Citrus Sinensis ID: 037216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MTPFSRDRHVISILARSQSQHQCMMIYYLSPMIIHLSVYKRNSPAPDYSSLFHSFSPLSSSSSLTPPPYDLFTYNNTQHSHHRSLSSMENLKPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTVTTVSSADSRRVSSRRVSPDNPAFSVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATETDVMKAIHASSGGGSDSFRLEIGSISRRQAGNEPPGEPQRRSYSLGSFDYVVDEESDITTSQIHRGSMSDKEEVGAQAASEANLASEVAAGRSWLKDYVDRLSFSVSSRAMSFRSSGRFFTGSSRQSDVGDYDMETNRVGEEISEFFRWFSGV
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHcccccccEEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHccccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEccccccEEEEcccccccccHHHHcHHcccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHccccccHHEEEcccEEEEEccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHcccccccHHHHHHccEEEEcHccccccccccEEEEEccccccccEEEcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHEEccc
Coil and Loop (DISEMBL)
mtpfsrdrHVISILARSQSQHQCMMIYYLSPMIIHLSvykrnspapdysslfhsfsplsssssltpppydlftynntqhshhrslssmenlkPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLStvttvssadsrrvssrrvspdnpafsvmdslplfafssvsrrsssggdcaiclfkfephdqlrllplcCHAFHARCIDTWlesnltcplcrspiiatETDVMKAIhassgggsdsfrLEIGSisrrqagneppgepqrrsyslgsfdyvvdeesdittsqihrgsmsdkeeVGAQAASEANLASEVAAGRSWLKDYVDRLSFSVSSRAmsfrssgrfftgssrqsdvgdydmetnRVGEEISEFFRWFSGV
Flexible Loop (DISEMBL)
MTPFSRDRHVISILARSQSQHQCMMIYYLSPMIIHLSVYKRNSPAPDYSSLFHSFSPLSSSSSLTPPPYDLFTYNNTQHSHHRSLSSMENLKPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLstvttvssadsrrvssrrvspdnpafsvmdsLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATETDVMKAIHassgggsdsfRLEIGSIsrrqagneppgepqrrsySLGSFDYVVDEESDITTSQIHRGSMSDKEEVGAQAASEANLASEVAAGRSWLKDYVDRLSFSVSsramsfrssgrfftgssrqsdvgdyDMETNRVGEEISEFFRWFSGV
Low Complexity Region (SEG)
MTPFSRDRHVISILARSQSQHQCMMIYYLSPMIIHLSVYKRNSPAPDYsslfhsfsplsssssltpppYDLFTYNNTQHSHHRSLSSMENLKPSliiiililaiTVFLSISlclllrhlnrrclrhlstvttvssadsrrvssrrvsPDNPAFSVMDSLPLFAFssvsrrsssGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATETDVMKAIHASSGGGSDSFRLEIGSISRRQAGNEPPGEPQRRSYSLGSFDYVVDEESDITTSQIHRGSMSDKEEVGAQAASEANLASEVAAGRSWLKDYVDrlsfsvssramsfrssgrfftgssrqsDVGDYDMETNRVGEEISEFFRWFSGV
Disordered region (IsUnstruct)
*********VISILARSQSQHQCMMIYYLSPMIIHLSVYKR******************************F*******************KPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTVTT**************************LPLFAF*********GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATETDVMKAI******************************************Y***************************************AGRSWLKDYVDRLSFS*************************************ISEFFRWF***
Disordered Region (DISOPRED)
******DRHVISILARSQSQHQCMMIYYLSPMIIHLSVYKRNSPAPDYSSLF*****************************************SLIIIILILAITVFLSISLCLLLRHLNRR********************************VMDSLPLFAFSSV*****SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI*************************************************************************************************************************************************EISEFFRWFSGV
Disordered Region (DISEMBL)
********HVISILARSQSQHQCMMIYYLSPMIIHLSVYKRNSPAPDYSSLFHSFSPLSSSSSLTPPPYDLFTYNNT**********MENLKPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTV******************DNPAFSVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATETDVMKAIHASSGGGSDSFRLEIGSISR**************SYSLGSFDYVVDEES****************************ASEVAAGRSWLKDYVDRLSFSVSSRAMSFRSSGRFFTGSSRQSDVGDYDMETNRVGEEISEFFRWFSGV
Disordered Region (DISPRO)
*******RHVISILARSQSQHQCMMIYYLSPMIIHLSVYKRNSPAPDYSSLFHSFSPLSSS***TP**********************ENLKPSLIIIILILAITVFLSISLCLLLRHLNRRC*************************DNPAFSVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA*********************************************SL*******DEESDI************************************LKD*VDRLSFSVSSRA*S*****************************E*SE****FSG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPFSRDRHVISILARSQSQHQCMMIYYLSPMIIHLSVYKRNSPAPDYSSLFHSFSPLSSSSSLTPPPYDLFTYNNTQHSHHRSLSSMENLKPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTVTTVSSADSRRVSSRRVSPDNPAFSVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATETDVMKAIHASSGGGSDSFRLEIGSISRRQAGNEPPGEPQRRSYSLGSFDYVVDEESDITTSQIHRGSMSDKEEVGAQAASEANLASEVAAGRSWLKDYVDRLSFSVSSRAMSFRSSGRFFTGSSRQSDVGDYDMETNRVGEEISEFFRWFSGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
Q9LY41	334	E3 ubiquitin-protein liga	yes	no	0.759	0.862	0.570	3e-80
Q9FL07	376	RING-H2 finger protein AT	no	no	0.633	0.638	0.274	5e-19
Q5XF85	432	E3 ubiquitin-protein liga	no	no	0.422	0.370	0.351	6e-19
Q8W571	323	RING-H2 finger protein AT	no	no	0.379	0.445	0.369	2e-18
O64763	378	E3 ubiquitin-protein liga	no	no	0.348	0.349	0.328	3e-18
Q84W40	404	RING-H2 finger protein AT	no	no	0.538	0.504	0.286	1e-17
Q9SK92	381	E3 ubiquitin-protein liga	no	no	0.321	0.320	0.351	2e-17
Q9FIR0	289	RING-H2 finger protein AT	no	no	0.332	0.435	0.391	3e-17
Q5EAE9	407	RING-H2 finger protein AT	no	no	0.266	0.248	0.403	3e-17
Q9ZV53	423	Putative RING-H2 finger p	no	no	0.187	0.167	0.535	5e-17

>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4 PE=1 SV=1

 Score =  298 bits (764), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 177/310 (57%), Positives = 223/310 (71%), Gaps = 22/310 (7%)

Query: 92  KPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTVTTVSSA-----DSRRVSSRRV 146
           KPS+++IILIL +T+ +S+S+C LLR LNR   R +  +++ SS      DSRR S  RV
Sbjct: 25  KPSVLVIILILLMTLLISVSICFLLRCLNRCSHRSVLPLSSSSSVATVTSDSRRFSGHRV 84

Query: 147 SPDNPAFSVMDSLPLFAFSSVSRRSSS--GGDCAICLFKFEPHDQLRLLPLCCHAFHARC 204
           SP+    SV+DSLP+F FSSV+RRSSS   GDCA+CL KFEP DQLRLLPLCCHAFHA C
Sbjct: 85  SPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADC 144

Query: 205 IDTWLESNLTCPLCRSPIIATETDVMKA---IHASSGGGSDSFRLEIGSISRRQAGNEPP 261
           ID WL SN TCPLCRSP+ A+E+D+MK+   + +++GGG +SFRLEIGSISRR+    P 
Sbjct: 145 IDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEIGSISRRRQTPIPE 204

Query: 262 GEPQRRSYSLGSFDYVVDE-ESDITTSQIHRGSMSDKEEVGAQAAS--------EANLAS 312
              Q R+YS+GSFDY+VD+ +S+I+ S  +RG   D     A A +        EA+LA+
Sbjct: 205 SVEQHRTYSIGSFDYIVDDVDSEISESNFNRGKQEDATTTTATATAVTTNPTSFEASLAA 264

Query: 313 EVA--AGRSWLKDYVDRLSFSVSSRAMSFRSSGRFFTGSSRQS-DVGDYDMETNRVGEEI 369
           ++     RSWLKDYVDRLS  +SSRAMSFRSSGRFFTGSSR+S ++   D+E N  GEEI
Sbjct: 265 DIGNDGSRSWLKDYVDRLSRGISSRAMSFRSSGRFFTGSSRRSEELTVMDLEANHAGEEI 324

Query: 370 SEFFRWFSGV 379
           SE FRW SGV
Sbjct: 325 SELFRWLSGV 334

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 141/313 (45%), Gaps = 73/313 (23%)

Query: 91  LKPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTVTT--------VSSADSRRVS 142
           + P+++ +I+ILA+  F+S  L LL+R L    ++H S   +        +S++D+ +  
Sbjct: 41  ISPAVLFVIVILAVLFFISGLLHLLVRFL----IKHPSATASSRSNRFPEISTSDALQRQ 96

Query: 143 SRRVSPDNPAF---SVMDSLPLFAFSSVSRRSSSGG---------DCAICLFKFEPHDQL 190
            +++   N +    + +D+LP+F +  +   +  GG         DCA+CL +F   D+L
Sbjct: 97  LQQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKL 156

Query: 191 RLLPLCCHAFHARCIDTWLESNLTCPLCR----SPIIATET------DVMKAIHASSGGG 240
           RLLP+C HAFH  CIDTWL+SN TCPLCR    SP  + E       D+ +     +  G
Sbjct: 157 RLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFSPGFSMENPMFDFDDIREDEEGVTENG 216

Query: 241 SDSFRLEIGSI------------SRRQAGNEPPGEPQ---------------RRSYSLGS 273
           S    +EI  I              ++  N   G+ Q               RR +S+GS
Sbjct: 217 SQK-TMEIQEIVVEKGVLPVRLGKFKRLDNVGNGQGQDVVAGGETSSSNLDARRCFSMGS 275

Query: 274 FDYVVDE---ESDITTSQIHRGSMSDK--EEVGAQAASEANLASEVAAGRS------WLK 322
           + Y++     +      ++ R    DK  E+ G  ++ +    + VA G S      WL 
Sbjct: 276 YQYILGNSELKVPFANDRLPRLKPQDKESEQTGNSSSEDNKKINTVAKGESFSVSKIWLW 335

Query: 323 DYVDRLSFSVSSR 335
              D+ S     R
Sbjct: 336 PKKDKFSSDAQRR 348

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 93/185 (50%), Gaps = 25/185 (13%)

Query: 51  LFHSFSPL--SSSSSLTPPPYDLFTYNNTQHSHHRSLSSMENLKPSLIIIILILAITVFL 108
           +F  F PL  S +S+ TPPP+             R+   + N +PSL ++  +LAI   L
Sbjct: 4   IFFFFLPLLHSYASAQTPPPF-------------RNGDLVANFEPSLAVVTGVLAIMFAL 50

Query: 109 SISLCLLLR--HLNRRCLRHLSTVTTVSSADSRRVSSRRVSPDNPAFSVMD-----SLPL 161
           +  L +  +  H++ R                + +   R +  +  FS +D     SLPL
Sbjct: 51  TFVLLVYAKCCHIDLRS--GSGDRRRHDRRLRQGIFFNRSTASSDRFSGLDKTAIESLPL 108

Query: 162 FAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSP 221
           F FS++ + S  G DC++CL KFE  + LRLLP C HAFH  CID WLE + TCPLCR  
Sbjct: 109 FRFSAL-KGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDR 167

Query: 222 IIATE 226
           +   E
Sbjct: 168 VSMEE 172

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 89/168 (52%), Gaps = 24/168 (14%)

Query: 59  SSSSSLTPPPYDLFTYNNTQHSHHRSLSSMENLKPSLIIIILILAITVFLSISLCLLLRH 118
           +++ S +P P DL     T H+            PS   +  +L    FL+  L + +RH
Sbjct: 26  ANAQSFSPSPPDL----QTGHT------------PSKTTVFAVLVTLFFLTGLLSVYIRH 69

Query: 119 LNRRCLRHLSTVTTVSSADSRRVSSRRVSPDNPAFSVMDSLPLFAFSSV--SRRSSSGGD 176
             R    +  + T      +   SSRR   DN   +V++S P+FA+SSV  S+  S   +
Sbjct: 70  CARS---NPDSSTRYFRNRANDGSSRRGGLDN---AVVESFPVFAYSSVKESKIGSKDLE 123

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224
           CAICL + E H+ +RLLP+C H FH  CIDTWL S+ TCP+CRS + A
Sbjct: 124 CAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTA 171

Arabidopsis thaliana (taxid: 3702)

>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 2/134 (1%)

Query: 95  LIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTVTTVSSADSRRVSSRRVSPDNPAFS 154
           ++++I +L + +F  +   +  R  N +  R     +T + A+S+ V  RR++       
Sbjct: 51  VVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAE 110

Query: 155 VMDSLPLFAFSSVS--RRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN 212
            +++ P F +S V   R    G +CA+CL +FE  + LRL+P CCH FHA C+D WL  +
Sbjct: 111 AIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEH 170

Query: 213 LTCPLCRSPIIATE 226
            TCPLCR+ ++  +
Sbjct: 171 STCPLCRADLVLNQ 184

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 26/230 (11%)

Query: 72  FTYNNTQHSHHRSLSSMEN--LKPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLST 129
           F +   Q +H  S  S ++    P++ I++++L    F      + +R    RCL  +  
Sbjct: 38  FKFVAGQATHGGSDVSGDSSRFDPTMAILMIVLVSVFFFLGFFSVYIR----RCLERVMG 93

Query: 130 VTTVSSADSRR-VSSRRVSPDNPAFSVMDSLPLFAFSSVS--RRSSSGGDCAICLFKFEP 186
           +   +  D+   +++ R        S++++ P F +S+V   R      +C++CL +FE 
Sbjct: 94  MDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFED 153

Query: 187 HDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATETDVMKAIHASSGGGSDSFRL 246
            + LRL+P CCH FH  CID WL S+ TCPLCR+ +I    + + +I             
Sbjct: 154 DETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGESIVSI------------- 200

Query: 247 EIGSISRRQAGNEPPGEPQRRSYSLGSFDYVVDEESDITTSQ-IHRGSMS 295
           +I  +     G++P G+   R  SLGS D  + E   +T +Q + R SMS
Sbjct: 201 QIPGLVNDPPGSDPNGD---RIRSLGSPDARLIESVALTCNQSMPRRSMS 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 73/128 (57%), Gaps = 6/128 (4%)

Query: 98  IILILAITVFLSISLCLLLRHLNRRCLRHLSTVTTVSSADSRRVSSRRVSPDNPAFSVMD 157
           II+I+ ++VF ++  C+ +    RRCL+H   + +        ++ R+ +      SV++
Sbjct: 41  IIMIVLVSVFFALG-CISVYM--RRCLQHALGMDS-GGGPGNWLNVRQTTEPGLDASVIE 96

Query: 158 SLPLFAFSSVS--RRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTC 215
           + P F +S+V   R      +C +CL +FE  + LRL+P CCH FH  CID WL S  TC
Sbjct: 97  TFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTC 156

Query: 216 PLCRSPII 223
           PLCR+ ++
Sbjct: 157 PLCRANLV 164

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 70/138 (50%), Gaps = 12/138 (8%)

Query: 92  KPSLIIIILILAITVFL----SISLCLLLRH-LNRRCLRHLSTVTTVSSADSRRVSSRRV 146
           KP L+II+ ++ + VF     +I  C    H L      H       +   +++   +  
Sbjct: 22  KPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYHNGLPENQIQAQQEPVQ-- 79

Query: 147 SPDNPAFS--VMDSLPLFAFSSVS--RRSSSGGDCAICLFKFEP-HDQLRLLPLCCHAFH 201
            P NP     ++ S PLF FSSV   R    G +CAICL +FE  H  LRLL  C H FH
Sbjct: 80  PPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFH 139

Query: 202 ARCIDTWLESNLTCPLCR 219
             CID WLESN TCP+CR
Sbjct: 140 QECIDQWLESNKTCPVCR 157

Arabidopsis thaliana (taxid: 3702)

>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2 SV=2

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 63/109 (57%), Gaps = 8/109 (7%)

Query: 154 SVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL 213
           SV++SLP+F F ++S     G +CA+CL +FEP + LRLLP C HAFH  C+DTWL+++ 
Sbjct: 124 SVIESLPVFRFGALSGHKD-GLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHS 182

Query: 214 TCPLCRSPIIATETDVMKAIHASSGGGSDSFRLEIGSISRRQAGNEPPG 262
           TCPLCR  +   +  ++       G  +  F L+          N PPG
Sbjct: 183 TCPLCRYRVDPEDILLI-------GDCNSWFELQFSKDESNSVNNNPPG 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana GN=ATL49 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 51/71 (71%)

Query: 154 SVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL 213
           S++D+LP+F + S+     S  DC +CL +FE  D+LRLLP C HAFH  CIDTWL S+ 
Sbjct: 103 SLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHS 162

Query: 214 TCPLCRSPIIA 224
           TCPLCRS +++
Sbjct: 163 TCPLCRSNLLS 173

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
449433159	339	PREDICTED: E3 ubiquitin-protein ligase A	0.770	0.861	0.585	3e-89
359489228	342	PREDICTED: E3 ubiquitin-protein ligase A	0.828	0.918	0.583	7e-84
255571093	354	ring finger protein, putative [Ricinus c	0.741	0.793	0.624	8e-81
15232280	334	E3 ubiquitin-protein ligase ATL4 [Arabid	0.759	0.862	0.570	2e-78
357513019	316	RING finger protein [Medicago truncatula	0.778	0.933	0.523	7e-78
4928399	326	RING-H2 zinc finger protein ATL4 [Arabid	0.759	0.883	0.567	1e-77
356522954	359	PREDICTED: E3 ubiquitin-protein ligase A	0.807	0.852	0.505	6e-76
3790591	273	RING-H2 finger protein RHX1a, partial [A	0.641	0.890	0.6	2e-75
297820882	334	hypothetical protein ARALYDRAFT_486491 [	0.749	0.850	0.560	4e-70
356504511	359	PREDICTED: E3 ubiquitin-protein ligase A	0.807	0.852	0.531	3e-68

>gi|449433159|ref|XP_004134365.1| PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis sativus] gi|449487638|ref|XP_004157726.1| PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis sativus]

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 181/309 (58%), Positives = 234/309 (75%), Gaps = 17/309 (5%)

Query: 86  SSMENLKPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTVTTVSSADSRRV---- 141
           +S++NL PS++II+ ILA T F S  LCL+LR+LNRRCL  LS ++  SS+ +       
Sbjct: 33  TSLKNLSPSILIILTILAFTAFSSGILCLVLRYLNRRCLLRLSALSGSSSSSTVSSRRII 92

Query: 142 -SSRRVSPDNPAFSVMDSLPLFAFSSVSRRSSSGG-DCAICLFKFEPHDQLRLLPLCCHA 199
            + +       +FS ++SLPLF+FSSV+RRSS+   DCA+CL KFE  DQLRLLPLCCHA
Sbjct: 93  PAEQSAVRCTNSFSPIESLPLFSFSSVTRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHA 152

Query: 200 FHARCIDTWLESNLTCPLCRSPIIATETDVMK---AIHASSGGGSDSFRLEIGSISRRQA 256
           FHA+C+DTWL+SN +CPLCRS I A+E+DVMK   A +A+ G G DSFRLEIGSISRRQA
Sbjct: 153 FHAQCVDTWLQSNQSCPLCRSAIFASESDVMKASMASYAAEGRGGDSFRLEIGSISRRQA 212

Query: 257 GNEPPGEPQRRSYSLGSFDYVVDEESDITTSQIHRGSMSDKEEVGA---QAASEANLASE 313
            ++      RRSYS+GSF+Y V+E+S++  +  HR S+SDKE++ A     ++E +LA+E
Sbjct: 213 PSDSA--EGRRSYSIGSFEYFVEEDSEVNFTNAHRRSVSDKEDIEAPISAVSTERSLAAE 270

Query: 314 VAAGRSWLKDYVDRLSFSVSSRAMSFRSSGRFFTGSSRQSDV---GDYDMETNRVGEEIS 370
           V +GR+WLKDYVDRLS SVSSRA+SFR SGRFFTGSSR+S+V   G+++ E NRVGEEIS
Sbjct: 271 VGSGRNWLKDYVDRLSNSVSSRALSFRGSGRFFTGSSRRSEVTVAGEWEQENNRVGEEIS 330

Query: 371 EFFRWFSGV 379
           E FRWFSGV
Sbjct: 331 ELFRWFSGV 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489228|ref|XP_002269069.2| PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Vitis vinifera]

 Score =  317 bits (812), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 202/346 (58%), Positives = 247/346 (71%), Gaps = 32/346 (9%)

Query: 61  SSSLTPPPY---DLFTYNNTQHSHHRSLSSMENLKPSLII-IILILAITVFLSISLCLLL 116
           + +L+PPP     +F        +  S SS E    S II +IL+L+   F+SI L LLL
Sbjct: 2   TDALSPPPAWFPGIFPDEGVTRENSSSSSSKEGFSTSSIITVILVLSSAFFVSIILYLLL 61

Query: 117 RHLNRRCLRHL-STVTTVSSADS-RRVSSRRVSPDNPAFSVMDSLPLFAFSSV-SRRSSS 173
           R+L+RRC   L S    +   DS RR SSRRVSP++   S++DSLPLF F SV  R SSS
Sbjct: 62  RYLSRRCSERLHSDDVVLPPVDSDRRFSSRRVSPED--LSLIDSLPLFTFGSVRGRNSSS 119

Query: 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATETDVMKAI 233
            GDCA+CL KFEPHDQLRLLP+CCHAFHARCIDTWL SN TCPLCRSPI ATE D MKAI
Sbjct: 120 EGDCAVCLSKFEPHDQLRLLPICCHAFHARCIDTWLASNQTCPLCRSPIFATEADFMKAI 179

Query: 234 HASSGGGSDSFRLEIGSISRRQAGNEPPGEPQRRSYSLGSFDYVVDEESDITTSQIHR-- 291
            AS+  G DSFR+E+GS+SRR++ +E  GE  RRSYS+GSFDY+VD ES++T +  HR  
Sbjct: 180 LASTNAG-DSFRIELGSVSRRRSASE-SGE-ARRSYSVGSFDYIVDHESEVTVASTHRRG 236

