Citrus Sinensis ID: 037227

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccccHHHHHcccccHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccccccHHHHHHHcccccHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHcccc
Coil and Loop (DISEMBL)
IISIILLLThgaraspsaapacnsvvnelnpcvpylvkneakpsdsccagvkspmpyqnnKAARQSICECLEAvapmypridnslisgld
Flexible Loop (DISEMBL)
IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVApmypridnslisgld
Low Complexity Region (SEG)
IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD
Disordered region (IsUnstruct)
**SIILLLTHGAR*****APACNSVVNELNPCVPYLVKNE******CCAG*************RQSICECLEAVAPMYPRID********
Disordered Region (DISOPRED)
IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGL*
Disordered Region (DISEMBL)
IISIILLLTHGA********ACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD
Disordered Region (DISPRO)
IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLI*GLD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q40905	138	Probable non-specific lip	N/A	no	0.888	0.579	0.333	3e-07
P82007	116	Non-specific lipid-transf	N/A	no	0.777	0.603	0.368	3e-07
A0AT30	118	Non-specific lipid-transf	N/A	no	0.633	0.483	0.465	5e-07
P10973	92	Non-specific lipid-transf	N/A	no	0.755	0.739	0.382	1e-06
Q43766	118	Non-specific lipid-transf	N/A	no	0.8	0.610	0.361	2e-06
O04404	176	Probable non-specific lip	N/A	no	0.744	0.380	0.343	2e-06
Q9LLR7	115	Non-specific lipid-transf	yes	no	0.922	0.721	0.392	4e-06
P43217	139	Probable non-specific lip	N/A	no	0.744	0.482	0.328	1e-05
Q43871	115	Non-specific lipid-transf	N/A	no	0.677	0.530	0.377	1e-05
Q9ZPW9	116	Non-specific lipid-transf	no	no	0.644	0.5	0.362	1e-05

>sp|Q40905|NLT13_PARJU Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 8   LTHGARASPSAAPA----CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAA 63
            T  A  +P+ AP     C +VV  L PC+P++   E +PS  CC+G K           
Sbjct: 22  WTSSASVAPAPAPGSEETCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQ 81

Query: 64  RQSICECLEAVAPMYPRIDNSLIS 87
           R   CEC++     Y  ID  L+S
Sbjct: 82  RVHACECIQTAMKTYSDIDGKLVS 105

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
Parietaria judaica (taxid: 33127)

>sp|P82007|NLTP1_HELAN Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)

Query: 1  IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNN 60
          +I +  L+ H     PS A  CN V   L PC+PYL ++  KP+ +CCAG K  +     
Sbjct: 13 MIVMAQLMVH-----PSVAITCNDVTGNLTPCLPYL-RSGGKPTPACCAGAKKLLGATRT 66

Query: 61 KAARQSICECLEAVAP 76
          +A R++ C+C +  AP
Sbjct: 67 QADRRTACKCAKTAAP 82

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. Permeabilizes the membrane of fungal spores, inhibits germination of the spores of the fungus F.solani at a concentration of 40 ug/ml. Inhibits the growth of F.solani with an IC(50) of 6.5 ug/ml, weakly inhibits the growth of the fungus A.alternata. Binds oleoyl-CoA.

Helianthus annuus (taxid: 4232)

>sp|A0AT30|NLTP3_LENCU Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 18 AAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA 75
          AA +C +V  +L PC+PYL    A P+DSCCAGVK  +      A RQ+ C CL+  A
Sbjct: 25 AAVSCGTVTGDLAPCIPYLTGG-AGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAA 81

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Lens culinaris (taxid: 3864)

>sp|P10973|NLTPA_RICCO Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%)

Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRI 81
          C  V + L  C+P+L    A PS SCCAGV++        A R++ CEC++A A  +P I
Sbjct: 3  CGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTI 62

Query: 82 DNSLISGL 89
               S L
Sbjct: 63 KQDAASSL 70

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Ricinus communis (taxid: 3988)

>sp|Q43766|NLTP3_HORVU Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%)

Query: 18 AAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPM 77
          AA +C  V + L+PC+ Y   N AKP  +CC+GVK       + A +Q+ C CL+++A  
Sbjct: 25 AAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATS 84

Query: 78 YPRIDNSLISGL 89
             I+   +SG+
Sbjct: 85 IKGINMGKVSGV 96

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|O04404|NLT12_PARJU Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 32/67 (47%)

Query: 21  ACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPR 80
            C +VV  L PC+P++   E +PS  CC+G K           R   CEC++     Y  
Sbjct: 40  TCGTVVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGLQRVHACECIQTAMKTYSD 99

Query: 81  IDNSLIS 87
           ID  L+S
Sbjct: 100 IDGKLVS 106

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Parietaria judaica (taxid: 33127)

>sp|Q9LLR7|NLTP3_ARATH Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 6  LLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQ 65
          L+LT    AS  AA +C +V   L PC  YL K    P  SCCAGVK+          RQ
Sbjct: 11 LVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGGLVP-PSCCAGVKTLNSMAKTTPDRQ 69

