.-
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            47999999999999999976543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=92.71  E-value=0.054  Score=50.16  Aligned_cols=23  Identities=26%  Similarity=0.219  Sum_probs=19.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|..|.|||||.+.++.
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            35899999999999999997653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=92.66  E-value=0.055  Score=50.51  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.+++|+|+.|.|||||.+.++.-
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            358999999999999999976543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=92.64  E-value=0.056  Score=49.67  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=19.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+++|+|+.|.|||||.+.++.-
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999976643

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=92.64  E-value=0.1  Score=50.14  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=27.1

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..|..+|..+-..-.++.|+|.+|+||||||..++..
T Consensus       109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3445555433344578999999999999999987754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.55  E-value=0.066  Score=46.09  Aligned_cols=23  Identities=30%  Similarity=0.650  Sum_probs=19.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      --|+++|.+|+|||||+..+...
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            45789999999999999987654

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=92.54  E-value=0.041  Score=49.74  Aligned_cols=24  Identities=33%  Similarity=0.220  Sum_probs=20.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.++.|.|.+|+|||+||.+++..
T Consensus        30 G~l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           30 GTTVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            458899999999999999986543

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=92.53  E-value=0.14  Score=52.85  Aligned_cols=27  Identities=26%  Similarity=0.275  Sum_probs=23.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|.|.|++|+||||+|+.+.+.+.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            346899999999999999999888764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=92.49  E-value=0.06  Score=48.52  Aligned_cols=24  Identities=29%  Similarity=0.180  Sum_probs=20.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .-.+|+|.|+.|.|||||++.+..
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~   42 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEK   42 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999997654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=92.46  E-value=0.075  Score=44.98  Aligned_cols=25  Identities=28%  Similarity=0.173  Sum_probs=21.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|+|+|.+|+|||||...+...
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567889999999999999987653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=92.46  E-value=0.075  Score=46.64  Aligned_cols=41  Identities=22%  Similarity=0.275  Sum_probs=19.7

Q ss_pred             cccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          118 GVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       118 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |+..-.+.+.++..  ....--|+|+|.+|+|||||...+.+.
T Consensus        13 ~~~~~~~~m~~~~~--~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           13 GLVPRGSHMENLYF--QGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcccchhHHHhHhh--cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            34444444444333  223456789999999999999876643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=92.46  E-value=0.098  Score=44.28  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=21.7

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....-|+|+|.+|+|||||...+...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567899999999999999887654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=92.44  E-value=0.082  Score=44.80  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4567889999999999999887654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=92.40  E-value=0.061  Score=52.91  Aligned_cols=37  Identities=14%  Similarity=0.175  Sum_probs=26.4

Q ss_pred             hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHH
Q 037205          122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -+..|..+|..+-..-.++.|+|.+|+|||||+..++
T Consensus       163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence            3445555564322334689999999999999999765

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.40  E-value=0.1  Score=43.38  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+++|.+|+|||||...+...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            346889999999999999887654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=92.40  E-value=0.043  Score=50.54  Aligned_cols=26  Identities=19%  Similarity=0.127  Sum_probs=22.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ....|.|.|..|+||||+|+.+.+.+
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            45789999999999999999877664

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=92.38  E-value=0.036  Score=57.55  Aligned_cols=48  Identities=15%  Similarity=0.009  Sum_probs=33.9

Q ss_pred             CCcccccchHHHHHhhhccCCCC---------eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          114 SQLVGVESRVEEIESLLSVESKD---------VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~---------~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +.++|.+...+.+...|..+...         -.-|.++|.+|+|||+||+.+++..
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~  351 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA  351 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred             chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence            56899988766665555422100         0157899999999999999988664

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.38  E-value=0.073  Score=44.41  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=19.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|+|+|.+|+|||||...+.+.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999987653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.37  E-value=0.081  Score=46.72  Aligned_cols=25  Identities=20%  Similarity=0.069  Sum_probs=21.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|.|+|.+|+|||||...+...
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567889999999999999987754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=92.36  E-value=0.073  Score=44.27  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=18.9

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|+|+|.+|+|||||...+...
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999887644

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.34  E-value=0.078  Score=44.19  Aligned_cols=21  Identities=29%  Similarity=0.211  Sum_probs=18.4

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |+++|.+|+|||||...+...
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999987643

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.29  E-value=0.072  Score=45.97  Aligned_cols=26  Identities=12%  Similarity=0.351  Sum_probs=22.1

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .....|+|+|.+|+|||||...+...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34677899999999999999988765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=92.26  E-value=0.08  Score=49.12  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.1

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .++|+|..|+|||||.+.++....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999887653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.26  E-value=0.071  Score=44.59  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=18.9

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.++|.+|+|||||...+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999887644

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.25  E-value=0.076  Score=44.51  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=19.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|+|+|.+|+|||||...+...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            456889999999999999886644

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.25  E-value=0.071  Score=44.66  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      --|+|+|.+|+|||||...+.+.
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            45889999999999999987654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.23  E-value=0.073  Score=44.60  Aligned_cols=23  Identities=26%  Similarity=0.703  Sum_probs=19.4

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      --|+|+|.+|+|||||...+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35789999999999999987653

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=92.21  E-value=0.075  Score=45.10  Aligned_cols=32  Identities=6%  Similarity=-0.301  Sum_probs=27.8

Q ss_pred             cccchHHHHHHHHhhh-hcCCCEEEEEeeecCc
Q 037205            4 CSLLIGLKLVLFHLTQ-KEHAQIVLPVFYRVDP   35 (439)
Q Consensus         4 ~~~~~~~el~~i~~~~-~~~~~~vlPiFy~v~p   35 (439)
                      .|.||..|+..++.|. +.++..||||||.-.|
T Consensus        82 ~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           82 RRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             TTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             cChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence            5899999999999987 6778899999998544

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=92.21  E-value=0.12  Score=48.90  Aligned_cols=23  Identities=13%  Similarity=-0.022  Sum_probs=20.2

Q ss_pred             EEEEecCCCChhHHHHHHHHhHH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ++.|+|.+|+||||||.+++...
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999876554

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.17  E-value=0.088  Score=44.57  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=21.6

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +...-|+|+|.+|+|||||...+...
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Confidence            34567899999999999999987654

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=92.16  E-value=0.081  Score=46.72  Aligned_cols=27  Identities=15%  Similarity=0.069  Sum_probs=24.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..+|.|.|+.|+||||+|+.+++++.-
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~   32 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNI   32 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence            358999999999999999999988764

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=92.16  E-value=0.1  Score=46.49  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=22.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -..|.|.|+.|+||||+++.+.+.+.
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999887764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=92.15  E-value=0.058  Score=53.24  Aligned_cols=26  Identities=19%  Similarity=0.266  Sum_probs=22.3

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +...+++|+|..|+|||||.+.+...
T Consensus        67 ~~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           67 SSVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence            35668999999999999999987763

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=92.15  E-value=0.075  Score=45.61  Aligned_cols=24  Identities=17%  Similarity=0.144  Sum_probs=20.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|.|+|.+|+|||||...+...
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999987654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.13  E-value=0.072  Score=45.39  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=19.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..|+|+|.+|+|||||...+...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999988754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=92.11  E-value=0.083  Score=44.73  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .--|+|+|.+|+|||||...+....
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCc
Confidence            4468899999999999999987653

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=92.10  E-value=0.11  Score=46.64  Aligned_cols=28  Identities=18%  Similarity=-0.053  Sum_probs=23.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .-.++.|+|.+|+||||++..+.++...
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~~~   38 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRLEY   38 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            3468889999999999999998887754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=92.08  E-value=0.093  Score=52.77  Aligned_cols=27  Identities=19%  Similarity=0.160  Sum_probs=23.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..+|.++|++|+||||+|+.+...+..
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~   65 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNF   65 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            457889999999999999999887653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=92.06  E-value=0.073  Score=49.20  Aligned_cols=21  Identities=43%  Similarity=0.427  Sum_probs=18.8

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q 037205          138 YALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      .+++|+|..|.|||||.+.++
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~   51 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAIS   51 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            479999999999999999755

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=92.06  E-value=0.096  Score=48.09  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=20.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|+|.|-||+||||+|..++..+.
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la   26 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHH
Confidence            5788889999999999998776653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.99  E-value=0.074  Score=44.47  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=18.9

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|+|+|.+|+|||||...+.+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            4789999999999999987643

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=91.97  E-value=0.085  Score=50.16  Aligned_cols=24  Identities=29%  Similarity=0.374  Sum_probs=21.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .+++++|.|+.|.|||||.+.+..
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~   26 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILN   26 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred             cccEEEEEecCCCCHHHHHHHHHh
Confidence            478999999999999999997653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.95  E-value=0.11  Score=43.53  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      --|+|+|.+|+|||||...+..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999998864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=91.95  E-value=0.085  Score=45.46  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=19.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|.|+|.+|+|||||...+.+.
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            446789999999999999876654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=91.93  E-value=0.089  Score=43.96  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=19.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      --|+|+|.+|+|||||...+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45789999999999999887653

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=91.91  E-value=0.15  Score=50.79  Aligned_cols=42  Identities=21%  Similarity=0.147  Sum_probs=29.1

Q ss_pred             cchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          120 ESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       120 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..-...|.+++. +-..-.++.|.|.+|+||||||..++....
T Consensus       181 ~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a  222 (444)
T 3bgw_A          181 PSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMS  222 (444)
T ss_dssp             CCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence            333444444442 233446899999999999999999887654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=91.90  E-value=0.086  Score=45.26  Aligned_cols=21  Identities=33%  Similarity=0.392  Sum_probs=19.0

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      +.+|+|..|.|||||+.+++-
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999998764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=91.89  E-value=0.085  Score=45.40  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=19.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|.|+|.+|+|||||.+.+.+.
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhh
Confidence            456889999999999999765543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=91.89  E-value=0.089  Score=44.48  Aligned_cols=24  Identities=21%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+|+|.+|+|||||...+...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            456889999999999999987644

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=91.87  E-value=0.12  Score=46.35  Aligned_cols=27  Identities=30%  Similarity=0.321  Sum_probs=23.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ....|.|.|+.|+||||+++.+.+.+.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            356889999999999999999887753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=91.86  E-value=0.067  Score=50.58  Aligned_cols=23  Identities=39%  Similarity=0.523  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|..|.|||||++.+..
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCchHHHHHHHHHc
Confidence            45899999999999999998764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=91.86  E-value=0.12  Score=49.71  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=23.0

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+..+|+|+|.+|+|||||...+....
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            347899999999999999999887643

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=91.84  E-value=0.16  Score=52.14  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=23.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|.+.|++|+||||+|+.+...+.
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            356899999999999999999988764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.83  E-value=0.09  Score=45.36  Aligned_cols=24  Identities=29%  Similarity=0.409  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|.|+|.+|+|||||...+.+.
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            346789999999999999887654

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=91.79  E-value=0.11  Score=48.33  Aligned_cols=25  Identities=32%  Similarity=0.585  Sum_probs=21.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|+|.|-||+||||+|..++..+.
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La   27 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALA   27 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHH
Confidence            6788899999999999998876654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=91.76  E-value=0.12  Score=43.62  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=21.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|.|+|.+|+|||||...+...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3567889999999999999987654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=91.76  E-value=0.086  Score=44.95  Aligned_cols=25  Identities=36%  Similarity=0.648  Sum_probs=20.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|.|+|.+|+|||||...+.+.
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3556889999999999999987754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=91.74  E-value=0.1  Score=47.12  Aligned_cols=26  Identities=31%  Similarity=0.308  Sum_probs=19.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -..|.|-|+.|+||||+++.+.+.+.
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999887764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=91.74  E-value=0.1  Score=49.72  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=26.0

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..|..+|..+-..-.++.|+|.+|+||||||.+++..
T Consensus        94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A           94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            3444455322223468999999999999999987754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=91.73  E-value=0.11  Score=45.30  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=20.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4567889999999999999887654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=91.73  E-value=0.11  Score=49.40  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=26.3

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..|..+|..+-..-.++.|+|.+|+||||||.+++..
T Consensus        85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3444455322233568999999999999999987754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=91.70  E-value=0.091  Score=45.14  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=20.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|+|+|.+|+|||||...+...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcC
Confidence            3457889999999999999987654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.67  E-value=0.077  Score=45.04  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=19.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      --|.++|.+|+|||||...+.+.
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45789999999999999987654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=91.67  E-value=0.11  Score=44.31  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=20.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|.|+|.+|+|||||...+.+.
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3557889999999999999987654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=91.66  E-value=0.11  Score=44.64  Aligned_cols=22  Identities=32%  Similarity=0.406  Sum_probs=19.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      +-|.|.|.+|+||||||.++..
T Consensus        17 ~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999998654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=91.64  E-value=0.1  Score=50.51  Aligned_cols=25  Identities=16%  Similarity=0.183  Sum_probs=21.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...++|+|..|.|||||++.+...+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999876554

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.63  E-value=0.09  Score=44.94  Aligned_cols=23  Identities=26%  Similarity=0.556  Sum_probs=19.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      --|+|+|.+|+|||||...+.+.
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35789999999999999987654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=91.61  E-value=0.089  Score=50.86  Aligned_cols=23  Identities=39%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|.|+.|.|||||.+.++-
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCchHHHHHHHHhc
Confidence            35899999999999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=91.61  E-value=0.092  Score=45.45  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=19.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..|+++|.+|+|||||...+.+.
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999987653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=91.56  E-value=0.12  Score=43.08  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=19.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .-|+|+|.+|+|||||...+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            45889999999999999987644

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=91.56  E-value=0.15  Score=46.90  Aligned_cols=35  Identities=17%  Similarity=0.337  Sum_probs=24.8

Q ss_pred             HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +.+.+.........|+|+|.+|+|||||...+...
T Consensus        25 ~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           25 FFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             HHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            33333333335567899999999999999887654

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=91.55  E-value=0.13  Score=53.42  Aligned_cols=27  Identities=26%  Similarity=0.324  Sum_probs=23.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...+|.|.|++|+||||+|+.+.+.+.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~   77 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLV   77 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999988863

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=91.51  E-value=0.042  Score=47.62  Aligned_cols=29  Identities=7%  Similarity=0.124  Sum_probs=20.9

Q ss_pred             cccchHHHHHHHHhh-hhcCCCEEEEEeee
Q 037205            4 CSLLIGLKLVLFHLT-QKEHAQIVLPVFYR   32 (439)
Q Consensus         4 ~~~~~~~el~~i~~~-~~~~~~~vlPiFy~   32 (439)
                      .|.||..||..++.+ .+.+++.||||||+
T Consensus       104 ~S~wc~~El~~a~~~~~~~~~~~vIpV~~~  133 (178)
T 2j67_A          104 QNEWCHYEFYFAHHNLFHENSDHIILILLE  133 (178)
T ss_dssp             HHTGGGTHHHHTTCC-------CEEEEESS
T ss_pred             ccchHHHHHHHHHHHHHhcCCCEEEEEEec
Confidence            489999999999975 46677889999997

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=91.50  E-value=0.12  Score=46.88  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...|.|.|+.|+||||+++.+.+.+.
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999887764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=91.48  E-value=0.11  Score=45.16  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      ..-|.|+|.+|+|||||...+..
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34688999999999999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.46  E-value=0.086  Score=45.14  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=18.8

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|+|+|.+|+|||||...+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999887643

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=91.45  E-value=0.14  Score=42.91  Aligned_cols=24  Identities=33%  Similarity=0.302  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...|+|+|.+|+|||||...+...
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            456889999999999999887543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=91.45  E-value=0.087  Score=49.42  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.+++|+|..|.|||||.+.++.-.
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            4589999999999999999886543

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=91.44  E-value=0.1  Score=50.59  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -.+++|+|+.|.|||||.+.+.
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~   75 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVN   75 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEcCCCchHHHHHHHHh
Confidence            4589999999999999999876

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=91.42  E-value=0.098  Score=44.53  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=20.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+|+|.+|+|||||...+...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            456889999999999999887654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=91.39  E-value=0.11  Score=44.15  Aligned_cols=23  Identities=22%  Similarity=0.193  Sum_probs=19.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      --|+|+|.+|+|||||...+...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45789999999999999887654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=91.37  E-value=0.1  Score=50.35  Aligned_cols=23  Identities=39%  Similarity=0.455  Sum_probs=20.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|.|+.|.|||||.+.++-
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaG   63 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAG   63 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            35899999999999999998763

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=91.36  E-value=0.15  Score=44.89  Aligned_cols=26  Identities=19%  Similarity=0.149  Sum_probs=22.4

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+|+|+|++|+||+|+|..+.+.+
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRL   35 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHc
Confidence            45799999999999999999887644

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=91.35  E-value=0.14  Score=43.76  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=20.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcC
Confidence            3557889999999999999887653

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=91.33  E-value=0.14  Score=49.86  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=22.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .-.+++|+|+.|.|||||++.+...+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34689999999999999999887654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.32  E-value=0.11  Score=44.86  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=20.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .--|+|+|.+|+|||||...+....
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCC
Confidence            4468899999999999999877543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.32  E-value=0.11  Score=45.06  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|+|+|.+|+|||||...+...
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456789999999999999887654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.31  E-value=0.14  Score=44.00  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|.|+|.+|+|||||...+...
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4567899999999999999887654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.30  E-value=0.11  Score=44.04  Aligned_cols=24  Identities=21%  Similarity=0.212  Sum_probs=20.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|.|+|.+|+|||||...+...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            456889999999999999887654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=91.28  E-value=0.13  Score=45.18  Aligned_cols=25  Identities=16%  Similarity=0.100  Sum_probs=20.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999987654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.28  E-value=0.098  Score=44.18  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=19.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      --|+|+|.+|+|||||...+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45789999999999999987643

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=91.25  E-value=0.28  Score=47.55  Aligned_cols=43  Identities=21%  Similarity=0.129  Sum_probs=29.7

Q ss_pred             cchHHHHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          120 ESRVEEIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       120 ~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..-...|..+|. .+-..-+++.|+|.+|+||||||..++....
T Consensus        56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~   99 (366)
T 1xp8_A           56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ   99 (366)
T ss_dssp             CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence            334445555554 2222345888999999999999999877653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=91.23  E-value=0.11  Score=45.24  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             CeeEEEEecCCCChhHHHHHHHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      ...-|.|+|.+|+|||||...+.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            45678899999999999999874