Query: 292 GSMS-----DKEEVGAQAASEA------NLASEVAAGRSWLKDYVDRL----SFSVSSRA 336
           GS S     DK++ GAQ+   A      + A+EVA+GRSWLKDYVDRL    S S+SSRA
Sbjct: 237 GSESSAAEKDKDDAGAQSNQLAPEPPGPSTAAEVASGRSWLKDYVDRLSSTASLSISSRA 296

Query: 337 MSFRSSGRFFTGSSRQSD---VGDYDMETNRVGEEISEFFRWFSGV 379
           +SFRSSGRFFTGSSR+++   VG++D+E NRVGEEISE FRWFSG+
Sbjct: 297 LSFRSSGRFFTGSSRRNETASVGEWDLEANRVGEEISEMFRWFSGI 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571093|ref|XP_002526497.1| ring finger protein, putative [Ricinus communis] gi|223534172|gb|EEF35888.1| ring finger protein, putative [Ricinus communis]

 Score =  306 bits (785), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 188/301 (62%), Positives = 228/301 (75%), Gaps = 20/301 (6%)

Query: 86  SSMENLKPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTVTTVSSADSRR---VS 142
           S  + LKPS+++I+LIL+IT  LSISLCLLLRHLNRRCLRHLS      S         +
Sbjct: 24  SPFQTLKPSILVILLILSITFLLSISLCLLLRHLNRRCLRHLSPSPPSPSPAPAPPTITA 83

Query: 143 SRRVSPDNPAFSVMDSLPLFAFSSVSRRS-SSGGDCAICLFKFEPHDQLRLLPLCCHAFH 201
           S RVSP++PAFS++DSLPLF FSS+ RRS SS GDCA+CL KFEP DQLRLLPLCCHAFH
Sbjct: 84  SNRVSPESPAFSIIDSLPLFTFSSIKRRSTSSSGDCAVCLSKFEPQDQLRLLPLCCHAFH 143

Query: 202 ARCIDTWLESNLTCPLCRSPIIATETDVMKAIHASSGGGSDSFRLEIGSISRRQAGNEPP 261
             CIDTWL SN TCPLCRSPI A+++D++K++ +      +SFRLEIGSISRRQ  +EP 
Sbjct: 144 IHCIDTWLHSNQTCPLCRSPIHASDSDLLKSL-SPDAAPPESFRLEIGSISRRQTASEP- 201

Query: 262 GEPQRRSYSLGSFDYVVDEESDITTSQIHRGSMSDKEEVGAQAASEANLASEV-AAGRSW 320
               R SYS+GSF+YVVDE+S++T SQ HR S+SDKE  G  +  ++NLAS+V   GRSW
Sbjct: 202 ----RSSYSVGSFEYVVDEDSEVTMSQTHRRSVSDKEG-GTHSRQDSNLASQVSGGGRSW 256

Query: 321 LKDYVDRLSFSVSSRAMSFRSSGRFFTGSSRQSDV---GDYDMETNRVGEEISEFFRWFS 377
           LKDYVD       S ++SFRSSGR FTGSSR+S++   GDYD+E NRVGEEI+E FRWFS
Sbjct: 257 LKDYVD-----RLSSSLSFRSSGRLFTGSSRRSEIGSLGDYDVEANRVGEEITEMFRWFS 311

Query: 378 G 378
           G
Sbjct: 312 G 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232280|ref|NP_191581.1| E3 ubiquitin-protein ligase ATL4 [Arabidopsis thaliana] gi|68565314|sp|Q9LY41.1|ATL4_ARATH RecName: Full=E3 ubiquitin-protein ligase ATL4; AltName: Full=Protein ARABIDOPSIS TOXICOS EN LEVADURA 4; Short=Protein ATL4; AltName: Full=RING-H2 finger protein ATL4; AltName: Full=RING-H2 finger protein RHX1a gi|7576198|emb|CAB87859.1| RING-H2 zinc finger protein ATL4 [Arabidopsis thaliana] gi|66865934|gb|AAY57601.1| RING finger family protein [Arabidopsis thaliana] gi|114050661|gb|ABI49480.1| At3g60220 [Arabidopsis thaliana] gi|332646504|gb|AEE80025.1| E3 ubiquitin-protein ligase ATL4 [Arabidopsis thaliana]

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 177/310 (57%), Positives = 223/310 (71%), Gaps = 22/310 (7%)

Query: 92  KPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTVTTVSSA-----DSRRVSSRRV 146
           KPS+++IILIL +T+ +S+S+C LLR LNR   R +  +++ SS      DSRR S  RV
Sbjct: 25  KPSVLVIILILLMTLLISVSICFLLRCLNRCSHRSVLPLSSSSSVATVTSDSRRFSGHRV 84

Query: 147 SPDNPAFSVMDSLPLFAFSSVSRRSSS--GGDCAICLFKFEPHDQLRLLPLCCHAFHARC 204
           SP+    SV+DSLP+F FSSV+RRSSS   GDCA+CL KFEP DQLRLLPLCCHAFHA C
Sbjct: 85  SPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADC 144

Query: 205 IDTWLESNLTCPLCRSPIIATETDVMKA---IHASSGGGSDSFRLEIGSISRRQAGNEPP 261
           ID WL SN TCPLCRSP+ A+E+D+MK+   + +++GGG +SFRLEIGSISRR+    P 
Sbjct: 145 IDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEIGSISRRRQTPIPE 204

Query: 262 GEPQRRSYSLGSFDYVVDE-ESDITTSQIHRGSMSDKEEVGAQAAS--------EANLAS 312
              Q R+YS+GSFDY+VD+ +S+I+ S  +RG   D     A A +        EA+LA+
Sbjct: 205 SVEQHRTYSIGSFDYIVDDVDSEISESNFNRGKQEDATTTTATATAVTTNPTSFEASLAA 264

Query: 313 EVA--AGRSWLKDYVDRLSFSVSSRAMSFRSSGRFFTGSSRQS-DVGDYDMETNRVGEEI 369
           ++     RSWLKDYVDRLS  +SSRAMSFRSSGRFFTGSSR+S ++   D+E N  GEEI
Sbjct: 265 DIGNDGSRSWLKDYVDRLSRGISSRAMSFRSSGRFFTGSSRRSEELTVMDLEANHAGEEI 324

Query: 370 SEFFRWFSGV 379
           SE FRW SGV
Sbjct: 325 SELFRWLSGV 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513019|ref|XP_003626798.1| RING finger protein [Medicago truncatula] gi|355520820|gb|AET01274.1| RING finger protein [Medicago truncatula]

 Score =  297 bits (760), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 167/319 (52%), Positives = 216/319 (67%), Gaps = 24/319 (7%)

Query: 77  TQHSHHRSLSSMENLKPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTVTTVSSA 136
           T  S HRS S ++N+ PS++III ILA+TV +S+ +C LLRHLN  C R     +  ++ 
Sbjct: 6   TPPSPHRS-SPLQNISPSILIIITILAVTVIVSLLICFLLRHLN--CHRLRRNPSPTTTE 62

Query: 137 DSRRVSSRRVSPDNPAFSVMDSLPLFAFSSVSRRSS--SGGDCAICLFKFEPHDQLRLLP 194
                 SRR+SP+    SV+DSLPLF FSS+SRRSS  +  DCA+CL KF   D LR LP
Sbjct: 63  PPPHTHSRRISPETTPPSVIDSLPLFTFSSISRRSSAVTAADCAVCLSKFRNSDLLRSLP 122

Query: 195 LCCHAFHARCIDTWLESNLTCPLCRSPIIATETDVMKAIHASSGGGSDSFRLEIGSISRR 254
           LCCHAFHA CIDTWL SNL+CPLCR+ I+ +++D+ K + ++S   SDSFR++IG+ISRR
Sbjct: 123 LCCHAFHAECIDTWLRSNLSCPLCRASILPSDSDLAKILRSTS---SDSFRVDIGNISRR 179

Query: 255 QAGNEPPGEP------QRRSYSLGSFDYVVDEESDITTSQIHRGSMSDKEEV------GA 302
             GN  P           RSYS+GSF+Y V E S+++ +Q HR S+SD++++       +
Sbjct: 180 --GNNLPNPDAVTTGGDSRSYSIGSFEYYVVEPSEVSFTQDHRRSVSDQKDIHIPVSEDS 237

Query: 303 QAASEANLASEVAAGRSWLKDYVDRLSFSVSSRAMSFRSSGRFFT--GSSRQSDVGDYDM 360
               E  +A EVA    WLKDYVDRLS S+SSR  SFRSSGRFF   GSSR+ +  DYD+
Sbjct: 238 SMTHENTIAGEVAGSGHWLKDYVDRLSASISSRTASFRSSGRFFAGGGSSRRIEPVDYDV 297

Query: 361 ETNRVGEEISEFFRWFSGV 379
           E NR+GEEISE FRW SGV
Sbjct: 298 EGNRIGEEISEMFRWLSGV 316

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4928399|gb|AAD33582.1|AF132014_1 RING-H2 zinc finger protein ATL4 [Arabidopsis thaliana]

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 176/310 (56%), Positives = 222/310 (71%), Gaps = 22/310 (7%)

Query: 92  KPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTVTTVSSA-----DSRRVSSRRV 146
           KPS+++IILIL +T+ +S+S+C LLR LNR   R +  +++ SS      DSRR S  RV
Sbjct: 17  KPSVLVIILILLMTLLISVSICFLLRCLNRCSHRSVLPLSSSSSVATVTSDSRRFSGHRV 76

Query: 147 SPDNPAFSVMDSLPLFAFSSVSRRSSS--GGDCAICLFKFEPHDQLRLLPLCCHAFHARC 204
           SP+    SV+DSLP+F FSSV+RRSSS   GDCA+CL KFE  DQLRLLPLCCHAFHA C
Sbjct: 77  SPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFESEDQLRLLPLCCHAFHADC 136

Query: 205 IDTWLESNLTCPLCRSPIIATETDVMKA---IHASSGGGSDSFRLEIGSISRRQAGNEPP 261
           ID WL SN TCPLCRSP+ A+E+D+MK+   + +++GGG +SFRLEIGSISRR+    P 
Sbjct: 137 IDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEIGSISRRRQTPIPE 196

Query: 262 GEPQRRSYSLGSFDYVVDE-ESDITTSQIHRGSMSDKEEVGAQAAS--------EANLAS 312
              Q R+YS+GSFDY+VD+ +S+I+ S  +RG   D     A A +        EA+LA+
Sbjct: 197 SVEQHRTYSIGSFDYIVDDVDSEISESNFNRGKQEDATTTTATATAVTTNPTSFEASLAA 256

Query: 313 EVA--AGRSWLKDYVDRLSFSVSSRAMSFRSSGRFFTGSSRQS-DVGDYDMETNRVGEEI 369
           ++     RSWLKDYVDRLS  +SSRAMSFRSSGRFFTGSSR+S ++   D+E N  GEEI
Sbjct: 257 DIGNDGSRSWLKDYVDRLSRGISSRAMSFRSSGRFFTGSSRRSEELTVMDLEANHAGEEI 316

Query: 370 SEFFRWFSGV 379
           SE FRW SGV
Sbjct: 317 SELFRWLSGV 326

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522954|ref|XP_003530107.1| PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Glycine max]

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 175/346 (50%), Positives = 228/346 (65%), Gaps = 40/346 (11%)

Query: 61  SSSLTPPPYDLFTYNNTQHSHHRSLSSMENLKPSLIIIILILAITVFLSISLCLLLRHLN 120
           +SSLTPP            S  RS S ++NL PS++II+ +LA+TV +S++LC LLRHLN
Sbjct: 27  TSSLTPP------------SPRRS-SPLQNLSPSILIIVTVLAVTVIVSLALCFLLRHLN 73

Query: 121 RRCLRHLSTVTTVSSADSRRV--SSRRVSPD------NPAFSVMDSLPLFAFSSVSRRSS 172
           RRCLR  S+ +   SA +  +  SSRR+SP+      + + SV+D+LPLF FSSV+RRS+
Sbjct: 74  RRCLRRFSSSSAAPSAAATPIFASSRRISPEILHSSASASASVIDTLPLFTFSSVTRRSA 133

Query: 173 S-GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATETDVMK 231
           +  GDCA+CL KF  HD LRLLPLCCHAFHA CIDTWL+SNL+CPLCRS I+A ++D+ K
Sbjct: 134 AVSGDCAVCLSKFHHHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSTIVADDSDLAK 193

Query: 232 AIH-ASSGGGSDSFRLEIGSISRRQA-GNEPPGEPQR---RSYSLGSFDYVVDEESDITT 286
            +   SS G SDSFRLE+G+ISRR   G    G   R   RSYS+GSF+Y++D+ES++  
Sbjct: 194 ILRPPSSAGSSDSFRLELGNISRRGTDGAAEGGSVARGGSRSYSIGSFEYLIDDESEVPF 253

Query: 287 SQIHRGSMSDKEEVGAQAAS-----EANLASEVAAGRSWLKDYVDRLSFSVSSRA---MS 338
           S   R S+ D +E  A A +     EA+LA EV   RSWLK+Y+DR+S S+SSR      
Sbjct: 254 SHARRRSVDDAKEFPAPAEAPVSHNEASLAGEVGGVRSWLKEYMDRVSVSISSRTASFRG 313

Query: 339 FRSSGRFFTGSSRQSDV-----GDYDMETNRVGEEISEFFRWFSGV 379
                     S R+SD+      +YD E NR+GEEISE FRW SGV
Sbjct: 314 SGRFFSGGGSSDRRSDIVPVAAPEYDAEGNRIGEEISEMFRWLSGV 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3790591|gb|AAC69858.1| RING-H2 finger protein RHX1a, partial [Arabidopsis thaliana]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/260 (60%), Positives = 190/260 (73%), Gaps = 17/260 (6%)

Query: 137 DSRRVSSRRVSPDNPAFSVMDSLPLFAFSSVSRRSSS--GGDCAICLFKFEPHDQLRLLP 194
           DSRR S  RVSP+    SV+DSLP+F FSSV+RRSSS   GDCA+CL KFEP DQLRLLP
Sbjct: 14  DSRRFSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLP 73

Query: 195 LCCHAFHARCIDTWLESNLTCPLCRSPIIATETDVMKA---IHASSGGGSDSFRLEIGSI 251
           LCCHAFHA CID WL SN TCPLCRSP+ A+E+D+MK+   + +++GGG +SFRLEIGSI
Sbjct: 74  LCCHAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEIGSI 133

Query: 252 SRRQAGNEPPGEPQRRSYSLGSFDYVVDE-ESDITTSQIHRGSMSDKEEVGAQAAS---- 306
           SRR+    P    Q R+YS+GSFDY+VD+ +S+I+ S  +RG   D     A A +    
Sbjct: 134 SRRRQTPIPESVEQHRTYSIGSFDYIVDDVDSEISESNFNRGKQEDATTTTATATAVTTN 193

Query: 307 ----EANLASEVA--AGRSWLKDYVDRLSFSVSSRAMSFRSSGRFFTGSSRQS-DVGDYD 359
               EA+LA+++     RSWLKDYVDRLS  +SSRAMSFRSSGRFFTGSSR+S ++   D
Sbjct: 194 PTSFEASLAADIGNDGSRSWLKDYVDRLSRGISSRAMSFRSSGRFFTGSSRRSEELTVMD 253

Query: 360 METNRVGEEISEFFRWFSGV 379
           +E N  GEEISE FRW SGV
Sbjct: 254 LEANHAGEEISELFRWLSGV 273

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820882|ref|XP_002878324.1| hypothetical protein ARALYDRAFT_486491 [Arabidopsis lyrata subsp. lyrata] gi|297324162|gb|EFH54583.1| hypothetical protein ARALYDRAFT_486491 [Arabidopsis lyrata subsp. lyrata]

 Score =  271 bits (692), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 176/314 (56%), Positives = 225/314 (71%), Gaps = 30/314 (9%)

Query: 92  KPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTVTTVSSA------DSRRVSSRR 145
           KPS+++IILIL +T+ +S+S+C LLR LNR   R +   ++ S++      DSRR S  R
Sbjct: 25  KPSVLVIILILLMTLLISVSICFLLRCLNRFSHRSVIPPSSSSTSAATVTSDSRRFSGHR 84

Query: 146 VSPDNPAFSVMDSLPLFAFSSVSRRSS--SGGDCAICLFKFEPHDQLRLLPLCCHAFHAR 203
           VSP+    SV+DSLP+F FSSV+RRSS  + GDCA+CL KFEP +QLRLLPLCCHAFHA 
Sbjct: 85  VSPETERSSVLDSLPIFKFSSVTRRSSSTNSGDCAVCLSKFEPEEQLRLLPLCCHAFHAD 144

Query: 204 CIDTWLESNLTCPLCRSPIIATETDVMKAI---HASSGGGSDSFRLEIGSISRRQAGNEP 260
           CID WL SN TCPLCRSP+ A+E+D+MK++   + +S GG +SFRLEIGSISRRQ     
Sbjct: 145 CIDIWLVSNQTCPLCRSPLFASESDLMKSLVGGNNNSNGGENSFRLEIGSISRRQT---- 200

Query: 261 PGEPQRRSYSLGSFDYVVDE-ESDITTSQIHRGSMSDKEE-----------VGAQAASEA 308
               Q RSYS+GSFDY+VD+ +S+I+ S  +RGS+S K+E               A+ EA
Sbjct: 201 ESVEQHRSYSIGSFDYIVDDVDSEISESNFNRGSISAKQEDATTTTTATAVTSNPASFEA 260

Query: 309 NLASEVA--AGRSWLKDYVDRLSFSVSSRAMSFRSSGRFFTGSSRQS-DVGDYDMETNRV 365
           +LA+++     RSWLKDYVDRLS  +SSRAMSFRSSGRFFTGSSR++ ++   D+E N  
Sbjct: 261 SLAADIGNDGSRSWLKDYVDRLSRGISSRAMSFRSSGRFFTGSSRRTEELTVMDLEANHA 320

Query: 366 GEEISEFFRWFSGV 379
           GEEISE FRW SGV
Sbjct: 321 GEEISELFRWLSGV 334

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504511|ref|XP_003521039.1| PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Glycine max]

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 184/346 (53%), Positives = 231/346 (66%), Gaps = 40/346 (11%)

Query: 61  SSSLTPPPYDLFTYNNTQHSHHRSLSSMENLKPSLIIIILILAITVFLSISLCLLLRHLN 120
           +SSLTPP            S  RS S ++NL PS++II+ +LA+TV +S++LC LLRHLN
Sbjct: 27  TSSLTPP------------SPRRS-SPLQNLSPSILIIVTVLAVTVIVSLALCFLLRHLN 73

Query: 121 RRCLRHLSTVTTVSSADSRR-VSSRRVSPD------NPAFSVMDSLPLFAFSSVSRRSSS 173
           RRCLR  S+    S+A +    SSRR+SP+      + + SV+D+LP+F FSSV+RRSSS
Sbjct: 74  RRCLRRFSSSAPPSAAATPIFASSRRISPEILHSSASASASVIDTLPVFTFSSVTRRSSS 133

Query: 174 -GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATETDVMKA 232
             GDCA+CL KF  HD LRLLPLCCHAFHA CIDTWL+SNL+CPLCRS I+A ++D+ K 
Sbjct: 134 VAGDCAVCLSKFHHHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSAIVADDSDLAKI 193

Query: 233 IH-ASSGGGSDSFRLEIGSISRRQA-GNEPPGEPQR---RSYSLGSFDYVVDEESDITTS 287
           +   SSGG SDSFRLE+G+ISRR   G    G   R   RSYS+GSF+Y+VD+ES++  S
Sbjct: 194 LRPPSSGGSSDSFRLELGNISRRGTDGAAEGGSVARGGSRSYSIGSFEYLVDDESEVPFS 253

Query: 288 QIHRGSMSDKEEVGAQAAS-----EANLASEVAAGRSWLKDYVDRLSFSVSSRA----MS 338
              R S+ D +E  A A +     EANLA EV   RSWLKDYVDR+S S+SSR      S
Sbjct: 254 HASRRSVDDAKEFPAPAEAPVRHNEANLAGEVGGVRSWLKDYVDRVSASISSRTASFRGS 313

Query: 339 FRSSGRFFTGSSRQSDV-----GDYDMETNRVGEEISEFFRWFSGV 379
            R        S R+SDV      +YD+E NR+GEEISE FRW SGV
Sbjct: 314 GRFFSGGGGSSGRRSDVVPVAASEYDVEGNRIGEEISEMFRWLSGV 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2081907	334	ATL4 "TOXICOS EN LEVADURA 4" [	0.775	0.880	0.398	4.3e-54
TAIR|locus:2118666	472	AT4G30400 [Arabidopsis thalian	0.187	0.150	0.521	8.2e-22
TAIR|locus:2054049	423	MEE16 "maternal effect embryo	0.187	0.167	0.507	1.3e-20
TAIR|locus:2173772	376	AT5G40250 [Arabidopsis thalian	0.182	0.183	0.474	1.5e-18
TAIR|locus:2097890	349	AT3G48030 "AT3G48030" [Arabido	0.174	0.189	0.530	3.8e-17
TAIR|locus:2172550	210	AT5G57750 [Arabidopsis thalian	0.237	0.428	0.422	2.9e-16
TAIR|locus:2199902	369	AT1G23980 [Arabidopsis thalian	0.184	0.189	0.492	5.8e-16
TAIR|locus:2825708	197	AT1G20823 [Arabidopsis thalian	0.274	0.527	0.377	1.1e-14
TAIR|locus:2061698	390	AT2G20030 [Arabidopsis thalian	0.266	0.258	0.392	1.8e-14
TAIR|locus:2062008	227	AT2G47560 [Arabidopsis thalian	0.182	0.303	0.442	3e-14

TAIR|locus:2081907 ATL4 "TOXICOS EN LEVADURA 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 126/316 (39%), Positives = 163/316 (51%)

Query:    86 SSMENLKPSXXXXXXXXXXTVFLSISXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXX 140
             SS+++LKPS          T+ +S+S                                  
Sbjct:    19 SSLDSLKPSVLVIILILLMTLLISVSICFLLRCLNRCSHRSVLPLSSSSSVATVTSDSRR 78

Query:   141 XXXXXXXPDNPAFSVMDSLPLFAFXXXXXXXXX--GGDCAICLFKFEPHDQLRLLPLCCH 198
                    P+    SV+DSLP+F F            GDCA+CL KFEP DQLRLLPLCCH
Sbjct:    79 FSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCH 138