Query: 66 SICECLEAVAPMYPRIDNSLISGL 89
            C C+++ A     ++ SL SGL
Sbjct: 70 QACRCIQSTAKSISGLNPSLASGL 93

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|P43217|NLT11_PARJU Probable non-specific lipid-transfer protein (Fragment) OS=Parietaria judaica GN=PMAI PE=1 SV=3

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 32/67 (47%)

Query: 21 ACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPR 80
           C ++V  L PC+P++   E +PS  CC+G K           R   CEC++     Y  
Sbjct: 3  TCGTMVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSD 62

Query: 81 IDNSLIS 87
          ID  L+S
Sbjct: 63 IDGKLVS 69

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Parietaria judaica (taxid: 33127)

>sp|Q43871|NLTP8_HORVU Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 18 AAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPM 77
          AA  C  V + L PC  Y   +   PS  CC+GVK       + A +Q+ C CL++VA  
Sbjct: 25 AAITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGA 84

Query: 78 Y 78
          Y
Sbjct: 85 Y 85

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|Q9ZPW9|NLTP8_ARATH Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 18 AAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA 75
          +A +C+ V+ +L PCV YL      P ++CC GVKS        A +++ C+C+++VA
Sbjct: 24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVA 81

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
255537787	125	Nonspecific lipid-transfer protein A, pu	0.966	0.696	0.471	2e-15
255537785	115	Nonspecific lipid-transfer protein A, pu	0.966	0.756	0.449	8e-15
116780343	126	unknown [Picea sitchensis] gi|116783792|	0.933	0.666	0.314	4e-08
116786912	126	unknown [Picea sitchensis]	0.933	0.666	0.303	8e-08
116782266	126	unknown [Picea sitchensis] gi|224286913|	0.933	0.666	0.303	1e-07
116779450	126	unknown [Picea sitchensis]	0.933	0.666	0.280	9e-07
116790395	126	unknown [Picea sitchensis]	0.933	0.666	0.280	1e-06
255541060	113	Nonspecific lipid-transfer protein A, pu	0.988	0.787	0.348	1e-06
195652867	151	nonspecific lipid-transfer protein 3 pre	0.8	0.476	0.386	2e-06
259490214	123	nonspecific lipid-transfer protein 3 pre	0.8	0.585	0.386	2e-06

>gi|255537787|ref|XP_002509960.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis] gi|223549859|gb|EEF51347.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis]

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 59/89 (66%), Gaps = 2/89 (2%)

Query: 1   IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNN 60
           I++I++L+   A  +P   P CN +VN+LNPCVP+L +N A PS  CC GV+    Y ++
Sbjct: 17  ILTILMLVLGSATGAP--LPPCNMIVNQLNPCVPFLTRNMATPSQMCCNGVRYLANYSSS 74

Query: 61  KAARQSICECLEAVAPMYPRIDNSLISGL 89
           KA R SIC+C+E    M+P +D SLIS L
Sbjct: 75  KADRISICQCIEGSRSMFPLVDFSLISDL 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537785|ref|XP_002509959.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis] gi|223549858|gb|EEF51346.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 2/89 (2%)

Query: 1  IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNN 60
          +++I++L+   A   P   P C  +VN+LNPCVP+L +N A PS +CC GV+    Y ++
Sbjct: 7  LLTILMLILGSAAGDP--LPPCTVIVNQLNPCVPFLTRNVATPSQTCCGGVRYLANYSSS 64

Query: 61 KAARQSICECLEAVAPMYPRIDNSLISGL 89
          K  R SIC+C+E    M+P ID SLIS L
Sbjct: 65 KGDRISICQCIEGSQSMFPLIDFSLISNL 93

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116780343|gb|ABK21641.1| unknown [Picea sitchensis] gi|116783792|gb|ABK23085.1| unknown [Picea sitchensis]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 1   IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNN 60
           ++S+ +++ H       +A +C +V ++L PCV YL   + KP+ +CC GVK      N 
Sbjct: 21  LLSMEMMVMH-----AESAISCGTVTSDLTPCVGYLTSGKGKPTPNCCGGVKKLAGLANT 75

Query: 61  KAARQSICECLEAVAPMYPRIDNSLISGL 89
             AR+++C CL+     +P  +++ +SGL
Sbjct: 76  TPARRAVCGCLKQAYSQFPNANSAAVSGL 104

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116786912|gb|ABK24295.1| unknown [Picea sitchensis]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 1   IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNN 60
           ++S+ +++ H       +A +C +V +++ PCV YL   + KP+ +CC GVK      N 
Sbjct: 21  LLSMEIMVMH-----AESAISCGTVTSDMTPCVGYLTSGKGKPTPNCCGGVKKLAGLANT 75

Query: 61  KAARQSICECLEAVAPMYPRIDNSLISGL 89
             AR+++C CL+     +P  +++ +SGL
Sbjct: 76  TPARRAVCGCLKQAYSQFPNANSAAVSGL 104

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116782266|gb|ABK22438.1| unknown [Picea sitchensis] gi|224286913|gb|ACN41159.1| unknown [Picea sitchensis]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 1   IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNN 60
           ++S+ +++ H       +A +C +V ++L  CV YL   + KP+ SCC GVK      + 
Sbjct: 21  LLSMEMMVMH-----AESAISCGTVTSDLTQCVGYLTSGKGKPTPSCCGGVKKLADLAST 75