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=91.21  E-value=0.17  Score=46.59  Aligned_cols=26  Identities=19%  Similarity=0.473  Sum_probs=21.5

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .....|+++|.+|+|||||...+...
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            34567889999999999999887654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=91.19  E-value=0.11  Score=50.25  Aligned_cols=23  Identities=26%  Similarity=0.185  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|.|+.|.|||||.+.++.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEEcCCCchHHHHHHHHHC
Confidence            35899999999999999998764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.18  E-value=0.12  Score=43.83  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=20.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|+|+|.+|+|||||...+...
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            456889999999999999887643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=91.17  E-value=0.11  Score=50.61  Aligned_cols=23  Identities=26%  Similarity=0.221  Sum_probs=20.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|.|||||.+.++-
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEEcCCCchHHHHHHHHHc
Confidence            35899999999999999998874

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=91.15  E-value=0.12  Score=43.94  Aligned_cols=25  Identities=16%  Similarity=0.340  Sum_probs=20.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|+|+|.+|+|||||...+.+.
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            3567889999999999999887643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.15  E-value=0.15  Score=43.86  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=20.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3557889999999999999987654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.10  E-value=0.15  Score=44.23  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3567889999999999999887644

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.09  E-value=0.16  Score=43.25  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=18.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      --|+++|.+|+|||||...+.+
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4578999999999999987654

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=91.08  E-value=0.11  Score=50.21  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|.|+.|.|||||.+.++.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCchHHHHHHHHhc
Confidence            45899999999999999998863

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=91.06  E-value=0.1  Score=50.30  Aligned_cols=23  Identities=26%  Similarity=0.143  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|.|+.|.|||||.+.++.
T Consensus        26 Ge~~~llGpnGsGKSTLLr~iaG   48 (348)
T 3d31_A           26 GEYFVILGPTGAGKTLFLELIAG   48 (348)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCccHHHHHHHHHc
Confidence            35899999999999999998763

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=91.01  E-value=0.12  Score=50.35  Aligned_cols=22  Identities=32%  Similarity=0.246  Sum_probs=19.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -.+++|.|+.|.|||||.+.++
T Consensus        29 Ge~~~llGpnGsGKSTLLr~ia   50 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIA   50 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHH
Confidence            3589999999999999999876

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=90.99  E-value=0.14  Score=45.91  Aligned_cols=27  Identities=11%  Similarity=0.091  Sum_probs=24.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..+|+|.|+.|+||||+|+.+++.+..
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~   40 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGI   40 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence            468999999999999999999988654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=90.93  E-value=0.13  Score=44.34  Aligned_cols=24  Identities=25%  Similarity=0.230  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+|+|.+|+|||||...+...
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            346889999999999999887643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=90.93  E-value=0.12  Score=45.09  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=21.0

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhC
Confidence            3556889999999999999987654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=90.93  E-value=0.15  Score=46.03  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .....|+|+|.+|+|||||...+...
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC
Confidence            34667899999999999999987754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=90.92  E-value=0.12  Score=44.51  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=20.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+|+|.+|+|||||...+...
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            457889999999999999887644

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.92  E-value=0.12  Score=45.39  Aligned_cols=25  Identities=24%  Similarity=0.410  Sum_probs=20.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3567889999999999999987654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=90.92  E-value=0.15  Score=50.37  Aligned_cols=28  Identities=29%  Similarity=0.144  Sum_probs=23.6

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ...+++++|.+|+||||++..++..+..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~  124 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG  124 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4578999999999999999988876643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=90.92  E-value=0.13  Score=44.49  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=20.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|.|+|.+|+|||||...+...
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            456789999999999999887654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=90.92  E-value=0.097  Score=45.70  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=19.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..|+|+|.+|+|||||...+...
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            45789999999999999987654

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=90.90  E-value=0.16  Score=50.77  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.+.|.|.+|.||||++..+...+.
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~l~   70 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEALI   70 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3889999999999999998887664

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=90.89  E-value=0.12  Score=50.22  Aligned_cols=23  Identities=35%  Similarity=0.271  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|.|+.|.|||||.+.++.
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHHc
Confidence            45899999999999999998763

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=90.88  E-value=0.12  Score=44.67  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=20.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|+|+|.+|+|||||...+...
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            456889999999999999987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=90.86  E-value=0.12  Score=44.94  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=20.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+|+|.+|+|||||...+...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            456889999999999999887654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=90.86  E-value=0.17  Score=44.21  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             eEEEEe-cCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIW-GIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~-G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|+|+ +-||+||||+|..++..+.
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la   27 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALS   27 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHH
Confidence            578888 5799999999998876654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=90.83  E-value=0.13  Score=45.25  Aligned_cols=24  Identities=21%  Similarity=0.129  Sum_probs=19.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...|+|+|.+|+|||||...+...
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456889999999999999987654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=90.80  E-value=0.13  Score=44.29  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|.|+|.+|+|||||...+.+.
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            456889999999999999887654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=90.79  E-value=0.07  Score=46.79  Aligned_cols=25  Identities=12%  Similarity=0.159  Sum_probs=20.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|+|+|.+|+|||||.+.+...
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3467999999999999999887654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=90.76  E-value=0.18  Score=43.36  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=20.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|+|+|.+|+|||||...+...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            446889999999999999987654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=90.75  E-value=0.12  Score=44.92  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=19.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|.|+|.+|+|||||...+.+.
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            446789999999999999987754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=90.74  E-value=0.13  Score=44.44  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=21.6

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .....|.|+|.+|+|||||...+...
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            34678899999999999999987654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=90.73  E-value=0.094  Score=50.65  Aligned_cols=23  Identities=39%  Similarity=0.461  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|.|||||.+.++-
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            35899999999999999998763

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=90.70  E-value=0.16  Score=45.23  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=22.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..|.+-|+.|+||||+++.+.+.+.
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999887764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=90.69  E-value=0.13  Score=44.28  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            356889999999999999987654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=90.67  E-value=0.14  Score=45.63  Aligned_cols=25  Identities=12%  Similarity=0.159  Sum_probs=21.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|+|+|.+|+|||||...+...
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567889999999999999988754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.65  E-value=0.14  Score=44.54  Aligned_cols=25  Identities=16%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3567889999999999999988754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.64  E-value=0.19  Score=42.74  Aligned_cols=24  Identities=33%  Similarity=0.314  Sum_probs=20.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      ....|+|+|.+|+|||||...+..
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            456788999999999999988763

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=90.59  E-value=0.15  Score=47.96  Aligned_cols=26  Identities=15%  Similarity=0.266  Sum_probs=22.1

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...+.|+|+|.+|+|||||...+...
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence            35678999999999999999987654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=90.59  E-value=0.12  Score=44.89  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            456789999999999999876654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=90.58  E-value=0.18  Score=47.45  Aligned_cols=31  Identities=23%  Similarity=0.373  Sum_probs=24.6

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHH
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      ++++...+.     -.+++|.|++|+|||||.+.+.
T Consensus       156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence            566666654     2478999999999999999866

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=90.52  E-value=0.11  Score=48.94  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=18.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|+|+|.+|+|||||.+.++..
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4589999999999999997753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=90.48  E-value=0.12  Score=44.09  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=20.8

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4567889999999999999887643

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.48  E-value=0.12  Score=45.03  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3556889999999999999988754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.46  E-value=0.11  Score=44.21  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=10.8

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEEECCCCC------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3556889999999999999887654

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=90.44  E-value=0.025  Score=47.54  Aligned_cols=33  Identities=12%  Similarity=0.161  Sum_probs=26.5

Q ss_pred             cccchHHHHHHHHh-hhhcCCCEEEEEeee-cCcc
Q 037205            4 CSLLIGLKLVLFHL-TQKEHAQIVLPVFYR-VDPS   36 (439)
Q Consensus         4 ~~~~~~~el~~i~~-~~~~~~~~vlPiFy~-v~ps   36 (439)
                      .|.||..||..++. +.+.++..||||||+ +++.
T Consensus        74 ~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~  108 (149)
T 1fyx_A           74 KSEWXKYELDFSHFRLFDENNDAAILILLEPIEKK  108 (149)
T ss_dssp             HHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTT
T ss_pred             ccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChh
Confidence            48999999999985 556677889999996 5543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=90.39  E-value=0.15  Score=47.90  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=21.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|+|+|.+|+|||||...+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3568999999999999999987654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=90.38  E-value=0.19  Score=43.07  Aligned_cols=25  Identities=16%  Similarity=0.298  Sum_probs=20.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3457889999999999999887643

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.30  E-value=0.19  Score=43.84  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            3457889999999999999887654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=90.30  E-value=0.15  Score=45.37  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      ..-|.|+|.+|+|||||...+..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            45688999999999999988763

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=90.28  E-value=0.12  Score=44.09  Aligned_cols=24  Identities=29%  Similarity=0.164  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+|+|.+|+|||||...+...
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            346889999999999999987654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=90.25  E-value=0.17  Score=45.22  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=22.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -..|.+-|+.|+||||+++.+.+.+.
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35788999999999999999887754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.24  E-value=0.2  Score=43.21  Aligned_cols=23  Identities=26%  Similarity=0.622  Sum_probs=19.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      ..-|+|+|.+|+|||||...+..
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHc
Confidence            45678999999999999998765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=90.21  E-value=0.14  Score=50.05  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|+|||||.+.++.
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhC
Confidence            45899999999999999998863

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=90.16  E-value=0.13  Score=45.38  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|+|+|.+|+|||||...+.+.
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            456889999999999999987654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=90.13  E-value=0.12  Score=44.69  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..-|+|+|.+|+|||||...+....
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            4468899999999999999887543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=90.13  E-value=0.17  Score=46.75  Aligned_cols=24  Identities=29%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...|+|+|.+|+|||||...+...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999988654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.10  E-value=0.15  Score=43.89  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            457889999999999999887654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.06  E-value=0.16  Score=44.33  Aligned_cols=24  Identities=17%  Similarity=0.358  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+|+|.+|+|||||...+...
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456889999999999999887643

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=90.05  E-value=0.25  Score=47.99  Aligned_cols=28  Identities=21%  Similarity=0.220  Sum_probs=23.0

Q ss_pred             CCCeeEEEEec-CCCChhHHHHHHHHhHH
Q 037205          134 SKDVYALGIWG-IGGIGKTTIARATFDKI  161 (439)
Q Consensus       134 ~~~~~vi~I~G-~gGiGKTtLA~~v~~~~  161 (439)
                      ....++|+|+| -||+||||+|..++..+
T Consensus       140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~L  168 (373)
T 3fkq_A          140 NDKSSVVIFTSPCGGVGTSTVAAACAIAH  168 (373)
T ss_dssp             TTSCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCChHHHHHHHHHHHH
Confidence            34578999985 89999999999877654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=90.05  E-value=0.16  Score=48.97  Aligned_cols=26  Identities=27%  Similarity=0.415  Sum_probs=22.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -.+++|+|..|+|||||.+.+.....
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35799999999999999998887654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=90.03  E-value=0.16  Score=44.61  Aligned_cols=24  Identities=21%  Similarity=0.174  Sum_probs=19.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|.|+|.+|+|||||...+.+.
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            456889999999999999876643

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=90.03  E-value=0.15  Score=45.45  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=18.7

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.|+|.+|+|||+|...+.+.
T Consensus        15 KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCcCHHHHHHHHHhC
Confidence            4679999999999999987644

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.02  E-value=0.2  Score=42.93  Aligned_cols=25  Identities=28%  Similarity=0.170  Sum_probs=21.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|+|+|.+|+|||||...+...
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4567889999999999999987743

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=90.01  E-value=0.14  Score=44.26  Aligned_cols=23  Identities=26%  Similarity=0.176  Sum_probs=19.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      ..-|+|+|.+|+|||||...+..
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHh
Confidence            45688999999999999998754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.98  E-value=0.16  Score=44.52  Aligned_cols=24  Identities=25%  Similarity=0.177  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+|+|.+|+|||||...+...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcC
Confidence            346889999999999999887654

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=89.97  E-value=0.17  Score=45.61  Aligned_cols=22  Identities=41%  Similarity=0.691  Sum_probs=18.8

Q ss_pred             EEEecCCCChhHHHHHHHHhHH
Q 037205          140 LGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      |+|.|-||+||||+|..++..+
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~l   24 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIM   24 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHH
Confidence            5668999999999999877654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=89.86  E-value=0.17  Score=44.15  Aligned_cols=24  Identities=29%  Similarity=0.190  Sum_probs=19.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..-|+|+|.+|+|||||...+...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346889999999999999876643

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=89.78  E-value=0.2  Score=44.58  Aligned_cols=24  Identities=42%  Similarity=0.519  Sum_probs=20.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      ....|||+|..|+||||+++.+..
T Consensus         8 ~~~~iglTGgigsGKStv~~~l~~   31 (210)
T 4i1u_A            8 HMYAIGLTGGIGSGKTTVADLFAA   31 (210)
T ss_dssp             SCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998765

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=89.77  E-value=0.32  Score=46.75  Aligned_cols=27  Identities=33%  Similarity=0.356  Sum_probs=21.1

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ....++...|-||+||||+|..++..+
T Consensus        24 ~~~~i~v~sgKGGvGKTTvA~~LA~~l   50 (349)
T 3ug7_A           24 DGTKYIMFGGKGGVGKTTMSAATGVYL   50 (349)
T ss_dssp             CSCEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCccHHHHHHHHHHHH
Confidence            345566667999999999999877654

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=89.77  E-value=0.13  Score=49.75  Aligned_cols=24  Identities=33%  Similarity=0.464  Sum_probs=20.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|+|..|.|||||++.+...+
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            479999999999999999876543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=89.76  E-value=0.18  Score=44.58  Aligned_cols=24  Identities=21%  Similarity=0.122  Sum_probs=19.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|.|+|.+|+|||||...+...
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            345779999999999999987654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=89.73  E-value=0.18  Score=48.75  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .+++|+|.+|+|||||...+..
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHC
T ss_pred             CEEEEECCCCccHHHHHHHHhc
Confidence            4789999999999999987654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=89.72  E-value=0.18  Score=47.53  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.2

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .....|+|+|.+|+|||||...+...
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            45789999999999999999887643

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=89.63  E-value=0.25  Score=47.00  Aligned_cols=25  Identities=44%  Similarity=0.402  Sum_probs=20.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++...|-||+||||+|..++..+
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~l   38 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWM   38 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Confidence            4566667899999999999877654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=89.58  E-value=0.22  Score=49.24  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=21.7

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .-.+++|+|+.|.|||||.+.+...+
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            44689999999999999999876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=89.51  E-value=0.22  Score=43.37  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=21.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-|+|+|.+|+|||||...+...
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhC
Confidence            3567889999999999999988654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=89.50  E-value=0.12  Score=44.52  Aligned_cols=25  Identities=24%  Similarity=0.133  Sum_probs=20.8

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..-|+|+|.+|+|||||...+....
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3467899999999999999877653

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=89.37  E-value=0.24  Score=45.01  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=20.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+|+|+|+.|+||||+|+.+...
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~   24 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999987654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=89.34  E-value=0.18  Score=49.91  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=20.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...-++|+|..|+|||||.+.++..
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCc
Confidence            3344999999999999999987754

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=89.34  E-value=0.26  Score=43.56  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..|.|-|.-|+||||+++.+.+.+
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L   26 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRL   26 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHH
Confidence            468899999999999999887765

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=89.33  E-value=0.18  Score=44.39  Aligned_cols=25  Identities=32%  Similarity=0.302  Sum_probs=20.8

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..--|+|+|.+|+|||||...+...
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcC
Confidence            3456889999999999999987653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=89.29  E-value=0.14  Score=45.20  Aligned_cols=25  Identities=16%  Similarity=0.157  Sum_probs=21.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|+|+|.+|+|||||...+...
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4567889999999999999987655

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=89.27  E-value=0.26  Score=47.43  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=22.4

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+++.+.|-||+||||+|..++..+
T Consensus        16 ~~~~i~~~~gkGGvGKTt~a~~lA~~l   42 (348)
T 3io3_A           16 DSLKWIFVGGKGGVGKTTTSSSVAVQL   42 (348)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence            346888899999999999999876554

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=89.26  E-value=0.17  Score=43.79  Aligned_cols=21  Identities=24%  Similarity=0.196  Sum_probs=18.8

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +.|+|.+|+||||+|.++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            679999999999999988754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=89.23  E-value=0.25  Score=41.22  Aligned_cols=22  Identities=27%  Similarity=0.228  Sum_probs=19.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .+.+|+|+.|.|||||..+++-
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999888653

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=89.21  E-value=0.28  Score=43.52  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=19.6

Q ss_pred             eEEEEecC-CCChhHHHHHHHHhHH
Q 037205          138 YALGIWGI-GGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~-gGiGKTtLA~~v~~~~  161 (439)
                      ++|.|.|. ||+||||+|..++..+
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~l   26 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            57888874 8999999999877654

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=89.19  E-value=0.25  Score=44.34  Aligned_cols=26  Identities=23%  Similarity=0.212  Sum_probs=20.9

Q ss_pred             CeeEEEEec-CCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWG-IGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G-~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|+|++ -||+||||+|..++..+
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~l   29 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFAL   29 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHH
Confidence            457888885 69999999999877654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=89.06  E-value=0.17  Score=50.73  Aligned_cols=26  Identities=23%  Similarity=0.194  Sum_probs=21.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .-.+++|+|..|.|||||++.++.-.
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            34579999999999999999877654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=88.99  E-value=0.24  Score=42.40  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=20.0

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      ...-|+|+|.+|+|||||...+..
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            445688999999999999988753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=88.95  E-value=0.23  Score=45.28  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=20.8

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|+|+|.+|+|||||...+...
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            3567899999999999999887643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=88.95  E-value=0.15  Score=48.81  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|+|..|.|||||++.+....
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999887654

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=88.86  E-value=0.2  Score=46.79  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=24.9