Query:   199 AFHARCIDTWLESNLTCPLCRSPIIATETDVMKA---IHASSGGGSDSFRLEIGSISRRQ 255
             AFHA CID WL SN TCPLCRSP+ A+E+D+MK+   + +++GGG +SFRLEIGSISRR+
Sbjct:   139 AFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEIGSISRRR 198

Query:   256 AGNEPPGEPQRRSYSLGSFDYVVDE-ESDITTSQIHRGSMSDKEEVGAQAAS-------- 306
                 P    Q R+YS+GSFDY+VD+ +S+I+ S  +RG   D     A A +        
Sbjct:   199 QTPIPESVEQHRTYSIGSFDYIVDDVDSEISESNFNRGKQEDATTTTATATAVTTNPTSF 258

Query:   307 EANLASEVA--AGRSWLKDYVDXXXXXXXXXXXXXXXXXXXXXXXXXXXD-VGDYDMETN 363
             EA+LA+++     RSWLKDYVD                           + +   D+E N
Sbjct:   259 EASLAADIGNDGSRSWLKDYVDRLSRGISSRAMSFRSSGRFFTGSSRRSEELTVMDLEAN 318

Query:   364 RVGEEISEFFRWFSGV 379
               GEEISE FRW SGV
Sbjct:   319 HAGEEISELFRWLSGV 334

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2118666 AT4G30400 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.2e-22, Sum P(2) = 8.2e-22
 Identities = 37/71 (52%), Positives = 48/71 (67%)

Query:   154 SVMDSLPLFAFXXXXXXXXXGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL 213
             S +D+LP+F +           DCA+CL +FE  D+LRLLP C HAFH  CIDTWL S+ 
Sbjct:   111 SFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHS 170

Query:   214 TCPLCRSPIIA 224
             TCPLCRS +++
Sbjct:   171 TCPLCRSSLLS 181

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2054049 MEE16 "maternal effect embryo arrest 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
 Identities = 36/71 (50%), Positives = 48/71 (67%)

Query:   154 SVMDSLPLFAFXXXXXXXXXGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL 213
             S++D+LP+F +           DC +CL +FE  D+LRLLP C HAFH  CIDTWL S+ 
Sbjct:   103 SLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHS 162

Query:   214 TCPLCRSPIIA 224
             TCPLCRS +++
Sbjct:   163 TCPLCRSNLLS 173

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2173772 AT5G40250 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
 Identities = 37/78 (47%), Positives = 48/78 (61%)

Query:   156 MDSLPLFAFXXXXXXXXXGG---------DCAICLFKFEPHDQLRLLPLCCHAFHARCID 206
             +D+LP+F +         GG         DCA+CL +F   D+LRLLP+C HAFH  CID
Sbjct:   113 IDALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCID 172

Query:   207 TWLESNLTCPLCRSPIIA 224
             TWL+SN TCPLCR  + +
Sbjct:   173 TWLQSNSTCPLCRGTLFS 190

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2097890 AT3G48030 "AT3G48030" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
 Identities = 35/66 (53%), Positives = 44/66 (66%)

Query:   154 SVMDSLPLFAFXXXXXXXXXGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL 213
             + +D+LP+F +           DCA+CL +F   D+LRLLP+C HAFH  CIDTWL SN 
Sbjct:   184 TAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNS 243

Query:   214 TCPLCR 219
             TCPLCR
Sbjct:   244 TCPLCR 249

GO:0001666 "response to hypoxia" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2172550 AT5G57750 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 41/97 (42%), Positives = 53/97 (54%)

Query:   154 SVMDSLPLFAFXXXXXXXXXGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL 213
             S +D+LPL  +           DCA+CL +F   D+LRLLP C HAFH  CIDTWL +N 
Sbjct:    99 SFIDALPLLHYKTMIGLRHDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNS 158

Query:   214 TCPLCRSPII------ATETDVMKAIHASSGGGS-DS 243
             TCPLCR  ++         +  +  +H S G  S DS
Sbjct:   159 TCPLCRDNLLLLGLTGTASSSTIVLVHESDGDNSQDS 195

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2199902 AT1G23980 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
 Identities = 35/71 (49%), Positives = 46/71 (64%)

Query:   154 SVMDSLPLFAFXXXXXXXXXGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL 213
             +++D+LP+F +           DCA+CL +F   D+LRLLP C HAFH  CIDTWL SN 
Sbjct:   122 ALIDALPVFLYKEIKGTKEPF-DCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNS 180

Query:   214 TCPLCRSPIIA 224
             TCPLCR  + +
Sbjct:   181 TCPLCRGTLFS 191

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2825708 AT1G20823 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 40/106 (37%), Positives = 54/106 (50%)

Query:   155 VMDSLPLFAFXXXXXXXXXGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLT 214
             V+ SLP   F           +CAICL +F   D+LR+LP C H FH  CIDTWL S+ +
Sbjct:    89 VLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSS 148

Query:   215 CPLCRSPIIATETDVMKAIHASSGGGSDSFRLEIGSISRRQAGNEP 260
             CP CR  ++         +  SS  G +S   EI  I  +Q  ++P
Sbjct:   149 CPSCRQILVVARCHKCGGLPGSSSSGLES-EPEI-EIRIKQGEDDP 192

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2061698 AT2G20030 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 44/112 (39%), Positives = 61/112 (54%)

Query:   156 MDSLPLFAFXXXXXXXXXGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTC 215
             ++SLP F F         G +C++CL KFE  + LRLLP C HAFH  CID WLE + TC
Sbjct:   104 IESLPFFRFSALKGLKQ-GLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATC 162

Query:   216 PLCRS--------PIIATETDVMKAIHASSGGGSDSFRLEIGSISRRQAGNE 259
             PLCR+         ++   +  ++ ++ S     DS RLEI  I R +  N+
Sbjct:   163 PLCRNRVNIEDDLSVLGNSSTSLRILNQSETREEDS-RLEI-YIEREEGTND 212

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2062008 AT2G47560 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 31/70 (44%), Positives = 44/70 (62%)

Query:   154 SVMDSLPLFAFXXXXXXX-XXGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN 212
             +V+D +P+F +            +C++CL +FE  D+ RLLP C H+FH  CIDTW  S 
Sbjct:    84 AVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSR 143

Query:   213 LTCPLCRSPI 222
              TCPLCR+P+
Sbjct:   144 STCPLCRAPV 153

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LY41	ATL4_ARATH	6, ., 3, ., 2, ., -	0.5709	0.7598	0.8622	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	3e-15
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	2e-11
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	4e-10
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	4e-09
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	8e-08
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	1e-07
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	2e-07
smart00184	40	smart00184, RING, Ring finger	2e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-06
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	3e-06
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	5e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	2e-05

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 69.0 bits (169), Expect = 3e-15
 Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSP 221
            +C ICL +FEP +++ +LP C H FH  C+D WL S+ TCPLCR+P
Sbjct: 1   DECPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPI 222
           +C ICL +F    +  +L  C H F   CID WL+S   TCPLCR+PI
Sbjct: 1   ECPICLEEF---REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 9/54 (16%)

Query: 175 GDCAICLFKFE--------PHDQLRLLPLCC-HAFHARCIDTWLESNLTCPLCR 219
             CAIC   F+        P D   ++   C HAFH  CI  WL++  TCPLCR
Sbjct: 20  DVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 169 RRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWL-ESNLTCPLCRSPI 222
             +  G +CAIC+  F  +D+LR+LP C H FH  C+D WL   +  CP+CR+ I
Sbjct: 318 VEADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 49.1 bits (117), Expect = 8e-08
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 170 RSSSGGDCAICLFKFEPHDQLRLL-PLCCHAFHARCIDTWLESNLTCPLCRSP 221
           R+   G C  C F   P D+  ++  +C HAFH  CI  WL++   CPL R  
Sbjct: 27  RNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQT 79

Length = 88

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 154  SVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLP-----LCCHAFHARCIDTW 208
            S MD L L+   ++  + S   +CAIC    +  D  R LP      C + FH RC+  W
Sbjct: 1450 SFMDLLGLWK-KNIDEKFSGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKW 1506

Query: 209  LES--NLTCPLCRSPI 222
              S     CPLCRS I
Sbjct: 1507 FASSARSNCPLCRSEI 1522

Length = 1525

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 8/60 (13%)

Query: 171 SSSGGDCAICLFKFEPHDQ------LRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224
            S   +CAIC+ K   +D+        +L  C H F   CID W +   TCP+CR+P I+
Sbjct: 171 RSKDKECAICMEKV--YDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS 228

Length = 238

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLC 218
           C ICL ++       +LP C H F   CI  WLES N TCP+C
Sbjct: 1   CPICLEEYL--KDPVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRS 220
           C ICL      D + L P C H F   CI  +L+    CP+CR+
Sbjct: 5   CPICLDLLR--DPVVLTP-CGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 4/43 (9%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLC 218
           C ICL + +  D + +LP C H F ++CI +WLES N+TCPLC
Sbjct: 1   CPICLEEPK--DPVTILP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 170 RSSSGGDCAICLFKFEPHDQLRL-LPLCCHAFHARCIDTWLE---SNLTCPLCR 219
           R S  G C  C F   P D   L    C H FH  CI  WL    S   CP+CR
Sbjct: 28  RVSFDGTCPQCKF---PGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPMCR 78

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)

Query: 166 SVSRRSSSGGDCAICLFKF--EPHDQL--------RLLPLCCHAFHARCIDTWLESNLTC 215
           +  + ++S   C IC+ +     H+ L        + LP C H  H  C+  WLE   TC
Sbjct: 279 TEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTC 337

Query: 216 PLCRSPIIATE 226
           P+CR P+I  +
Sbjct: 338 PICRRPVIFDQ 348

Length = 491

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.73
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.46
PHA02929	238	N1R/p28-like protein; Provisional	99.26
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.19
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.19
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.18
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.89
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.88
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.85
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.83
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.82
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.77
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.77
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.74
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.67
PHA02926	242	zinc finger-like protein; Provisional	98.65
PF14634	44	zf-RING_5: zinc-RING finger domain	98.63
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.58
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.57
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.53
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.52
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.37
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.37
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.32
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.23
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.19
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.18
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.14
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.09
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.09
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.08
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.96
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.96
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.9
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.8
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.8
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.79
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.79
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	97.77
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.68
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.65
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.62
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.62
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.52
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.47
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.45
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.39
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.37
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.31
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.06
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.06
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.93
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.9
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.83
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.6
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.52
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	96.43
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.32
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.17
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.14
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.95
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	95.8
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	95.65
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.57
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.44
PHA02862	156	5L protein; Provisional	95.36
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	95.12
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.06
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.04
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.99
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	94.91
COG5152	259	Uncharacterized conserved protein, contains RING a	94.8
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	94.78
PF04641	260	Rtf2: Rtf2 RING-finger	94.71
PHA03096	284	p28-like protein; Provisional	94.68
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.66
KOG4739	233	consensus Uncharacterized protein involved in syna	94.54
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.26
KOG2660	331	consensus Locus-specific chromosome binding protei	93.97
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	93.58
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.17
KOG1940	276	consensus Zn-finger protein [General function pred	93.15
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	93.11
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	93.09
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	93.04
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	92.69
COG5222	427	Uncharacterized conserved protein, contains RING Z	92.48
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	91.17
KOG1001	674	consensus Helicase-like transcription factor HLTF/	90.4
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	90.35
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	89.9
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	89.88
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.67
COG5175	480	MOT2 Transcriptional repressor [Transcription]	89.41
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	89.09
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	88.74
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	87.86
KOG1609	323	consensus Protein involved in mRNA turnover and st	86.75
KOG0298	1394	consensus DEAD box-containing helicase-like transc	85.14
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	84.74
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	84.67
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	84.09
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	82.39
KOG3002	299	consensus Zn finger protein [General function pred	82.04
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	80.49

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=8.5e-18  Score=165.99  Aligned_cols=74  Identities=36%  Similarity=0.840  Sum_probs=66.2

Q ss_pred             CCCHHHHhhCCceeecccccCCCCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCCCcCcCCcCC
Q 037216          150 NPAFSVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL-TCPLCRSPIIAT  225 (379)
Q Consensus       150 ~l~~~~i~slP~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~-~CP~CR~~l~~~  225 (379)
                      .+.++.++++|..+|.+..+.... +.|+||||+|..|+++|+|| |+|.||..|||+||.++. .||+||+++...
T Consensus       206 r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~  280 (348)
T KOG4628|consen  206 RLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD  280 (348)
T ss_pred             hhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence            566899999999999998876544 79999999999999999999 999999999999999875 599999987654

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.46  E-value=1.7e-14  Score=102.12  Aligned_cols=44  Identities=48%  Similarity=1.178  Sum_probs=40.5

Q ss_pred             CcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcC
Q 037216          175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCR  219 (379)
Q Consensus       175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR  219 (379)
                      ++|+||+++|..++.+..++ |||+||.+||..|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            47999999999999999999 999999999999999999999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.26  E-value=4.7e-12  Score=120.29  Aligned_cols=74  Identities=30%  Similarity=0.644  Sum_probs=56.9

Q ss_pred             CCCHHHHhhCCceeeccccc-CCCCCCcCccccccccCCC----ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          150 NPAFSVMDSLPLFAFSSVSR-RSSSGGDCAICLFKFEPHD----QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       150 ~l~~~~i~slP~~~~~~~~~-~~~~~~~C~ICl~~~~~~~----~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      +..+..++.+|.+...-... ....+.+|+||++++....    .+.+++.|+|.||..||..|+..+.+||+||.++.
T Consensus       149 ~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        149 KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            45788999999987554322 2235679999999986543    12345459999999999999999999999999775

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=3e-11  Score=119.05  Aligned_cols=69  Identities=33%  Similarity=0.806  Sum_probs=52.9

Q ss_pred             HHHhhCCceeecccccCCCCCCcCcccccc-ccCC---------CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          154 SVMDSLPLFAFSSVSRRSSSGGDCAICLFK-FEPH---------DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       154 ~~i~slP~~~~~~~~~~~~~~~~C~ICl~~-~~~~---------~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      +.-+-+|..+..+.   ..++..|.||+++ |+.+         .+.+.|| |||+||.+|++.|++++++||+||.++.
T Consensus       270 dl~~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         270 DLNAMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             HHHhhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence            34444555544433   3478899999999 5544         2467899 9999999999999999999999999976


Q ss_pred             CCc
Q 037216          224 ATE  226 (379)
Q Consensus       224 ~~~  226 (379)
                      .++
T Consensus       346 fd~  348 (491)
T COG5243         346 FDQ  348 (491)
T ss_pred             ccc
Confidence            653

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.19  E-value=1.1e-11  Score=97.36  Aligned_cols=46  Identities=46%  Similarity=0.971  Sum_probs=36.2

Q ss_pred             CCCcCccccccccCC----------CceeecCCCCCcccHHHHHHHHhcCCCCCCcC
Q 037216          173 SGGDCAICLFKFEPH----------DQLRLLPLCCHAFHARCIDTWLESNLTCPLCR  219 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~----------~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR  219 (379)
                      .++.|+||++++...          -.+.+.+ |||.||..||.+||+.+.+||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence            355799999999321          2344455 999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.1e-11  Score=119.31  Aligned_cols=51  Identities=47%  Similarity=1.104  Sum_probs=46.9

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~  224 (379)
                      .+-+|+|||+.|..++++++|| |.|.||..|+++|+.. +..||+||.++++
T Consensus       322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            4679999999999999999999 9999999999999984 6799999998865

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.89  E-value=1e-09  Score=79.74  Aligned_cols=46  Identities=37%  Similarity=0.900  Sum_probs=39.5

Q ss_pred             CCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      +..|.||++..   ..+.++| |||. |+..|+..|+.....||+||+++.
T Consensus         2 ~~~C~iC~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENP---RDVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSB---SSEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccC---CceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            46899999886   5678888 9999 999999999999999999999874

...

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.88  E-value=1.8e-09  Score=74.53  Aligned_cols=44  Identities=57%  Similarity=1.300  Sum_probs=36.9

Q ss_pred             cCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCC
Q 037216          176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPI  222 (379)
Q Consensus       176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l  222 (379)
                      +|+||++.+  .+...+.+ |||.||..|++.|+.. +..||+||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            599999998  24555565 9999999999999987 77899999864

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=3.8e-09  Score=101.68  Aligned_cols=49  Identities=31%  Similarity=0.737  Sum_probs=42.7

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ....|.+||+..   .....+| |||+||..||..|+..+..||+||....+.
T Consensus       238 a~~kC~LCLe~~---~~pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  238 ATRKCSLCLENR---SNPSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS  286 (293)
T ss_pred             CCCceEEEecCC---CCCCcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence            457899999987   5667778 999999999999999999999999987654

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=2e-09  Score=97.03  Aligned_cols=54  Identities=30%  Similarity=0.641  Sum_probs=43.6

Q ss_pred             CCCCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          170 RSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       170 ~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      .+..-.-|+|||+.+..  ++.+-.+|||+||..||..-++...+||+||..|..+
T Consensus       127 ~~~~~~~CPiCl~~~se--k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  127 RKEGTYKCPICLDSVSE--KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             ccccccCCCceecchhh--ccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            34456789999999963  3434346999999999999999999999999877654

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.82  E-value=3.2e-09  Score=97.63  Aligned_cols=49  Identities=31%  Similarity=0.684  Sum_probs=40.1

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc----------------CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----------------NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----------------~~~CP~CR~~l~~~  225 (379)
                      ++.+|+||++.+   +...+++ |||.||..||..|+..                +..||+||.++...
T Consensus        17 ~~~~CpICld~~---~dPVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         17 GDFDCNICLDQV---RDPVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CccCCccCCCcC---CCcEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            567999999988   4455677 9999999999999852                24799999988653

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.77  E-value=4.2e-09  Score=84.74  Aligned_cols=53  Identities=36%  Similarity=0.860  Sum_probs=40.5

Q ss_pred             CCCcCcccccccc--------CCCc-eeecCCCCCcccHHHHHHHHhc---CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFE--------PHDQ-LRLLPLCCHAFHARCIDTWLES---NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~--------~~~~-~~~Lp~C~H~FH~~Ci~~WL~~---~~~CP~CR~~l~~~  225 (379)
                      .++.|.||...|.        +|+. ..++-.|+|.||..||.+||.+   +..||+||+++..+
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k   84 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK   84 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence            4778999998886        2332 2233349999999999999986   46899999987654

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.77  E-value=3.9e-09  Score=72.81  Aligned_cols=39  Identities=41%  Similarity=1.057  Sum_probs=32.3

Q ss_pred             CccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCc
Q 037216          177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLC  218 (379)
Q Consensus       177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~C  218 (379)
                      |+||++.+.+  .+..++ |||.||.+||..|++.+.+||+|
T Consensus         1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            8999998853  446777 99999999999999998999998

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=7.5e-09  Score=96.98  Aligned_cols=50  Identities=28%  Similarity=0.633  Sum_probs=40.5

Q ss_pred             CCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC---CCCCCcCcCCcCC
Q 037216          172 SSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN---LTCPLCRSPIIAT  225 (379)
Q Consensus       172 ~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~---~~CP~CR~~l~~~  225 (379)
                      ....+|.|||+.-   +..++.. |||.||.-||-+||+.+   +.||+||..+..+
T Consensus        45 ~~~FdCNICLd~a---kdPVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~   97 (230)
T KOG0823|consen   45 GGFFDCNICLDLA---KDPVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID   97 (230)
T ss_pred             CCceeeeeecccc---CCCEEee-cccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence            3678999998886   4455555 99999999999999863   4689999987654

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=6.9e-09  Score=109.74  Aligned_cols=51  Identities=37%  Similarity=0.893  Sum_probs=45.0

Q ss_pred             CCCcCccccccccCCCc--eeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQ--LRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~--~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      .+..|+||++++..+.+  .+.|| |+|+||..|+..|++++++||+||..+..
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD  342 (543)
T ss_pred             cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence            57799999999977654  78898 99999999999999999999999995543

>PHA02926 zinc finger-like protein; Provisional

Probab=98.65  E-value=1.7e-08  Score=94.20  Aligned_cols=51  Identities=29%  Similarity=0.722  Sum_probs=39.4

Q ss_pred             CCCcCccccccccCC-----CceeecCCCCCcccHHHHHHHHhcC------CCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPH-----DQLRLLPLCCHAFHARCIDTWLESN------LTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~-----~~~~~Lp~C~H~FH~~Ci~~WL~~~------~~CP~CR~~l~  223 (379)
                      .+.+|.|||+.....     ..--+|+.|+|.||..||+.|...+      .+||+||..+.
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            568999999986432     1234666699999999999999753      45999999764

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.63  E-value=2.5e-08  Score=70.70  Aligned_cols=44  Identities=32%  Similarity=0.877  Sum_probs=38.1

Q ss_pred             cCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCc
Q 037216          176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRS  220 (379)
Q Consensus       176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~  220 (379)
                      .|.||+++|.+....++++ |||+|+..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            5999999996666788888 9999999999998755679999985

>smart00504 Ubox Modified RING finger domain

Probab=98.58  E-value=5.6e-08  Score=73.08  Aligned_cols=46  Identities=28%  Similarity=0.471  Sum_probs=39.9

Q ss_pred             CcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      ..|+||.+.+.+   ..+++ |||+|++.||..|+..+.+||+|+.++..
T Consensus         2 ~~Cpi~~~~~~~---Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKD---PVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCC---CEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            479999999854   45677 99999999999999988999999998744

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>smart00184 RING Ring finger

Probab=98.57  E-value=4.9e-08  Score=64.92  Aligned_cols=38  Identities=47%  Similarity=1.173  Sum_probs=33.0

Q ss_pred             CccccccccCCCceeecCCCCCcccHHHHHHHHh-cCCCCCCc
Q 037216          177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-SNLTCPLC  218 (379)
Q Consensus       177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~-~~~~CP~C  218 (379)
                      |+||++..   ....+++ |||.||..|++.|+. .+..||+|
T Consensus         1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            88998883   6777888 999999999999998 56789988

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.53  E-value=6e-08  Score=67.17  Aligned_cols=39  Identities=51%  Similarity=1.251  Sum_probs=32.7

Q ss_pred             CccccccccCCCceeecCCCCCcccHHHHHHHHh--cCCCCCCc
Q 037216          177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE--SNLTCPLC  218 (379)
Q Consensus       177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~--~~~~CP~C  218 (379)
                      |+||++.+..  ..++++ |||.||..||.+|+.  ....||+|
T Consensus         1 C~iC~~~~~~--~~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFED--PVILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSS--EEEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccC--CCEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            8999999853  335777 999999999999998  45689998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.52  E-value=6.8e-08  Score=68.02  Aligned_cols=38  Identities=37%  Similarity=0.938  Sum_probs=29.5