Query: 61  KAARQSICECLEAVAPMYPRIDNSLISGL 89
             AR+++C CL+     +P ++++ +SGL
Sbjct: 76  TPARRAVCGCLKQAYSQFPNVNSAAVSGL 104

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779450|gb|ABK21288.1| unknown [Picea sitchensis]

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 1   IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNN 60
           ++S+ +++ H       +A +C +V++++ PCV YL   + KP+ +CC GVK        
Sbjct: 21  LLSMEIMVMH-----AESAVSCGTVISDMTPCVGYLTSGKGKPAPNCCGGVKKLAGLATT 75

Query: 61  KAARQSICECLEAVAPMYPRIDNSLISGL 89
              R+++C CL+      P ++++ +SGL
Sbjct: 76  TPTRRAVCGCLKQAYSQVPNVNSAAVSGL 104

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116790395|gb|ABK25598.1| unknown [Picea sitchensis]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 1   IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNN 60
           ++S+ +++ H       +A +C +V++++ PCV YL   + KP+ +CC GVK        
Sbjct: 21  LLSMEIMVMH-----AESAISCGTVISDMTPCVGYLTSGKGKPAPNCCGGVKKLAGLATT 75

Query: 61  KAARQSICECLEAVAPMYPRIDNSLISGL 89
              R+++C CL+      P ++++ +SGL
Sbjct: 76  TPTRRAVCGCLKQAYSQVPNVNSAAVSGL 104

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541060|ref|XP_002511594.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis] gi|223548774|gb|EEF50263.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%)

Query: 1  IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNN 60
          +IS++++L       P  A  C  V + L  C+P+L    A PS SCCAGV++       
Sbjct: 5  VISMLVVLAIVQFVMPGEAVDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPT 64

Query: 61 KAARQSICECLEAVAPMYPRIDNSLISGL 89
           A R++ CEC++A A  +P I     S L
Sbjct: 65 SADRRAACECIKAAAARFPTIKQDAASSL 93

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195652867|gb|ACG45901.1| nonspecific lipid-transfer protein 3 precursor [Zea mays]

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 2   ISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDS---CCAGVKSPMPYQ 58
           I+++LL+   A  S  A  +C+ V+N+L+PC+P+L    AKPS+S   CC GV++     
Sbjct: 40  IAVVLLVAMLAVQSAVADISCSDVLNDLSPCLPFLQGKAAKPSESNNQCCDGVRTLYAAA 99

Query: 59  NNKAARQSICECLEA 73
           + +  RQ+ C CL+A
Sbjct: 100 DTRPDRQATCRCLKA 114

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259490214|ref|NP_001159077.1| nonspecific lipid-transfer protein 3 precursor [Zea mays] gi|195652859|gb|ACG45897.1| nonspecific lipid-transfer protein 3 precursor [Zea mays]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 2  ISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDS---CCAGVKSPMPYQ 58
          I+++LL+   A  S  A  +C+ V+N+L+PC+P+L    AKPS+S   CC GV++     
Sbjct: 8  IAVVLLVAMLAVQSAVADISCSDVLNDLSPCLPFLQGKAAKPSESNNQCCDGVRTLYAAA 67

Query: 59 NNKAARQSICECLEA 73
          + +  RQ+ C CL+A
Sbjct: 68 DTRPDRQATCRCLKA 82

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:2168474	115	LTP3 "lipid transfer protein 3	0.922	0.721	0.392	3.6e-09
TAIR|locus:2062116	116	AT2G18370 [Arabidopsis thalian	0.688	0.534	0.380	2.6e-08
TAIR|locus:2168459	112	LTP4 "lipid transfer protein 4	0.8	0.642	0.394	1.1e-07
UNIPROTKB|Q84N29	122	LTP3 "Probable non-specific li	0.966	0.713	0.292	1.4e-07
TAIR|locus:2081840	119	LTP12 "lipid transfer protein	0.966	0.731	0.311	4.8e-07
TAIR|locus:2181022	116	AT5G01870 [Arabidopsis thalian	0.811	0.629	0.324	7.8e-07
TAIR|locus:504955533	119	AT4G33355 [Arabidopsis thalian	0.911	0.689	0.366	1e-06
UNIPROTKB|P83434	91	P83434 "Non-specific lipid-tra	0.588	0.582	0.370	1.9e-05
TAIR|locus:2827393	121	AT2G15325 [Arabidopsis thalian	0.833	0.619	0.302	2.4e-05
TAIR|locus:2039366	183	AT2G48130 [Arabidopsis thalian	0.755	0.371	0.28	5.9e-05

TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 33/84 (39%), Positives = 42/84 (50%)

Query:     6 LLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQ 65
             L+LT    AS  AA +C +V   L PC  YL K    P  SCCAGVK+          RQ
Sbjct:    11 LVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGGLVPP-SCCAGVKTLNSMAKTTPDRQ 69