Q ss_pred             hHHHHHhhhccCCCCeeEEEEec---CCCChhHHHHHHHHhHH
Q 037205          122 RVEEIESLLSVESKDVYALGIWG---IGGIGKTTIARATFDKI  161 (439)
Q Consensus       122 ~~~~l~~~L~~~~~~~~vi~I~G---~gGiGKTtLA~~v~~~~  161 (439)
                      .+.++.+.+..   +.++|+|++   -||+||||+|..++..+
T Consensus        22 ~~~~~~r~~~~---~~~~i~v~~~s~KGGvGKTT~a~nLA~~l   61 (298)
T 2oze_A           22 ILEELRRILSN---KNEAIVILNNYFKGGVGKSKLSTMFAYLT   61 (298)
T ss_dssp             HHHHHHHHHHH---HCSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC---CCcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence            34555554442   235666665   89999999999877654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=88.78  E-value=0.23  Score=44.05  Aligned_cols=24  Identities=17%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .--|+|+|.+|+|||||...+...
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            456889999999999999987654

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=88.75  E-value=0.44  Score=46.56  Aligned_cols=28  Identities=21%  Similarity=0.239  Sum_probs=22.2

Q ss_pred             CCCeeEEEEe-cCCCChhHHHHHHHHhHH
Q 037205          134 SKDVYALGIW-GIGGIGKTTIARATFDKI  161 (439)
Q Consensus       134 ~~~~~vi~I~-G~gGiGKTtLA~~v~~~~  161 (439)
                      ....++|+|+ |-||+||||+|..++..+
T Consensus       105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~L  133 (398)
T 3ez2_A          105 YSEAYVIFISNLKGGVSKTVSTVSLAHAM  133 (398)
T ss_dssp             CCSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence            3457888887 689999999999876554

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=88.53  E-value=0.27  Score=45.56  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=20.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...|+++|.+|+|||||...+...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            356899999999999999998753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=88.47  E-value=0.26  Score=46.41  Aligned_cols=25  Identities=20%  Similarity=0.195  Sum_probs=21.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|+|+|.+|+|||||...+...
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3567999999999999999987654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=88.46  E-value=0.21  Score=51.08  Aligned_cols=23  Identities=48%  Similarity=0.673  Sum_probs=20.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+++|+|+.|+|||||++.++.-
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999988754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=88.44  E-value=0.23  Score=50.78  Aligned_cols=23  Identities=39%  Similarity=0.521  Sum_probs=20.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+++|+|+.|.|||||++.++.-
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999988754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=88.39  E-value=0.2  Score=49.47  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=18.9

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |+|+|.+|+|||||...++..
T Consensus        34 I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            599999999999999988754

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=88.38  E-value=0.24  Score=49.30  Aligned_cols=26  Identities=15%  Similarity=0.276  Sum_probs=22.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -..++|+|..|+|||||++.+.....
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccC
Confidence            35799999999999999998876643

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=88.29  E-value=0.28  Score=47.43  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.5

Q ss_pred             eeEEEEecCCCChhHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARAT  157 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v  157 (439)
                      ..-|.|.|.||.||||+++++
T Consensus        33 ~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           33 LVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             ccEEEEECCCCCcHHHHHHHH
Confidence            456789999999999999986

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=88.29  E-value=0.39  Score=44.57  Aligned_cols=25  Identities=16%  Similarity=0.311  Sum_probs=21.3

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ....|+|+|.+|+|||||...+...
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence            4668999999999999999887643

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=88.28  E-value=0.25  Score=49.69  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+++|+|+.|.|||||.+.++.-
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcC
Confidence            78999999999999999976643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=88.28  E-value=0.23  Score=48.15  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=21.5

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ++.+.|+|+|.+|+|||||...+....
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCC
Confidence            356789999999999999999887653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=88.25  E-value=0.32  Score=49.57  Aligned_cols=37  Identities=14%  Similarity=0.101  Sum_probs=26.1

Q ss_pred             HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+...|..+-..-.+++|.|.+|+|||||++.++...
T Consensus       269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3444443222234589999999999999999987553

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=88.23  E-value=0.36  Score=42.30  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=21.4

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|.|=|.-|+||||.++.+++.+..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~   26 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEK   26 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4678899999999999998887653

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=88.18  E-value=0.31  Score=44.62  Aligned_cols=27  Identities=30%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             CCeeEEEEe-cCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIW-GIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~-G~gGiGKTtLA~~v~~~~  161 (439)
                      ...++|+|+ |-||+||||+|..++..+
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~l   52 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLL   52 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHH
Confidence            356788886 579999999999876543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=88.17  E-value=0.24  Score=45.38  Aligned_cols=23  Identities=26%  Similarity=0.154  Sum_probs=20.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +.|+++|.+|+|||||...+...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            46899999999999999988654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=88.09  E-value=0.25  Score=50.52  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|..|.|||||++.++.
T Consensus        47 Ge~~~LvG~NGaGKSTLlk~l~G   69 (538)
T 1yqt_A           47 GMVVGIVGPNGTGKSTAVKILAG   69 (538)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	439
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	6e-28

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  109 bits (274), Expect = 6e-28
 Identities = 37/254 (14%), Positives = 74/254 (29%), Gaps = 31/254 (12%)

Query: 116 LVGVESRVEEIESLLS-VESKDVYALGIWGIGGIGKTTIARATF---------------- 158
               E  V+ +   L  +   D + L + G  G GK+ IA                    
Sbjct: 22  CYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVW 81

Query: 159 ------------DKISRYLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF 206
                       D  +  LL  K   +LL   +      +  +R+    ++     +  F
Sbjct: 82  LKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVF 141

Query: 207 SQLESLMGSLDWLTPVSRIILTTRNKQVLRN-WGVSKIYEMEALEYHHALELFSRHAFKR 265
             +              R ++TTR+ ++        +  E+ +LE     +    +    
Sbjct: 142 DDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPM 201

Query: 266 NHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILYPSILEVLK 325
              +   E + +  ++   G P  L +       +  E      NKL+      +  +  
Sbjct: 202 PVGE-KEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITP 260

Query: 326 ISYDGLDNKEKNIF 339
            SY  L    +   
Sbjct: 261 YSYKSLAMALQRCV 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	439
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	100.0
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.29
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.91
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.84
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.81
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.81
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.8
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.79
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.74
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.68
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.65
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.54
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.52
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.48
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.48
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.47
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.44
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.41
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.28
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.27
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.27
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.19
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.16
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.25
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.18
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.13
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.13
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.11
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.09
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.08
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.06
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.04
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.04
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.95
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.85
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.82
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.82
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.81
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.78
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.78
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.74
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.74
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.74
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.74
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.63
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.61
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.59
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.57
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.51
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.51
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.49
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.37
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.31
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.21
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.19
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.15
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.06
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.04
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.01
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.0
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.99
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.94
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.9
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.83
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.72
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.72
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.7
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.67
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.63
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.62
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.59
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.59
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.56
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.55
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.55
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.47
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.43
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.41
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.25
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.19
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.12
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.1
d1okkd2	207	GTPase domain of the signal recognition particle r	95.07
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.07
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.96
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.89
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.82
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.77
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.7
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.52
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.49
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.44
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.42
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.37
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	94.35
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.28
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.28
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.2
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.14
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.11
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.08
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.96
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.93
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.92
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.87
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.85
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.83
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.76
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.76
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.75
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.75
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.71
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	93.59
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.57
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	93.53
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.5
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.41
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.39
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.36
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.36
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.34
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.32
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.28
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.25
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.18
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.13
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.07
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.06
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.06
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	93.02
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.01
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.96
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.92
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	92.92
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.88
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.83
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.83
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.82
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.79
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.79
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.78
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.76
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.76
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.72
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.72
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.71
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.7
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.65
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.64
d1nrjb_	209	Signal recognition particle receptor beta-subunit	92.62
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.61
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.59
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.56
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.55
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.48
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.48
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.44
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.43
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	92.35
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.31
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.31
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.3
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.3
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.29
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.29
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.2
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.15
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.05
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	92.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	91.99
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	91.98
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.98
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.9
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	91.84
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.84
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	91.82
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	91.81
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.81
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.69
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	91.64
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.57
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	91.54
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.54
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	91.53
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	91.52
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.51
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.44
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.44
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.38
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.36
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	91.35
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	91.34
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.3
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	91.25
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.19
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	91.15
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.12
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	91.05
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	91.04
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.04
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	90.94
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	90.94
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.93
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	90.84
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.74
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.69
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	90.5
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.48
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	90.42
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	90.34
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	89.76
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	89.6
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	89.43
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.16
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	89.01
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	88.41
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	88.38
d1tuea_	205	Replication protein E1 helicase domain {Human papi	88.21
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	86.75
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	86.56
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.51
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	86.39
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.29
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	86.05
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	85.78
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	84.5
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	83.87
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	83.58
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	83.4
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	82.83
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	82.82
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	82.53
d1xpua3	289	Transcription termination factor Rho, ATPase domai	82.46
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	82.06
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	81.97
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	81.14
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	81.1
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	81.02
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	80.33
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	80.28

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.1e-39  Score=306.94  Aligned_cols=223  Identities=17%  Similarity=0.133  Sum_probs=181.8

Q ss_pred             CCCcccccchHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH----------HH----------H---HH
Q 037205          113 KSQLVGVESRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR----------YL----------L---AT  168 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------f~----------~---~~  168 (439)
                      ...++||+.++++|.++|.. .+.+.++|+|+|||||||||||+++|++...          |+          +   ..
T Consensus        19 ~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~   98 (277)
T d2a5yb3          19 QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTD   98 (277)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred             CCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHH
Confidence            45588999999999999865 4556889999999999999999999987432          43          1   22


Q ss_pred             HHHHHHhcCCC-CC----C------cHHHHHHHhccCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHh
Q 037205          169 KLISNLLKDEN-AI----P------GIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRN  237 (439)
Q Consensus       169 ~ll~~l~~~~~-~~----~------~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~  237 (439)
                      .++..+..... ..    .      ....+...+.++++|+||||||+.++++.+..      .||+||||||++.++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~------~~srilvTTR~~~v~~~  172 (277)
T d2a5yb3          99 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVEISNA  172 (277)
T ss_dssp             HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH------TTCEEEEEESBGGGGGG
T ss_pred             HHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhcc------cCceEEEEeehHHHHHh
Confidence            22222222211 11    1      23346677889999999999999999987643      58999999999999988


Q ss_pred             cCCC-eEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHHHhcCC
Q 037205          238 WGVS-KIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRIL  316 (439)
Q Consensus       238 ~~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~~  316 (439)
                      +... ..|+|++|+.+||++||++++|....+ +..++++++|+++|+|+||||+++|+.|+.++.+.|....+.|....
T Consensus       173 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~  251 (277)
T d2a5yb3         173 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVG-EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRG  251 (277)
T ss_dssp             CCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHC
T ss_pred             cCCCCceEECCCCCHHHHHHHHHHHhCCccCc-hhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCc
Confidence            7544 689999999999999999999876544 35678899999999999999999999999999999999999998888


Q ss_pred             CccHHHHHHHhhcCCCHHhHHHHhcc
Q 037205          317 YPSILEVLKISYDGLDNKEKNIFLGV  342 (439)
Q Consensus       317 ~~~i~~~l~~Sy~~L~~~~k~~fl~l  342 (439)
                      ...+..++.+||+.||++.|.||.++
T Consensus       252 ~~~v~~il~~sY~~L~~~lk~c~~~l  277 (277)
T d2a5yb3         252 LVGVECITPYSYKSLAMALQRCVEVL  277 (277)
T ss_dssp             SSTTCCCSSSSSSSHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHhC
Confidence            88899999999999999999999764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.29  E-value=9e-12  Score=114.80  Aligned_cols=176  Identities=17%  Similarity=0.234  Sum_probs=105.6

Q ss_pred             CCCCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH---------------HHHHH
Q 037205          109 PRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YL---------------LATKL  170 (439)
Q Consensus       109 p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~---------------~~~~l  170 (439)
                      |..+...|+||+.++++|.+..      .+.|.|+|++|+|||+|++++.+....   |+               +...+
T Consensus         7 p~~~~~~f~GR~~el~~l~~~~------~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (283)
T d2fnaa2           7 PKDNRKDFFDREKEIEKLKGLR------APITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLEL   80 (283)
T ss_dssp             CCCSGGGSCCCHHHHHHHHHTC------SSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred             CCCChhhCCChHHHHHHHHhcc------CCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccccccccccHHHHHHHH
Confidence            3356789999999999998742      367889999999999999999876532   00               11111


Q ss_pred             HHH--------------HhcCCC---------------CCC-cHHHHHH--HhccCCceEEecCCCCHH---------HH
Q 037205          171 ISN--------------LLKDEN---------------AIP-GIDLNFR--RLSRMKVLIFFYDVTCFS---------QL  209 (439)
Q Consensus       171 l~~--------------l~~~~~---------------~~~-~~~~l~~--~l~~~~~LlVlDdv~~~~---------~~  209 (439)
                      ...              +.....               ... ..+.+..  ...++++++|+|++....         .+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~~~~~~~~~~~l  160 (283)
T d2fnaa2          81 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL  160 (283)
T ss_dssp             HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred             HHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhcccchHHHHHHH
Confidence            111              000000               000 1222222  234688999999884321         12


Q ss_pred             HHHhcCCCCCCCCcEEEEEeCchHHHHhc------------CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHH
Q 037205          210 ESLMGSLDWLTPVSRIILTTRNKQVLRNW------------GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSS  277 (439)
Q Consensus       210 ~~l~~~~~~~~~gs~IiiTTR~~~v~~~~------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~  277 (439)
                      ..+...    ......+++++........            .....+.|++++.+++.+++.+..-......+    .+.
T Consensus       161 ~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~~----~~~  232 (283)
T d2fnaa2         161 AYAYDN----LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK----DYE  232 (283)
T ss_dssp             HHHHHH----CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC----CHH
T ss_pred             HHHHHh----hhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcCCCHH----HHH
Confidence            222111    1234445555443332211            12356889999999999999876532222221    156


Q ss_pred             HHHHHhCCCcHHHHHHHHhhc
Q 037205          278 NVMKYVQGVPLALKVLGCFLY  298 (439)
Q Consensus       278 ~i~~~~~GlPLal~~~g~~L~  298 (439)
                      ++++.++|+|..|..++..+.
T Consensus       233 ~i~~~~~G~P~~L~~~~~~~~  253 (283)
T d2fnaa2         233 VVYEKIGGIPGWLTYFGFIYL  253 (283)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHH
Confidence            899999999999999987664

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=8.3e-09  Score=92.57  Aligned_cols=172  Identities=12%  Similarity=0.133  Sum_probs=104.2

Q ss_pred             CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHH------------------HHHHHHHH
Q 037205          112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYL------------------LATKLISN  173 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~------------------~~~~ll~~  173 (439)
                      .-.+++|.+..++.|..++..  ...+.+.++|++|+||||+|+.+++.+....                  ........
T Consensus        10 ~~~diig~~~~~~~l~~~i~~--~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (237)
T d1sxjd2          10 NLDEVTAQDHAVTVLKKTLKS--ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKN   87 (237)
T ss_dssp             STTTCCSCCTTHHHHHHHTTC--TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHH
T ss_pred             CHHHccCcHHHHHHHHHHHHc--CCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHHH
Confidence            346799999999999999974  3345588999999999999999998864300                  11111111


Q ss_pred             HhcCCCCCCcHHHHHHHhccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCCC
Q 037205          174 LLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEAL  249 (439)
Q Consensus       174 l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L  249 (439)
                      .............+......+.-++|+|+++..  .....+...........++|+||.+. .+.... .....+++.++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~  167 (237)
T d1sxjd2          88 FARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKAL  167 (237)
T ss_dssp             HHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCC
T ss_pred             HhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccchhhhhccccc
Confidence            111111111222223333344457899998643  23333332222233556677666543 221111 12367899999


Q ss_pred             CHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          250 EYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       250 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                      +.++...++.+.+.......  ..+..+.|++.++|-+
T Consensus       168 ~~~~~~~~L~~i~~~e~i~i--~~~~l~~ia~~s~gd~  203 (237)
T d1sxjd2         168 DASNAIDRLRFISEQENVKC--DDGVLERILDISAGDL  203 (237)
T ss_dssp             CHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCH
T ss_pred             cccccchhhhhhhhhhcCcC--CHHHHHHHHHHcCCCH
Confidence            99999999988775544322  2567888999998864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=1.2e-08  Score=91.00  Aligned_cols=167  Identities=13%  Similarity=0.130  Sum_probs=103.5

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhc-CCCCCCcHHHHHH--
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK-DENAIPGIDLNFR--  189 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~-~~~~~~~~~~l~~--  189 (439)
                      ..++||.+..++.|.+++..+  ..+.+.++|++|+||||+|+.+++.+...    ........ ...+.........  
T Consensus        13 ~~divg~~~~~~~L~~~i~~~--~~~~lLl~Gp~G~GKttl~~~la~~l~~~----~~~~~~~e~~~~~~~~~~~~~~~~   86 (227)
T d1sxjc2          13 LDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGK----NYSNMVLELNASDDRGIDVVRNQI   86 (227)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTT----SHHHHEEEECTTSCCSHHHHHTHH
T ss_pred             HHHccCcHHHHHHHHHHHHcC--CCCeEEEECCCCCChhHHHHHHHHHhhcC----CCcceeEEecccccCCeeeeecch
Confidence            367999999999999998743  34457799999999999999998875420    00000010 0011111111111  


Q ss_pred             --H------hccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchHH-HHh-cCCCeEEEcCCCCHHHHHHH
Q 037205          190 --R------LSRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQV-LRN-WGVSKIYEMEALEYHHALEL  257 (439)
Q Consensus       190 --~------l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~-~~~~~~~~l~~L~~~ea~~L  257 (439)
                        .      ..++..++|+|+++..  .....|...+......++++++|.+..- ... ......+++.+++.++-...
T Consensus        87 ~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~i~~~  166 (227)
T d1sxjc2          87 KDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERR  166 (227)
T ss_dssp             HHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred             hhccccccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhhhccccccccccccc
Confidence              0      1123458889999643  3334444433334567788887775432 221 23457889999999999998


Q ss_pred             HHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205          258 FSRHAFKRNHPDVGYEKLSSNVMKYVQGVP  287 (439)
Q Consensus       258 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlP  287 (439)
                      +.+.+.......  ..+....|++.++|-.
T Consensus       167 l~~I~~~e~i~i--~~~~l~~i~~~s~Gd~  194 (227)
T d1sxjc2         167 IANVLVHEKLKL--SPNAEKALIELSNGDM  194 (227)
T ss_dssp             HHHHHHTTTCCB--CHHHHHHHHHHHTTCH
T ss_pred             cccccccccccC--CHHHHHHHHHHcCCcH
Confidence            888775443222  2566788999999874