Q ss_pred             CccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCCCc
Q 037216          177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----LTCPLC  218 (379)
Q Consensus       177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP~C  218 (379)
                      |+||++-|   .+...|+ |||.|+..||..|.+..    ..||.|
T Consensus         1 CpiC~~~~---~~Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLF---KDPVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB----SSEEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhh---CCccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999   6677888 99999999999999763    369988

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.37  E-value=2.6e-07  Score=93.97  Aligned_cols=48  Identities=33%  Similarity=0.661  Sum_probs=41.3

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      ....|+||++.|.   ...+++ |||.||..||..|+.....||+||..+..
T Consensus        25 ~~l~C~IC~d~~~---~Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        25 TSLRCHICKDFFD---VPVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             cccCCCcCchhhh---CccCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence            5679999999984   445677 99999999999999988899999998754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=4e-07  Score=93.06  Aligned_cols=51  Identities=35%  Similarity=0.973  Sum_probs=39.2

Q ss_pred             CCCcCccccccccC---CCc-----------eeecCCCCCcccHHHHHHHHhcC-CCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEP---HDQ-----------LRLLPLCCHAFHARCIDTWLESN-LTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~---~~~-----------~~~Lp~C~H~FH~~Ci~~WL~~~-~~CP~CR~~l~~  224 (379)
                      ...+|+||+.++..   +..           -.+.| |.|+||..|+..|+..- -.||+||.++.+
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            45699999988742   111           12457 99999999999999854 499999999864

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.32  E-value=3.9e-07  Score=72.13  Aligned_cols=51  Identities=37%  Similarity=0.801  Sum_probs=37.5

Q ss_pred             CcCccccccc-----------cCCCcee-ecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          175 GDCAICLFKF-----------EPHDQLR-LLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       175 ~~C~ICl~~~-----------~~~~~~~-~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      +.|+||...+           .+++++. ..-.|.|.||..||.+||..+..||+||+++...
T Consensus        21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~   83 (88)
T COG5194          21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA   83 (88)
T ss_pred             chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence            4666666554           3444332 2223999999999999999999999999987643

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=3.8e-07  Score=71.60  Aligned_cols=52  Identities=38%  Similarity=0.888  Sum_probs=38.2

Q ss_pred             CCCcCcccccccc--------CCCce-eecCCCCCcccHHHHHHHHhc---CCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFE--------PHDQL-RLLPLCCHAFHARCIDTWLES---NLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~--------~~~~~-~~Lp~C~H~FH~~Ci~~WL~~---~~~CP~CR~~l~~  224 (379)
                      .++.|-||.-+|.        +|+.+ .++-.|.|.||..||.+|+..   +..||+||+.+..
T Consensus        19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~   82 (84)
T KOG1493|consen   19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF   82 (84)
T ss_pred             CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence            4558999988885        23322 233349999999999999965   4579999997653

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.19  E-value=1e-06  Score=62.49  Aligned_cols=38  Identities=32%  Similarity=0.854  Sum_probs=22.6

Q ss_pred             CccccccccCCC-ceeecCCCCCcccHHHHHHHHhcC----CCCC
Q 037216          177 CAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLESN----LTCP  216 (379)
Q Consensus       177 C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP  216 (379)
                      |+||.+ |...+ ...+|+ |||+|+++||+.++...    -+||
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 75544 568899 99999999999999743    2576

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=7.9e-07  Score=84.92  Aligned_cols=50  Identities=28%  Similarity=0.714  Sum_probs=41.5

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHH-HHhcCC-CCCCcCcCCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDT-WLESNL-TCPLCRSPIIATE  226 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~-WL~~~~-~CP~CR~~l~~~~  226 (379)
                      .+..|+||++..   .....++ |||+||..||.. |-.++. .||+||+....++
T Consensus       214 ~d~kC~lC~e~~---~~ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         214 ADYKCFLCLEEP---EVPSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             cccceeeeeccc---CCccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            467899998887   5666777 999999999999 887665 4999999877653

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.2e-06  Score=90.18  Aligned_cols=48  Identities=31%  Similarity=0.582  Sum_probs=37.5

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-----CCCCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-----NLTCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-----~~~CP~CR~~l~~~  225 (379)
                      +..|+|||++...   ...+ .|||+||..||-.++..     ...||+||..|..+
T Consensus       186 ~~~CPICL~~~~~---p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k  238 (513)
T KOG2164|consen  186 DMQCPICLEPPSV---PVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK  238 (513)
T ss_pred             CCcCCcccCCCCc---cccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence            6799999998632   2223 39999999999998864     35799999988664

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.09  E-value=2.7e-06  Score=61.88  Aligned_cols=42  Identities=26%  Similarity=0.780  Sum_probs=32.7

Q ss_pred             cCccccccccCCCceeecCCCC-----CcccHHHHHHHHhcC--CCCCCcC
Q 037216          176 DCAICLFKFEPHDQLRLLPLCC-----HAFHARCIDTWLESN--LTCPLCR  219 (379)
Q Consensus       176 ~C~ICl~~~~~~~~~~~Lp~C~-----H~FH~~Ci~~WL~~~--~~CP~CR  219 (379)
                      .|.||++. ..++...+.| |.     |.+|..|++.|+...  .+||+|+
T Consensus         1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            48999983 3444555788 85     899999999999654  4899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.8e-06  Score=85.55  Aligned_cols=48  Identities=35%  Similarity=0.800  Sum_probs=41.6

Q ss_pred             CCCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      +..+|+||+++-   ..+.+|| |.|. .|..|.+..--+++.||+||+++.+
T Consensus       289 ~gkeCVIClse~---rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  289 SGKECVICLSES---RDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             CCCeeEEEecCC---cceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            467999998886   6788999 9997 9999999965678899999998854

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=9.7e-07  Score=84.45  Aligned_cols=51  Identities=31%  Similarity=0.674  Sum_probs=41.2

Q ss_pred             CCCCcCccccccccCCC-------ceeecCCCCCcccHHHHHHHHh--cCCCCCCcCcCCc
Q 037216          172 SSGGDCAICLFKFEPHD-------QLRLLPLCCHAFHARCIDTWLE--SNLTCPLCRSPII  223 (379)
Q Consensus       172 ~~~~~C~ICl~~~~~~~-------~~~~Lp~C~H~FH~~Ci~~WL~--~~~~CP~CR~~l~  223 (379)
                      .++..|+||-..+....       ++-.|. |+|+||..||+-|-.  ++.+||.|+..+.
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            36789999998876544       566777 999999999999964  4679999987664

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.96  E-value=1.6e-06  Score=94.10  Aligned_cols=51  Identities=35%  Similarity=0.818  Sum_probs=37.7

Q ss_pred             CCCcCccccccccC-CCc--eeecCCCCCcccHHHHHHHHhc--CCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEP-HDQ--LRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~-~~~--~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~~l~  223 (379)
                      +..+|+||+.-+.. +..  -...+.|.|.||..|+.+|++.  +++||+||..+.
T Consensus      1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            56799999887641 111  1122339999999999999986  568999998764

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.96  E-value=6.6e-06  Score=80.94  Aligned_cols=51  Identities=22%  Similarity=0.514  Sum_probs=37.0

Q ss_pred             CCcCccccccccCCCc--eeecCCCCCcccHHHHHHHHh-cCCCCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFEPHDQ--LRLLPLCCHAFHARCIDTWLE-SNLTCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~--~~~Lp~C~H~FH~~Ci~~WL~-~~~~CP~CR~~l~~~  225 (379)
                      +..|+||...-.....  +-+-+ |||.||..||+..+. ....||.|+.++...
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~   56 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKN   56 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence            4689999986333333  33335 999999999999654 356899998877543

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.90  E-value=6.4e-06  Score=64.56  Aligned_cols=49  Identities=27%  Similarity=0.447  Sum_probs=38.2

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~  225 (379)
                      ....|+||.+-|   ....++| +||.|.+.||..||.. +.+||+|+.++...
T Consensus         3 ~~f~CpIt~~lM---~dPVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    3 DEFLCPITGELM---RDPVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGGB-TTTSSB----SSEEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             cccCCcCcCcHh---hCceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            356899999999   6667888 9999999999999998 88999999988654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.80  E-value=9.7e-06  Score=78.45  Aligned_cols=48  Identities=29%  Similarity=0.543  Sum_probs=39.5

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      .-..|-||-+-|   ....+.+ |||.||.-||...|..+..||+||.+..+
T Consensus        24 s~lrC~IC~~~i---~ip~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          24 SMLRCRICDCRI---SIPCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             hHHHhhhhhhee---ecceecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence            345799998877   3444556 99999999999999999999999986543

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=8.9e-06  Score=76.05  Aligned_cols=44  Identities=41%  Similarity=0.875  Sum_probs=38.3

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRS  220 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~  220 (379)
                      ....|+||++.|...   .++| |||.||..|+..++.....||.||.
T Consensus        12 ~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   12 EELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence            567999999999654   8888 9999999999999875568999993

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.79  E-value=7.4e-06  Score=80.68  Aligned_cols=48  Identities=29%  Similarity=0.691  Sum_probs=41.7

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      --.|-||.+-|   ....+.| |+|.||.-||+.+|..+..||.|+.++.+.
T Consensus        23 lLRC~IC~eyf---~ip~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es   70 (442)
T KOG0287|consen   23 LLRCGICFEYF---NIPMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES   70 (442)
T ss_pred             HHHHhHHHHHh---cCceecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence            34799999988   5666788 999999999999999999999999877654

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.79  E-value=4e-06  Score=65.45  Aligned_cols=52  Identities=31%  Similarity=0.634  Sum_probs=24.8

Q ss_pred             CCcCcccccccc-CCCc-eeec--CCCCCcccHHHHHHHHhc---C--------CCCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFE-PHDQ-LRLL--PLCCHAFHARCIDTWLES---N--------LTCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~-~~~~-~~~L--p~C~H~FH~~Ci~~WL~~---~--------~~CP~CR~~l~~~  225 (379)
                      +.+|.||++.+. .++. ..+-  +.|++.||..||..||..   .        .+||.|+.+|..+
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~   68 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS   68 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence            358999999876 3332 2222  259999999999999964   1        1499999988653

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=3.9e-06  Score=83.35  Aligned_cols=44  Identities=27%  Similarity=0.584  Sum_probs=33.7

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      ..+.|.||+++.   .....+| |||+-|  |...- +...+||+||+.|.
T Consensus       304 ~p~lcVVcl~e~---~~~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  304 QPDLCVVCLDEP---KSAVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             CCCceEEecCCc---cceeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            567899999987   4578899 999965  66663 33456999998764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.68  E-value=1.4e-05  Score=81.21  Aligned_cols=48  Identities=27%  Similarity=0.775  Sum_probs=39.2

Q ss_pred             CCCcCccccccccCCC-ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      +...|+|||+.+.... -++... |.|.||..|+..|-  ..+||+||....
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             cCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence            5668999999997554 234455 99999999999998  569999998766

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=1.6e-05  Score=58.72  Aligned_cols=46  Identities=28%  Similarity=0.558  Sum_probs=34.7

Q ss_pred             CCCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHh-cCCCCCCcCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLE-SNLTCPLCRSPI  222 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~-~~~~CP~CR~~l  222 (379)
                      -+++|.||++.-   ..-.+.. |||. .|.+|-..-++ .+..||+||++|
T Consensus         6 ~~dECTICye~p---vdsVlYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi   53 (62)
T KOG4172|consen    6 WSDECTICYEHP---VDSVLYT-CGHMCMCYACGLRLKKALHGCCPICRAPI   53 (62)
T ss_pred             cccceeeeccCc---chHHHHH-cchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence            347999997764   3333444 9998 89999777555 578999999986

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=2.4e-05  Score=78.38  Aligned_cols=45  Identities=33%  Similarity=0.911  Sum_probs=33.9

Q ss_pred             CcCccccccccCCCceeecCCCCCcccHHHHHHHHhc---CCCCCCcC
Q 037216          175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES---NLTCPLCR  219 (379)
Q Consensus       175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~---~~~CP~CR  219 (379)
                      ..|.||.+-+.....+.-+-.|||+||..|+..|+..   +.+||+|+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            5899995444433445444349999999999999975   45899998

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=2.6e-05  Score=64.75  Aligned_cols=52  Identities=31%  Similarity=0.661  Sum_probs=37.6

Q ss_pred             CCCcCcccccccc------------CCCce-eecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFE------------PHDQL-RLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~------------~~~~~-~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      .-+.|+||..-+-            ..+++ ..--.|+|.||..||..||++++.||+|-+++..
T Consensus        45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~  109 (114)
T KOG2930|consen   45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF  109 (114)
T ss_pred             eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence            3467999875431            11222 2222399999999999999999999999887754

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=1.1e-05  Score=79.85  Aligned_cols=49  Identities=33%  Similarity=0.576  Sum_probs=41.1

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~  224 (379)
                      .+..|+|||+-+   +..+..+.|.|-||.+||..-++. ++.||.||+.+..
T Consensus        42 ~~v~c~icl~ll---k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S   91 (381)
T KOG0311|consen   42 IQVICPICLSLL---KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS   91 (381)
T ss_pred             hhhccHHHHHHH---HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence            567899999988   555666679999999999998875 7899999997753

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=5.9e-05  Score=75.57  Aligned_cols=50  Identities=34%  Similarity=0.909  Sum_probs=39.7

Q ss_pred             CCCcCccccccccCCC----ceeecCCCCCcccHHHHHHHH--hc-----CCCCCCcCcCC
Q 037216          173 SGGDCAICLFKFEPHD----QLRLLPLCCHAFHARCIDTWL--ES-----NLTCPLCRSPI  222 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~----~~~~Lp~C~H~FH~~Ci~~WL--~~-----~~~CP~CR~~l  222 (379)
                      .+..|.||++......    ...+||.|.|.||..||+.|-  .+     .+.||.||...
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            5779999999875433    135667899999999999998  44     47899999865

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.45  E-value=2.7e-05  Score=83.51  Aligned_cols=49  Identities=22%  Similarity=0.472  Sum_probs=41.4

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      ...|++||..+.++......+ |+|.||..||+.|-+...+||+||..+.
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence            446999999987666665666 9999999999999999999999998653

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.39  E-value=5.3e-05  Score=73.71  Aligned_cols=53  Identities=32%  Similarity=0.821  Sum_probs=43.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh-----------------------cCCCCCCcCcCCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-----------------------SNLTCPLCRSPIIATE  226 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~-----------------------~~~~CP~CR~~l~~~~  226 (379)
                      ...+|+|||.-|..++...+.+ |-|.||..|+..+|.                       .+-.||+||..|..+.
T Consensus       114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~  189 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE  189 (368)
T ss_pred             CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence            4569999999999988888888 999999999998882                       1225999999886544

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=8.6e-05  Score=72.36  Aligned_cols=49  Identities=33%  Similarity=0.560  Sum_probs=39.0

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~  225 (379)
                      ...+|+||+...   .....|+ |+|.||..||.--... ..+|++||.+|..+
T Consensus         6 ~~~eC~IC~nt~---n~Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    6 KKKECLICYNTG---NCPVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cCCcceeeeccC---CcCcccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            356999997775   5556777 9999999999986654 45799999998653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.00014  Score=73.51  Aligned_cols=48  Identities=33%  Similarity=0.885  Sum_probs=36.7

Q ss_pred             CCCcCccccccccC-CCceeecCCCCCcccHHHHHHHHhc--CCCCCCcCc
Q 037216          173 SGGDCAICLFKFEP-HDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRS  220 (379)
Q Consensus       173 ~~~~C~ICl~~~~~-~~~~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~  220 (379)
                      ....|+|||+.+.. +++....+.|||.|..+||+.||.+  ...||.|..
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~   53 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG   53 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence            35689999999864 4444444459999999999999963  246999954

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.06  E-value=0.00014  Score=55.76  Aligned_cols=48  Identities=27%  Similarity=0.627  Sum_probs=23.7

Q ss_pred             CcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCCcc
Q 037216          175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATET  227 (379)
Q Consensus       175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~~~  227 (379)
                      --|.+|.+-+   ++...+..|.|+||..||..-+.  ..||+|+.+.-.++-
T Consensus         8 LrCs~C~~~l---~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~   55 (65)
T PF14835_consen    8 LRCSICFDIL---KEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDI   55 (65)
T ss_dssp             TS-SSS-S-----SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS-
T ss_pred             cCCcHHHHHh---cCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHH
Confidence            4799998887   55555556999999999988553  469999987765543

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.06  E-value=0.0002  Score=72.13  Aligned_cols=48  Identities=35%  Similarity=0.878  Sum_probs=39.9

Q ss_pred             cCccccccccCCCceeecCCCCCcccHHHHHHHHhc--CCCCCCcCcCCcCCcc
Q 037216          176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPIIATET  227 (379)
Q Consensus       176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~~l~~~~~  227 (379)
                      .|.||-+.   ++.+++-| |||..|..|+..|-..  .++||.||..|-..+.
T Consensus       371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~  420 (563)
T KOG1785|consen  371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP  420 (563)
T ss_pred             HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence            49999665   46788888 9999999999999854  5699999998876654

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.00051  Score=70.23  Aligned_cols=48  Identities=31%  Similarity=0.772  Sum_probs=41.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      .+.+|.||+..+   .....+| |||.||..||++-+.+..-||+||..+..
T Consensus        83 sef~c~vc~~~l---~~pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   83 SEFECCVCSRAL---YPPVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             chhhhhhhHhhc---CCCcccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence            678999998887   4556678 99999999999988877889999999875

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.00038  Score=75.11  Aligned_cols=47  Identities=26%  Similarity=0.663  Sum_probs=36.4

Q ss_pred             CcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216          175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT  225 (379)
Q Consensus       175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~  225 (379)
                      -.|++|-..+   +.+.+. +|||+||..||..-+.. +.+||.|-..+.+.
T Consensus       644 LkCs~Cn~R~---Kd~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan  691 (698)
T KOG0978|consen  644 LKCSVCNTRW---KDAVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGAN  691 (698)
T ss_pred             eeCCCccCch---hhHHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence            4699996554   445444 59999999999998864 77999998877554

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.83  E-value=0.00073  Score=76.57  Aligned_cols=69  Identities=25%  Similarity=0.569  Sum_probs=51.6

Q ss_pred             HHHhhCCceeecccccCCCCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC----------CCCCCcCcCCc
Q 037216          154 SVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----------LTCPLCRSPII  223 (379)
Q Consensus       154 ~~i~slP~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----------~~CP~CR~~l~  223 (379)
                      ....-||-+...+.......++.|.||+.+-......+.|- |+|+||..|.+.-|...          -+||+|+.+|.
T Consensus      3466 NEE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3466 NEEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             chhhcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            34455777776555555557889999987765556677887 99999999999877542          26999999875

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0014  Score=61.78  Aligned_cols=52  Identities=27%  Similarity=0.689  Sum_probs=43.9

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc--------CCCCCCcCcCCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--------NLTCPLCRSPIIATE  226 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--------~~~CP~CR~~l~~~~  226 (379)
                      -...|..|--.+..++.+|+.  |-|+||.+|+++|-..        ...||.|-.+|++.-
T Consensus        49 Y~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~  108 (299)
T KOG3970|consen   49 YNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI  108 (299)
T ss_pred             CCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence            456899999999999988776  9999999999999854        347999999988654

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.52  E-value=0.0017  Score=66.51  Aligned_cols=50  Identities=28%  Similarity=0.592  Sum_probs=40.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      .+..|++|...+.+....  .. |||.||..|+..|+..+..||.|+..+...
T Consensus        20 ~~l~C~~C~~vl~~p~~~--~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~   69 (391)
T KOG0297|consen   20 ENLLCPICMSVLRDPVQT--TT-CGHRFCAGCLLESLSNHQKCPVCRQELTQA   69 (391)
T ss_pred             ccccCccccccccCCCCC--CC-CCCcccccccchhhccCcCCcccccccchh
Confidence            567899999988543332  34 999999999999999999999998877544

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.0032  Score=63.94  Aligned_cols=48  Identities=29%  Similarity=0.661  Sum_probs=38.5

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC--------CCCCCcCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN--------LTCPLCRSP  221 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~--------~~CP~CR~~  221 (379)
                      ...+|.||+++.........|| |+|+||+.|+..++..+        -+||-|.-.
T Consensus       183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            5679999999976556788999 99999999999998542        268877554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.32  E-value=0.0014  Score=66.09  Aligned_cols=46  Identities=39%  Similarity=0.860  Sum_probs=38.4

Q ss_pred             CCcCccccccccCCC-ceeecCCCCCcccHHHHHHHHhcC--CCCCCcCc
Q 037216          174 GGDCAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLESN--LTCPLCRS  220 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~~~--~~CP~CR~  220 (379)
                      +--|..|-+.+...+ .+.-|| |.|+||..|+...|.++  .+||.||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            446999998886544 678899 99999999999999764  58999994

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.17  E-value=0.0028  Score=47.54  Aligned_cols=42  Identities=29%  Similarity=0.604  Sum_probs=26.4

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc--CCCCCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPL  217 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~  217 (379)
                      ....|+|.+..|.  +.++-. .|||+|-++.|..||..  ...||+
T Consensus        10 ~~~~CPiT~~~~~--~PV~s~-~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFE--DPVKSK-KCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-S--SEEEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhh--CCcCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence            4568999999995  334434 49999999999999944  347998

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.14  E-value=0.0019  Score=56.45  Aligned_cols=44  Identities=20%  Similarity=0.452  Sum_probs=33.1

Q ss_pred             CCcCccccccccCCCceeecCCCC------CcccHHHHHHHHhcCCCCCCc
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCC------HAFHARCIDTWLESNLTCPLC  218 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~------H~FH~~Ci~~WL~~~~~CP~C  218 (379)
                      ..+|.||++.+..++-++.++ ||      |+||.+|+.+|-+.++.=|-=
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPfn   75 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPFN   75 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCcc
Confidence            569999999998856666777 66      789999999995444333433

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.95  E-value=0.0079  Score=59.95  Aligned_cols=66  Identities=24%  Similarity=0.422  Sum_probs=49.6