Query:    66 SICECLEAVAPMYPRIDNSLISGL 89
               C C+++ A     ++ SL SGL
Sbjct:    70 QACRCIQSTAKSISGLNPSLASGL 93

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005618 "cell wall" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2062116 AT2G18370 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query:    13 RASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLE 72
             R S SA  +C+ V+ +L PCV YL      P ++CC GVKS        A +++ C+C++
Sbjct:    20 RYSESAI-SCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIK 78

Query:    73 AVA 75
             +VA
Sbjct:    79 SVA 81

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2168459 LTP4 "lipid transfer protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 30/76 (39%), Positives = 38/76 (50%)

Query:    14 ASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEA 73
             AS  AA  C +V + L+PC+ YL K    P   CCAGVK           RQ  C CL++
Sbjct:    19 ASVDAAITCGTVASSLSPCLGYLSKGGVVPPP-CCAGVKKLNGMAQTTPDRQQACRCLQS 77

Query:    74 VAPMYPRIDNSLISGL 89
              A     ++ SL SGL
Sbjct:    78 AAK---GVNPSLASGL 90

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

UNIPROTKB|Q84N29 LTP3 "Probable non-specific lipid-transfer protein 3" [Triticum aestivum (taxid:4565)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query:     1 IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNN 60
             +++ ++L+  G  AS  AA +C  V ++L PCV Y+    +  S  CC+GV+       +
Sbjct:    14 VLAAVVLMMAGREAS--AALSCGQVDSKLAPCVAYVTGRASSISKECCSGVQGLNGLARS 71

Query:    61 KAARQSICECLEAVAPMYPRIDNSLISGL 89
                R+  C CL+++A     I+   +SG+
Sbjct:    72 SPDRKIACRCLKSLATSIKSINMGKVSGV 100

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2081840 LTP12 "lipid transfer protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 28/90 (31%), Positives = 45/90 (50%)

Query:     1 IISIILLLTHGARASPSAAPA-CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQN 59
             II+ +++LT    ASP+ +   C +V + L  C+ YL  +   PS  CC GVKS      
Sbjct:     7 IITCLIVLTI-YMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQ 64

Query:    60 NKAARQSICECLEAVAPMYPRIDNSLISGL 89
                 R+ +CECL+        ++  L++ L
Sbjct:    65 TTPDRKQVCECLKLAGKEIKGLNTDLVAAL 94

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2181022 AT5G01870 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 24/74 (32%), Positives = 40/74 (54%)

Query:     1 IISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNN 60
             ++ + LLL         AA +CN+V   L PCV Y+V+  A P  SCC G++       +
Sbjct:     5 VLPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPY-SCCNGIRMLSKQATS 63

Query:    61 KAARQSICECLEAV 74
              + +Q +C C+++V
Sbjct:    64 ASDKQGVCRCIKSV 77

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504955533 AT4G33355 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 33/90 (36%), Positives = 43/90 (47%)

Query:     1 IISIIL-LLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQN 59
             +I+I+L +  HG       A AC  V   L  C+PYL K    PS  CC G+ S      
Sbjct:    15 VITILLGIAYHGE------AIACPQVNMYLAQCLPYL-KAGGNPSPMCCNGLNSLKAAAP 67

Query:    60 NKAARQSICECLEAVAPMYPRIDNSLISGL 89
              KA RQ  C CL++VA   P I++     L
Sbjct:    68 EKADRQVACNCLKSVANTIPGINDDFAKQL 97

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

UNIPROTKB|P83434 P83434 "Non-specific lipid-transfer protein 1" [Vigna radiata var. radiata (taxid:3916)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query:    22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA 75
             C  V   L  C+ +L K    P  SCC GVK+ +      A R+++C CL+A A
Sbjct:     3 CGQVQGNLAQCIGFLQKGGVVPP-SCCTGVKNILNSSRTTADRRAVCSCLKAAA 55

GO:0005215 "transporter activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IDA

TAIR|locus:2827393 AT2G15325 [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query:     1 IISIILLLTHGARASPSAAPACNSVVNELNPCVPYL-VKNEAKPSDSCCAGVKSPMPYQN 59
             +I+I + ++H    +  +   C    N L PC+ YL    EAKPS  CC+G+        
Sbjct:    10 VIAITIFMSHLNVFTVYSLTPCEEATNLLTPCLRYLWAPPEAKPSPECCSGLDKVNKGVK 69

Query:    60 NKAARQSICECLEAVA 75
                 R  +C CL + A
Sbjct:    70 TYDDRHDMCICLSSEA 85

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2039366 AT2G48130 [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query:     2 ISIILLLTHGARASPSAAPACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNK 61
             ++++  L    +A PS++  C S +  L+PC+ Y+  N   PS  CC+ + S +     K
Sbjct:    12 VALVAALWSVTKAQPSSS--CVSTLTTLSPCLSYITGNSTTPSQPCCSRLDSVI-----K 64

Query:    62 AARQSICECLEAVAP 76
             ++ Q IC  + +  P
Sbjct:    65 SSPQCICSAVNSPIP 79

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	2e-13

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 59.7 bits (145), Expect = 2e-13
 Identities = 24/68 (35%), Positives = 34/68 (50%)

Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRI 81
          C  V + L PC+ YL      PS +CC+GVKS        A RQ+ C CL++ A     +
Sbjct: 3  CGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGL 62

Query: 82 DNSLISGL 89
          +    +GL
Sbjct: 63 NPGRAAGL 70

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.84
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.39
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.28
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.1
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	98.55
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.28
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	97.99

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.84  E-value=9.7e-22  Score=121.99  Aligned_cols=71  Identities=34%  Similarity=0.660  Sum_probs=66.7

Q ss_pred             CCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227           20 PACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD   90 (90)
Q Consensus        20 ~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP   90 (90)
                      ++|.++...|.||++|++|++..|+++||+|++++++.++|+.|||++|+|+++...++++||++|+.+||
T Consensus         1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP   71 (89)
T cd01960           1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLP   71 (89)
T ss_pred             CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhCh
Confidence            47999999999999999998789999999999999999999999999999999988888669999999998

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.39  E-value=6.9e-14  Score=81.23  Aligned_cols=57  Identities=25%  Similarity=0.587  Sum_probs=48.7

Q ss_pred             ccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCC-ChhhhccCC
Q 037227           29 LNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRI-DNSLISGLD   90 (90)
Q Consensus        29 l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~i-n~~~a~~LP   90 (90)
                      |.||++|++|++..|++.||++++++++.     +++++|+++++......++ |.+++.+||
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP   58 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALP   58 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhch
Confidence            68999999987789999999999999853     6789999999876655445 799999987

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.28  E-value=6.1e-13  Score=79.97  Aligned_cols=59  Identities=27%  Similarity=0.538  Sum_probs=46.3

Q ss_pred             chhhhcCccCChHhhhCCC--CCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227           22 CNSVVNELNPCVPYLVKNE--AKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD   90 (90)
Q Consensus        22 C~~v~~~l~pCl~yl~g~~--~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP   90 (90)
                      |..-...|+||++||+|++  ..|++.||++||++        +++  |.|.+.....++.||.+|+.+||
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~--------~~~--C~C~~~~~~~~~~i~~~~a~~Lp   61 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA--------DLP--CLCRYKTSLVLQIIDPDKAVYLP   61 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC--------CcC--CEeeccCCCcccccCHHHHHHHH
Confidence            4444588999999999876  46999999999974        233  88887666555569999999987

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.10  E-value=5.3e-12  Score=78.02  Aligned_cols=59  Identities=29%  Similarity=0.595  Sum_probs=39.3

Q ss_pred             hhcCccCC---hHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhcc-CCCCCCChhhhccCC
Q 037227           25 VVNELNPC---VPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA-PMYPRIDNSLISGLD   90 (90)
Q Consensus        25 v~~~l~pC---l~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~-~~~~~in~~~a~~LP   90 (90)
                      ....|.||   +.|+++ ...|++.||+++|++.+     .|+.++|+.+++.. ..+ ++|.+|+..||
T Consensus        22 c~~~l~~c~~~~~~~~~-~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~-~in~~~a~~Lp   84 (96)
T PF14368_consen   22 CANSLLPCCPCLCYVTG-GPAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGF-GINVTRALALP   84 (96)
T ss_dssp             -HCCCCHH--HHHHHCC------HHHHHHHCC---------HCCHHHCCCC-CCHCHH-CCTCHHHHHHH
T ss_pred             hHHHHhccccchhccCC-CCCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccC-CcCHHHHHHHH
Confidence            35557777   788884 67999999999999863     35779999998776 444 79999998876

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=98.55  E-value=2.3e-08  Score=58.57  Aligned_cols=60  Identities=28%  Similarity=0.669  Sum_probs=44.7

Q ss_pred             chhhhcCccCChHhhhCC--CCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCC--C---CChhhhccCC
Q 037227           22 CNSVVNELNPCVPYLVKN--EAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYP--R---IDNSLISGLD   90 (90)
Q Consensus        22 C~~v~~~l~pCl~yl~g~--~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~--~---in~~~a~~LP   90 (90)
                      |.++...+.+|.+|+++.  ...|+.+||++++.+.         ...|+|........+  .   ++..++.+||
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp   67 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLP   67 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhH
Confidence            677778888999999986  4688899999999986         135777654433222  1   4889998886

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.28  E-value=2.4e-09  Score=65.68  Aligned_cols=56  Identities=27%  Similarity=0.548  Sum_probs=44.1

Q ss_pred             cCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCC----------CCCChhhhccCC
Q 037227           27 NELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMY----------PRIDNSLISGLD   90 (90)
Q Consensus        27 ~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~----------~~in~~~a~~LP   90 (90)
                      ..+.+|.+|++++...|+..||++|+.+        ++++.|..++..+.+.          .+++..+|.+||
T Consensus        13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l--------~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP   78 (90)
T PF00234_consen   13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL--------DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLP   78 (90)
T ss_dssp             SHHHGGHHHHTTSSSHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHhcccccchHHHhHHHHHH--------hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            4599999999997778999999999988        4578888888765542          147777777765