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.81  E-value=1.7e-07  Score=85.61  Aligned_cols=176  Identities=13%  Similarity=0.107  Sum_probs=95.8

Q ss_pred             CCCCCCCCcccccchHHHHHhhhcc----C---CCCeeEEEEecCCCChhHHHHHHHHhHHhHHH---------------
Q 037205          108 RPRDNKSQLVGVESRVEEIESLLSV----E---SKDVYALGIWGIGGIGKTTIARATFDKISRYL---------------  165 (439)
Q Consensus       108 ~p~~~~~~~vGr~~~~~~l~~~L~~----~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~---------------  165 (439)
                      +|...+..++||+.++++|.+.+..    +   ++...++.|+|++|+|||++++.+++.+....               
T Consensus        10 ~~~~~P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~   89 (287)
T d1w5sa2          10 DENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF   89 (287)
T ss_dssp             STTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred             CCccCCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccc
Confidence            3446678899999999999887631    1   22234567789999999999999999875410               


Q ss_pred             -------HHHHHHHHHhcCCC--CCC---cHHHHHHHh--ccCCceEEecCCCCHH--------HHHH---Hhc---CCC
Q 037205          166 -------LATKLISNLLKDEN--AIP---GIDLNFRRL--SRMKVLIFFYDVTCFS--------QLES---LMG---SLD  217 (439)
Q Consensus       166 -------~~~~ll~~l~~~~~--~~~---~~~~l~~~l--~~~~~LlVlDdv~~~~--------~~~~---l~~---~~~  217 (439)
                             ..............  ...   ....+....  .+...++++|.++...        ....   +..   ...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~  169 (287)
T d1w5sa2          90 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD  169 (287)
T ss_dssp             GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred             cccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchhh
Confidence                   22223333332222  111   223333333  2356677788774321        1111   111   111


Q ss_pred             CCCCCcEEEEEeCchHHH-------H-hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHh
Q 037205          218 WLTPVSRIILTTRNKQVL-------R-NWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYV  283 (439)
Q Consensus       218 ~~~~gs~IiiTTR~~~v~-------~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~  283 (439)
                      ....-..|++++......       . .......+.+++++.++..+++...+-....+..-..+..+.|++.+
T Consensus       170 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~  243 (287)
T d1w5sa2         170 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY  243 (287)
T ss_dssp             SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH
T ss_pred             cccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHH
Confidence            112223344454433211       1 11235678999999999999998776221111111245566666655

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=1.5e-08  Score=90.44  Aligned_cols=170  Identities=12%  Similarity=0.164  Sum_probs=103.3

Q ss_pred             CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhc-CCCCCCcHHH----
Q 037205          112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK-DENAIPGIDL----  186 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~-~~~~~~~~~~----  186 (439)
                      ...++||-+..++.|.+++..+  ..+.+.++|++|+||||+|+.+++.+..    ...-..... ...+......    
T Consensus        13 ~~~d~ig~~~~~~~L~~~~~~~--~~~~~ll~Gp~G~GKTt~a~~la~~l~~----~~~~~~~~~~n~~~~~~~~~i~~~   86 (224)
T d1sxjb2          13 VLSDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLG----RSYADGVLELNASDDRGIDVVRNQ   86 (224)
T ss_dssp             SGGGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHG----GGHHHHEEEECTTSCCSHHHHHTH
T ss_pred             CHHHhcCCHHHHHHHHHHHHcC--CCCeEEEECCCCCCchhhHHHHHHHHhc----cccccccccccccccCCceehhhH
Confidence            3477999999999999999743  3445779999999999999998877542    000000100 1111111111    


Q ss_pred             HHHHh-------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHh-cCCCeEEEcCCCCHHHHH
Q 037205          187 NFRRL-------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRN-WGVSKIYEMEALEYHHAL  255 (439)
Q Consensus       187 l~~~l-------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~  255 (439)
                      +....       ..+.-++|+|+++..  .....|..........+++++||.+. .+... ......+++++++.++-.
T Consensus        87 ~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~~~~i~  166 (224)
T d1sxjb2          87 IKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVL  166 (224)
T ss_dssp             HHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred             HHHHHHhhccCCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHhhhcccchhhhH
Confidence            11111       124568889999643  22233332222233456676666644 22222 234578999999999999


Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          256 ELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       256 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      ..+.+.+.......  ..+....|++.|+|.+..
T Consensus       167 ~~l~~i~~~e~~~i--~~~~l~~I~~~s~Gd~R~  198 (224)
T d1sxjb2         167 KRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQ  198 (224)
T ss_dssp             HHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhcccCC--CHHHHHHHHHHcCCcHHH
Confidence            99988775433222  246688999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=4.1e-08  Score=88.42  Aligned_cols=178  Identities=15%  Similarity=0.140  Sum_probs=110.3

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--H-------H--HHHHHHHHHh----c-
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--Y-------L--LATKLISNLL----K-  176 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f-------~--~~~~ll~~l~----~-  176 (439)
                      -.+++|.+..++.|..++..+. -...+.|+|++|+||||+|+.+++.+..  +       +  ....+...-.    . 
T Consensus        11 ~~dlig~~~~~~~L~~~i~~~~-~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   89 (239)
T d1njfa_          11 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI   89 (239)
T ss_dssp             GGGSCSCHHHHHHHHHHHHTTC-CCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTTEEEE
T ss_pred             HHHccChHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcCCCCeEEEe
Confidence            3689999999999999987432 2446789999999999999998876532  0       0  1111111100    0 


Q ss_pred             CCCCCCcHHHHHHHhc--------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchHH-HHhc-CCCeEE
Q 037205          177 DENAIPGIDLNFRRLS--------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQV-LRNW-GVSKIY  244 (439)
Q Consensus       177 ~~~~~~~~~~l~~~l~--------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~-~~~~~~  244 (439)
                      ........+.+++.+.        ++..++|||+++..  +....|+..+.....++++|++|.+..- .... .....+
T Consensus        90 ~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~~i  169 (239)
T d1njfa_          90 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF  169 (239)
T ss_dssp             ETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             cchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhhccc
Confidence            0001113444444433        34568899999754  3334455444434567788877765432 2221 345788


Q ss_pred             EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHH
Q 037205          245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVL  293 (439)
Q Consensus       245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~  293 (439)
                      .+.+++.++..+.+...+-......  .++.+..+++.++|.+- |+..+
T Consensus       170 ~~~~~~~~~i~~~l~~i~~~e~~~~--~~~~l~~i~~~s~Gd~R~ain~l  217 (239)
T d1njfa_         170 HLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLT  217 (239)
T ss_dssp             ECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             ccccCcHHHhhhHHHHHHhhhccCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence            9999999999888877764333222  25668889999999885 44443

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.79  E-value=3.5e-08  Score=89.86  Aligned_cols=156  Identities=15%  Similarity=0.182  Sum_probs=91.1

Q ss_pred             cCCCCCCCCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH------------
Q 037205          107 FRPRDNKSQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL------------  165 (439)
Q Consensus       107 ~~p~~~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------------  165 (439)
                      ++|.+.+..++||+.++++|.++|..    .....+.+.|+|++|+||||+|+.+++.+..     ++            
T Consensus         9 l~~~y~p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~   88 (276)
T d1fnna2           9 FSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA   88 (276)
T ss_dssp             GSTTCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhh
Confidence            34556677899999999999998863    2344678999999999999999999988753     11            


Q ss_pred             HHHHHHHHHhcCCC-CCC----cHHHHHHHhc--cCCceEEecCCCCHHH-----HHHHhcCCCCC-CCCcEEEEEeCch
Q 037205          166 LATKLISNLLKDEN-AIP----GIDLNFRRLS--RMKVLIFFYDVTCFSQ-----LESLMGSLDWL-TPVSRIILTTRNK  232 (439)
Q Consensus       166 ~~~~ll~~l~~~~~-~~~----~~~~l~~~l~--~~~~LlVlDdv~~~~~-----~~~l~~~~~~~-~~gs~IiiTTR~~  232 (439)
                      ....+......... ...    ....+...+.  ....++++|++++...     ...+....... .....+|.++...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  168 (276)
T d1fnna2          89 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND  168 (276)
T ss_dssp             HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred             hhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCch
Confidence            22333333322222 111    2223333332  2456666777654221     22222111111 2223455555544


Q ss_pred             HHHHhc-------CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205          233 QVLRNW-------GVSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       233 ~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                      ......       .....+.+++++.++..+++.+++
T Consensus       169 ~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~  205 (276)
T d1fnna2         169 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA  205 (276)
T ss_dssp             HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred             hhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHH
Confidence            332221       123567899999999999988765

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=2e-08  Score=90.87  Aligned_cols=175  Identities=13%  Similarity=0.112  Sum_probs=98.4

Q ss_pred             CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------HHHHHHHHHHHhc--CC
Q 037205          113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------------YLLATKLISNLLK--DE  178 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~~~~~ll~~l~~--~~  178 (439)
                      ..+++|.+...+.|..++.... ...-+.|+|++|+||||+|+.+++.+..            +.........+..  ..
T Consensus        10 ~~diig~~~~~~~L~~~~~~~~-~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (252)
T d1sxje2          10 LNALSHNEELTNFLKSLSDQPR-DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP   88 (252)
T ss_dssp             GGGCCSCHHHHHHHHTTTTCTT-CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred             HHHccCcHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchhhhhhccCC
Confidence            4679999999999988876432 3445779999999999999999987521            1101000000100  00


Q ss_pred             -------C--CCCc----HHHHH--------------HHhccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe
Q 037205          179 -------N--AIPG----IDLNF--------------RRLSRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT  229 (439)
Q Consensus       179 -------~--~~~~----~~~l~--------------~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT  229 (439)
                             .  ....    ...+.              ....++.-++|||+++..  +....+...+......+++|+||
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~t  168 (252)
T d1sxje2          89 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVC  168 (252)
T ss_dssp             SEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEE
T ss_pred             ccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhhhcccccccccccceeee
Confidence                   0  0000    01111              111233458889999753  23333333333334567777777


Q ss_pred             CchH-HHHh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          230 RNKQ-VLRN-WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       230 R~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      .+.. +... ......+++.+++.++..+.+...+-..... ...++..+.|+..+.|.+-.
T Consensus       169 n~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~-~~~~~~l~~i~~~s~Gd~R~  229 (252)
T d1sxje2         169 DSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ-LETKDILKRIAQASNGNLRV  229 (252)
T ss_dssp             SCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-ECCSHHHHHHHHHHTTCHHH
T ss_pred             ccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCC-CCcHHHHHHHHHHcCCcHHH
Confidence            6543 1111 1223678999999999999887665332211 11245678899999988653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.68  E-value=6.6e-08  Score=86.39  Aligned_cols=167  Identities=16%  Similarity=0.144  Sum_probs=100.9

Q ss_pred             CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhc-CCCCC---C-cH
Q 037205          112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLK-DENAI---P-GI  184 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~-~~~~~---~-~~  184 (439)
                      ...+++|-+..++.|..++..+  ..+.+.|+|++|+||||+|+.+++.+..  +-      ..... .....   . ..
T Consensus        22 ~~~diig~~~~~~~l~~~i~~~--~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~------~~~~e~n~s~~~~~~~~~   93 (231)
T d1iqpa2          22 RLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWR------HNFLELNASDERGINVIR   93 (231)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHH------HHEEEEETTCHHHHHTTH
T ss_pred             CHHHccCcHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHHhcccC------CCeeEEecCcccchhHHH
Confidence            3478999999999999999743  4556889999999999999998876532  00      00000 00000   0 11


Q ss_pred             HHHHHH------hccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCCCCHHHH
Q 037205          185 DLNFRR------LSRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYHHA  254 (439)
Q Consensus       185 ~~l~~~------l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea  254 (439)
                      ......      ...++.++++|+++.  ......|...+........+|.||... .+.... .....+.+.+.+.++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~i~~~~~~~~~~  173 (231)
T d1iqpa2          94 EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI  173 (231)
T ss_dssp             HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHH
T ss_pred             HHHHHHHhhhhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccccccccccchhhH
Confidence            111111      123567888999853  233344433332223345556555433 232221 2346789999999999


Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH
Q 037205          255 LELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL  288 (439)
Q Consensus       255 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL  288 (439)
                      ...+.+.+......  -..+..+.|++.++|-.-
T Consensus       174 ~~~l~~~~~~e~i~--i~~~~l~~I~~~~~gdiR  205 (231)
T d1iqpa2         174 AKRLRYIAENEGLE--LTEEGLQAILYIAEGDMR  205 (231)
T ss_dssp             HHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHH
Confidence            99888877544322  125667889999988654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=3.4e-08  Score=89.98  Aligned_cols=142  Identities=15%  Similarity=0.173  Sum_probs=89.8

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHH-------------hc-CCC
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNL-------------LK-DEN  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l-------------~~-~~~  179 (439)
                      +.++||+.+++++...|....  -.-+.++|.+|+|||+|+..++.++..    .+.-..+             .. ...
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~--k~n~lLVG~~GvGKTalv~~la~ri~~----~~vp~~l~~~~i~~l~~~~liag~~~   91 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQ----GDVPEVMADCTIYSLDIGSLLAGTKY   91 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHH----TCSCGGGTTCEEEECCCC---CCCCC
T ss_pred             CcccChHHHHHHHHHHHhcCc--cCCcEEECCCCCcHHHHHHHHHHHHHh----CCcccccccceeEEeeechHhccCcc
Confidence            458999999999999997432  345669999999999999999888653    0000000             00 000


Q ss_pred             CCCc---HHHHHHHh-ccCCceEEecCCCCH----------HHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcC------
Q 037205          180 AIPG---IDLNFRRL-SRMKVLIFFYDVTCF----------SQLESLMGSLDWLTPVSRIILTTRNKQVLRNWG------  239 (439)
Q Consensus       180 ~~~~---~~~l~~~l-~~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~------  239 (439)
                      .-..   ...+...+ ...+++|++|++...          .++..++.+... ...-++|.||..+.......      
T Consensus        92 ~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~-rg~i~vIgatT~eey~~~~e~d~al~  170 (268)
T d1r6bx2          92 RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALA  170 (268)
T ss_dssp             SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSG
T ss_pred             chhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh-CCCCeEEEeCCHHHHHHHHhhcHHHH
Confidence            0001   22223333 456799999998432          234455544322 23467888888776644432      


Q ss_pred             -CCeEEEcCCCCHHHHHHHHHHhh
Q 037205          240 -VSKIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       240 -~~~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                       ....+.|.+++.+++..++...+
T Consensus       171 rrF~~I~V~Eps~e~t~~IL~~~~  194 (268)
T d1r6bx2         171 RRFQKIDITEPSIEETVQIINGLK  194 (268)
T ss_dssp             GGEEEEECCCCCHHHHHHHHHHHH
T ss_pred             hhhcccccCCCCHHHHHHHHHHhh
Confidence             24688999999999999987644

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=1.1e-07  Score=86.02  Aligned_cols=174  Identities=16%  Similarity=0.146  Sum_probs=97.7

Q ss_pred             CCCcccccchHHHHHhhhcc---------------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH---------
Q 037205          113 KSQLVGVESRVEEIESLLSV---------------ESKDVYALGIWGIGGIGKTTIARATFDKISR---YL---------  165 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~---------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~---------  165 (439)
                      ..+++|.+..+++|.+++..               +....+.+.++|++|+||||+|+.+++....   ++         
T Consensus        13 ~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~~~~~~   92 (253)
T d1sxja2          13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKT   92 (253)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHH
T ss_pred             HHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhccccccchhhH
Confidence            47899999999999998742               1233578999999999999999999987653   00         


Q ss_pred             HHHHHHHHHhcCCCCCC--cHHHHHHHhccCCceEEecCCCCHH-----HHHHHhcCCCCCCCCcEEEEEeCc--hHHHH
Q 037205          166 LATKLISNLLKDENAIP--GIDLNFRRLSRMKVLIFFYDVTCFS-----QLESLMGSLDWLTPVSRIILTTRN--KQVLR  236 (439)
Q Consensus       166 ~~~~ll~~l~~~~~~~~--~~~~l~~~l~~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IiiTTR~--~~v~~  236 (439)
                      .................  ...........+..++++|+++...     .+..+.....  .....+++|+.+  .....
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~--~~~~~ii~i~~~~~~~~~~  170 (253)
T d1sxja2          93 LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNERNLPKMR  170 (253)
T ss_dssp             HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESCTTSSTTG
T ss_pred             HHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhhhhHHHhhhhc--ccccccccccccccccccc
Confidence            11111111111111110  1111112233466788899885321     1222222111  122345544432  21222


Q ss_pred             h-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc-HHH
Q 037205          237 N-WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP-LAL  290 (439)
Q Consensus       237 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal  290 (439)
                      . ......+.+.+++.++-...+...+-.......  .+....|++.++|-. -|+
T Consensus       171 ~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~--~~~l~~i~~~s~GDiR~ai  224 (253)
T d1sxja2         171 PFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVI  224 (253)
T ss_dssp             GGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHH
T ss_pred             cccceeeeeeccccchhHHHHHHHHHHHHhCCCCC--HHHHHHHHHhCCCcHHHHH
Confidence            2 234578999999999999888776533222111  245778999999976 443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.52  E-value=4.1e-07  Score=82.04  Aligned_cols=172  Identities=15%  Similarity=0.211  Sum_probs=95.1

Q ss_pred             CCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          113 KSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      -.+++|.++..+.|.+.+..          +....+-|.++|++|+|||+||+.+++.... |+  -...+.+...+.  
T Consensus         8 ~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~--   85 (247)
T d1ixza_           8 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV--   85 (247)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTH--
T ss_pred             HHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccH--
Confidence            35788998877776654311          1223567899999999999999999987654 11  111111110000  


Q ss_pred             CCCcHHHHHH-HhccCCceEEecCCCCHH----------------HHHHHhcCCCCCC--CCcEEEEEeCchHHHHh-c-
Q 037205          180 AIPGIDLNFR-RLSRMKVLIFFYDVTCFS----------------QLESLMGSLDWLT--PVSRIILTTRNKQVLRN-W-  238 (439)
Q Consensus       180 ~~~~~~~l~~-~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~-~-  238 (439)
                      ....+..+.+ .-...+++|+|||++...                .+..|+..+....  .+.-||.||..+..... + 
T Consensus        86 ~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~  165 (247)
T d1ixza_          86 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALL  165 (247)
T ss_dssp             HHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGG
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHhHc
Confidence            0001122222 224578899999985210                1223332222111  22233447765543222 1 