Q ss_pred             HHHHhhCCceeecccccCCCCCCcCccccccccCCCceeecCCCCCcccHHHHHHH--HhcCCCCCCcCcCC
Q 037216          153 FSVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTW--LESNLTCPLCRSPI  222 (379)
Q Consensus       153 ~~~i~slP~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~W--L~~~~~CP~CR~~l  222 (379)
                      +..+..-|..+.++..+...+...|.||-+..   .-..++| |+|..|..|--.-  |..++.||+||...
T Consensus        40 KNnlsaEPnlttsSaddtDEen~~C~ICA~~~---TYs~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          40 KNNLSAEPNLTTSSADDTDEENMNCQICAGST---TYSARYP-CGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             ccccccCCccccccccccccccceeEEecCCc---eEEEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            44556667777766666666677899998776   4567889 9999999997552  44578999999865

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.0029  Score=56.84  Aligned_cols=41  Identities=29%  Similarity=0.715  Sum_probs=31.9

Q ss_pred             CceeecccccCCCCCCcCccccccccCCCceeecCCCCCcccH
Q 037216          160 PLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHA  202 (379)
Q Consensus       160 P~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~  202 (379)
                      |.+.|++.... ....+|+||||++..++.+..|| |-.+||+
T Consensus       164 PrlsYNdDVL~-ddkGECvICLEdL~~GdtIARLP-CLCIYHK  204 (205)
T KOG0801|consen  164 PRLSYNDDVLK-DDKGECVICLEDLEAGDTIARLP-CLCIYHK  204 (205)
T ss_pred             cccccccchhc-ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence            45555543322 25679999999999999999999 9999996

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.0098  Score=59.44  Aligned_cols=67  Identities=24%  Similarity=0.419  Sum_probs=48.0

Q ss_pred             HHHhhCCceeeccccc-CC-CCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          154 SVMDSLPLFAFSSVSR-RS-SSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       154 ~~i~slP~~~~~~~~~-~~-~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      ..++.+|..+-....+ .. .++..|+||+..   .-.....| |+|.-|..||.+-|...+.|=.|+..+..
T Consensus       400 r~~~~l~~~~~~~~~~~lp~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  400 RASSQLPERKEESFNKDLPDSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             HHHhhcchhhHHhhcCCCCCcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            3445555544333222 22 367889999543   35566778 99999999999999999999999998764

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.57  E-value=0.016  Score=55.38  Aligned_cols=54  Identities=11%  Similarity=0.280  Sum_probs=47.0

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATE  226 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~~  226 (379)
                      ..+.|+||.+.+.+...+..|..|||+|+.+|+...+..-..||+|-.++...+
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd  273 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD  273 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence            356799999999988888888779999999999998888889999988876653

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.44  E-value=0.041  Score=54.65  Aligned_cols=47  Identities=23%  Similarity=0.454  Sum_probs=36.1

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI  222 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l  222 (379)
                      ....|+||+....++.   ++.--|-+||..||-.++..++.||+=-.+.
T Consensus       299 ~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             ccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            5668999998875332   2222699999999999999999999865443

>PHA02862 5L protein; Provisional

Probab=95.36  E-value=0.013  Score=51.79  Aligned_cols=47  Identities=21%  Similarity=0.533  Sum_probs=34.7

Q ss_pred             CCcCccccccccCCCceeecCCCC-----CcccHHHHHHHHhc--CCCCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCC-----HAFHARCIDTWLES--NLTCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~-----H~FH~~Ci~~WL~~--~~~CP~CR~~l~~~  225 (379)
                      ++.|-||+++-.+.    .-| |.     ..-|.+|+..|+..  +..|++|+.+..-+
T Consensus         2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik   55 (156)
T PHA02862          2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK   55 (156)
T ss_pred             CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence            36899999885322    345 54     36899999999965  45899999877544

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=95.12  E-value=0.014  Score=42.03  Aligned_cols=40  Identities=33%  Similarity=0.865  Sum_probs=26.9

Q ss_pred             CccccccccCCCceeecCCCC--C---cccHHHHHHHHhc--CCCCCCc
Q 037216          177 CAICLFKFEPHDQLRLLPLCC--H---AFHARCIDTWLES--NLTCPLC  218 (379)
Q Consensus       177 C~ICl~~~~~~~~~~~Lp~C~--H---~FH~~Ci~~WL~~--~~~CP~C  218 (379)
                      |-||+++-.... .-+.| |+  -   ..|..|+..|+..  +.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            789998876555 33455 65  2   6899999999974  5679987

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.06  E-value=0.0082  Score=49.30  Aligned_cols=32  Identities=25%  Similarity=0.676  Sum_probs=26.7

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHH
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCID  206 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~  206 (379)
                      .+..|++|-..+.. ....+.| |||+||..|++
T Consensus        77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence            46689999999976 4566778 99999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.04  E-value=0.0067  Score=66.35  Aligned_cols=48  Identities=31%  Similarity=0.761  Sum_probs=38.4

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC-------CCCCCcCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN-------LTCPLCRS  220 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~-------~~CP~CR~  220 (379)
                      ...+|.||++.+.....+.--..|-|+||..||..|-++.       -.||.|+.
T Consensus       190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            5679999999997766665444489999999999998652       15999984

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.99  E-value=0.013  Score=61.31  Aligned_cols=49  Identities=29%  Similarity=0.659  Sum_probs=38.1

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-----CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-----NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-----~~~CP~CR~~l~~~  225 (379)
                      +..+|-+|-++-   +...... |.|.||+.||..++..     +-+||.|...+.-+
T Consensus       535 ~~~~C~lc~d~a---ed~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  535 GEVECGLCHDPA---EDYIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             CceeecccCChh---hhhHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            567899998775   4444555 9999999999888753     45899998877654

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.91  E-value=0.081  Score=51.44  Aligned_cols=48  Identities=27%  Similarity=0.472  Sum_probs=35.4

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc--CCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~~l~  223 (379)
                      .+.+|++|-+.-..  .-...+ |||+||.-||..=+..  .-+||.|-.+..
T Consensus       238 ~~~~C~~Cg~~Pti--P~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTI--PHVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCC--Ceeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            67899999776432  223444 9999999999986643  258999977654

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.80  E-value=0.012  Score=54.69  Aligned_cols=45  Identities=20%  Similarity=0.445  Sum_probs=37.3

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI  222 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l  222 (379)
                      ...|-||-.+|   +..++.. |||.||..|...=++....|-+|-...
T Consensus       196 PF~C~iCKkdy---~spvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         196 PFLCGICKKDY---ESPVVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             ceeehhchhhc---cchhhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence            45799999999   5555666 999999999988788788999997643

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.78  E-value=0.0053  Score=59.88  Aligned_cols=42  Identities=31%  Similarity=0.627  Sum_probs=33.5

Q ss_pred             CCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      ...|+||++.-   ..+..|+ |||. -|.+|-..    -+.||+||+-|.
T Consensus       300 ~~LC~ICmDaP---~DCvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAP---RDCVFLE-CGHMVTCTKCGKR----MNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCC---cceEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence            55799997664   7889999 9996 88888665    348999998653

>PF04641 Rtf2: Rtf2 RING-finger

Probab=94.71  E-value=0.035  Score=53.78  Aligned_cols=53  Identities=19%  Similarity=0.461  Sum_probs=40.3

Q ss_pred             CCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          172 SSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       172 ~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      .....|+|+..+|........|-.|||+|...+|.. +.....||+|-.++...
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke-~k~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKE-LKKSKKCPVCGKPFTEE  163 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHh-hcccccccccCCccccC
Confidence            367789999999965555555534999999999999 44356899998876543

>PHA03096 p28-like protein; Provisional

Probab=94.68  E-value=0.018  Score=56.69  Aligned_cols=46  Identities=28%  Similarity=0.527  Sum_probs=34.3

Q ss_pred             CcCccccccccCC----CceeecCCCCCcccHHHHHHHHhc---CCCCCCcCc
Q 037216          175 GDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLES---NLTCPLCRS  220 (379)
Q Consensus       175 ~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~---~~~CP~CR~  220 (379)
                      ..|.||++.....    ..--+|+.|.|.||..||..|-..   ..+||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            6899999987543    234578889999999999999854   335555554

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.66  E-value=0.028  Score=40.81  Aligned_cols=44  Identities=27%  Similarity=0.618  Sum_probs=21.4

Q ss_pred             CccccccccCCC-ceeecCCCCCcccHHHHHHHHh-cCCCCCCcCcC
Q 037216          177 CAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLE-SNLTCPLCRSP  221 (379)
Q Consensus       177 C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~-~~~~CP~CR~~  221 (379)
                      |++|.+++...+ ...--+ ||+.++..|...-+. ....||-||.+
T Consensus         1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~   46 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREP   46 (48)
T ss_dssp             -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B
T ss_pred             CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence            789999994333 333334 889999999888554 36789999986

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.54  E-value=0.015  Score=55.33  Aligned_cols=44  Identities=30%  Similarity=0.645  Sum_probs=32.2

Q ss_pred             cCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      .|..|..--. ++...++. |+|+||..|...-.  ...||+|+.++-
T Consensus         5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir   48 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIR   48 (233)
T ss_pred             EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceee
Confidence            5887765433 56666666 99999999977622  349999999863

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.26  E-value=0.049  Score=49.01  Aligned_cols=48  Identities=23%  Similarity=0.628  Sum_probs=34.3

Q ss_pred             CCCcCccccccccCCCceeecC-CCCC---cccHHHHHHHHhc--CCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLP-LCCH---AFHARCIDTWLES--NLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp-~C~H---~FH~~Ci~~WL~~--~~~CP~CR~~l~~  224 (379)
                      .+..|-||.++-..  .  ..| +|..   ..|.+|+..|+..  ...|++|+.+..-
T Consensus         7 ~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i   60 (162)
T PHA02825          7 MDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI   60 (162)
T ss_pred             CCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence            56799999888532  2  234 1434   5799999999975  4579999886643

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=93.97  E-value=0.015  Score=57.67  Aligned_cols=50  Identities=28%  Similarity=0.504  Sum_probs=38.9

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ....|.+|-.-|.+.  ..+. .|-|-||+.||...|...+.||.|...+-..
T Consensus        14 ~~itC~LC~GYliDA--TTI~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDA--TTIT-ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             cceehhhccceeecc--hhHH-HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            456899998777432  2233 3999999999999999999999997766443

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.58  E-value=0.034  Score=54.45  Aligned_cols=47  Identities=21%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      ..+.|-||...|.   ..++.. |+|.||..|...=++....|.+|-+.+.
T Consensus       240 ~Pf~c~icr~~f~---~pVvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  240 LPFKCFICRKYFY---RPVVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             CCccccccccccc---cchhhc-CCceeehhhhccccccCCcceecccccc
Confidence            4567999999994   444554 9999999998887877789999987654

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.17  E-value=0.047  Score=40.65  Aligned_cols=46  Identities=28%  Similarity=0.657  Sum_probs=34.0

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ...|..|...   +.+-.++| |||+.+..|.+-  ..-+.||.|-.++...
T Consensus         7 ~~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~--~rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    7 EQPCVFCGFV---GTKGTVLP-CGHLICDNCFPG--ERYNGCPFCGTPFEFD   52 (55)
T ss_pred             ceeEEEcccc---cccccccc-ccceeeccccCh--hhccCCCCCCCcccCC
Confidence            3456666443   34566888 999999999887  4457899999887654

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=93.15  E-value=0.053  Score=53.03  Aligned_cols=50  Identities=28%  Similarity=0.549  Sum_probs=41.5

Q ss_pred             CCCcCccccccccCCC-ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      ....|+||.+.+.... .+..++ |||.-|..|+......+.+||+|.+ +..
T Consensus       157 ~~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d  207 (276)
T KOG1940|consen  157 SEFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGD  207 (276)
T ss_pred             ccCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHH
Confidence            4556999999887666 566777 9999999999998888899999988 443

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.11  E-value=0.083  Score=51.61  Aligned_cols=47  Identities=30%  Similarity=0.763  Sum_probs=38.3

Q ss_pred             CcCccccccccCCC---ceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCC
Q 037216          175 GDCAICLFKFEPHD---QLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPI  222 (379)
Q Consensus       175 ~~C~ICl~~~~~~~---~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l  222 (379)
                      ..|.||-++|..++   ..+.|. |||.|+..|+..-+.. ...||.||.+.
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence            58999999998764   457776 9999999999986544 23799999985

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=93.09  E-value=0.054  Score=38.30  Aligned_cols=41  Identities=20%  Similarity=0.546  Sum_probs=24.2

Q ss_pred             CccccccccCCCceeecCCCCCcccHHHHHHHHhcCC--CCCCc
Q 037216          177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL--TCPLC  218 (379)
Q Consensus       177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~--~CP~C  218 (379)
                      |.+|-+-...|....... |+=.+|..|++.+++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence            678877777666554333 888999999999998755  79988

; PDB: 3NW0_A 2CT0_A.

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.04  E-value=0.0075  Score=60.88  Aligned_cols=50  Identities=24%  Similarity=0.615  Sum_probs=42.4

Q ss_pred             CCcCccccccccCC-CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          174 GGDCAICLFKFEPH-DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       174 ~~~C~ICl~~~~~~-~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      ...|+||.+.+... +++..+- |||++|.+||.+||.....||.||..+.-
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~  246 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK  246 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence            45799999888655 5666665 99999999999999999999999998864

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.69  E-value=0.07  Score=48.85  Aligned_cols=30  Identities=37%  Similarity=0.970  Sum_probs=24.8

Q ss_pred             CCCcccHHHHHHHHhcC-----------CCCCCcCcCCcCC
Q 037216          196 CCHAFHARCIDTWLESN-----------LTCPLCRSPIIAT  225 (379)
Q Consensus       196 C~H~FH~~Ci~~WL~~~-----------~~CP~CR~~l~~~  225 (379)
                      ||.-||.-|+..||+.-           ..||.|-.++..+
T Consensus       190 CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  190 CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            99999999999999641           2599998887654

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.48  E-value=0.071  Score=52.40  Aligned_cols=43  Identities=30%  Similarity=0.688  Sum_probs=32.8

Q ss_pred             CcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCc
Q 037216          175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRS  220 (379)
Q Consensus       175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~  220 (379)
                      ..|+.|-.-+.   .....|.|+|.||.+||..-|.. ...||.|..
T Consensus       275 LkCplc~~Llr---np~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLR---NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhh---CcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            57999977763   23334679999999999977654 678999954

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=91.17  E-value=0.27  Score=36.62  Aligned_cols=45  Identities=27%  Similarity=0.645  Sum_probs=35.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCC--cCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPL--CRSP  221 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~--CR~~  221 (379)
                      ....|.+|-+.|.+++.+.+-|.||-.+|++|.+.    ...|-.  |..+
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~   50 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG   50 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence            35689999999998888889999999999999544    456655  5443

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=90.40  E-value=0.11  Score=56.91  Aligned_cols=46  Identities=30%  Similarity=0.693  Sum_probs=36.5

Q ss_pred             CcCccccccccCCCceeecCCCCCcccHHHHHHHHhc--CCCCCCcCcCCcCC
Q 037216          175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPIIAT  225 (379)
Q Consensus       175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~~l~~~  225 (379)
                      ..|.||++    .+.+.+.+ |+|.||.+|+..-+..  ...||+||..+..+
T Consensus       455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~  502 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEK  502 (674)
T ss_pred             cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence            79999999    26666676 9999999999887754  23699999876543

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=90.35  E-value=0.13  Score=50.82  Aligned_cols=42  Identities=33%  Similarity=0.795  Sum_probs=29.5

Q ss_pred             cCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCC
Q 037216          176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI  222 (379)
Q Consensus       176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l  222 (379)
                      -|.-|--.+.  ---|++| |.|+||.+|-..  ...+.||.|-..+
T Consensus        92 fCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   92 FCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             eecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence            3777744431  2347888 999999999765  4467999995433

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.90  E-value=0.14  Score=48.26  Aligned_cols=40  Identities=35%  Similarity=0.794  Sum_probs=31.0

Q ss_pred             CccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          177 CAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       177 C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      |-.|-+.   +..+.++| |.|. +|..|-..    -..||+|+.+...
T Consensus       161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s  201 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS  201 (207)
T ss_pred             ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence            8888554   46788999 9997 99999665    3579999986543

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.88  E-value=0.11  Score=55.57  Aligned_cols=42  Identities=29%  Similarity=0.578  Sum_probs=32.3

Q ss_pred             CcCccccccccCCCc-eeecCCCCCcccHHHHHHHHhcCCCCCCcCc
Q 037216          175 GDCAICLFKFEPHDQ-LRLLPLCCHAFHARCIDTWLESNLTCPLCRS  220 (379)
Q Consensus       175 ~~C~ICl~~~~~~~~-~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~  220 (379)
                      -.|.||+..|..... .+.|- |||..|..|+..-.  +.+|| |++
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~-cghtic~~c~~~ly--n~scp-~~~   54 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQ-CGHTICGHCVQLLY--NASCP-TKR   54 (861)
T ss_pred             hhchHHHHHHHHHhcCccccc-ccchHHHHHHHhHh--hccCC-CCc
Confidence            479999999876553 34554 99999999999844  57999 655

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.67  E-value=0.16  Score=56.08  Aligned_cols=42  Identities=24%  Similarity=0.766  Sum_probs=30.3

Q ss_pred             CcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCC
Q 037216          175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI  222 (379)
Q Consensus       175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l  222 (379)
                      ..|..|--.+.-  ..+.. .|||.||..|+.   .....||-|+..+
T Consensus       841 skCs~C~~~Ldl--P~VhF-~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  841 SKCSACEGTLDL--PFVHF-LCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeecccCCcccc--ceeee-ecccHHHHHhhc---cCcccCCccchhh
Confidence            369999877632  22223 399999999988   4457899998743

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=89.41  E-value=0.28  Score=49.14  Aligned_cols=49  Identities=22%  Similarity=0.542  Sum_probs=34.1

Q ss_pred             CCCcCccccccccCCCc-eeecCCCCCcccHHHHHHHHhc--CCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQ-LRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~-~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~~l~  223 (379)
                      +++-|+.|++++.-.++ ..-.| ||-..|.-|... +++  +..||-||+...
T Consensus        13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~-irq~lngrcpacrr~y~   64 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNN-IRQNLNGRCPACRRKYD   64 (480)
T ss_pred             ccccCcccccccccccCCcccCC-cccHHHHHHHHH-HHhhccCCChHhhhhcc
Confidence            45669999999965553 33445 898777777555 332  568999998543

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=89.09  E-value=0.41  Score=48.62  Aligned_cols=29  Identities=28%  Similarity=0.857  Sum_probs=21.3

Q ss_pred             CCCcccHHHHHHHHhc-------------CCCCCCcCcCCcC
Q 037216          196 CCHAFHARCIDTWLES-------------NLTCPLCRSPIIA  224 (379)
Q Consensus       196 C~H~FH~~Ci~~WL~~-------------~~~CP~CR~~l~~  224 (379)
                      |.-.+|.+|+-+|+..             +-.||+||+...-
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi  352 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI  352 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence            3446789999999853             2269999997643

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.74  E-value=0.19  Score=55.64  Aligned_cols=35  Identities=23%  Similarity=0.575  Sum_probs=27.4

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHH
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWL  209 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL  209 (379)
                      .++.|.+|...+... .-.+-| |||.||++||..-.
T Consensus       816 p~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  816 PQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV  850 (911)
T ss_pred             CccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence            567899998887543 344667 99999999998755

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.86  E-value=0.31  Score=53.29  Aligned_cols=26  Identities=27%  Similarity=0.644  Sum_probs=22.7

Q ss_pred             eecCCCCCcccHHHHHHHHhcCCCCCC
Q 037216          191 RLLPLCCHAFHARCIDTWLESNLTCPL  217 (379)
Q Consensus       191 ~~Lp~C~H~FH~~Ci~~WL~~~~~CP~  217 (379)
                      .... |+|+.|.+|...|+.....||.
T Consensus      1044 ~Cg~-C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGT-CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hhcc-ccccccHHHHHHHHhcCCcCCC
Confidence            3444 9999999999999999999985

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=86.75  E-value=0.38  Score=46.84  Aligned_cols=51  Identities=35%  Similarity=0.803  Sum_probs=36.4

Q ss_pred             CCCcCccccccccCCCc-eeecCCCC-----CcccHHHHHHHHh--cCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQ-LRLLPLCC-----HAFHARCIDTWLE--SNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~-~~~Lp~C~-----H~FH~~Ci~~WL~--~~~~CP~CR~~l~~  224 (379)
                      .+..|-||.++...... .-+.| |.     +..|..|++.|+.  ....|.+|......
T Consensus        77 ~~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~  135 (323)
T KOG1609|consen   77 SGPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN  135 (323)
T ss_pred             CCCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence            34789999997654322 34555 64     4589999999997  45689999885543

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=85.14  E-value=0.23  Score=57.06  Aligned_cols=47  Identities=30%  Similarity=0.623  Sum_probs=37.1

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI  222 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l  222 (379)
                      ....|.||++.+....-  +. .|||.+|..|+..|+..+..||+|....
T Consensus      1152 ~~~~c~ic~dil~~~~~--I~-~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGG--IA-GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             cccchHHHHHHHHhcCC--ee-eechhHhhhHHHHHHHHhccCcchhhhh
Confidence            34589999999853222  22 3999999999999999999999998533

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=84.74  E-value=0.83  Score=39.52  Aligned_cols=6  Identities=33%  Similarity=0.468  Sum_probs=2.3

Q ss_pred             HHHHhh
Q 037216          117 RHLNRR  122 (379)
Q Consensus       117 r~~~rr  122 (379)
                      ...++|
T Consensus        23 ~rRR~r   28 (130)
T PF12273_consen   23 NRRRRR   28 (130)
T ss_pred             HHHHhh
Confidence            333334

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.67  E-value=0.77  Score=46.88  Aligned_cols=47  Identities=17%  Similarity=0.357  Sum_probs=38.4

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC---CCCCCcCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN---LTCPLCRS  220 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~---~~CP~CR~  220 (379)
                      +-..|||=.+.-.+......|. |||+..++-+++..+..   .+||.|-.
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~  382 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPV  382 (394)
T ss_pred             ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence            4678999988887777888898 99999999999955443   36999944

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.09  E-value=0.5  Score=50.49  Aligned_cols=47  Identities=34%  Similarity=0.845  Sum_probs=39.6

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCCcc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATET  227 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~~~  227 (379)
                      ..++|.||+.+.    ..+..+ |.   |..|+.+|+..+..||+|+..+..++.
T Consensus       478 ~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~  524 (543)
T KOG0802|consen  478 PNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDF  524 (543)
T ss_pred             ccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccc
Confidence            567999999987    556666 88   999999999999999999998876643