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=97.99  E-value=1.8e-06  Score=51.16  Aligned_cols=52  Identities=21%  Similarity=0.556  Sum_probs=36.6

Q ss_pred             cCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCC-CCChhhhccCC
Q 037227           27 NELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYP-RIDNSLISGLD   90 (90)
Q Consensus        27 ~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~-~in~~~a~~LP   90 (90)
                      +.|.+|++|++++ ..||++||+.+|+-        + .++|+=+++.  .+. -||.++|..||
T Consensus         4 ~~L~~C~~ai~~~-~~Ps~~CC~~Lk~~--------~-~CLC~y~~~p--~l~~~i~~~~A~~l~   56 (66)
T cd01959           4 TQLSPCLPAILGG-SPPSAACCAKLKEQ--------Q-SCLCQYAKNP--SLKQYVNSPNARKVL   56 (66)
T ss_pred             hhcccCHHHHhCC-CCCCHHHHHHHhcC--------C-CCeeeeecCc--cHHhhcCcHHHHHHH
Confidence            4899999999974 68999999999951        1 4666644432  222 37777776653

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
2ljo_A	93	3d Solution Structure Of Lipid Transfer Protein Lc-		2e-05
1be2_A	91	Lipid Transfer Protein Complexed With Palmitate, Nm		7e-04
1mid_A	91	Non-Specific Lipid Transfer Protein 1 From Barley I		7e-04
1fk0_A	93	Structural Basis Of Non-Specific Lipid Binding In M		8e-04

>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2 Length = 93

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMY 78
          A +C +V ++L+PC+ YL      PS  CC GVK  +   N    RQ+ C CL++ A   
Sbjct: 1  AISCGAVTSDLSPCLTYLTGGPG-PSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI 59
Query: 79 PRID 82
           +++
Sbjct: 60 TKLN 63

>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10 Structures Length = 91

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA 75
          C  V +++ PC+ Y V+    PS  CC GV+       +   RQ++C CL+ +A
Sbjct: 3  CGQVDSKMKPCLTY-VQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIA 55

>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl Length = 91

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA 75
          C  V +++ PC+ Y V+    PS  CC GV+       +   RQ++C CL+ +A
Sbjct: 3  CGQVDSKMKPCLTY-VQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIA 55

>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize Lipid-Transfer Protein Complexes With Capric Acid Revealed By High-Resolution X-Ray Crystallography Length = 93

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA 75
          A +C  V + + PC+ Y     + PS  CC+GV+S        A R++ C CL+  A
Sbjct: 1  AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAA 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	8e-14
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	8e-12
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	2e-11
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	2e-11
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	5e-11

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 59.9 bits (145), Expect = 8e-14
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMY 78
          A +C  V + + PC+ Y     + PS  CC+GV+S        A R++ C CL+  A   
Sbjct: 1  AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 79 PRIDNSLISGL 89
            ++    + +
Sbjct: 61 SGLNAGNAASI 71

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score = 54.8 bits (132), Expect = 8e-12
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRI 81
          C  V + L PC+PY+    A P  +CC G+++          RQ+ C CL+ ++   P +
Sbjct: 4  CGQVSSSLAPCIPYVRGGGAVPP-ACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGV 62

Query: 82 DNSLISGL 89
          + +  + L
Sbjct: 63 NPNNAAAL 70

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score = 54.1 bits (130), Expect = 2e-11
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMY 78
          A  C  V + L PC+ YL      P   CC GVK+ +        RQ  C CL++ A   
Sbjct: 1  AITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58

Query: 79 PRIDNSLISGL 89
            I+    +GL
Sbjct: 59 SGINLGKAAGL 69

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score = 54.1 bits (130), Expect = 2e-11
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRI 81
          C  V + + PC+ Y+      PS  CC GVK+      +++ RQS C CL+ +A     +
Sbjct: 3  CGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNL 61

Query: 82 DNSLISGL 89
          +      +
Sbjct: 62 NEDNARSI 69

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 53.0 bits (127), Expect = 5e-11
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRI 81
          C  V   L  C+ +L K    P  SCC GVK+ +      A R+++C CL+A A     I
Sbjct: 3  CGQVQGNLAQCIGFLQKGGVVPP-SCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGI 61

Query: 82 DNSLISGL 89
          + +    L
Sbjct: 62 NPNNAEAL 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.88
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.85
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.84
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.83
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.82
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.79
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.34
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	98.92
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	98.9

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.88  E-value=2.8e-25  Score=138.97  Aligned_cols=71  Identities=32%  Similarity=0.718  Sum_probs=66.8

Q ss_pred             CCCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227           19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD   90 (90)
Q Consensus        19 ~~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP   90 (90)
                      +++|++|...|.||++||+|+ +.|++.||+|+|+|++.++|++|||++|+|+|+.+..+++||.+||++||
T Consensus         1 AisC~~v~~~L~pCl~Yv~g~-~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP   71 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTGG-PGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALP   71 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTS-SCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHhHHHHHcCC-CCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhh
Confidence            589999999999999999984 57999999999999999999999999999999998888789999999997