Q ss_pred             ---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          239 ---GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       239 ---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                         .....++++.++.++-.++|..+.........   .....+++.+.|+.-+
T Consensus       166 R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~---~~~~~la~~t~g~s~~  216 (247)
T d1ixza_         166 RPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFVGA  216 (247)
T ss_dssp             STTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHH
T ss_pred             CCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccc---cCHHHHHHHCCCCCHH
Confidence               34578999999999999999887743322111   1145667777776443

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=1.6e-07  Score=85.49  Aligned_cols=173  Identities=14%  Similarity=0.148  Sum_probs=100.3

Q ss_pred             CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205          114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~  179 (439)
                      .+++|.+..+++|.+.+..           +-...+-+.++|++|+|||++|+++++.... ++  -...+    .....
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l----~~~~~   79 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI----MSKLA   79 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHH----TTSCT
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhh----ccccc
Confidence            3578999888888876421           1233567899999999999999999987654 11  00000    00000


Q ss_pred             CC--C-cHHHHHHHhccCCceEEecCCCCHH-------------HHHHHhcCC--CCCCCCcEEEEEeCchHHHHhc---
Q 037205          180 AI--P-GIDLNFRRLSRMKVLIFFYDVTCFS-------------QLESLMGSL--DWLTPVSRIILTTRNKQVLRNW---  238 (439)
Q Consensus       180 ~~--~-~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~--~~~~~gs~IiiTTR~~~v~~~~---  238 (439)
                      ..  . ....+...-...+.+|++||++...             ....+....  .....+.-||.||..+......   
T Consensus        80 g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r  159 (258)
T d1e32a2          80 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR  159 (258)
T ss_dssp             THHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTS
T ss_pred             ccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchhhhh
Confidence            00  0 1112223334678999999995420             111221111  1123344556688766443221   


Q ss_pred             --CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH-HHHH
Q 037205          239 --GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA-LKVL  293 (439)
Q Consensus       239 --~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~~  293 (439)
                        ..+..+.++..+.++-.++|..+.-+.. ...+.  ....+++.+.|+--| |..+
T Consensus       160 ~gRfd~~i~~~~P~~~~R~~il~~~l~~~~-~~~~~--~~~~la~~t~G~s~adl~~l  214 (258)
T d1e32a2         160 FGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDV--DLEQVANETHGHVGADLAAL  214 (258)
T ss_dssp             TTSSCEEEECCCCCHHHHHHHHHHTTTTSC-BCTTC--CHHHHHHHCTTCCHHHHHHH
T ss_pred             cccccceeECCCCCHHHHHHHhhhhccCcc-ccccc--chhhhhhcccCCCHHHHHHH
Confidence              3568899999999999999987763222 11111  256788899887544 4444

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=2e-06  Score=76.75  Aligned_cols=168  Identities=13%  Similarity=0.102  Sum_probs=98.7

Q ss_pred             CCCcccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHHH
Q 037205          113 KSQLVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLNF  188 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l~  188 (439)
                      -.++||.+..++.|..++..   .....+-+.++|++|+||||+|+.+++.+.. +.         .-..........+.
T Consensus         8 ~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~---------~~~~~~~~~~~~~~   78 (238)
T d1in4a2           8 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---------VTSGPVLVKQGDMA   78 (238)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---------EEETTTCCSHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCcc---------cccCcccccHHHHH
Confidence            36799999999999988753   2233566889999999999999998877542 10         00001111122222


Q ss_pred             HHh--ccCCceEEecCCCCHHH-----H-HHHhcCC--------------CCCCCCcEEEEEeCch-HHHH--hcCCCeE
Q 037205          189 RRL--SRMKVLIFFYDVTCFSQ-----L-ESLMGSL--------------DWLTPVSRIILTTRNK-QVLR--NWGVSKI  243 (439)
Q Consensus       189 ~~l--~~~~~LlVlDdv~~~~~-----~-~~l~~~~--------------~~~~~gs~IiiTTR~~-~v~~--~~~~~~~  243 (439)
                      ..+  ..++..+++|.++....     + ..+....              ....+...+|.+|.+. ....  .......
T Consensus        79 ~~~~~~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~r~~~~  158 (238)
T d1in4a2          79 AILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII  158 (238)
T ss_dssp             HHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE
T ss_pred             HHHHhhccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCccccccceeeeeEE
Confidence            222  34567778887754321     1 1111100              0011234555555543 3222  1234567


Q ss_pred             EEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205          244 YEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK  291 (439)
Q Consensus       244 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~  291 (439)
                      +.++..+.++...++...+......  ...+....+++.++|.+-.+.
T Consensus       159 ~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~l~~i~~~s~gd~R~ai  204 (238)
T d1in4a2         159 LELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAI  204 (238)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHH
T ss_pred             EEecCCCHHHHHHHHHHhhhhccch--hhHHHHHHHHHhCCCCHHHHH
Confidence            7899999999999998877444332  225668889999999876553

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.47  E-value=8.1e-07  Score=79.45  Aligned_cols=168  Identities=15%  Similarity=0.086  Sum_probs=96.6

Q ss_pred             CCCcccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHHH
Q 037205          113 KSQLVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLNF  188 (439)
Q Consensus       113 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l~  188 (439)
                      -+++||-+..+++|..++..   .....+-+.++|++|+||||+|+.+++.... |.         ..............
T Consensus         8 ~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~---------~~~~~~~~~~~~~~   78 (239)
T d1ixsb2           8 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR---------VTSGPAIEKPGDLA   78 (239)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEE---------EEETTTCCSHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeE---------eccCCccccchhhH
Confidence            36799999999998888753   2334667889999999999999998876532 00         00011111111111


Q ss_pred             H---HhccCCceEEecCCCCH--HHHHHHhcCC--------CC----------CCCCcEEEEE-eCchHH--HHhcCCCe
Q 037205          189 R---RLSRMKVLIFFYDVTCF--SQLESLMGSL--------DW----------LTPVSRIILT-TRNKQV--LRNWGVSK  242 (439)
Q Consensus       189 ~---~l~~~~~LlVlDdv~~~--~~~~~l~~~~--------~~----------~~~gs~IiiT-TR~~~v--~~~~~~~~  242 (439)
                      .   ...+.+.++++|+++..  ..-+.+....        ..          ..+...++.+ ++....  ........
T Consensus        79 ~~~~~~~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  158 (239)
T d1ixsb2          79 AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGI  158 (239)
T ss_dssp             HHHHTTCCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGGGCSE
T ss_pred             HHHHhhccCCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcccccchhhcccce
Confidence            1   12234456777888532  1111111100        00          0122334444 442221  11223457


Q ss_pred             EEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205          243 IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK  291 (439)
Q Consensus       243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~  291 (439)
                      .+.+...+.++..+++.+.+......  ...+....+++.+.|.+-...
T Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~~i~--~~~~~l~~ia~~s~gd~R~a~  205 (239)
T d1ixsb2         159 VEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAK  205 (239)
T ss_dssp             EEECCCCCHHHHHHHHHHHHGGGCCC--BCHHHHHHHHHHTTSSHHHHH
T ss_pred             eeEeeccChhhhhHHHHHHHHHhCCc--cchHHHHHHHHHcCCCHHHHH
Confidence            88899999999998888776443322  235678999999999876553

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.44  E-value=8e-07  Score=80.06  Aligned_cols=141  Identities=14%  Similarity=0.106  Sum_probs=76.6

Q ss_pred             CCcccccchHHHHHhhhcc--------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCC--CCCC
Q 037205          114 SQLVGVESRVEEIESLLSV--------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDE--NAIP  182 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~--~~~~  182 (439)
                      ..+||....++.+.+-...        .....+.|.++|++|+|||++|+.+++.... |+       .+....  ....
T Consensus         9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~-------~i~~~~~~~g~~   81 (246)
T d1d2na_           9 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI-------KICSPDKMIGFS   81 (246)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE-------EEECGGGCTTCC
T ss_pred             cCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhccccccc-------cccccccccccc
Confidence            4588888777666654321        2234677999999999999999999887542 11       000000  0000


Q ss_pred             ---cHHHH----HHHhccCCceEEecCCCC------------HHHHHHHhcCCCCC-CCCcE--EEEEeCchHHHHhc--
Q 037205          183 ---GIDLN----FRRLSRMKVLIFFYDVTC------------FSQLESLMGSLDWL-TPVSR--IILTTRNKQVLRNW--  238 (439)
Q Consensus       183 ---~~~~l----~~~l~~~~~LlVlDdv~~------------~~~~~~l~~~~~~~-~~gs~--IiiTTR~~~v~~~~--  238 (439)
                         ....+    ....+..+.+|+||+++.            ...+..+...+... ..+.+  ||.||..+..+...  
T Consensus        82 ~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~  161 (246)
T d1d2na_          82 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM  161 (246)
T ss_dssp             HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred             ccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhh
Confidence               11112    223345678999999842            11233443333222 23334  45588777665443  


Q ss_pred             --CCCeEEEcCCCCH-HHHHHHHHHh
Q 037205          239 --GVSKIYEMEALEY-HHALELFSRH  261 (439)
Q Consensus       239 --~~~~~~~l~~L~~-~ea~~Lf~~~  261 (439)
                        .....+.++.++. ++-++.+...
T Consensus       162 ~~rF~~~i~~P~~~~r~~il~~l~~~  187 (246)
T d1d2na_         162 LNAFSTTIHVPNIATGEQLLEALELL  187 (246)
T ss_dssp             TTTSSEEEECCCEEEHHHHHHHHHHH
T ss_pred             cCccceEEecCCchhHHHHHHHHHhc
Confidence              2345677876653 4445555443

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=1.7e-07  Score=80.74  Aligned_cols=137  Identities=12%  Similarity=0.125  Sum_probs=81.5

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------HH-HHHHHHHHHhcCCC-
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------------YL-LATKLISNLLKDEN-  179 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~-~~~~ll~~l~~~~~-  179 (439)
                      +..+||+.+++++...|....  -.-+.++|.+|+|||+++..++.++..            |. ....++.   +... 
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~--k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiA---g~~~r   96 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA---GAKYR   96 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT---TTCSH
T ss_pred             CCCcCcHHHHHHHHHHHhccC--CCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhc---cCCcc
Confidence            458999999999999998432  234679999999999999999888753            10 1111110   0000 


Q ss_pred             -CCC-cHHHHHHHh-c-cCCceEEecCCCCHH---------HH-HHHhcCCCCCCCCcEEEEEeCchHHHHhc-------
Q 037205          180 -AIP-GIDLNFRRL-S-RMKVLIFFYDVTCFS---------QL-ESLMGSLDWLTPVSRIILTTRNKQVLRNW-------  238 (439)
Q Consensus       180 -~~~-~~~~l~~~l-~-~~~~LlVlDdv~~~~---------~~-~~l~~~~~~~~~gs~IiiTTR~~~v~~~~-------  238 (439)
                       +.. ....+.+.+ . ..+++|++|++...-         +. +-|.+.+.  ...-++|.||..+......       
T Consensus        97 G~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~--rg~l~~IgatT~eey~~~~e~d~aL~  174 (195)
T d1jbka_          97 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALE  174 (195)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHh--CCCceEEecCCHHHHHHHHHcCHHHH
Confidence             000 112222222 2 347899999994321         11 22222221  1335788777766554432       


Q ss_pred             CCCeEEEcCCCCHHHHHHH
Q 037205          239 GVSKIYEMEALEYHHALEL  257 (439)
Q Consensus       239 ~~~~~~~l~~L~~~ea~~L  257 (439)
                      .....+.|.+++.+++..+
T Consensus       175 rrF~~I~V~Ep~~e~t~~I  193 (195)
T d1jbka_         175 RRFQKVFVAEPSVEDTIAI  193 (195)
T ss_dssp             TTEEEEECCCCCHHHHHTT
T ss_pred             hcCCEeecCCCCHHHHHHH
Confidence            2457889999999988754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=1.9e-07  Score=85.31  Aligned_cols=171  Identities=13%  Similarity=0.170  Sum_probs=98.4

Q ss_pred             CCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205          112 NKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD  177 (439)
Q Consensus       112 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~  177 (439)
                      --.+++|.+..+++|.+.+..           +-...+.|.++|++|.|||+||+.+++.... |+  ....+    ...
T Consensus         5 ~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l----~~~   80 (265)
T d1r7ra3           5 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL----LTM   80 (265)
T ss_dssp             SCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHH----HTS
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHh----hhc
Confidence            345688999888888775521           1223567889999999999999999988654 11  11111    111


Q ss_pred             CCCCC---cHHHHHHHhccCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHHHH
Q 037205          178 ENAIP---GIDLNFRRLSRMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQVLR  236 (439)
Q Consensus       178 ~~~~~---~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~  236 (439)
                      .....   ....+...-...+++|+|||++...                ....++..+...  .++--||.||..+....
T Consensus        81 ~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld  160 (265)
T d1r7ra3          81 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID  160 (265)
T ss_dssp             CTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTS
T ss_pred             cccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCC
Confidence            11100   1122223334678999999995210                124444444322  23345666777554321


Q ss_pred             h-c----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          237 N-W----GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       237 ~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      . +    .....++++.++.++-.++|..+. .......+  .....+++.+.|+..+
T Consensus       161 ~al~r~gRf~~~i~~~~p~~~~R~~il~~~l-~~~~~~~~--~~l~~la~~t~g~s~~  215 (265)
T d1r7ra3         161 PAILRPGRLDQLIYIPLPDEKSRVAILKANL-RKSPVAKD--VDLEFLAKMTNGFSGA  215 (265)
T ss_dssp             CGGGSSTTSEEEEECCCCCCHHHHHHHHHHT-TCC----C--CCCHHHHHHHCSSCCH
T ss_pred             HHHhCCCCccEEEEecchHHHHHHHHHHHHh-ccCCchhh--hhHHHHHhcCCCCCHH
Confidence            1 1    346789999999999999998765 32211111  1135677788887654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1e-05  Score=70.51  Aligned_cols=163  Identities=15%  Similarity=0.140  Sum_probs=98.1

Q ss_pred             cchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----H------HHHHHHHHHHhcC-------CCCC
Q 037205          120 ESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----Y------LLATKLISNLLKD-------ENAI  181 (439)
Q Consensus       120 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f------~~~~~ll~~l~~~-------~~~~  181 (439)
                      +...+++.+.+..+. -...+.++|++|+||||+|+.+++.+..     .      .....+.......       ....
T Consensus         8 ~~~~~~l~~~~~~~~-l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   86 (207)
T d1a5ta2           8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN   86 (207)
T ss_dssp             HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred             HHHHHHHHHHHHcCC-cCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhccc
Confidence            345566666665222 2445889999999999999998876521     0      0011111111000       0000


Q ss_pred             C-cHHH---HHHHhc-----cCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcCC
Q 037205          182 P-GIDL---NFRRLS-----RMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEA  248 (439)
Q Consensus       182 ~-~~~~---l~~~l~-----~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~  248 (439)
                      . ..+.   +.+.+.     +++-++|+|+++.  .+....|+..+.....++.+|+||++.. +.... .....+.+.+
T Consensus        87 ~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~~~~  166 (207)
T d1a5ta2          87 TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAP  166 (207)
T ss_dssp             SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred             ccccchhhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEEecCC
Confidence            0 2333   333332     3566899999974  3445566555555557888888777654 43332 3457899999


Q ss_pred             CCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205          249 LEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL  290 (439)
Q Consensus       249 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal  290 (439)
                      ++.++....+....    ..   .++.+..+++.++|.|-.+
T Consensus       167 ~~~~~~~~~L~~~~----~~---~~~~~~~i~~~s~Gs~r~a  201 (207)
T d1a5ta2         167 PPEQYAVTWLSREV----TM---SQDALLAALRLSAGSPGAA  201 (207)
T ss_dssp             CCHHHHHHHHHHHC----CC---CHHHHHHHHHHTTTCHHHH
T ss_pred             CCHHHHHHHHHHcC----CC---CHHHHHHHHHHcCCCHHHH
Confidence            99999998886543    11   2466888899999987654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.1e-06  Score=79.42  Aligned_cols=168  Identities=14%  Similarity=0.148  Sum_probs=94.7

Q ss_pred             CCcccccchHHHHHhhhc---c-------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCC
Q 037205          114 SQLVGVESRVEEIESLLS---V-------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENA  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~  180 (439)
                      .+++|.++..++|.+.+.   .       +....+.+.++|++|+|||++|+.+++.... ++  -..    .+......
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~----~l~~~~~g   87 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS----DFVEMFVG   87 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSC----SSTTSCCC
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhH----Hhhhcchh
Confidence            578898888877765432   1       1223567889999999999999999876542 10  000    00000000


Q ss_pred             CCcHHH----HHHHhccCCceEEecCCCCH-------------H---HHHHHhcCCCC--CCCCcEEEEEeCchHHHHh-
Q 037205          181 IPGIDL----NFRRLSRMKVLIFFYDVTCF-------------S---QLESLMGSLDW--LTPVSRIILTTRNKQVLRN-  237 (439)
Q Consensus       181 ~~~~~~----l~~~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~--~~~gs~IiiTTR~~~v~~~-  237 (439)
                       .....    +...-...+++|++||++..             .   .+..++..+..  ...+--||.||.++..... 
T Consensus        88 -~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~a  166 (256)
T d1lv7a_          88 -VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA  166 (256)
T ss_dssp             -CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGG
T ss_pred             -HHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCHh
Confidence             11222    22233457789999999421             0   12233322221  1233345557876544321 


Q ss_pred             c----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205          238 W----GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA  289 (439)
Q Consensus       238 ~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa  289 (439)
                      +    ..+..+.++.++.++-.++|..+.-+.....   ......+++.+.|+.-|
T Consensus       167 l~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~---~~~~~~la~~t~G~s~a  219 (256)
T d1lv7a_         167 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP---DIDAAIIARGTPGFSGA  219 (256)
T ss_dssp             GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHTCTTCCHH
T ss_pred             HcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCc---ccCHHHHHHhCCCCCHH
Confidence            1    3567899999999999999987763322111   11245677788887544