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=82.39  E-value=1.5  Score=39.51  Aligned_cols=35  Identities=23%  Similarity=0.442  Sum_probs=21.8

Q ss_pred             CCcCccccccccCCCc---------eeecCCCCCc-ccHHHHHHHH
Q 037216          174 GGDCAICLFKFEPHDQ---------LRLLPLCCHA-FHARCIDTWL  209 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~---------~~~Lp~C~H~-FH~~Ci~~WL  209 (379)
                      +..|+|||+--.+..-         +|-.- |+-- =|..|+|++-
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfk   46 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFK   46 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHH
Confidence            4689999987643221         11111 5543 6899999965

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=82.04  E-value=1  Score=44.79  Aligned_cols=46  Identities=26%  Similarity=0.499  Sum_probs=33.0

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      .-.+|+||.+.+...  +..-+ =||..|..|-.+   ..+.||.||.++..
T Consensus        47 ~lleCPvC~~~l~~P--i~QC~-nGHlaCssC~~~---~~~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSPP--IFQCD-NGHLACSSCRTK---VSNKCPTCRLPIGN   92 (299)
T ss_pred             hhccCchhhccCccc--ceecC-CCcEehhhhhhh---hcccCCcccccccc
Confidence            456999999988432  22222 479999999653   46799999999873

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=80.49  E-value=2.6  Score=36.58  Aligned_cols=9  Identities=22%  Similarity=0.268  Sum_probs=3.3

Q ss_pred             HHHHHHHhh
Q 037216          114 LLLRHLNRR  122 (379)
Q Consensus       114 ~l~r~~~rr  122 (379)
                      +|.++++|+
T Consensus        83 li~y~irR~   91 (122)
T PF01102_consen   83 LISYCIRRL   91 (122)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	379
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		4e-11
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		4e-09
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		8e-09
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		6e-07
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		7e-05
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		7e-04

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223
           G +CA+CL + E  ++ R LP C H FHA C+D WL S+ TCPLCR  ++
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223
           CA+CL  F+P D+L + P C HAFH +C+  WLE    CPLC  P++
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVL 63

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRS 220
           C +C+  FE    LR+LP C H FHA+C+D WL++N TCP+CR+
Sbjct: 26  CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 68

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224
           C ICL   E  + +R LP C H FH  C+D WL +N  CP+CR  I A
Sbjct: 17  CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATET 227
           G +C +C   +   + +R LP C H FH  CI  WLE + +CP+CR  +    T
Sbjct: 15  GLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCR 219
           C IC  ++   D    LP C H FH  C+  WL+ + TCP+CR
Sbjct: 43  CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	2e-26
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	3e-25
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	7e-22
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	1e-21
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-20
2ect_A	78	Ring finger protein 126; metal binding protein, st	5e-19
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-18
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	6e-17
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	5e-16
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-15
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	3e-12
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-12
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	2e-11
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-10
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-10
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	7e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-08
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	4e-08
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	6e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	6e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	7e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	5e-07
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	2e-06
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	5e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-04
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	2e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	3e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	4e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	4e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	4e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	6e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	2e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	3e-04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	3e-04
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	4e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	4e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	4e-04
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	6e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	6e-04
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	7e-04
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	8e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  100 bits (250), Expect = 2e-26
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 154 SVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL 213
                LP + F+  +   S    C +C+  FE    LR+LP C H FHA+C+D WL++N 
Sbjct: 4   GSSGQLPSYRFNP-NNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANR 61

Query: 214 TCPLCRSPIIAT 225
           TCP+CR+    +
Sbjct: 62  TCPICRADSGPS 73

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 95.7 bits (239), Expect = 3e-25
 Identities = 25/50 (50%), Positives = 34/50 (68%)

Query: 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223
           G +CA+CL + E  ++ R LP C H FHA C+D WL S+ TCPLCR  ++
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 87.4 bits (217), Expect = 7e-22
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 171 SSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224
             +   C ICL   E  + +R LP C H FH  C+D WL +N  CP+CR  I A
Sbjct: 11  EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 87.4 bits (217), Expect = 1e-21
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 154 SVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL 213
             +D+LP    +           C IC  ++   D    LP C H FH  C+  WL+ + 
Sbjct: 20  ESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSG 78

Query: 214 TCPLCRSPI 222
           TCP+CR   
Sbjct: 79  TCPVCRCMF 87

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 83.7 bits (207), Expect = 2e-20
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 165 SSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223
           S   +  +    CA+CL  F+P D+L + P C HAFH +C+  WLE    CPLC  P++
Sbjct: 6   SGKVKELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVL 63

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 79.8 bits (197), Expect = 5e-19
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATET 227
           SG +C +C   +   + +R LP C H FH  CI  WLE + +CP+CR  +    T
Sbjct: 14  SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 78.4 bits (193), Expect = 2e-18
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 170 RSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222
           R      C  C  + +  D + +   C H+FH  C+  W++ N  CPLC+   
Sbjct: 22  RVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 73.1 bits (180), Expect = 6e-17
 Identities = 16/52 (30%), Positives = 20/52 (38%)

Query: 171 SSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222
           SS    C ICL        +  +  C H  H  C +  L+    CPLC  P 
Sbjct: 2   SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 71.3 bits (175), Expect = 5e-16
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 172 SSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATETDV 229
           +   +C IC+          +LP C H+F  +CID W + +  CP+CR  +       
Sbjct: 13  TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 171 SSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222
           ++    C ICL      +    LP C HAF   CI  W+  N TCPLC+ P+
Sbjct: 2   ATVAERCPICLEDPS--NYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPV 50

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 61.8 bits (149), Expect = 3e-12
 Identities = 13/45 (28%), Positives = 17/45 (37%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSP 221
           C          +      +C HAFH  CI  WL++   CPL    
Sbjct: 54  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 98

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 165 SSVSRRSSSGGDCAICLFKFEPHDQLRLLPL---CCHAFHARCIDTWLESNLTCPLCRSP 221
           S    R S    C IC+  +    Q   L +   C H F ++C+   L++  TCP CR  
Sbjct: 6   SGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 65

Query: 222 I 222
           I
Sbjct: 66  I 66

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 59.9 bits (144), Expect = 2e-11
 Identities = 13/45 (28%), Positives = 17/45 (37%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSP 221
           C          +      +C HAFH  CI  WL++   CPL    
Sbjct: 65  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 109

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 177 CAICLFKFEPHDQLRLLPL---CCHAFHARCIDTWLESNLTCPLCRSPI 222
           C IC+  +    Q   L +   C H F ++C+   L++  TCP CR  I
Sbjct: 6   CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 166 SVSRRSSSGGDCAICLFKFEPHDQLRLLPL---CCHAFHARCIDTWLESNLTCPLCRSPI 222
           +   R S    C IC+  +    Q   L +   C H F ++C+   L++  TCP CR  I
Sbjct: 2   TTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 54.5 bits (131), Expect = 8e-10
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWL-ESNLTCPLCRSPI 222
           C IC+   E     RL P C       CI  WL E    CP CR+P+
Sbjct: 25  CFICM---EKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 54/421 (12%), Positives = 106/421 (25%), Gaps = 139/421 (33%)

Query: 12  SILA----RSQSQHQCM--MIYYLSPMIIHLSVYKRNSPAPD---YSSLFHSFSP--LSS 60
           + +A     S      M   I++L+       +   NSP         L +   P   S 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLN-------LKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 61  SSSLTPPPYDLFTYNNTQHSHHRSLSSMENLKPSLIIIILILAITVFLSISLCL------ 114
           S   +     +    ++  +  R L   +  +  L++                L      
Sbjct: 217 SDHSSNIKLRI----HSIQAELRRLLKSKPYENCLLV----------------LLNVQNA 256

Query: 115 -LLRHLNRRCLRHLSTVTT-----VSSADSRRVSSRRVSPDNPAFSVMDSLPLFAFSSVS 168
                 N  C + L  +TT          +   +   +   +   +  +   L       
Sbjct: 257 KAWNAFNLSC-KIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL----- 308

Query: 169 RRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARC------IDTWLESNLTCPLCRSPI 222
                      C  +  P + L   P                 D W   N          
Sbjct: 309 -------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC--------- 352

Query: 223 IATETDVMKAIHASSGGGSDSFRLEIGSISRRQAGNEPPGEPQRRSYSLGSF-------- 274
                 +   I +S         L              P E ++    L  F        
Sbjct: 353 ----DKLTTIIESS---------LN----------VLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 275 -------DYVVDEESDITTSQIHRGSMSDKEEV-------GAQAASEANLASEVAAGRSW 320
                    V+  +  +  +++H+ S+ +K+               +  L +E A  RS 
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 321 LKDYVDRLSFSVSSRAMSFRSSGRFFTGSSRQSDVGDYDMETNRVGEEISEF------FR 374
           +  Y    +F              F+      S +G + ++     E ++ F      FR
Sbjct: 450 VDHYNIPKTFDSDDLIPP-YLDQYFY------SHIG-HHLKNIEHPERMTLFRMVFLDFR 501

Query: 375 W 375
           +
Sbjct: 502 F 502

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 51/330 (15%), Positives = 95/330 (28%), Gaps = 93/330 (28%)

Query: 3   PFSRDRHVISILARSQSQHQCMMIYYLSP------MIIHLSVYKRNSPAPDYSSLFHSFS 56
           P       +SI+A S          +          II  S+        +Y  +F   S
Sbjct: 327 PR-----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLS 379

Query: 57  PLSSSSSLTPPPYDLFTYNNT--------QHSHHRSLSSMENLKPSLIIIILILAITVFL 108
               S+ +      L  ++             H  SL   +  K S I I          
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-KQPKESTISI---------P 429

Query: 109 SISLCLLLRHLNRRCLRHLSTVTTVSSADSRRVSSRRVSPDNPAFSVMDSLPLFAFSSVS 168
           SI L L ++  N   L H S V      D   +  +    D+     +D    + +S + 
Sbjct: 430 SIYLELKVKLENEYAL-HRSIV------DHYNI-PKTFDSDDLIPPYLDQ---YFYSHIG 478

Query: 169 RRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL----TCPLCRSPIIA 224
                       L   E  +++ L  +    F       +LE  +    T       I+ 
Sbjct: 479 HH----------LKNIEHPERMTLFRMVFLDFR------FLEQKIRHDSTAWNASGSILN 522

Query: 225 TETDVMKAIHASSGGGSDSFRLEIGSISRRQAGNEPPGEPQRRSYSLGSF------DYVV 278
           T                   +     I      N+P  + +R   ++  F      + + 
Sbjct: 523 TLQQ---------------LKFYKPYICD----NDP--KYERLVNAILDFLPKIEENLIC 561

Query: 279 DEESDITTSQIHRGSMSDKEEVGAQAASEA 308
            + +D+    +    M++ E +  +A  + 
Sbjct: 562 SKYTDL----LRIALMAEDEAIFEEAHKQV 587

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 50.9 bits (122), Expect = 7e-09
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 5/47 (10%)

Query: 177 CAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222
           C+IC     +       +  C H F   CI      +  CP C   +
Sbjct: 18  CSICKGYLIDAT----TITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 6/62 (9%)

Query: 163 AFSSVSRRSSSGGD--CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRS 220
           +  S    + S     CAICL   +       LP C H F   C+         C LCR 
Sbjct: 2   SSGSSGNTAPSLTVPECAICL---QTCVHPVSLP-CKHVFCYLCVKGASWLGKRCALCRQ 57

Query: 221 PI 222
            I
Sbjct: 58  EI 59

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 177 CAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222
           C IC   F        ++P C H + + CI  +L     CP C   +
Sbjct: 25  CGICFEYFNIAM----IIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 49.2 bits (117), Expect = 4e-08
 Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 5/49 (10%)

Query: 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPI 222
            C IC        Q +    C    H  C+  + +S     CP C    
Sbjct: 17  ICNIC---HSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 53.3 bits (127), Expect = 6e-08
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 15/73 (20%)

Query: 165 SSVSRRSSSGGDCAICLFKFEPHDQLRLL----PLCCHAFHARCIDTWLESNL------- 213
             +    +    C IC        ++ L+      C    HA C++ W ++ +       
Sbjct: 299 PKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLE 358

Query: 214 ----TCPLCRSPI 222
                CP C++ +
Sbjct: 359 VSFGQCPFCKAKL 371

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 6/47 (12%)

Query: 177 CAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222
           C IC   F  P     +   C H F   C      +   C +C  P 
Sbjct: 18  CFICRQAFQNPV----VTK-CRHYFCESCALEHFRATPRCYICDQPT 59

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 49.4 bits (118), Expect = 7e-08
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 177 CAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222
           C +C   F +       +  C H+F   CI  +LE++  CP+C   +
Sbjct: 18  CVLCGGYFIDAT----TIIECLHSFCKTCIVRYLETSKYCPICDVQV 60

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 19/71 (26%)

Query: 170 RSSSGGDCAICLFKFEPH--------------DQLRLLPLCCHAFHARCIDTWLES---- 211
           + +   DC IC+ K                    +  L  C HAFH  C+     +    
Sbjct: 21  KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD 80

Query: 212 -NLTCPLCRSP 221
            +L CP C++ 
Sbjct: 81  GSLQCPSCKTI 91

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 172 SSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIATE 226
           S+   C IC    E    +++ P C H     C+ +W ES    CP CR  I  TE
Sbjct: 330 STFQLCKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 1/59 (1%)

Query: 165 SSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPI 222
           S          +C +C+   E  D       C +     C        N  CP CR P 
Sbjct: 2   SRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 177 CAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222
           C IC   F E          C H+F + CI+ W++  + CP+CR  I
Sbjct: 67  CIICSEYFIEAV-----TLNCAHSFCSYCINEWMKRKIECPICRKDI 108

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 177 CAICLFKFEPHDQLRLLPL---CCHAFHARCIDTWLESNLTCPLCRSPI 222
           C IC+  +    Q   L +   C H F ++C+   L++  TCP CR  I
Sbjct: 10  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 176 DCAICLFKFEPHDQLRLLPL---CCHAFHARCIDTWLESNLTCPLCRSPI 222
            C IC+  +    Q   L +   C H F ++C+   L++  TCP CR  I
Sbjct: 74  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 165 SSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCC----HAFHARCIDTWLES--NLTCPLC 218
           S  S   SS   C IC  + +    L + P  C    H  H  C+  W++S     C LC
Sbjct: 6   SGTSITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC 64

Query: 219 RSP 221
           +  
Sbjct: 65  KYE 67

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 9/51 (17%)

Query: 177 CAIC--LFKFEPHDQLRLLPLCCHAFHARCIDTWLESN--LTCPLCRSPII 223
           C IC  +   +      ++P C +++   CI T L  +   TCP C    +
Sbjct: 16  CLICKDIMT-DA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 177 CAICLFKFEPHDQL-RLLPLCCHAFHARCIDTWLESN---LTCPLCRSPI 222
           C IC+  F       +LL  C H    +C++  L S+   + CP C    
Sbjct: 18  CPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKIT 66

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 177 CAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSP 221
           C+ C     EP      L  C H F + C+   + +   CP+C +P
Sbjct: 25  CSRCTNILREPV----CLGGCEHIFCSNCVSDCIGTG--CPVCYTP 64

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 9/51 (17%)

Query: 177 CAIC--LFKFEPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPII 223
           C IC  +   +      ++P C +++   CI T L      TCP C    +
Sbjct: 18  CLICKDIMT-DAV----VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222
           C  C          +LLP C H   + C++    S + CP+C++P 
Sbjct: 9   CQQCQ---AEAKCPKLLP-CLHTLCSGCLE---ASGMQCPICQAPW 47

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 5/49 (10%)

Query: 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPI 222
            C IC        Q +    C    H  C+  + +S     CP C    
Sbjct: 182 ICNIC---HSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 7/53 (13%)

Query: 176 DCAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIATE 226
            C  C      P  Q      C H F   C+   L S +  C  C+  I+  +
Sbjct: 17  KCEKCHLVLCSPK-QTE----CGHRFCESCMAALLSSSSPKCTACQESIVKDK 64

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 168 SRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFH-ARCIDTWLESNLTCPLCRSPI 222
           S   ++   C IC     P +   +     H      C     + N  CP+CR PI
Sbjct: 2   SLPLNAIEPCVICQG--RPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 171 SSSGGDCAICLFKFEPHDQLRLLPLCCHAFH-ARCIDTWLESNLTCPLCRSPI 222
            +    C++C     P D   +     H      C     ++  +CP+C+  I
Sbjct: 4   QNLLKPCSLCEK--RPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 5/51 (9%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-SNLTCPLCRSPIIATE 226
           C ICL       Q      C H F   CI   +  +   CP+    ++  +
Sbjct: 21  CPICLMALREAVQTP----CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 177 CAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWL-ESNLTCPLCRSPI 222
           C ICL    E   Q      C H F   CI   + ++   CP+    +
Sbjct: 21  CPICLMALREAV-QTP----CGHRFCKACIIKSIRDAGHKCPVDNEIL 63

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 177 CAICL--FKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIATE 226
           C ICL   K            C H F A CI T L S N  CP CR  +++  
Sbjct: 57  CPICLDMLK-NTM----TTKECLHRFCADCIITALRSGNKECPTCRKKLVSKR 104

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 177 CAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWLE-SNLTCPLCRSPIIATE 226
           C IC     +P     +   C H F   CI   L+     CP CR P   T+
Sbjct: 26  CQICEHILADP-----VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 176 DCAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWLE-SNLTCPLCRSPI 222
            C IC+    EP      LP C H     C  + +E ++L CP CR  +
Sbjct: 17  QCGICMEILVEP----VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRV 60

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 7/49 (14%)

Query: 176 DCAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPI 222
            C  C      P         C H     C+D    +   +CP CR  +
Sbjct: 54  QCICCQELVFRP----ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDL 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.69
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.59
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.48
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.46
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.45
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.43
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.38
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.37
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.33
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.33
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.32
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.31
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.3
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.28
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.24
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.22
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.21
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.21
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.2
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.17
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.17
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.17
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.15
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.13
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.12
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.1
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.09
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.08
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.06
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.06
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.04
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.04
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.02
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.01
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.0
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.99
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.97
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.96
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.96
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.94
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.93
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.87
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.86
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.85
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.82
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.82
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.82
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.78
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.78
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.75
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.75
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.74
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.73
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.69
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.66
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.65
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.61
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.55
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.51
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.5
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.47
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.47
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.36
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.34
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.33
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.24
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.17
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.01
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.87
3nw0_A	238	Non-structural maintenance of chromosomes element	97.76
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	93.07
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	92.68
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	90.71
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	85.8
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	80.15

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.69  E-value=4e-17  Score=131.51  Aligned_cols=79  Identities=28%  Similarity=0.559  Sum_probs=69.9

Q ss_pred             CCCCCCCCHHHHhhCCceeecccccCCCCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          145 RVSPDNPAFSVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       145 r~~~~~l~~~~i~slP~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      .....+++++.|++||.+.+.........+..|+||+++|..++.++.+| |||.||..||+.|+..+.+||+||..+..
T Consensus        11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            44456899999999999999877665556788999999999888899999 99999999999999999999999998754

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=2.7e-16  Score=121.61  Aligned_cols=70  Identities=39%  Similarity=0.910  Sum_probs=59.6

Q ss_pred             HHHhhCCceeecccccCCCCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          154 SVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       154 ~~i~slP~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      +.+++||.+++...... ..+.+|+||+++|..++.++.+| |+|+||..||+.|++.+.+||+||+++...
T Consensus         4 ~~i~~lp~~~~~~~~~~-~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            4 GSSGQLPSYRFNPNNHQ-SEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CCCSSCCCEEBCSSSCS-SSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             hhHhhCCcEEecCcccc-CCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            34678898888765432 35678999999999888889999 999999999999999999999999988654

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.48  E-value=1.8e-14  Score=104.42  Aligned_cols=51  Identities=49%  Similarity=1.148  Sum_probs=46.5

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      .+.+|+||+++|..++.+..++.|||.||..||+.|++.+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            467999999999988888888779999999999999999999999999874

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.46  E-value=6e-14  Score=106.38  Aligned_cols=52  Identities=44%  Similarity=0.991  Sum_probs=47.6

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.|..++.++.++ |||.||..||..|+..+.+||+||..+...
T Consensus        13 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           13 TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             CCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            5678999999998888889999 999999999999999999999999988654

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=4.9e-14  Score=108.34  Aligned_cols=52  Identities=44%  Similarity=1.043  Sum_probs=47.7

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      .+.+|+||+++|..+..+++++ |+|.||..||..|++.+.+||+||.++...
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL   65 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred             CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence            5679999999999888888999 999999999999999999999999988653

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.43  E-value=6.8e-14  Score=108.59  Aligned_cols=52  Identities=38%  Similarity=0.958  Sum_probs=47.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      .+.+|+||++.|..++.+++++ |||.||..||..|++.+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (78)
T 2ect_A           14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ   65 (78)
T ss_dssp             SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred             CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence            5679999999999888888898 999999999999999999999999998765

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.3e-13  Score=108.76  Aligned_cols=53  Identities=30%  Similarity=0.750  Sum_probs=42.8

Q ss_pred             CCCcCccccccccC-----------CCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEP-----------HDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~-----------~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      .+..|+||+++|..           ++.++.++.|||+||.+||+.||..+.+||+||+++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            45678888887753           445666666999999999999999999999999987643

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.37  E-value=3.5e-13  Score=97.40  Aligned_cols=50  Identities=32%  Similarity=0.798  Sum_probs=43.6

Q ss_pred             CCCcCccccccccCCC-ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      .+.+|+||++++..++ .+++++ |||.||..||+.|+..+.+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            4679999999996544 567787 9999999999999999999999999874

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=8.7e-13  Score=99.27  Aligned_cols=51  Identities=27%  Similarity=0.604  Sum_probs=43.4

Q ss_pred             CCCcCccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      ....|+||++.|...    +.+.+++ |||.||..||+.|+..+.+||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            567999999998643    3346787 99999999999999999999999998753

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.33  E-value=8.5e-13  Score=109.56  Aligned_cols=52  Identities=33%  Similarity=0.674  Sum_probs=42.0