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.85  E-value=1.3e-23  Score=131.11  Aligned_cols=72  Identities=26%  Similarity=0.592  Sum_probs=67.6

Q ss_pred             CCCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227           19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD   90 (90)
Q Consensus        19 ~~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP   90 (90)
                      +++|+++...|.||++|++|++..|+++||+|||+++++|+|++|||..|+|++..+.++++||+++|.+||
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP   72 (93)
T 1afh_A            1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIP   72 (93)
T ss_dssp             CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred             CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHH
Confidence            478999999999999999997778999999999999999999999999999999988888789999999987

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.84  E-value=3e-23  Score=128.83  Aligned_cols=70  Identities=27%  Similarity=0.596  Sum_probs=65.7

Q ss_pred             CCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227           20 PACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD   90 (90)
Q Consensus        20 ~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP   90 (90)
                      ++|+++...|.||++|++|++. |+++||+|||+|+++|+|++|||..|+|+|+.+.++++||+++|.+||
T Consensus         1 i~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP   70 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIP   70 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHH
T ss_pred             CCHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHH
Confidence            5899999999999999998766 999999999999999999999999999999988888789999999987

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.83  E-value=2.9e-23  Score=129.14  Aligned_cols=70  Identities=31%  Similarity=0.621  Sum_probs=65.2

Q ss_pred             CCCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227           19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD   90 (90)
Q Consensus        19 ~~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP   90 (90)
                      +++|+++...|.||++|++|++. |+ .||+|||+|++.|+|++|||..|+|+|+.+..+++||+++|.+||
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP   70 (91)
T 1t12_A            1 AITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLP   70 (91)
T ss_dssp             CCCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             CCChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHH
Confidence            47899999999999999999777 88 999999999999999999999999999887777789999999987

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.82  E-value=1.6e-22  Score=125.74  Aligned_cols=70  Identities=30%  Similarity=0.590  Sum_probs=65.3

Q ss_pred             CCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227           20 PACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD   90 (90)
Q Consensus        20 ~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP   90 (90)
                      ++|+++...|.||++|++|++. |+++||+++|+|++.|+|++|||..|+|+|+.+.++++||+++|.+||
T Consensus         1 i~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP   70 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALP   70 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred             CCHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHH
Confidence            5799999999999999998665 999999999999999999999999999999988888779999999987

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.79  E-value=5.8e-22  Score=123.38  Aligned_cols=71  Identities=24%  Similarity=0.626  Sum_probs=65.3

Q ss_pred             CCCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227           19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD   90 (90)
Q Consensus        19 ~~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP   90 (90)
                      +++|+++...|.||++|++|++ .|+++||+|||+|+++|+|++|||..|+|++..+.++++||+++|.+||
T Consensus         1 ~~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP   71 (92)
T 2alg_A            1 MITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALP   71 (92)
T ss_dssp             CCCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred             CCChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHH
Confidence            4789999999999999999855 5899999999999999999999999999999887777789999999987

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.34  E-value=1.9e-14  Score=86.46  Aligned_cols=61  Identities=30%  Similarity=0.557  Sum_probs=49.6

Q ss_pred             CCCchhhhcCccCChHhhhCC-CCCCchhhhcccCCCCccCCCcccchhhcccchhc---cCCCCCCChhhhccCC
Q 037227           19 APACNSVVNELNPCVPYLVKN-EAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAV---APMYPRIDNSLISGLD   90 (90)
Q Consensus        19 ~~~C~~v~~~l~pCl~yl~g~-~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~---~~~~~~in~~~a~~LP   90 (90)
                      ..+|+++...|.||++|++++ ...|+++||++||+        .|+  .|.|.+..   +.++ +||.+++..||
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~--------~~~--~ClC~~~~~~~~~~~-gin~~~A~~LP   66 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH--------ADF--ACLCGYKNSPWLGSF-GVDPELASALP   66 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTT--------CCH--HHHHTTTTCHHHHHH-TBCHHHHHHHH
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHh--------cCc--CCcCcccCCcchhhc-CcCHHHHHHHH
Confidence            468999999999999999983 47899999999997        244  67777654   4455 69999999886

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=98.92  E-value=2.8e-11  Score=71.36  Aligned_cols=51  Identities=18%  Similarity=0.411  Sum_probs=39.8

Q ss_pred             cCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhccc--chhccCCCCCCChhhhccCC
Q 037227           27 NELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICEC--LEAVAPMYPRIDNSLISGLD   90 (90)
Q Consensus        27 ~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~C--lk~~~~~~~~in~~~a~~LP   90 (90)
                      +.|.||++||+++ ..||++||++||+           +..|.|  +|+.... ..||.++|.+||
T Consensus         6 ~~L~pC~~~v~~~-~~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~-~~in~~~A~~Lp   58 (69)
T 1l6h_A            6 GQLTVCTGAIAGG-ARPTAACCSSLRA-----------QQGCFCQFAKDPRYG-RYVNSPNARKAV   58 (69)
T ss_dssp             TTHHHHHHHHTTC-CSTTHHHHHHHHH-----------HHHHHHHHTTCSSHH-HHTTTTTGGGCC
T ss_pred             hhcccCHHHHcCC-CCCCHHHHHhhCC-----------CCCCCCccccCcccc-cccCHHHHHHHH
Confidence            4789999999985 5799999999984           257888  6653222 159999999997