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.19  E-value=1.6e-05  Score=69.67  Aligned_cols=161  Identities=17%  Similarity=0.223  Sum_probs=87.1

Q ss_pred             CCcccccchH--HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HH----HHHHHHHHHhcCCCCC
Q 037205          114 SQLVGVESRV--EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YL----LATKLISNLLKDENAI  181 (439)
Q Consensus       114 ~~~vGr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~----~~~~ll~~l~~~~~~~  181 (439)
                      ..++|-..+.  ..+.++..........+.|||.+|+|||.|++++++....      |+    ....+...+...    
T Consensus        11 nF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   86 (213)
T d1l8qa2          11 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKG----   86 (213)
T ss_dssp             SCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHT----
T ss_pred             hccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHcc----
Confidence            3355764443  3344444433333445789999999999999999998765      11    222222222211    


Q ss_pred             CcHHHHHHHhccCCceEEecCCCCH---HHHHH-HhcCCCC-CCCCcEEEEEeCchH---------HHHhcCCCeEEEcC
Q 037205          182 PGIDLNFRRLSRMKVLIFFYDVTCF---SQLES-LMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEME  247 (439)
Q Consensus       182 ~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~  247 (439)
                       ....+.+.++ .--+|++||++..   ..|+. +...+.. ...|.+||+||+...         +...+.....++++
T Consensus        87 -~~~~~~~~~~-~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~  164 (213)
T d1l8qa2          87 -TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE  164 (213)
T ss_dssp             -CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC
T ss_pred             -chhhHHHHHh-hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEEC
Confidence             1222333333 3568888999632   22322 2221111 236778999998542         22233455677885


Q ss_pred             CCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHh
Q 037205          248 ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYV  283 (439)
Q Consensus       248 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~  283 (439)
                       ++.++-.+++.+.+-.....-+  .+.+.-+++.+
T Consensus       165 -p~d~~~~~iL~~~a~~rgl~l~--~~v~~yl~~~~  197 (213)
T d1l8qa2         165 -LDNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT  197 (213)
T ss_dssp             -CCHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC
T ss_pred             -CCcHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhc
Confidence             5777777777777743332221  34444444443

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.16  E-value=7.4e-07  Score=85.40  Aligned_cols=144  Identities=12%  Similarity=0.132  Sum_probs=79.7

Q ss_pred             CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------HH-HHHHHHHHHhcCCCC
Q 037205          114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------------YL-LATKLISNLLKDENA  180 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~-~~~~ll~~l~~~~~~  180 (439)
                      +.+|||+.+++++...|....  -.-+.++|.+|+|||+|+..++.++..            |. ....++....... .
T Consensus        22 d~~~gr~~ei~~~~~~L~r~~--k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g-~   98 (387)
T d1qvra2          22 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRG-E   98 (387)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------C
T ss_pred             CCCcCcHHHHHHHHHHHhcCC--CCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcch-h
Confidence            458999999999999997422  122467899999999999988877643            00 0000000000000 0


Q ss_pred             CC-cHHHHHHHh-cc-CCceEEecCCCCHHH---------H-HHHhcCCCCCCCCcEEEEEeCchHHHHhc------CCC
Q 037205          181 IP-GIDLNFRRL-SR-MKVLIFFYDVTCFSQ---------L-ESLMGSLDWLTPVSRIILTTRNKQVLRNW------GVS  241 (439)
Q Consensus       181 ~~-~~~~l~~~l-~~-~~~LlVlDdv~~~~~---------~-~~l~~~~~~~~~gs~IiiTTR~~~v~~~~------~~~  241 (439)
                      .. ....+...+ .. .+++|++|++...-.         . .-|.+.+.  ...-++|.||........-      ...
T Consensus        99 ~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~--rg~~~~I~~tT~~ey~~~e~d~al~rrF  176 (387)
T d1qvra2          99 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALERRF  176 (387)
T ss_dssp             HHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTCSCC
T ss_pred             HHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHh--CCCcceeeecCHHHHHHhcccHHHHHhc
Confidence            00 112222233 23 468999999964311         1 12222221  1234677777655543221      234


Q ss_pred             eEEEcCCCCHHHHHHHHHHhh
Q 037205          242 KIYEMEALEYHHALELFSRHA  262 (439)
Q Consensus       242 ~~~~l~~L~~~ea~~Lf~~~a  262 (439)
                      ..+.|.+++.+++..++....
T Consensus       177 ~~v~v~ep~~~~~~~il~~~~  197 (387)
T d1qvra2         177 QPVYVDEPTVEETISILRGLK  197 (387)
T ss_dssp             CCEEECCCCHHHHHHHHHHHH
T ss_pred             ccccCCCCcHHHHHHHHHHHH
Confidence            688999999999999987544

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.25  E-value=7.2e-05  Score=62.78  Aligned_cols=27  Identities=15%  Similarity=0.179  Sum_probs=24.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ++.|+|.|++|+||||||+.+.+.+..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~   33 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNT   33 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            578999999999999999999887654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=7.1e-05  Score=61.40  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +.|.|.|++|+||||+|+.++..+..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~   28 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNM   28 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            35788899999999999999988653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.13  E-value=0.00012  Score=61.00  Aligned_cols=28  Identities=25%  Similarity=0.283  Sum_probs=24.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .-.+|.|+|++|+||||+|+.++..+..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3468889999999999999999988753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00012  Score=60.48  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=23.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +++++|+|.+|+|||||+..+.+.+.
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            47899999999999999999887654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.00069  Score=58.03  Aligned_cols=124  Identities=12%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHH-HHHHHHHhcCCCCCCcHHH---HHHHhc-----
Q 037205          122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLA-TKLISNLLKDENAIPGIDL---NFRRLS-----  192 (439)
Q Consensus       122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~-~~ll~~l~~~~~~~~~~~~---l~~~l~-----  192 (439)
                      +++.+.+++.  ......+.++|.+|+||||+|..+.+....+... .. +..+......+ .++.   +.+.+.     
T Consensus         2 ~~~~l~~~i~--~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D-~~~i~~~~~~I-~Id~IR~i~~~~~~~~~~   77 (198)
T d2gnoa2           2 QLETLKRIIE--KSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENI-GIDDIRTIKDFLNYSPEL   77 (198)
T ss_dssp             HHHHHHHHHH--TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCB-CHHHHHHHHHHHTSCCSS
T ss_pred             HHHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCC-EEEEeCCcCCC-CHHHHHHHHHHHhhCccc
Confidence            4566666666  3357889999999999999999887654320000 00 00000000011 2333   333433     


Q ss_pred             cCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcCCC
Q 037205          193 RMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEAL  249 (439)
Q Consensus       193 ~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L  249 (439)
                      +++-++|+|+++.  .+...+|+..+....+++.+|++|.+.. +.... .....+.++..
T Consensus        78 ~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p  138 (198)
T d2gnoa2          78 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVP  138 (198)
T ss_dssp             SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred             CCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCCc
Confidence            3445888999964  4445666655544456777777666543 33332 23456777644

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.09  E-value=0.00013  Score=60.46  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=22.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ++|.|.|++|+||||+|+.+...+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~   28 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDN   28 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            57999999999999999999877543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.08  E-value=0.00014  Score=59.08  Aligned_cols=25  Identities=32%  Similarity=0.271  Sum_probs=21.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|.|+|++|+||||||+++.....
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~   27 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNP   27 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHST
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC
Confidence            4788999999999999999876543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.06  E-value=0.00025  Score=60.09  Aligned_cols=31  Identities=29%  Similarity=0.398  Sum_probs=25.8

Q ss_pred             CCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          133 ESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       133 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +..+.-+|+|.|.+|+||||||+.+.+.+..
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3456678999999999999999998876653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.04  E-value=0.00013  Score=60.58  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=22.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +.|.|.|++|+||||+|+.+.+++..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~   30 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGL   30 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCC
Confidence            45779999999999999999887653

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00014  Score=60.79  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=22.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.|.|+|++|+|||||+++++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5689999999999999999887764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00026  Score=58.62  Aligned_cols=29  Identities=21%  Similarity=0.375  Sum_probs=25.2

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .+.+++.|.|++|+||||+|+.+...+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~   32 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHA   32 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45789999999999999999999887643

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.85  E-value=0.00034  Score=59.55  Aligned_cols=28  Identities=18%  Similarity=0.143  Sum_probs=24.8

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.+.+|.|.|++|+||||+|+.+++.+.
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4678999999999999999999988754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00024  Score=60.13  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=23.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      -.+|.++|++|+||||+|+.+...+..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            467889999999999999999887654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00034  Score=59.62  Aligned_cols=29  Identities=24%  Similarity=0.241  Sum_probs=25.8

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+..++|.|.|++|+||||+|+.+++++.
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35688999999999999999999998764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.81  E-value=0.00027  Score=58.62  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=23.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .++|.|.|.+|+||||+|+.+.+.+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999988764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.78  E-value=0.00046  Score=61.65  Aligned_cols=29  Identities=28%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +..+.|.++|++|+||||||+.+++....
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            34677889999999999999999987644

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.78  E-value=0.00035  Score=58.41  Aligned_cols=26  Identities=23%  Similarity=0.491  Sum_probs=23.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ++|+|.|++|+||||+++.+.+.+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            68999999999999999999887653

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.74  E-value=0.00039  Score=57.55  Aligned_cols=27  Identities=26%  Similarity=0.294  Sum_probs=23.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .-.|.|.|++|+||||+|+.+++++..
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            446889999999999999999988653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.74  E-value=0.00036  Score=57.66  Aligned_cols=24  Identities=33%  Similarity=0.448  Sum_probs=21.4

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      |.|.||+|+||||+|+.++.++..
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            678899999999999999988754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.74  E-value=0.00036  Score=57.79  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=20.6

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      |.++||+|+||||+|+.+++++..
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~   27 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGV   27 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            446699999999999999988765

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.74  E-value=0.00045  Score=59.21  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=22.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|.++|.||+||||||++++..+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999997765

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.63  E-value=0.00041  Score=57.75  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=21.8

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|.+.|++|+||||+|+.+++++..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~   28 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGY   28 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4668899999999999999988764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.61  E-value=0.00059  Score=56.41  Aligned_cols=26  Identities=23%  Similarity=0.192  Sum_probs=22.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ++++|+|..|+|||||+.++...+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            58999999999999999998877653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.59  E-value=0.00041  Score=57.51  Aligned_cols=26  Identities=35%  Similarity=0.239  Sum_probs=22.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -++|.|.|++|+||||+|+.+.+.+.
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999987754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.00056  Score=57.23  Aligned_cols=27  Identities=19%  Similarity=0.220  Sum_probs=23.1

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +...+|.++|++|+||||+|+.++...
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~   38 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSA   38 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            456799999999999999999887654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00063  Score=58.80  Aligned_cols=27  Identities=26%  Similarity=0.350  Sum_probs=24.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .++|+|.|++|+||||+|+.+.+++.-
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl   29 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQW   29 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            469999999999999999999999863

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.51  E-value=0.00065  Score=56.51  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=21.4

Q ss_pred             EEEecCCCChhHHHHHHHHhHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      |+|+|++|+|||||++.+...+..
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            789999999999999999887653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.49  E-value=0.00059  Score=62.80  Aligned_cols=48  Identities=21%  Similarity=0.283  Sum_probs=33.6

Q ss_pred             CcccccchHHHHHhhhc-------c-----CCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          115 QLVGVESRVEEIESLLS-------V-----ESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       115 ~~vGr~~~~~~l~~~L~-------~-----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .++|-+..++.+...+.       .     .....+.+.++|++|+|||.||+.+++...
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccc
Confidence            46777777766654331       0     011346788999999999999999988754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.37  E-value=0.00097  Score=55.80  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=22.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|.|.|++|+||||+|+.+...+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5788999999999999999987764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0011  Score=56.05  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=22.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+|.|.|++|+||||+|+.+++.+.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999998764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.21  E-value=0.0014  Score=55.24  Aligned_cols=26  Identities=31%  Similarity=0.327  Sum_probs=22.1

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++++| |.|+||+||||+|+.+++++.
T Consensus         3 ~~rii-l~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           3 GVRAV-LLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             CCEEE-EECCTTSSHHHHHHHHHHHHT
T ss_pred             ccEEE-EECCCCCCHHHHHHHHHHHhC
Confidence            45666 689999999999999998764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.19  E-value=0.0011  Score=56.03  Aligned_cols=25  Identities=24%  Similarity=0.126  Sum_probs=21.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..|.|.|++|+||||+|+.+++.+.
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3577999999999999999988875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.15  E-value=0.0013  Score=54.82  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             EEEecCCCChhHHHHHHHHhHHh
Q 037205          140 LGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      |.|.|++|+||||+|+.+++.+.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            67999999999999999988764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0017  Score=55.82  Aligned_cols=26  Identities=15%  Similarity=0.359  Sum_probs=22.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +-+|||.|.+|+||||+|+.+.+.+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999998877653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.04  E-value=0.0021  Score=55.33  Aligned_cols=28  Identities=18%  Similarity=0.247  Sum_probs=24.5

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++..+|-+.|++|.||||||+.+...+.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999987764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.01  E-value=0.0018  Score=55.96  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=22.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +|+|-|++|+||||+|+.+..++.-
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~   29 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGF   29 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5789999999999999999998764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.00  E-value=0.0017  Score=54.34  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             EEEecCCCChhHHHHHHHHhHHh
Q 037205          140 LGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      |.|.|++|+||||+|+.+++++.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            67899999999999999998864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.99  E-value=0.0017  Score=54.24  Aligned_cols=23  Identities=30%  Similarity=0.328  Sum_probs=20.7

Q ss_pred             EEEecCCCChhHHHHHHHHhHHh
Q 037205          140 LGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      |.|.|++|+||||+|+.+++.+.
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            67889999999999999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.94  E-value=0.002  Score=54.47  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -.|.|.|+||+||||+|+.++.++.
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHC
Confidence            3455789999999999999998754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.90  E-value=0.0019  Score=54.75  Aligned_cols=27  Identities=22%  Similarity=0.164  Sum_probs=23.9

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.++|.|.|+||+||||+|+.+++.+.
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457899999999999999999988764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.83  E-value=0.0043  Score=57.08  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=28.7

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .++...+........+|||.|+||+|||||..++...+
T Consensus        38 ~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          38 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            34444444445578999999999999999999887654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.72  E-value=0.0036  Score=58.58  Aligned_cols=47  Identities=21%  Similarity=0.090  Sum_probs=32.8

Q ss_pred             cccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          116 LVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       116 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.|.+..+.+..+.+..+....+.+.++|+||+|||++|..+++...
T Consensus       133 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         133 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            33444444443333333555677999999999999999999887764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.0026  Score=53.09  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .++| |.|++|+||||+|+.+++.+..
T Consensus         3 mrIv-l~G~pGSGKtT~a~~La~~~g~   28 (180)
T d1akya1           3 IRMV-LIGPPGAGKGTQAPNLQERFHA   28 (180)
T ss_dssp             CEEE-EECCTTSSHHHHHHHHHHHHCC
T ss_pred             eEEE-EECCCCCCHHHHHHHHHHHhCC
Confidence            3444 7799999999999999987643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.0023  Score=54.13  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=20.7

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|.|+|++|+|||||++.+.+...
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            477999999999999999887653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0048  Score=56.84  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=27.9

Q ss_pred             HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +...+.....+..+|+|+|.||+|||||...+...+.
T Consensus        43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            3333333455689999999999999999998876544

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0043  Score=53.27  Aligned_cols=29  Identities=24%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+...+|.++|+.|+||||.+.+++..+.
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45578999999999999988887776654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0029  Score=52.71  Aligned_cols=23  Identities=26%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             EEEecCCCChhHHHHHHHHhHHh
Q 037205          140 LGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      |.|.|++|+||||+|+.+++++.
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            66899999999999999998764

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.59  E-value=0.005  Score=52.98  Aligned_cols=30  Identities=20%  Similarity=0.305  Sum_probs=24.5

Q ss_pred             CCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          133 ESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       133 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ......+|.++|+.|+||||.+.+++.++.
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            455678999999999999988877776654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0026  Score=53.56  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=21.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      |.|.|+|++|+|||||++.+.++..
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            4578999999999999999887653

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.0066  Score=55.59  Aligned_cols=48  Identities=21%  Similarity=0.293  Sum_probs=35.5

Q ss_pred             CCcccccchHHHHHhhhc-------cCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          114 SQLVGVESRVEEIESLLS-------VESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       114 ~~~vGr~~~~~~l~~~L~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|-+..++.+...+.       ..+....++.++|++|+|||.||+.++..+
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhc
Confidence            457888888887766542       112235578899999999999999987654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.55  E-value=0.0023  Score=59.13  Aligned_cols=47  Identities=23%  Similarity=0.153  Sum_probs=32.6

Q ss_pred             CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHh
Q 037205          111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      .+...++|.+..+..|.-.+..  .+..-|.|.|.+|+||||||+.+..
T Consensus         4 ~~f~~I~Gq~~~kral~laa~~--~~~h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_           4 FPFSAIVGQEDMKLALLLTAVD--PGIGGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHHC--GGGCCEEEECCGGGCTTHHHHHHHH
T ss_pred             CChhhccCcHHHHHHHHHHHhc--cCCCeEEEECCCCccHHHHHHHHHH
Confidence            4556789998766655432221  1123478999999999999998764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.006  Score=54.49  Aligned_cols=38  Identities=24%  Similarity=0.372  Sum_probs=29.9

Q ss_pred             hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ++..+...+.  .++.++|.+.|=||+||||+|..++..+
T Consensus         7 ~~~~~~~~~~--~~~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2           7 SLSALVDDIA--RNEHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             CHHHHHHHHH--TTSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cHHHHHHHhh--cCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4555666665  5678999999999999999999877654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.47  E-value=0.003  Score=53.14  Aligned_cols=22  Identities=36%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      +-+|||+|+.|+||||+|..+-
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999998764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.43  E-value=0.0039  Score=52.08  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ++|.|+|++|+|||||++.+.++.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            478899999999999999887664

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.41  E-value=0.0043  Score=54.84  Aligned_cols=46  Identities=24%  Similarity=0.225  Sum_probs=35.3

Q ss_pred             CcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          115 QLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       115 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +|||....++++.+.+..-...-.-|.|+|.+|+|||++|+.+.+.
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence            4789988888888877652222234679999999999999998754