Q ss_pred             CCCcCccccccccCCC---------------ceeecCCCCCcccHHHHHHHH-----hcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHD---------------QLRLLPLCCHAFHARCIDTWL-----ESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~---------------~~~~Lp~C~H~FH~~Ci~~WL-----~~~~~CP~CR~~l~~~  225 (379)
                      .+.+|+||+++|..+.               .+++++ |+|+||..||+.||     ..+.+||+||..+...
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            4569999999996543               334677 99999999999999     4467999999987654

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.32  E-value=5.4e-13  Score=101.26  Aligned_cols=52  Identities=27%  Similarity=0.593  Sum_probs=44.6

Q ss_pred             CCCcCccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      .+.+|+||++.+...    +.+..++ |||.||..||+.|+..+.+||+||..+..+
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   64 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred             CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence            567899999998642    4457777 999999999999999999999999988754

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.31  E-value=1.3e-12  Score=108.68  Aligned_cols=51  Identities=31%  Similarity=0.574  Sum_probs=43.1

Q ss_pred             CCCcCccccccccCCC---------------ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHD---------------QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~---------------~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      .++.|+||++.|...-               .+++++ |+|.||..||+.||..+.+||+||+++..
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF  101 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence            5679999999997541               356677 99999999999999999999999998643

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.5e-12  Score=102.95  Aligned_cols=53  Identities=32%  Similarity=0.752  Sum_probs=44.8

Q ss_pred             CCCCCcCccccccccCCCceeecCCCC-----CcccHHHHHHHHhcC--CCCCCcCcCCcCC
Q 037216          171 SSSGGDCAICLFKFEPHDQLRLLPLCC-----HAFHARCIDTWLESN--LTCPLCRSPIIAT  225 (379)
Q Consensus       171 ~~~~~~C~ICl~~~~~~~~~~~Lp~C~-----H~FH~~Ci~~WL~~~--~~CP~CR~~l~~~  225 (379)
                      ...+..|.||+++|..++.+ ++| |+     |.||.+||+.||..+  .+||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            33667999999999877766 688 96     999999999999875  4899999988654

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.28  E-value=1.1e-12  Score=97.18  Aligned_cols=52  Identities=27%  Similarity=0.583  Sum_probs=44.2

Q ss_pred             CCCcCccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      .+.+|+||++.+...    +.+..++ |||.||..||..|+..+.+||+||..+...
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   57 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence            356899999998642    3456777 999999999999999999999999988754

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=3.1e-12  Score=97.73  Aligned_cols=48  Identities=33%  Similarity=0.571  Sum_probs=42.1

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      ....|+||++.+   .....++ |||.||..||..|+..+.+||+||..+..
T Consensus        14 ~~~~C~IC~~~~---~~~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           14 TVPECAICLQTC---VHPVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SCCBCSSSSSBC---SSEEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCccCCccc---CCCEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            567899999998   4456778 99999999999999999999999998754

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.22  E-value=5.7e-12  Score=94.98  Aligned_cols=49  Identities=41%  Similarity=0.897  Sum_probs=42.4

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      .+..|+||++.+.  +....++ |||.||..||..|+..+.+||+||..+..
T Consensus         4 ~~~~C~IC~~~~~--~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPS--NYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCC--SCEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCcccc--CCcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            4679999999985  3357788 99999999999999999999999998753

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=2.4e-12  Score=97.71  Aligned_cols=48  Identities=33%  Similarity=0.937  Sum_probs=42.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.+..    .+++ |||.||..||..|+..+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           14 DEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred             CCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence            56799999999854    6788 999999999999999999999999988754

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=1.1e-11  Score=94.96  Aligned_cols=50  Identities=24%  Similarity=0.410  Sum_probs=41.9

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.+.+  .+.+++ |||.||..||..|+..+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           14 PYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             GGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             CCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence            46789999999853  333347 999999999999999889999999988654

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.5e-11  Score=96.84  Aligned_cols=52  Identities=29%  Similarity=0.675  Sum_probs=44.6

Q ss_pred             CCCcCccccccccCCCc-eeecCCCCCcccHHHHHHHHhcC---CCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQ-LRLLPLCCHAFHARCIDTWLESN---LTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~-~~~Lp~C~H~FH~~Ci~~WL~~~---~~CP~CR~~l~~~  225 (379)
                      ...+|+||++.|...+. .++++ |||.||..||..|+..+   .+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           14 EVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             SCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             CCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            56789999999976654 77888 99999999999999875   7999999987654

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=2.1e-11  Score=95.34  Aligned_cols=47  Identities=23%  Similarity=0.473  Sum_probs=41.4

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      ....|+||++.|.   ...+++ |||.||..||..|+....+||+||..+.
T Consensus        14 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQ---NPVVTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCC---SEEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCcCCCchhc---CeeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            4678999999994   455688 9999999999999998899999999875

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.17  E-value=2.8e-12  Score=108.43  Aligned_cols=51  Identities=31%  Similarity=0.612  Sum_probs=1.2

Q ss_pred             CCCcCccccccccCC-------------C--ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPH-------------D--QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~-------------~--~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      .++.|+||+++|...             +  .+..++ |+|.||..||+.||..+.+||+||+++..
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             CC-----------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence            567999999999642             2  223346 99999999999999999999999998643

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=2.5e-11  Score=92.57  Aligned_cols=49  Identities=29%  Similarity=0.636  Sum_probs=41.4

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh---cCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE---SNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~---~~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.+.   ...+++ |||.||..||..|+.   .+..||+||..+..+
T Consensus        19 ~~~~C~IC~~~~~---~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           19 EEVICPICLDILQ---KPVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCBCTTTCSBCS---SEEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             cCCEeccCCcccC---CeEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            5679999999984   456677 999999999999996   456899999988654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=3e-11  Score=90.80  Aligned_cols=49  Identities=22%  Similarity=0.554  Sum_probs=40.7

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh-cCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-SNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~-~~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.+..   ...++ |||.||..||..|+. .+.+||+||..+..+
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           14 DKYKCEKCHLVLCS---PKQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCEECTTTCCEESS---CCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             cCCCCCCCChHhcC---eeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            56789999999853   34467 999999999999994 567999999988654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.13  E-value=3.1e-11  Score=93.02  Aligned_cols=50  Identities=26%  Similarity=0.539  Sum_probs=41.3

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC--CCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN--LTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~--~~CP~CR~~l~~~  225 (379)
                      ....|+||++.|.   ....++.|||.||..||..|+..+  .+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2yur_A           14 DELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP   65 (74)
T ss_dssp             GGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred             CCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence            4678999999995   345566699999999999999865  6899999976554

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.12  E-value=2.3e-11  Score=104.83  Aligned_cols=48  Identities=33%  Similarity=0.841  Sum_probs=42.3

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      +..|+||++.|   ...+++| |||.||..||..|+..+.+||+||.++...
T Consensus        53 ~~~C~iC~~~~---~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYF---IEAVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBC---SSEEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             cCCCcccCccc---CCceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            45799999999   4567788 999999999999999999999999998654

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=4.9e-11  Score=92.94  Aligned_cols=52  Identities=21%  Similarity=0.431  Sum_probs=43.9

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC--CCCCCcCcCCcCCcc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN--LTCPLCRSPIIATET  227 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~--~~CP~CR~~l~~~~~  227 (379)
                      ...+|+||++.+..++...  . |+|.||..||++||+.+  .+||+||+++..+..
T Consensus        14 ~i~~C~IC~~~i~~g~~C~--~-C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~   67 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCE--T-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP   67 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECS--S-SCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred             CCCcCcchhhHcccCCccC--C-CCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence            4579999999998766554  4 99999999999999887  899999999876543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.09  E-value=1e-10  Score=91.08  Aligned_cols=49  Identities=33%  Similarity=0.610  Sum_probs=41.6

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc------CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES------NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~------~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.+.   ...+++ |||.||..||..|+..      ...||+||..+...
T Consensus        18 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           18 EEVTCPICLELLK---EPVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             TTTSCTTTCSCCS---SCEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             cCCCCcCCChhhC---cceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            5679999999984   344788 9999999999999987      67899999987653

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=9.4e-11  Score=91.29  Aligned_cols=49  Identities=29%  Similarity=0.603  Sum_probs=41.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc------CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES------NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~------~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.+.   ....++ |||.||..||..|+..      ...||+||..+...
T Consensus        18 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           18 EEVTCPICLELLT---QPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCTTTCSCCS---SCBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred             CCCCCCCCCcccC---CceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence            5679999999984   345677 9999999999999987      78999999988653

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.06  E-value=1.2e-10  Score=90.08  Aligned_cols=49  Identities=18%  Similarity=0.450  Sum_probs=42.2

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.|.   ...+++ |||.||..||..|+.. +.+||+||..+...
T Consensus         7 ~~~~C~IC~~~~~---~Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            7 EYFRCPISLELMK---DPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCCS---SEEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             ccCCCCCcccccc---CCEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            5679999999984   456678 9999999999999987 78999999988654

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.06  E-value=4e-11  Score=92.67  Aligned_cols=49  Identities=24%  Similarity=0.502  Sum_probs=41.5

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-------CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-------NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-------~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.|.   ....++ |||.||..||..|+..       ...||+||..+...
T Consensus        11 ~~~~C~IC~~~~~---~p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           11 EEVTCPICLELLT---EPLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCEETTTTEECS---SCCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             cCCCCcCCCcccC---CeeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            5678999999995   345678 9999999999999986       56899999988653

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.8e-10  Score=85.57  Aligned_cols=42  Identities=33%  Similarity=0.699  Sum_probs=36.0

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh---cCCCCCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE---SNLTCPLC  218 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~---~~~~CP~C  218 (379)
                      .+..|+||++.+.   ...+++ |||.||..||..|+.   .+.+||+|
T Consensus        19 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           19 EEVICPICLDILQ---KPVTID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCBCTTTCSBCS---SCEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cCCCCCcCCchhC---CeEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            5679999999984   455677 999999999999998   45689998

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.04  E-value=9.1e-11  Score=95.71  Aligned_cols=48  Identities=33%  Similarity=0.740  Sum_probs=41.0

Q ss_pred             CCCcCccccccccCCCceee-cCCCCCcccHHHHHHHHhcC-CCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRL-LPLCCHAFHARCIDTWLESN-LTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~-Lp~C~H~FH~~Ci~~WL~~~-~~CP~CR~~l~~  224 (379)
                      ....|+||++.|.   ..+. ++ |||.||..||..|+... .+||+||.++..
T Consensus        21 ~~~~C~IC~~~~~---~p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           21 EVFRCFICMEKLR---DARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHTBCTTTCSBCS---SEEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCccCCcccc---CccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            4568999999994   4455 77 99999999999999987 699999998854

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.04  E-value=7.7e-11  Score=99.07  Aligned_cols=52  Identities=27%  Similarity=0.593  Sum_probs=44.5

Q ss_pred             CCCcCccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      +...|+||++.|...    +.++.++ |||.||..||+.|+..+.+||+||..+...
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   61 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred             CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence            567899999998643    4457787 999999999999999999999999988654

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.02  E-value=1.7e-10  Score=93.51  Aligned_cols=48  Identities=25%  Similarity=0.645  Sum_probs=41.0

Q ss_pred             CCCcCccccccccCCCceeec-CCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLL-PLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~L-p~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      ....|+||++.|.   ....+ + |||.||..||..|+..+.+||+||..+..
T Consensus        21 ~~~~C~IC~~~~~---~p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFN---IAMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCS---SEEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhC---CcCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            3568999999995   34445 6 99999999999999988999999998865

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=2.2e-10  Score=83.30  Aligned_cols=42  Identities=31%  Similarity=0.926  Sum_probs=35.2

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh---cCCCCCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE---SNLTCPLC  218 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~---~~~~CP~C  218 (379)
                      ....|+||++.+..   ..+++ |||.||..||..|+.   .+.+||+|
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKE---PVIIE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSS---CCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCc---cEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            56799999999954   45677 999999999999954   46789998

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.00  E-value=2.6e-10  Score=85.38  Aligned_cols=51  Identities=22%  Similarity=0.534  Sum_probs=40.6

Q ss_pred             CCcCccccc-cccCCCce-eecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216          174 GGDCAICLF-KFEPHDQL-RLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~-~~~~~~~~-~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~  225 (379)
                      +..|+||++ .+...... .+++ |||.||..||+.|+.. ...||+||..+...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            568999999 77655433 4567 9999999999999765 46899999988654

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.99  E-value=2.2e-10  Score=94.31  Aligned_cols=49  Identities=29%  Similarity=0.614  Sum_probs=41.9

Q ss_pred             CCCcCccccccccCCCceeec-CCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLL-PLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~L-p~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      .+..|+||++.|.   ....+ + |||.||..||..|+..+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~---~p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFI---DATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCS---SEEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHh---CcCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            4678999999994   34454 7 999999999999999889999999988754

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.97  E-value=1.7e-10  Score=96.86  Aligned_cols=52  Identities=27%  Similarity=0.593  Sum_probs=44.0

Q ss_pred             CCCcCccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.|...    .....++ |||.||..||+.|+..+++||+||.++..+
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            567899999998642    3346777 999999999999999999999999988654

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.96  E-value=3.4e-10  Score=95.45  Aligned_cols=48  Identities=21%  Similarity=0.432  Sum_probs=40.7

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL-TCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~-~CP~CR~~l~~  224 (379)
                      ....|+||++.|.   ....++ |||.||..||..|+..+. .||+||..+..
T Consensus        51 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVF---RPITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCS---SEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHc---CcEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            3568999999994   556778 999999999999998544 89999998865

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.96  E-value=5.6e-10  Score=88.98  Aligned_cols=48  Identities=27%  Similarity=0.553  Sum_probs=40.1

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC--CCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN--LTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~--~~CP~CR~~l~  223 (379)
                      ....|+||++.|.   ...+++.|||.||..||..|+...  ..||+||..+.
T Consensus        12 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           12 DELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             TTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            5678999999995   445666699999999999999753  58999999874

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.94  E-value=5.1e-10  Score=92.02  Aligned_cols=48  Identities=29%  Similarity=0.582  Sum_probs=40.1

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC---CCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL---TCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~---~CP~CR~~l~~~  225 (379)
                      ...|+||++.+.   ....++ |||.||..||..|+..+.   +||+||..+...
T Consensus        21 ~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           21 ILECPICLELIK---EPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             HTSCSSSCCCCS---SCCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCCcccChhhc---CeEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            468999999984   345577 999999999999998654   899999987653

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.93  E-value=5e-10  Score=98.90  Aligned_cols=50  Identities=38%  Similarity=0.687  Sum_probs=40.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.|..  .+.+++ |||.||..||..|+.. +..||+||..+...
T Consensus        53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  103 (165)
T 2ckl_B           53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVSK  103 (165)
T ss_dssp             HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred             CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence            34589999999953  343447 9999999999999987 77899999988643

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.87  E-value=1.3e-09  Score=95.51  Aligned_cols=49  Identities=20%  Similarity=0.448  Sum_probs=41.4

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL-TCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~-~CP~CR~~l~~~  225 (379)
                      ....|+||++.|   ....+++ |||.||..||..|+.... .||+||..+...
T Consensus        77 ~~~~C~IC~~~~---~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELV---YQPVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBC---SSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhh---cCCEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            346899999998   4455688 999999999999998754 899999988765

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.86  E-value=1.1e-09  Score=91.63  Aligned_cols=49  Identities=27%  Similarity=0.591  Sum_probs=41.6

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL-TCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~-~CP~CR~~l~~~  225 (379)
                      ....|+||++.+.   ....++ |||.||..||..|+.... +||+||..+...
T Consensus        17 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           17 SKYECPICLMALR---EAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             GGGBCTTTCSBCS---SEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCcCChhhc---CeEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            5678999999984   446677 999999999999998765 999999988654

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.85  E-value=1.1e-09  Score=82.47  Aligned_cols=47  Identities=26%  Similarity=0.479  Sum_probs=39.9

Q ss_pred             CCCcCccccccccCCCceeec--CCCCCc-ccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLL--PLCCHA-FHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~L--p~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      .+.+|+||++.+   ....++  | |||. |+..|+..|...+..||+||+++.
T Consensus         7 ~~~~C~IC~~~~---~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRP---KNGCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSC---SCEEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCC---CCEEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            456899999887   444455  8 9999 899999999998899999999874

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.82  E-value=1.8e-09  Score=89.80  Aligned_cols=48  Identities=31%  Similarity=0.569  Sum_probs=40.9

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~  225 (379)
                      ...|+||++.+.   ....++ |||.||..||..|+.. ..+||+||..+...
T Consensus        23 ~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           23 SISCQICEHILA---DPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (116)
T ss_dssp             HTBCTTTCSBCS---SEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCcHhc---CcEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence            568999999984   455677 9999999999999987 67999999987653

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.82  E-value=5.9e-10  Score=92.64  Aligned_cols=48  Identities=31%  Similarity=0.750  Sum_probs=40.5

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~  224 (379)
                      .+..|+||++.|.   ..+.++ |||.||..||..|+.. +..||+||..+..
T Consensus        14 ~~~~C~iC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           14 SECQCGICMEILV---EPVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHBCTTTCSBCS---SCEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCccCCcccC---ceeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            3568999999984   456678 9999999999999976 6689999998753

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.82  E-value=3.8e-09  Score=82.84  Aligned_cols=52  Identities=23%  Similarity=0.466  Sum_probs=40.4

Q ss_pred             CCCcCccccccccCCC-ceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~  225 (379)
                      .+..|+||++++...+ .+.-++ |||.||..|+..++.. +..||+||.++...
T Consensus        10 ~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A           10 DPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred             cCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence            5678999999986433 222345 9999999999998743 56899999988654

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.78  E-value=3.1e-09  Score=106.31  Aligned_cols=49  Identities=31%  Similarity=0.743  Sum_probs=42.4

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh-cCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-SNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~-~~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.+   ..+..+| |||.||..|+..|+. .+.+||+||.++...
T Consensus       331 ~~~~C~ICle~~---~~pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          331 TFQLCKICAEND---KDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSSBCTTTSSSB---CCEEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCCccCcCC---CCeEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            346899999998   5577888 999999999999998 678999999988653

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.78  E-value=5.1e-09  Score=83.12  Aligned_cols=49  Identities=14%  Similarity=0.026  Sum_probs=43.5

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ....|+||++-|   ....+++ |||.|++.||..|+..+.+||+||.++...
T Consensus        13 ~~~~CpI~~~~m---~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           13 DEFRDPLMDTLM---TDPVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             TTTBCTTTCSBC---SSEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             hheECcccCchh---cCCeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            578999999999   5667888 999999999999999889999999987643

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.75  E-value=2.8e-09  Score=79.94  Aligned_cols=47  Identities=17%  Similarity=0.412  Sum_probs=39.3

Q ss_pred             CCCcCccccccccCCCceeec--CCCCCc-ccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLL--PLCCHA-FHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~L--p~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      .+..|.||++..   ....++  | |||. |+..|+..|...+..||+||+++.
T Consensus         6 ~~~~C~IC~~~~---~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRP---RDGNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSB---SCEEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcC---CCeEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            456899999876   333344  8 9998 999999999988889999999874

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.75  E-value=6.3e-09  Score=85.26  Aligned_cols=49  Identities=14%  Similarity=0.037  Sum_probs=43.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.|   ....+++ |||.|++.||..|+..+.+||+||.++...
T Consensus        28 ~~~~CpI~~~~m---~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           28 DEFRDPLMDTLM---TDPVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             TTTBCTTTCSBC---SSEEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             HhhCCcCccCcc---cCCeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            578999999999   5667888 999999999999999889999999988654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.74  E-value=8.1e-09  Score=84.30  Aligned_cols=49  Identities=22%  Similarity=0.141  Sum_probs=43.5

Q ss_pred             CCCcCccccccccCCCceeecCCCC-CcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCC-HAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~-H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      .+..|+||++.|   ....+++ || |.|++.||..||..+.+||+||.++...
T Consensus        21 ~~~~CpI~~~~m---~dPV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           21 DEFLDPIMSTLM---CDPVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             TTTBCTTTCSBC---SSEEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             HhcCCcCccccc---cCCeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            578999999999   5666788 99 9999999999999888999999988654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.73  E-value=3.3e-09  Score=92.07  Aligned_cols=49  Identities=20%  Similarity=0.379  Sum_probs=40.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL-TCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~-~CP~CR~~l~~~  225 (379)
                      ....|+||++.+.   ....++ |||.||..||..|+.... +||+||.++..+
T Consensus        30 ~~~~C~IC~~~~~---~pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   79 (141)
T 3knv_A           30 AKYLCSACRNVLR---RPFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE   79 (141)
T ss_dssp             GGGBCTTTCSBCS---SEEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred             cCcCCCCCChhhc---CcEECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence            5679999999984   345577 999999999999998654 899999987543

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.69  E-value=5.2e-09  Score=76.43  Aligned_cols=46  Identities=26%  Similarity=0.673  Sum_probs=38.4

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ....|+||++.|.   ..++++ |||.||..||..|   ...||+||+.+...
T Consensus         5 ~~~~C~IC~~~~~---~p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            5 QFLRCQQCQAEAK---CPKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCSSCSSSCSSCB---CCSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             cCCCceEeCCccC---CeEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            4568999999995   457788 9999999999883   56899999987654

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.66  E-value=7e-09  Score=80.01  Aligned_cols=44  Identities=25%  Similarity=0.597  Sum_probs=37.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      .+..|+||++.+   ....++| |||. ||..|+..|    ..||+||..+..
T Consensus        23 ~~~~C~iC~~~~---~~~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRN---IAIVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSB---CCEEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCC---CCEEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            356899999987   5677888 9999 999999998    799999998753

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.65  E-value=5.6e-09  Score=87.22  Aligned_cols=46  Identities=24%  Similarity=0.564  Sum_probs=39.1

Q ss_pred             CCCcCccccccccCCCceeec-CCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLL-PLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~L-p~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      ....|+||++.|.   ...++ + |||.||..||..|+.  ..||+||..+..
T Consensus        21 ~~~~C~IC~~~~~---~pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (117)
T 1jm7_B           21 KLLRCSRCTNILR---EPVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (117)
T ss_dssp             HTTSCSSSCSCCS---SCBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             hCCCCCCCChHhh---CccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence            4578999999994   45566 7 999999999999997  789999998854

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.61  E-value=1.1e-08  Score=100.40  Aligned_cols=53  Identities=21%  Similarity=0.539  Sum_probs=40.8