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=98.90  E-value=1.8e-11  Score=71.78  Aligned_cols=51  Identities=24%  Similarity=0.451  Sum_probs=39.2

Q ss_pred             cCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhccc--chhccCCCCCCChhhhccCC
Q 037227           27 NELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICEC--LEAVAPMYPRIDNSLISGLD   90 (90)
Q Consensus        27 ~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~C--lk~~~~~~~~in~~~a~~LP   90 (90)
                      +.|.||++||+++ ..||++||++||+           +..|.|  +|+.... ..||.++|.+||
T Consensus         5 ~~L~pC~~~v~~~-~~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~-~~in~~~A~~Lp   57 (67)
T 1n89_A            5 SQLAVCASAILSG-AKPSGECCGNLRA-----------QQGCFCQYAKDPTYG-QYIRSPHARDTL   57 (67)
T ss_dssp             STTHHHHHHHTTC-CCCCHHHHHHHHH-----------HSSHHHHGGGCSTTH-HHHTCHHHHHHH
T ss_pred             hhcccCHHHHcCC-CCCCHHHHHhhCC-----------CCCCCCccccCcccc-cccCHHHHHHHH
Confidence            4789999999985 5799999999984           247888  6653322 158999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	1e-11
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	2e-10

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 53.3 bits (128), Expect = 1e-11
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMY 78
          A +C  V + + PC+ Y     + PS  CC+GV+S        A R++ C CL+  A   
Sbjct: 1  AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 79 PRIDNSLISGL 89
            ++    + +
Sbjct: 61 SGLNAGNAASI 71

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 50.2 bits (120), Expect = 2e-10
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRI 81
          C  V +++ PC+ Y+      PS  CC GV+       +   RQ++C CL+ +A     +
Sbjct: 3  CGQVDSKMKPCLTYVQGG-PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNL 61

Query: 82 DNSLISGL 89
          + +  + +
Sbjct: 62 NLNNAASI 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.88
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.85
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	96.13
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	95.66

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.88  E-value=1.7e-25  Score=138.32  Aligned_cols=72  Identities=26%  Similarity=0.592  Sum_probs=67.8

Q ss_pred             CCCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227           19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD   90 (90)
Q Consensus        19 ~~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP   90 (90)
                      +++|+++...|.||++||+|++..|++.||+|+++|+++++|++|||++|+|+|+.+..+.+||.+|+.+||
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP   72 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIP   72 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhh
Confidence            589999999999999999998889999999999999999999999999999999987776679999999987

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.85  E-value=3e-24  Score=132.20  Aligned_cols=70  Identities=24%  Similarity=0.613  Sum_probs=65.3

Q ss_pred             CCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227           20 PACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD   90 (90)
Q Consensus        20 ~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP   90 (90)
                      ++|++|...|.||++||+|+ ++|++.||+|+++|+++++|+.|||++|+|+|+.+..+++||.+|+++||
T Consensus         1 i~C~~v~~~l~pCl~Yl~g~-~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP   70 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQGG-PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIP   70 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTTC-SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHhhHHHHcCC-CCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhch
Confidence            58999999999999999984 58999999999999999999999999999999987776689999999987

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=96.13  E-value=0.00038  Score=39.19  Aligned_cols=24  Identities=33%  Similarity=0.852  Sum_probs=21.8

Q ss_pred             CccCChHhhhCCCCCCchhhhcccC
Q 037227           28 ELNPCVPYLVKNEAKPSDSCCAGVK   52 (90)
Q Consensus        28 ~l~pCl~yl~g~~~~Ps~~CC~gv~   52 (90)
                      .|.||++-+++ +..||..||.-+|
T Consensus         6 ~L~~C~~Ai~~-g~~PS~~CC~kLk   29 (67)
T d1tuka1           6 QLAVCASAILS-GAKPSGECCGNLR   29 (67)
T ss_dssp             GGGGGHHHHHH-CCCCCHHHHHHHH
T ss_pred             hccccHHHHhc-CCCCcHHHHHHHH
Confidence            69999999998 5589999999988

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.66  E-value=0.00041  Score=39.26  Aligned_cols=28  Identities=29%  Similarity=0.835  Sum_probs=23.5

Q ss_pred             chhhhcCccCChHhhhCCCCCCchhhhcccC
Q 037227           22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVK   52 (90)
Q Consensus        22 C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~   52 (90)
                      |+..  .|.||++-+++ +..||..||.-+|
T Consensus         3 C~p~--~L~~C~~ai~~-g~~PS~~CC~kLk   30 (69)
T d1l6ha_           3 CNAG--QLTVCTGAIAG-GARPTAACCSSLR   30 (69)
T ss_dssp             STTT--THHHHHHHHTT-CCSTTHHHHHHHH
T ss_pred             CChh--hccccHHHHhC-CCCCcHHHHHHHH
Confidence            5444  79999999998 5579999999988