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.25  E-value=0.0069  Score=51.86  Aligned_cols=27  Identities=30%  Similarity=0.161  Sum_probs=22.6

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.+++.++|++|+||||.+.+++..+.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999999998888776654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.01  Score=53.27  Aligned_cols=28  Identities=18%  Similarity=0.204  Sum_probs=23.1

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ....-+|||.|..|+||||||..+...+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHH
Confidence            3346699999999999999999876654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.12  E-value=0.0059  Score=54.32  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=21.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.|+|+|=||+||||+|..++..+.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA   26 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHH
Confidence            6799999999999999998776654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.10  E-value=0.0077  Score=51.65  Aligned_cols=29  Identities=28%  Similarity=0.293  Sum_probs=19.6

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ....+|.++|+.|+||||.+.+++..+..
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~   38 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK   38 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45789999999999999888777766543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.07  E-value=0.007  Score=51.76  Aligned_cols=27  Identities=22%  Similarity=0.192  Sum_probs=22.2

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ++.++|.++|+.|+||||.+.+++..+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999888777654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.07  E-value=0.0044  Score=55.73  Aligned_cols=28  Identities=18%  Similarity=0.229  Sum_probs=21.1

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+.++|||.|.+|.||||+|+.+.+.+.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHh
Confidence            3567999999999999999998877654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0067  Score=50.63  Aligned_cols=24  Identities=25%  Similarity=0.410  Sum_probs=21.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +.|.|+|++|+|||||++.+..+.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            578899999999999999988664

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.89  E-value=0.0057  Score=51.49  Aligned_cols=28  Identities=25%  Similarity=0.116  Sum_probs=23.4

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...-+|+|-|.-|+||||+|+.+.+.+.
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3456899999999999999998877653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.012  Score=53.48  Aligned_cols=28  Identities=32%  Similarity=0.381  Sum_probs=23.8

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ...-+|||.|.+|+||||+|+.+...+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            4477999999999999999998876653

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.0077  Score=50.89  Aligned_cols=37  Identities=22%  Similarity=0.167  Sum_probs=26.1

Q ss_pred             HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .|-.+|..+-..-.++.|.|.+|+||||||.+++...
T Consensus        11 ~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          11 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3444453222234689999999999999999887654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.70  E-value=0.0091  Score=52.07  Aligned_cols=34  Identities=24%  Similarity=0.211  Sum_probs=25.4

Q ss_pred             hhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          128 SLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       128 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+|..+=..-+++.|+|.+|+||||+|.+++...
T Consensus        27 ~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          27 KLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             HHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4444333345799999999999999999887653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.52  E-value=0.01  Score=51.57  Aligned_cols=36  Identities=14%  Similarity=0.100  Sum_probs=27.1

Q ss_pred             HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      |.+.|..+-..-.++.|+|.+|+|||+||.+++...
T Consensus        15 LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            444554333446789999999999999999987664

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.015  Score=50.46  Aligned_cols=35  Identities=17%  Similarity=0.163  Sum_probs=26.7

Q ss_pred             HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |..+|..+-..-+++.|+|.+|+|||++|.+++..
T Consensus        26 LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          26 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            33455444445679999999999999999988754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.44  E-value=0.015  Score=53.04  Aligned_cols=46  Identities=17%  Similarity=0.377  Sum_probs=32.6

Q ss_pred             cccccchHHHHHhhhcc-------CCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          116 LVGVESRVEEIESLLSV-------ESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       116 ~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ++|.+..++.+...+..       ......++.++|++|+|||.||+.+++.+
T Consensus        25 v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          25 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            66777777666554321       11224478899999999999999988775

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.42  E-value=0.011  Score=47.50  Aligned_cols=21  Identities=29%  Similarity=0.211  Sum_probs=18.2

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.|+|.+|+|||||...+...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            669999999999999987644

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.37  E-value=0.013  Score=52.37  Aligned_cols=27  Identities=37%  Similarity=0.347  Sum_probs=23.2

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +..++|.+.|=||+||||+|..++..+
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHH
Confidence            457889999999999999999877664

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.35  E-value=0.012  Score=51.02  Aligned_cols=22  Identities=27%  Similarity=0.226  Sum_probs=19.3

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ||+|.|+.|.|||||...+.+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            7899999999999999987643

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.28  E-value=0.013  Score=52.55  Aligned_cols=25  Identities=32%  Similarity=0.585  Sum_probs=21.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +.|+|+|=||+||||+|..++..+.
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA   27 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALA   27 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5788999999999999998776543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.28  E-value=0.0093  Score=51.59  Aligned_cols=35  Identities=14%  Similarity=0.157  Sum_probs=25.4

Q ss_pred             HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |..+|..+=..-+++.|+|.+|+||||||.++...
T Consensus        23 LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          23 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             HHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             HHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            33444432234568999999999999999987654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.012  Score=50.10  Aligned_cols=24  Identities=17%  Similarity=0.202  Sum_probs=21.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+|.|+|++|+|||||.+.+....
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            478899999999999999887664

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.14  E-value=0.017  Score=47.41  Aligned_cols=33  Identities=27%  Similarity=0.282  Sum_probs=23.0

Q ss_pred             HhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          127 ESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       127 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+.+.......+ |+|+|.+|+|||||..++...
T Consensus         4 ~~~~~~~~k~~k-I~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           4 LQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             HHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred             HHhccccCCCCE-EEEECCCCCCHHHHHHHHhCC
Confidence            344443333444 669999999999999887544

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.11  E-value=0.015  Score=53.11  Aligned_cols=25  Identities=24%  Similarity=0.258  Sum_probs=21.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .++.++|+||+|||.||+.++....
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhc
Confidence            3566699999999999999988764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.012  Score=50.19  Aligned_cols=19  Identities=37%  Similarity=0.405  Sum_probs=17.6

Q ss_pred             EEEEecCCCChhHHHHHHH
Q 037205          139 ALGIWGIGGIGKTTIARAT  157 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v  157 (439)
                      +|||+|+.|+||||.|+.+
T Consensus         5 iIgitG~igSGKStv~~~l   23 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAF   23 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            8999999999999999865

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.96  E-value=0.015  Score=48.81  Aligned_cols=26  Identities=12%  Similarity=0.351  Sum_probs=22.5

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ++++.|+|+|.+|+|||||...+.+.
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCC
Confidence            45678999999999999999998753

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.93  E-value=0.013  Score=47.23  Aligned_cols=21  Identities=38%  Similarity=0.387  Sum_probs=18.3

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |+|+|.+|+|||||..++.+.
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999987654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.017  Score=49.37  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..|+|-|+-|+||||+|+.+.+.+..
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~   29 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCA   29 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            57889999999999999998887653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.87  E-value=0.019  Score=48.48  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|+|-|+-|+||||+++.+.+.+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999887664

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.85  E-value=0.018  Score=49.64  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=26.9

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..|.++|..+-..-.++.|.|.+|+|||++|.+++...
T Consensus        21 ~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          21 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34444554222234789999999999999999987654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.83  E-value=0.015  Score=50.72  Aligned_cols=23  Identities=30%  Similarity=0.237  Sum_probs=20.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|.|||||++.++.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            35899999999999999998763

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.76  E-value=0.012  Score=50.06  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=21.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.+++|+|+.|+|||||.+.++.-.
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            3579999999999999999876543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.76  E-value=0.014  Score=50.55  Aligned_cols=22  Identities=27%  Similarity=0.228  Sum_probs=19.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -.+++|+|+.|+|||||.+.+.
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~   52 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIG   52 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcchhhHhcc
Confidence            3589999999999999998655

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.017  Score=50.18  Aligned_cols=27  Identities=22%  Similarity=0.201  Sum_probs=23.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +++.|+|-|+-|+||||+++.+.+.+.
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            357899999999999999999887653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.75  E-value=0.023  Score=46.47  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..--|.++|.+|+|||||..++...
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3345779999999999999887543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.71  E-value=0.016  Score=49.29  Aligned_cols=21  Identities=48%  Similarity=0.525  Sum_probs=18.6

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q 037205          138 YALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -+|||+|..|+||||+|+.+-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998663

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.015  Score=50.76  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -.+++|.|+.|.|||||++.++
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~   52 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVN   52 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHc
Confidence            4589999999999999999765

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.018  Score=49.96  Aligned_cols=23  Identities=26%  Similarity=0.221  Sum_probs=19.9

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|.|+.|.|||||.+.++-
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            35899999999999999997653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.53  E-value=0.016  Score=51.21  Aligned_cols=22  Identities=32%  Similarity=0.373  Sum_probs=19.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -.+++|+|+.|.|||||++.+.
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~   49 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCIN   49 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHH
Confidence            4589999999999999999765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.50  E-value=0.019  Score=46.63  Aligned_cols=20  Identities=20%  Similarity=0.454  Sum_probs=17.6

Q ss_pred             EEEecCCCChhHHHHHHHHh
Q 037205          140 LGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~  159 (439)
                      |.++|.+|+|||||+..+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999987664

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.41  E-value=0.025  Score=52.70  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ...+..+|+.|+|||.||+.++...
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhc
Confidence            4568899999999999999987654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.39  E-value=0.02  Score=49.88  Aligned_cols=23  Identities=35%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|+|+.|.|||||.+.+..
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHHc
Confidence            35899999999999999997653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.36  E-value=0.02  Score=46.35  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=18.6

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.++|.+|+|||||..++.+.
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999987654

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.36  E-value=0.018  Score=50.30  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -..++|+|..|.|||||++.+..-
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            357999999999999999987643

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=0.019  Score=47.11  Aligned_cols=21  Identities=33%  Similarity=0.360  Sum_probs=18.3

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.|+|.+|+|||||+..+.+.
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999987654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.32  E-value=0.017  Score=50.87  Aligned_cols=23  Identities=30%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -..++|+|+.|.|||||++.+..
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            35799999999999999998764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.013  Score=50.73  Aligned_cols=26  Identities=19%  Similarity=0.133  Sum_probs=22.7

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .+.|+|-|+-|+||||+|+.+.+.+.
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999887653

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.25  E-value=0.022  Score=49.62  Aligned_cols=22  Identities=18%  Similarity=0.142  Sum_probs=19.4

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +++|.|+.|.|||||.+.++.-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            7889999999999999987644

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.021  Score=46.45  Aligned_cols=22  Identities=27%  Similarity=0.314  Sum_probs=18.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.|+|.+|+|||||+.++.+.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3779999999999999887653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.021  Score=50.29  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -..++|+|..|.|||||++.+..
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            45899999999999999998763

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.07  E-value=0.023  Score=46.38  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .|+|+|.+|+|||||..++...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.06  E-value=0.023  Score=49.69  Aligned_cols=25  Identities=24%  Similarity=0.094  Sum_probs=21.2

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .-..++|+|+.|.|||||++.+..-
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999987643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.06  E-value=0.021  Score=49.37  Aligned_cols=23  Identities=26%  Similarity=0.143  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      --+++|.|+.|.|||||.+.+..
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            45899999999999999997663

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.02  E-value=0.033  Score=47.71  Aligned_cols=24  Identities=33%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             eEEEEe-cCCCChhHHHHHHHHhHH
Q 037205          138 YALGIW-GIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~-G~gGiGKTtLA~~v~~~~  161 (439)
                      ++|+|+ |-||+||||+|..++..+
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHH
Confidence            688888 789999999999877654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.01  E-value=0.023  Score=50.91  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=21.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.+++|+|+.|.|||||++.+..-+
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            4579999999999999999987543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=92.96  E-value=0.023  Score=45.99  Aligned_cols=21  Identities=33%  Similarity=0.420  Sum_probs=18.0

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.|+|.+|+|||||...+.+.
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            679999999999999886543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.024  Score=46.19  Aligned_cols=21  Identities=24%  Similarity=0.656  Sum_probs=17.9

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.++|.+|+|||||...+.+.
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            568999999999999887653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.92  E-value=0.032  Score=45.67  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=21.6

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -...|+|+|.+|+|||||..++.+.
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCC
Confidence            3567999999999999999998754

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.88  E-value=0.024  Score=48.52  Aligned_cols=36  Identities=14%  Similarity=0.040  Sum_probs=25.3

Q ss_pred             HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .|.++|..+-..-.++.|+|.+|+|||+||.+++..
T Consensus        14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            344555433234568889999999999999876543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.83  E-value=0.029  Score=48.26  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=20.6

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      +.+++..|.|.-|.|||||.+.+.
T Consensus         1 ~~iPv~iitGFLGaGKTTll~~lL   24 (222)
T d1nija1           1 NPIAVTLLTGFLGAGKTTLLRHIL   24 (222)
T ss_dssp             CCEEEEEEEESSSSSCHHHHHHHH
T ss_pred             CCCCEEEEeeCCCCCHHHHHHHHH
Confidence            358899999999999999987644

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.83  E-value=0.03  Score=45.99  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=21.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...|+|+|.+|+|||||...+...
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999999988754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.027  Score=45.77  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=18.2

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -|.|+|.+|+|||+|+..+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367999999999999998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.026  Score=46.09  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=18.8

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.|+|.+|+|||||...+.+.
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4779999999999999987653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.79  E-value=0.032  Score=48.32  Aligned_cols=24  Identities=21%  Similarity=0.178  Sum_probs=21.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+|||+|..|+||||+|..+.+..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            589999999999999999886653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.026  Score=45.90  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=18.8

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.++|-+|+|||||..++.+.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999987654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.76  E-value=0.028  Score=45.80  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=18.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.++|.+|+|||||...+.+.
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3789999999999999987643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.025  Score=45.83  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=18.2

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.|+|.+|+|||||+..+.+.
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999987643

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.72  E-value=0.026  Score=45.86  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.1

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.|+|.+|+|||||..++.+.
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            668899999999999987654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.029  Score=45.75  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=18.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.++|.+|+|||||+.++.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999987643

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.034  Score=47.16  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=22.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +.|+|-|+.|+||||+++.+.+.+..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~   28 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQ   28 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46889999999999999998877643

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.027  Score=45.87  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=18.7

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.++|.+|+|||||+..+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            3678999999999999987654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.65  E-value=0.056  Score=47.85  Aligned_cols=39  Identities=21%  Similarity=0.214  Sum_probs=29.1

Q ss_pred             HHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          125 EIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       125 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|...|. .+-..-+++-|+|.+|+||||||.+++.....
T Consensus        47 ~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~   86 (269)
T d1mo6a1          47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA   86 (269)
T ss_dssp             HHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhc
Confidence            4445553 34445679999999999999999888766554

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.64  E-value=0.04  Score=47.19  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             eEEEEe-cCCCChhHHHHHHHHhHHh
Q 037205          138 YALGIW-GIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~-G~gGiGKTtLA~~v~~~~~  162 (439)
                      ++|+|+ +-||+||||+|..++..+.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la   28 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALG   28 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            689999 5799999999998876653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.62  E-value=0.031  Score=46.96  Aligned_cols=23  Identities=22%  Similarity=0.137  Sum_probs=19.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +.|.|+|.+|+|||||...+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999887643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.61  E-value=0.028  Score=45.99  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=18.3

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -|.|+|.+|+|||||...+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            378999999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.031  Score=45.56  Aligned_cols=21  Identities=33%  Similarity=0.662  Sum_probs=18.3

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.++|.+|+|||+|...+.+.
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            568999999999999987754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.56  E-value=0.032  Score=44.46  Aligned_cols=21  Identities=29%  Similarity=0.359  Sum_probs=17.9

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -|+++|.+|+|||||...+.+
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999987554

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.027  Score=46.63  Aligned_cols=22  Identities=36%  Similarity=0.368  Sum_probs=18.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.|+|.+|+|||||+..+.+.
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3679999999999999887643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=0.03  Score=45.86  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=19.0

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      --|.|+|.+|+|||+|...+.+.
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35679999999999999886643

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.48  E-value=0.023  Score=49.52  Aligned_cols=23  Identities=39%  Similarity=0.461  Sum_probs=20.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -.+++|.|+.|.|||||++.+..
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHc
Confidence            35899999999999999997763

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.028  Score=45.86  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=18.7

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.|+|.+|+|||||...+.+.
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3679999999999999987653

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.43  E-value=0.054  Score=48.00  Aligned_cols=24  Identities=25%  Similarity=0.585  Sum_probs=20.9

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      ..++|.|.+|+|||+|+..+.+..
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHH
Confidence            348999999999999999988764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=92.35  E-value=0.031  Score=48.73  Aligned_cols=24  Identities=33%  Similarity=0.340  Sum_probs=20.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.+++|+|+.|.|||||.+.+..-
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999987643

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.31  E-value=0.031  Score=48.73  Aligned_cols=24  Identities=29%  Similarity=0.255  Sum_probs=20.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.+++|.|+.|.|||||.+.+.--
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            358999999999999999987643

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.03  Score=45.79  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=18.1

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -|.++|.+|+|||||+..+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999988654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.30  E-value=0.047  Score=44.89  Aligned_cols=23  Identities=35%  Similarity=0.395  Sum_probs=18.5

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      ..+ |.++|.+|+|||||..++..
T Consensus        17 ~~K-I~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          17 ELR-ILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CEE-EEEEEETTSSHHHHHHHTCC
T ss_pred             eEE-EEEECCCCCCHHHHHHHHhc
Confidence            344 55999999999999987643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.30  E-value=0.036  Score=46.72  Aligned_cols=23  Identities=22%  Similarity=0.156  Sum_probs=19.5

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +.|.|+|.+|+|||||..++...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999887653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.29  E-value=0.033  Score=45.11  Aligned_cols=21  Identities=19%  Similarity=0.370  Sum_probs=18.4

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.++|.+|+|||||..++.+.
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999987654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.036  Score=45.03  Aligned_cols=21  Identities=29%  Similarity=0.556  Sum_probs=18.2

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.++|.+|+|||+|...+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            679999999999999987654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.037  Score=45.35  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=18.7

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.|+|.+|+|||||+..+.+.
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999887543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.15  E-value=0.033  Score=49.00  Aligned_cols=24  Identities=25%  Similarity=0.140  Sum_probs=20.5

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -.+++|.|+.|.|||||++.++--
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCC
Confidence            358999999999999999987643

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.05  E-value=0.063  Score=43.57  Aligned_cols=23  Identities=30%  Similarity=0.199  Sum_probs=18.8

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .-|.|+|.+|+|||||..++...
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            34669999999999999876543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.037  Score=45.36  Aligned_cols=22  Identities=32%  Similarity=0.309  Sum_probs=18.1