Q ss_pred             CCCcCccccccccCCCce----eecCCCCCcccHHHHHHHHhcC-----------CCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQL----RLLPLCCHAFHARCIDTWLESN-----------LTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~----~~Lp~C~H~FH~~Ci~~WL~~~-----------~~CP~CR~~l~~~  225 (379)
                      ...+|+||++.+.++..+    ...+.|+|.||..||.+||+..           .+||.||++|..+
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            567999999999873322    1223499999999999999752           4699999988754

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=4.8e-08  Score=74.41  Aligned_cols=44  Identities=30%  Similarity=0.707  Sum_probs=37.7

Q ss_pred             CCCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      ....|.||++..   ..+.++| |||. ||..|+..    ...||+||.++..
T Consensus        14 ~~~~C~IC~~~~---~~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           14 NSKDCVVCQNGT---VNWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CSSCCSSSSSSC---CCCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCcCcCC---CCEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            567899998876   5678899 9999 99999884    5799999998865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.55  E-value=3.2e-08  Score=92.93  Aligned_cols=48  Identities=17%  Similarity=0.167  Sum_probs=41.3

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC-CCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN-LTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~-~~CP~CR~~l~~  224 (379)
                      ....|+||++.|   ...+++| |||.||+.||..|+..+ .+||+||.++..
T Consensus       207 ~~~~c~i~~~~~---~dPv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          207 DYLCGKISFELM---REPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             STTBCTTTCSBC---SSEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cccCCcCcCCHh---cCCeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            567899999999   5667888 99999999999999864 459999998854

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=4.4e-08  Score=78.97  Aligned_cols=46  Identities=26%  Similarity=0.477  Sum_probs=38.3

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC------CCCCC--cCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN------LTCPL--CRSP  221 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~------~~CP~--CR~~  221 (379)
                      ....|+||++.|   ....+++.|||.|++.||..||..+      .+||+  |+..
T Consensus         6 ~~~~CPI~~~~~---~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEEM---KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSBC---SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCchh---cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            467899999999   4556664599999999999999764      48999  9876

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=5.6e-08  Score=74.92  Aligned_cols=43  Identities=26%  Similarity=0.613  Sum_probs=36.2

Q ss_pred             CCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      +..|+||++.+   ..+.++| |||. ||..|+..    ...||+||.++..
T Consensus        25 ~~~C~IC~~~~---~~~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRN---IAIVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSC---CCBCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCcCCCCC---CCEEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence            45899999987   5567788 9999 99999965    4799999998854

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.47  E-value=5.7e-08  Score=85.94  Aligned_cols=49  Identities=27%  Similarity=0.608  Sum_probs=41.2

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC-CCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN-LTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~-~~CP~CR~~l~~~  225 (379)
                      ....|+||++.+.   ....++ |||.||..||..|+... .+||+||..+...
T Consensus        17 ~~~~C~IC~~~~~---~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           17 SKYECPICLMALR---EAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             GGGBCTTTCSBCS---SEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCChhhc---CcEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            5679999999984   445677 99999999999999764 4999999988654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.47  E-value=1.2e-07  Score=70.67  Aligned_cols=47  Identities=26%  Similarity=0.574  Sum_probs=37.0

Q ss_pred             CCCcCccccccccCCCceeecCCCC--C---cccHHHHHHHHhc--CCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCC--H---AFHARCIDTWLES--NLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~--H---~FH~~Ci~~WL~~--~~~CP~CR~~l~  223 (379)
                      ....|.||+++.  ++.+ ++| |.  |   .||..|++.|+..  +.+||+||..+.
T Consensus         5 ~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            467899999984  2334 677 65  4   8999999999975  578999998764

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.36  E-value=1.1e-07  Score=74.43  Aligned_cols=43  Identities=26%  Similarity=0.577  Sum_probs=36.8

Q ss_pred             CCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      +..|.||++.+   ..+.++| |||. ||..|+..|    ..||+||.++..
T Consensus        18 ~~~C~IC~~~~---~~~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEE---INSTFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSB---CCEEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCEeEEeCccc---CcEEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            46899999887   5677889 9999 999999876    499999998754

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.34  E-value=1.8e-07  Score=75.05  Aligned_cols=48  Identities=21%  Similarity=0.643  Sum_probs=39.3

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc--------CCCCCC--cCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--------NLTCPL--CRSP  221 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--------~~~CP~--CR~~  221 (379)
                      ...+|+||++++...+.+.+.+ |||.||.+|+..++..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4568999999987655555567 9999999999999963        237999  9987

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.33  E-value=2.4e-07  Score=83.63  Aligned_cols=49  Identities=16%  Similarity=0.154  Sum_probs=41.6

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC-CCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN-LTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~-~~CP~CR~~l~~~  225 (379)
                      ....|+||++.|   ....++| |||.|++.||..|+..+ .+||+||.++...
T Consensus       105 ~~f~CPI~~elm---~DPV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          105 DYLCGKISFELM---REPCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             GGGBCTTTCSBC---SSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             HhhcccCccccC---CCCeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            567899999999   4566778 99999999999999874 4699999988643

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.24  E-value=4.2e-07  Score=67.81  Aligned_cols=49  Identities=16%  Similarity=0.190  Sum_probs=40.7

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ...|+||++.+.   ...+++.|||+|.+.||.+||..+.+||+++.++..+
T Consensus         3 ~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            3 HMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             -CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             eEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            368999999995   4456623999999999999999888999999988654

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.17  E-value=3.4e-07  Score=90.47  Aligned_cols=44  Identities=27%  Similarity=0.693  Sum_probs=37.9

Q ss_pred             CCCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      .+..|+||++.+   ..+..+| |||. ||..|+..|    ..||+||.++..
T Consensus       294 ~~~~C~IC~~~~---~~~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKE---VSVVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSB---CCEEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             CCCCCCccCCcC---CceEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            456899999988   5677888 9999 999999987    789999998753

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.01  E-value=1.8e-06  Score=82.11  Aligned_cols=49  Identities=24%  Similarity=0.463  Sum_probs=39.0

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC--CCCCC--cCcCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN--LTCPL--CRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~--~~CP~--CR~~l~~  224 (379)
                      ....|+||++.|.  +.++.+. |||.|++.||..|+..+  .+||+  ||..+..
T Consensus       180 ~el~CPIcl~~f~--DPVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          180 IELTCPITCKPYE--APLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             CCSBCTTTSSBCS--SEEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             eeeECcCccCccc--CCeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            4567999999994  3344345 99999999999999764  47999  9997754

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.87  E-value=7.7e-06  Score=66.72  Aligned_cols=47  Identities=26%  Similarity=0.562  Sum_probs=39.1

Q ss_pred             cCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216          176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT  225 (379)
Q Consensus       176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~  225 (379)
                      -|.+|--++.  ...|++| |+|+||.+|+..|.++ .++||.|+.++..-
T Consensus         3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred             ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence            4888877763  4678999 9999999999999854 68999999988643

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.76  E-value=1.1e-05  Score=75.63  Aligned_cols=50  Identities=22%  Similarity=0.438  Sum_probs=41.2

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC--CCCCcCcCCcCCc
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL--TCPLCRSPIIATE  226 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~--~CP~CR~~l~~~~  226 (379)
                      ...|.||.+-...|..+.   .|+|.||..|+..|++.+.  .||.|+..+....
T Consensus       180 i~~C~iC~~iv~~g~~C~---~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~  231 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI  231 (238)
T ss_dssp             CCBCTTTCSBCSSCEECS---SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred             CCcCcchhhHHhCCcccC---ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence            568999999988765443   3999999999999998754  8999999886653

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=92.68  E-value=0.093  Score=39.37  Aligned_cols=46  Identities=28%  Similarity=0.524  Sum_probs=33.3

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCCCcCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----LTCPLCRSPI  222 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP~CR~~l  222 (379)
                      .+..|.||.+.    ..+..--.|...||..|++..|...    =.||.|....
T Consensus        11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            56689999643    3344444588999999999877653    2799997653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=90.71  E-value=0.15  Score=40.50  Aligned_cols=34  Identities=12%  Similarity=0.251  Sum_probs=25.5

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHH
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTW  208 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~W  208 (379)
                      +..|.||++.+.......-+. |+|.|+..|+..+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence            468999998753333334477 9999999999983

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=85.80  E-value=0.89  Score=35.79  Aligned_cols=34  Identities=18%  Similarity=0.524  Sum_probs=22.5

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHH
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTW  208 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~W  208 (379)
                      .+..|.||- -+..++....-- |+-+||..|+.+-
T Consensus        14 ~D~~C~VC~-~~t~~~l~pCRv-C~RvfH~~CL~r~   47 (89)
T 1wil_A           14 NDEMCDVCE-VWTAESLFPCRV-CTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTTC-CCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred             CCcccCccc-cccccceecccc-ccccccHhhcccc
Confidence            678999994 233323222222 8999999999994

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=80.15  E-value=0.65  Score=41.57  Aligned_cols=49  Identities=22%  Similarity=0.446  Sum_probs=34.7

Q ss_pred             CCcCccccccccCCCc---eeecCCCCCcccHHHHHHH------Hh-----cCCCCCCcCcCC
Q 037216          174 GGDCAICLFKFEPHDQ---LRLLPLCCHAFHARCIDTW------LE-----SNLTCPLCRSPI  222 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~---~~~Lp~C~H~FH~~Ci~~W------L~-----~~~~CP~CR~~l  222 (379)
                      +..|+||...|.+++.   .+..-.|..-||..|+.--      +.     ....||.|+..-
T Consensus         2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            4579999999987762   4444458889999998531      11     157999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	379
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	3e-19
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	4e-13
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	7e-12
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	1e-10
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-10
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-10
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	5e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	8e-09
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	1e-06
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-06
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	6e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	7e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	8e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	8e-04

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 78.4 bits (193), Expect = 3e-19
 Identities = 25/50 (50%), Positives = 34/50 (68%)

Query: 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223
           G +CA+CL + E  ++ R LP C H FHA C+D WL S+ TCPLCR  ++
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 61.5 bits (149), Expect = 4e-13
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 171 SSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222
           ++    C ICL      +    LP C HAF   CI  W+  N TCPLC+ P+
Sbjct: 2   ATVAERCPICLEDPS--NYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 7e-12
 Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 16/62 (25%)

Query: 176 DCAICLFKF---------------EPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRS 220
           +CAIC                        +     C HAFH  CI  WL++   CPL   
Sbjct: 23  NCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNR 81

Query: 221 PI 222
             
Sbjct: 82  EW 83

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 1e-10
 Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-SNLTCPLCRSPI 222
           +C +C+   E  D       C +     C        N  CP CR P 
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 1e-10
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL-TCPLCRSPIIATE 226
           C IC    E    +++ P C H     C+ +W ES    CP CR  I  TE
Sbjct: 26  CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 1e-10
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 176 DCAICLFKFEPHDQLRLLPLCC-HAFHARCIDTWLESN-LTCPLCRSPIIATETDVMKAI 233
            C  C      +  L+L+   C H     C+D         CP C +P+   +++    +
Sbjct: 5   GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL--RKSNFRVQL 62

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 49.9 bits (118), Expect = 5e-09
 Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 3/49 (6%)

Query: 177 CAICLFKFEPHDQLRLLPLCC-HAFHARCIDTWLESN--LTCPLCRSPI 222
           C IC  +                  H  C+ TWL  +    C +C    
Sbjct: 9   CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 8e-09
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATE 226
           C  C          +LLP C H   + C++      + CP+C++P     
Sbjct: 9   CQQCQ---AEAKCPKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 9/63 (14%)

Query: 171 SSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--------NLTCPLCRSPI 222
           SS    C +CL ++       +   C   F   C+  ++E          ++CP    P 
Sbjct: 2   SSGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60

Query: 223 IAT 225
              
Sbjct: 61  QGH 63

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 19/66 (28%)

Query: 176 DCAICLFKFEPH--------------DQLRLLPLCCHAFHARCIDTWLES-----NLTCP 216
           DC IC+ K                    +  L  C HAFH  C+     +     +L CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 217 LCRSPI 222
            C++  
Sbjct: 87  SCKTIY 92

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 6e-06
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN---LTCPLCRSPI 222
           +C ICL   E   +      C H F   C+   L        CPLC++ I
Sbjct: 23  ECPICL---ELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (98), Expect = 7e-06
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 5/51 (9%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIATE 226
           C IC        +      C H F   CI   L+     CP CR P   T+
Sbjct: 26  CQICEHILADPVETS----CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 8e-05
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222
           C+ C            L  C H F + C+   +     CP+C +P 
Sbjct: 25  CSRCTNILREP---VCLGGCEHIFCSNCVSDCI--GTGCPVCYTPA 65

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (80), Expect = 8e-04
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222
           CAI     +   +  L P     F    ++ +++     P+   P+
Sbjct: 3   CAISG---KVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.63
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.4
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.37
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.37
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.33
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.27
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.19
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.04
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.03
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.0
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.87
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.8
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.76
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.74
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.61
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.34
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	87.03
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	81.34

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.63  E-value=6.4e-17  Score=117.54  Aligned_cols=51  Identities=49%  Similarity=1.148  Sum_probs=46.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      ++.+|+||+++|..++.++.++.|+|.||..||++||+.+.+||+||++|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            456899999999999998888779999999999999999999999999875

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.40  E-value=5.5e-14  Score=105.77  Aligned_cols=48  Identities=42%  Similarity=0.908  Sum_probs=42.3

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~  223 (379)
                      ..++|+||++.+.  +.++++| |||.||..||..|++.+.+||+||.++.
T Consensus         4 ~~d~C~IC~~~~~--~~~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           4 VAERCPICLEDPS--NYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCC--SCEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCccCCcCcc--CCcEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            4578999999995  3566788 9999999999999999999999999874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.2e-14  Score=99.60  Aligned_cols=48  Identities=25%  Similarity=0.517  Sum_probs=40.5

Q ss_pred             cCccccccccCCCc-eeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcC
Q 037216          176 DCAICLFKFEPHDQ-LRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIA  224 (379)
Q Consensus       176 ~C~ICl~~~~~~~~-~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~  224 (379)
                      +|+||+++|..++. ++.++ |||.||.+||+.|++. +.+||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~-CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSS-SSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecC-CCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            79999999987664 45566 9999999999999986 4579999998754

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.6e-13  Score=108.26  Aligned_cols=51  Identities=31%  Similarity=0.574  Sum_probs=42.6

Q ss_pred             CCCcCccccccccCCC---------------ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216          173 SGGDCAICLFKFEPHD---------------QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA  224 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~---------------~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~  224 (379)
                      .+++|+||++++....               .+.+++ |||+||..||+.||+.+.+||+||+++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            4668999999886422               245677 99999999999999999999999998754

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=4.2e-13  Score=110.12  Aligned_cols=52  Identities=33%  Similarity=0.616  Sum_probs=41.0

Q ss_pred             CCCcCccccccccCC---------------CceeecCCCCCcccHHHHHHHHhcC-----CCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPH---------------DQLRLLPLCCHAFHARCIDTWLESN-----LTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~---------------~~~~~Lp~C~H~FH~~Ci~~WL~~~-----~~CP~CR~~l~~~  225 (379)
                      .+.+|+||++++...               ..+.+++ |||+||..||+.||...     .+||+||+.+..+
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             ccccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            467899999998542               2345677 99999999999999753     4799999987554

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1e-12  Score=101.65  Aligned_cols=50  Identities=34%  Similarity=0.766  Sum_probs=42.2

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIATE  226 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~~  226 (379)
                      ....|+||++.+   +..+++| |||.||..||..||.. +++||+||..|...+
T Consensus        22 ~~~~C~IC~~~~---~~~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          22 TFQLCKICAEND---KDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             CTTBCTTTSSSB---CCEECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCCccCCCcC---CCeEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            345799999988   5678898 9999999999999975 568999999987543

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.5e-12  Score=97.01  Aligned_cols=52  Identities=21%  Similarity=0.500  Sum_probs=40.8

Q ss_pred             CCCcCccccccccCCC--ceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHD--QLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~--~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~  225 (379)
                      ++..|+||++++..+.  .+.+++ |||.||.+||..|+.. +.+||+||.++...
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            3579999999864333  345566 9999999999999965 56899999987543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=2.5e-12  Score=93.04  Aligned_cols=47  Identities=17%  Similarity=0.227  Sum_probs=40.9

Q ss_pred             cCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      .|+||++.+   +...+++.|||+||++||.+||+++++||+||.++..+
T Consensus         2 ~C~Ic~~~~---~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVP---RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCC---SSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             CCccCCchH---HhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHH
Confidence            599999998   45556666999999999999999999999999988654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=5e-11  Score=93.60  Aligned_cols=47  Identities=32%  Similarity=0.576  Sum_probs=40.3

Q ss_pred             CcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216          175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT  225 (379)
Q Consensus       175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~  225 (379)
                      ..|+||++.+   ....+++ |||.||..||..|++. +.+||+||.++...
T Consensus        24 l~C~IC~~~~---~~pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          24 ISCQICEHIL---ADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (86)
T ss_dssp             TBCTTTCSBC---SSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cCCccCCcch---hcceecC-CCChhhHHHHHHHHhhCCCcCcccCCCCChh
Confidence            5799999998   5567888 9999999999999975 45899999987643

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.1e-11  Score=95.11  Aligned_cols=48  Identities=29%  Similarity=0.582  Sum_probs=39.8

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC---CCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL---TCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~---~CP~CR~~l~~~  225 (379)
                      ...|+||++.|.   ....++ |||.||..||..|+..++   .||+||.++...
T Consensus        21 ~l~CpIC~~~~~---~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (103)
T d1jm7a_          21 ILECPICLELIK---EPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (103)
T ss_dssp             HTSCSSSCCCCS---SCCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CcCCCccCchhC---CeEEcC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCChh
Confidence            357999999984   456678 999999999999997653   799999987543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3.4e-11  Score=87.15  Aligned_cols=45  Identities=27%  Similarity=0.686  Sum_probs=38.1

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ..+|+||++.|.   ..+++| |||.||..||+.|   +.+||+||+++...
T Consensus         6 ~l~C~IC~~~~~---~p~~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T d1bora_           6 FLRCQQCQAEAK---CPKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CSSCSSSCSSCB---CCSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             CCCCcccCcccC---CCEEec-CCCHHhHHHHHcC---CCcCcCCCCcccCC
Confidence            358999999994   567888 9999999999875   56899999998755

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.87  E-value=6.3e-10  Score=80.99  Aligned_cols=51  Identities=22%  Similarity=0.335  Sum_probs=37.0

Q ss_pred             CCCcCccccccccCCCcee-ecCCCCCcccHHHHHHHHhc--CCCCCCcCcCCc
Q 037216          173 SGGDCAICLFKFEPHDQLR-LLPLCCHAFHARCIDTWLES--NLTCPLCRSPII  223 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~-~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~~l~  223 (379)
                      +...|.||++++....... ...+|+|.||..||..|+..  +.+||+||+++.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            4568999999885432211 11125699999999999954  568999999764

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=5.4e-10  Score=88.84  Aligned_cols=47  Identities=23%  Similarity=0.541  Sum_probs=37.5

Q ss_pred             CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      ...|+||++.|..  .+.+.+ |||.||..||..|+.  ..||.||.++...
T Consensus        22 ~l~C~IC~~~~~~--pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (97)
T d1jm7b_          22 LLRCSRCTNILRE--PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (97)
T ss_dssp             TTSCSSSCSCCSS--CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             cCCCccCCchhhc--CceeCC-CCCchhHHHHHHHHh--ccccccCCcCchh
Confidence            4589999999953  333446 999999999999984  5699999987654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=2.4e-09  Score=82.10  Aligned_cols=49  Identities=16%  Similarity=0.180  Sum_probs=41.5

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~  225 (379)
                      ++..|+||++-|   ....+++ |||.|+..||..||.. +.+||+||.++...
T Consensus         6 ~~l~CpIc~~l~---~dPv~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           6 DYLCGKISFELM---REPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             STTBCTTTCSBC---SSEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             ccccCcCcCchh---hhhcccC-CcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            567899999999   4556788 9999999999999975 55899999987643

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.74  E-value=3.6e-09  Score=80.62  Aligned_cols=49  Identities=18%  Similarity=0.440  Sum_probs=41.9

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC-CCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN-LTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~-~~CP~CR~~l~~~  225 (379)
                      .+..|+||++.|   ...++++ |||.|++.||..|+..+ .+||.|+.++...
T Consensus         7 ~~l~CpIc~~~m---~dPV~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           7 EYFRCPISLELM---KDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCC---SSEEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             ccCCCcCcCchh---hCceEcc-CCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            578999999999   4556788 99999999999999764 5799999988654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.8e-08  Score=80.32  Aligned_cols=50  Identities=22%  Similarity=0.109  Sum_probs=42.8

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT  225 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~  225 (379)
                      .+..|+||++-|   ...++++.|||.|++.||..||..+.+||+||.++...
T Consensus        21 ~~f~CPI~~~lm---~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          21 DEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             TTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             HHhCCcCchhHH---HHHHhcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            578999999999   56678883445799999999999999999999998754

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7e-08  Score=75.55  Aligned_cols=46  Identities=20%  Similarity=0.575  Sum_probs=37.0

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC--------CCCCCcC
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN--------LTCPLCR  219 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~--------~~CP~CR  219 (379)
                      ...+|+||++++...+.+++++ |+|.||.+|+..|+..+        -+||.|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            4679999999997666666666 99999999999999631        2599864

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.03  E-value=0.12  Score=34.56  Aligned_cols=44  Identities=36%  Similarity=0.677  Sum_probs=30.2

Q ss_pred             cCccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCCCcCc
Q 037216          176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----LTCPLCRS  220 (379)
Q Consensus       176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP~CR~  220 (379)
                      .|.||-..-.. +.+..-..|...||..|++.-+...    -.||.||.
T Consensus         2 ~C~vC~~~~~~-~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCC-CCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            58888765433 3444455588999999998865432    25999975

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.34  E-value=0.83  Score=33.92  Aligned_cols=34  Identities=18%  Similarity=0.549  Sum_probs=23.9

Q ss_pred             CCCcCccccccccCCCceeecCCCCCcccHHHHHHH
Q 037216          173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTW  208 (379)
Q Consensus       173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~W  208 (379)
                      .+..|.|| +-+...+..-.- -|+-+||..|+.+-
T Consensus        14 ~D~mC~vC-~v~t~~~l~pCR-vCtRv~H~~CL~r~   47 (89)
T d1wila_          14 NDEMCDVC-EVWTAESLFPCR-VCTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTT-CCCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred             cCcccccc-Ccccccceecce-eecchhhHHHHHHh
Confidence            67899999 666544432111 28899999999984