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.|+|.+|+|||+|...+.+.
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678899999999999876543

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.99  E-value=0.037  Score=45.02  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=17.9

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.++|.+|+|||+|..++.+.
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999986644

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.98  E-value=0.029  Score=46.21  Aligned_cols=20  Identities=25%  Similarity=0.428  Sum_probs=18.0

Q ss_pred             EEEecCCCChhHHHHHHHHh
Q 037205          140 LGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~  159 (439)
                      |+|+|.+|+|||||...+..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999988754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.038  Score=44.77  Aligned_cols=21  Identities=29%  Similarity=0.594  Sum_probs=18.3

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.++|.+|+|||||..++.+.
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999987654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.90  E-value=0.047  Score=44.21  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=19.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      ..-|.|+|.+|+|||||...+.+
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            34577899999999999988654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.043  Score=44.65  Aligned_cols=21  Identities=29%  Similarity=0.335  Sum_probs=18.2

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -|.|+|.+|+|||+|+.++.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.84  E-value=0.042  Score=45.35  Aligned_cols=20  Identities=30%  Similarity=0.499  Sum_probs=17.7

Q ss_pred             EEEecCCCChhHHHHHHHHh
Q 037205          140 LGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~  159 (439)
                      |.++|.+|+|||||+..+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999987654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.051  Score=44.81  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=18.8

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.|+|.+|+|||+|..++.+.
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4779999999999999887644

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=91.81  E-value=0.05  Score=44.86  Aligned_cols=23  Identities=26%  Similarity=0.357  Sum_probs=19.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +-|.|.|.+|+||||||..+..+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            45789999999999999876543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.81  E-value=0.032  Score=45.84  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=19.0

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .|+|+|.+|+|||||...+.++
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999887643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.69  E-value=0.053  Score=43.82  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      ..-+|.+.|.=|.||||+++.+++.+.
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            345899999999999999999876653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.64  E-value=0.062  Score=47.20  Aligned_cols=39  Identities=21%  Similarity=0.396  Sum_probs=27.5

Q ss_pred             hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .+.++...+.......-.|.|+|.+|+|||||...++.+
T Consensus        17 ~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          17 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            344555555444344556779999999999999987754

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.06  Score=45.34  Aligned_cols=25  Identities=20%  Similarity=0.181  Sum_probs=20.7

Q ss_pred             eEEEEecCC-CChhHHHHHHHHhHHh
Q 037205          138 YALGIWGIG-GIGKTTIARATFDKIS  162 (439)
Q Consensus       138 ~vi~I~G~g-GiGKTtLA~~v~~~~~  162 (439)
                      +.+.|.|-| |+||||++..++..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH
Confidence            467899998 9999999998776653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.54  E-value=0.044  Score=45.73  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=18.7

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.|+|.+|+|||||...+...
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            4779999999999999987643

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=91.54  E-value=0.049  Score=44.00  Aligned_cols=20  Identities=30%  Similarity=0.328  Sum_probs=17.0

Q ss_pred             EEEecCCCChhHHHHHHHHh
Q 037205          140 LGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~  159 (439)
                      |.+.|.+|+|||||..++..
T Consensus         5 i~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            56889999999999987644

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.53  E-value=0.05  Score=44.88  Aligned_cols=19  Identities=37%  Similarity=0.492  Sum_probs=16.5

Q ss_pred             EEEecCCCChhHHHHHHHH
Q 037205          140 LGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~  158 (439)
                      |.++|.+|+|||+|..++.
T Consensus         5 ivllG~~~vGKTsl~~r~~   23 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMK   23 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            5699999999999998754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.046  Score=44.64  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=18.1

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -|.++|.+|+|||+|+..+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            477999999999999988754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.51  E-value=0.041  Score=45.55  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=18.7

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.|+|.+|+|||+|...+.+.
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4789999999999999887654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.44  E-value=0.044  Score=45.57  Aligned_cols=18  Identities=28%  Similarity=0.479  Sum_probs=16.5

Q ss_pred             EEEecCCCChhHHHHHHH
Q 037205          140 LGIWGIGGIGKTTIARAT  157 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v  157 (439)
                      |.|.|.+|+|||||..++
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            679999999999999986

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.44  E-value=0.035  Score=45.82  Aligned_cols=21  Identities=24%  Similarity=0.490  Sum_probs=18.4

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -|+|+|.+|+|||||...+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999987653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.38  E-value=0.053  Score=44.73  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=19.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .-|.|.|.+|+||||||..+..+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            45789999999999999886543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.36  E-value=0.048  Score=44.91  Aligned_cols=21  Identities=19%  Similarity=0.205  Sum_probs=18.1

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.++|.+|+|||+|+..+.+.
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999887654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.35  E-value=0.046  Score=52.13  Aligned_cols=26  Identities=31%  Similarity=0.339  Sum_probs=22.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      +-|.++|++|+|||-||+.++..+..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~V   75 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLANA   75 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45889999999999999999876644

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.04  Score=47.75  Aligned_cols=22  Identities=27%  Similarity=0.267  Sum_probs=19.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -.+++|.|+.|.|||||.+.+.
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~   46 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMA   46 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHh
Confidence            3589999999999999988654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.30  E-value=0.053  Score=44.06  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=18.4

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -|.|+|.+|+|||||...+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            477999999999999998764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.25  E-value=0.057  Score=45.98  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=22.6

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      -+.|+|-|+-|+||||+++.+.+.+.
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            35789999999999999999887764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=0.055  Score=44.16  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=18.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.++|.+|+|||||+..+.+.
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999877643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=91.15  E-value=0.046  Score=43.79  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=18.2

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |+++|.+|+|||||..++...
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999887643

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.12  E-value=0.063  Score=47.49  Aligned_cols=39  Identities=23%  Similarity=0.192  Sum_probs=28.3

Q ss_pred             HHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          125 EIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       125 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      .|..+|. .+-..-+++-|+|.+|+||||||.+++.....
T Consensus        44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk   83 (268)
T d1xp8a1          44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK   83 (268)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHh
Confidence            4445553 22234569999999999999999988776554

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.05  E-value=0.058  Score=44.19  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=17.8

Q ss_pred             EEEecCCCChhHHHHHHHHh
Q 037205          140 LGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~  159 (439)
                      |.++|.+|+|||||...+.+
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            77999999999999998654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.04  E-value=0.03  Score=49.26  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=19.3

Q ss_pred             eeEEEEecCCCChhHHHHHHHH
Q 037205          137 VYALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      -..++|+|..|.|||||++.+.
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~   65 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIP   65 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHH
Confidence            3579999999999999998765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.04  E-value=0.053  Score=44.11  Aligned_cols=21  Identities=38%  Similarity=0.665  Sum_probs=18.1

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.++|.+|+|||||...+.+.
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568899999999999987754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=90.94  E-value=0.039  Score=45.13  Aligned_cols=25  Identities=12%  Similarity=0.146  Sum_probs=21.1

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHh
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      ++...|+|+|.+++|||||..++..
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            4467799999999999999987754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=90.94  E-value=0.065  Score=47.10  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=20.2

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .+..|+|.+|+||||||.+++..+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467799999999999999877554

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.031  Score=45.68  Aligned_cols=21  Identities=38%  Similarity=0.555  Sum_probs=16.9

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.++|.+|+|||||..++.+.
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999876543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=90.84  E-value=0.069  Score=43.71  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=19.1

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .-|.|.|.+|+||||||..+..+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            45789999999999999875544

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=0.059  Score=44.75  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=17.5

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.++|.+|+|||+|..++.+.
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            668999999999999876543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.69  E-value=0.063  Score=44.42  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=17.7

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |.+.|.+|+|||+|..++...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999986433

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.50  E-value=0.07  Score=43.78  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=18.6

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.++|.+|+|||||...+.+.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4679999999999999877654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.48  E-value=0.039  Score=45.08  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=19.6

Q ss_pred             CeeEEEEecCCCChhHHHHHHHHhH
Q 037205          136 DVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       136 ~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..+ |.++|.+|+|||||..++.+.
T Consensus        12 ~~k-IvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          12 EMR-ILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             CEE-EEEEEETTSSHHHHHHHTTCC
T ss_pred             eEE-EEEECCCCCCHHHHHHHHhcC
Confidence            455 558999999999999987644

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.42  E-value=0.033  Score=44.63  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.8

Q ss_pred             EEEecCCCChhHHHHHHHHhH
Q 037205          140 LGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       140 i~I~G~gGiGKTtLA~~v~~~  160 (439)
                      |+++|.+|+|||||..++...
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999987654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.34  E-value=0.063  Score=44.13  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|+|+|.+|+|||||..++...
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999888754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.76  E-value=0.11  Score=44.43  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=25.2

Q ss_pred             hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -+++|.++|.   +  +...++|.+|+|||||...+..+
T Consensus        85 g~~~L~~~l~---~--kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          85 GIEELKEYLK---G--KISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             THHHHHHHHS---S--SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             hHhhHHHHhc---C--CeEEEECCCCCCHHHHHHhhcch
Confidence            3667777774   1  35678999999999999876543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.60  E-value=0.052  Score=44.29  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=8.7

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      -|.|+|-+|+|||||...+...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3778999999999999877643

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.43  E-value=0.084  Score=45.08  Aligned_cols=21  Identities=33%  Similarity=0.403  Sum_probs=17.8

Q ss_pred             eEEEEecCCCChhHHHHHHHH
Q 037205          138 YALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~  158 (439)
                      .-|.+.|.+|+|||||..++.
T Consensus         7 ~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            357899999999999998764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.16  E-value=0.14  Score=44.97  Aligned_cols=38  Identities=18%  Similarity=0.158  Sum_probs=27.3

Q ss_pred             HHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          125 EIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       125 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      .|..+|. .+-..-+++-|+|.+|+||||||.+++....
T Consensus        41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q   79 (263)
T d1u94a1          41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   79 (263)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence            4455553 2222346999999999999999998876653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.01  E-value=0.11  Score=45.97  Aligned_cols=26  Identities=27%  Similarity=0.215  Sum_probs=22.8

Q ss_pred             CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          135 KDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       135 ~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +++|-|+|+|-+|.|||||+.++...
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHh
Confidence            46889999999999999999988654

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=88.41  E-value=0.13  Score=47.53  Aligned_cols=36  Identities=22%  Similarity=0.098  Sum_probs=24.7

Q ss_pred             chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          121 SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       121 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .....+...+.     .++..|+|.+|.||||++..+...+
T Consensus       152 ~Q~~A~~~al~-----~~~~vI~G~pGTGKTt~i~~~l~~l  187 (359)
T d1w36d1         152 WQKVAAAVALT-----RRISVISGGPGTGKTTTVAKLLAAL  187 (359)
T ss_dssp             HHHHHHHHHHT-----BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-----CCeEEEEcCCCCCceehHHHHHHHH
Confidence            34444444442     3688899999999999987655443

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=88.38  E-value=0.14  Score=45.01  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=20.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .++.|.|.+|+||||+|.+++...
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhh
Confidence            478899999999999999887654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=88.21  E-value=0.17  Score=42.40  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=28.9

Q ss_pred             HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +..+..+|. +..+-..+.++|+++.|||++|..+.+-+
T Consensus        40 l~~l~~~l~-~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          40 LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            455666664 44567889999999999999998765543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=86.75  E-value=0.2  Score=44.01  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             eeEEEEecCCCChhHHHHHHHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      +|-|+|.|-.|.|||||+..+..
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHH
Confidence            57899999999999999998753

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=86.56  E-value=0.32  Score=42.67  Aligned_cols=37  Identities=19%  Similarity=0.159  Sum_probs=27.8

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ..+..+|....+.-..+.++|+|+.|||+++..+.+-
T Consensus        91 ~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_          91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3455566545456778899999999999999876554

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.51  E-value=0.63  Score=40.72  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=20.0

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      .-.|+|+|+|.+|||||+..+..+
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             ceEEEEEecCccchhhhhhhhhcc
Confidence            456899999999999999876543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=86.39  E-value=0.15  Score=46.30  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=19.5

Q ss_pred             EEEEecCCCChhHHHHHHHHhHH
Q 037205          139 ALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -|.|.|..|.||||+...+...+
T Consensus       168 nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEeeccccchHHHHHHhhhc
Confidence            47899999999999999876553

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=86.05  E-value=0.22  Score=45.21  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKIS  162 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~~  162 (439)
                      +-.|.|=|+=|+||||+++.+.+.+.
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhc
Confidence            45677889999999999999988754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=85.78  E-value=0.34  Score=45.18  Aligned_cols=42  Identities=19%  Similarity=0.311  Sum_probs=29.9

Q ss_pred             cccc-chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205          117 VGVE-SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       117 vGr~-~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      .|.. ..++.+.+++.   ....+|.|.|+.|.||||+...+.+..
T Consensus       140 LG~~~~~~~~l~~l~~---~~~GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         140 LGMTAHNHDNFRRLIK---RPHGIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             SCCCHHHHHHHHHHHT---SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHh---hhhceEEEEcCCCCCccHHHHHHhhhh
Confidence            4544 34455655554   345789999999999999998876654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.50  E-value=0.28  Score=41.75  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=19.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ++|+|.|-++.|||||+..+...
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhh
Confidence            56999999999999999877543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=83.87  E-value=0.16  Score=44.81  Aligned_cols=20  Identities=35%  Similarity=0.268  Sum_probs=17.2

Q ss_pred             EEEEecCCCChhHHHHHHHH
Q 037205          139 ALGIWGIGGIGKTTIARATF  158 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~  158 (439)
                      .++|.|.+|+|||+|+....
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHH
Confidence            47899999999999998754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.58  E-value=0.41  Score=42.17  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             CCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          134 SKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...+.+|+|+|.-+.|||||+-.++..
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            456999999999999999999887654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=83.40  E-value=0.28  Score=39.99  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=18.9

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -|+|+|.++.|||||..++..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999998764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=82.83  E-value=0.29  Score=43.14  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=18.3

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -|||+|+|.+|||||-.++-+
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHC
Confidence            489999999999999887654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=82.82  E-value=0.31  Score=42.97  Aligned_cols=21  Identities=0%  Similarity=0.075  Sum_probs=16.3

Q ss_pred             CCeEEecHHHHHHHHHHHhhh
Q 037205          372 NNKITMHDLLQELGRDIVSQE  392 (439)
Q Consensus       372 ~~~~~mHdlv~~~a~~i~~~e  392 (439)
                      ...|+.|.-|-++|..+.+..
T Consensus       273 ~~nyRs~~~I~~~an~l~~~n  293 (306)
T d1uaaa1         273 EQNYRSSGRILKAANILIANN  293 (306)
T ss_dssp             CCBSSSCHHHHHHHHHHHHTS
T ss_pred             CCCCCCCHHHHHHHHHHHHcC
Confidence            345899999999998887643

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.53  E-value=0.44  Score=43.35  Aligned_cols=36  Identities=17%  Similarity=0.357  Sum_probs=27.7

Q ss_pred             HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205          124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      +.|.+++. ..+.+|-|+|+|-.|.|||||+-.+...
T Consensus         5 ~~~~~lm~-~~~~IRNI~iiGhvd~GKTTL~d~Ll~~   40 (341)
T d1n0ua2           5 DQMRSLMD-KVTNVRNMSVIAHVDHGKSTLTDSLVQR   40 (341)
T ss_dssp             HHHHHHHH-CGGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             HHHHHHhc-CcccCcEEEEEeCCCCcHHHHHHHHHHH
Confidence            44555554 2456999999999999999999887643

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=82.46  E-value=0.39  Score=42.50  Aligned_cols=26  Identities=19%  Similarity=0.010  Sum_probs=22.3

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKISR  163 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~~~  163 (439)
                      ..++|.|.+|+|||+|+..+.+....
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            46889999999999999998876643

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=81.97  E-value=0.31  Score=44.14  Aligned_cols=25  Identities=28%  Similarity=0.222  Sum_probs=20.2

Q ss_pred             eeEEEEecCCCChhHHHHHHHHhHH
Q 037205          137 VYALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       137 ~~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      +..|.|=|.=|+||||+++.+.+..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC--
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHh
Confidence            4458899999999999999987654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=81.14  E-value=0.33  Score=43.97  Aligned_cols=24  Identities=33%  Similarity=0.374  Sum_probs=20.7

Q ss_pred             eEEEEecCCCChhHHHHHHHHhHH
Q 037205          138 YALGIWGIGGIGKTTIARATFDKI  161 (439)
Q Consensus       138 ~vi~I~G~gGiGKTtLA~~v~~~~  161 (439)
                      -.|.|=|.=|+||||+++.+.+.+
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            347888999999999999988764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=81.10  E-value=0.2  Score=42.93  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=17.5

Q ss_pred             EEEEecCCCChhHHHHHHHHhH
Q 037205          139 ALGIWGIGGIGKTTIARATFDK  160 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~~  160 (439)
                      ...+.|.+|+|||||...+..+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            3458899999999999887654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=81.02  E-value=0.17  Score=41.34  Aligned_cols=21  Identities=29%  Similarity=0.282  Sum_probs=17.8

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      +..|+|+.|+||||+..++.-
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999998763

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=80.33  E-value=0.41  Score=42.53  Aligned_cols=21  Identities=38%  Similarity=0.550  Sum_probs=18.6

Q ss_pred             EEEEecCCCChhHHHHHHHHh
Q 037205          139 ALGIWGIGGIGKTTIARATFD  159 (439)
Q Consensus       139 vi~I~G~gGiGKTtLA~~v~~  159 (439)
                      -|||+|.|.+|||||-.++-+
T Consensus        12 kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            499999999999999887664

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=80.28  E-value=0.45  Score=42.31  Aligned_cols=21  Identities=0%  Similarity=0.159  Sum_probs=16.8

Q ss_pred             CeEEecHHHHHHHHHHHhhhc
Q 037205          373 NKITMHDLLQELGRDIVSQES  393 (439)
Q Consensus       373 ~~~~mHdlv~~~a~~i~~~e~  393 (439)
                      ..|+.|.-|.++|..+.+...
T Consensus       284 ~nyRs~~~I~~~an~ll~~~~  304 (318)
T d1pjra1         284 QNYRSTKRILQAANEVIEHNV  304 (318)
T ss_dssp             BCSSSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCcHHHHHHHHHHHHcCc
Confidence            448889999999999887653