Citrus Sinensis ID: 037230
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 815 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SWB4 | 815 | Poly [ADP-ribose] polymer | yes | no | 0.986 | 0.986 | 0.754 | 0.0 | |
| Q1SGF1 | 799 | Putative poly [ADP-ribose | N/A | no | 0.977 | 0.997 | 0.731 | 0.0 | |
| Q9FK91 | 814 | Poly [ADP-ribose] polymer | yes | no | 0.990 | 0.991 | 0.713 | 0.0 | |
| Q0E0Q3 | 831 | Poly [ADP-ribose] polymer | yes | no | 0.995 | 0.975 | 0.592 | 0.0 | |
| Q9ZP54 | 983 | Poly [ADP-ribose] polymer | no | no | 0.861 | 0.714 | 0.32 | 1e-100 | |
| Q7EYV7 | 977 | Poly [ADP-ribose] polymer | no | no | 0.856 | 0.714 | 0.302 | 4e-97 | |
| Q9ZSV1 | 980 | Poly [ADP-ribose] polymer | N/A | no | 0.855 | 0.711 | 0.293 | 3e-92 | |
| P09874 | 1014 | Poly [ADP-ribose] polymer | yes | no | 0.865 | 0.695 | 0.283 | 3e-69 | |
| Q9R152 | 1013 | Poly [ADP-ribose] polymer | yes | no | 0.866 | 0.696 | 0.283 | 1e-68 | |
| P18493 | 1016 | Poly [ADP-ribose] polymer | yes | no | 0.865 | 0.693 | 0.285 | 2e-68 |
| >sp|Q9SWB4|PARP3_SOYBN Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=PARP3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1301 bits (3366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/807 (75%), Positives = 695/807 (86%), Gaps = 3/807 (0%)
Query: 1 MKVHETRSHAHASSDEEKVMTRKQKAENKTQEATETPPKKTKQENNGNGGHANGKRSGDV 60
MKV ETRSH HA +EEKVMTRKQKAE+K E E PKK K E GH NGK V
Sbjct: 1 MKVQETRSHVHALGEEEKVMTRKQKAESKAHE-VEHSPKKAKVEKED--GHINGKSETGV 57
Query: 61 TAEFEEFCKSIEGQLSAEQMREILELNGQDSSGSDVAVVTKCLDMLFYGPLDKCPVCNGN 120
E++EFCK+ L EQMR+ILE NG DSSGSD+ + +C D+LFYG LDKC VCNG+
Sbjct: 58 AEEYDEFCKATTEHLPLEQMRDILEANGLDSSGSDLEITRRCQDLLFYGALDKCSVCNGS 117
Query: 121 LEFDGKRYSCKGMYSEWSTCTFRTKDPPRKQEPTKLPDSVLNSPISDLAKRYQDPSHRPR 180
LEFDG+RY C+G YSEW++CTF T++PPRKQEP KLPDSV NS SDL K+YQDPSHRP
Sbjct: 118 LEFDGRRYVCRGFYSEWASCTFSTRNPPRKQEPIKLPDSVQNSLASDLLKKYQDPSHRPH 177
Query: 181 RDVGAAVKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPAERERGG 240
RD+G A KPFTGM ISLMGRL+RTH YW+TTIEKHGGKVA S IG TCLVASPAERERGG
Sbjct: 178 RDLGLAEKPFTGMMISLMGRLTRTHHYWKTTIEKHGGKVANSIIGSTCLVASPAERERGG 237
Query: 241 SSKLVEAMERGTRVVSEAWLIDSIEKQEAQPLEAYDLVTDLAPDSKGIPWDKMDPSEEAI 300
+SKL EAMER VV EAWLIDSIEKQE QPLEAYDLV+DL+ D KGIPWDK DP EEAI
Sbjct: 238 TSKLAEAMERSIPVVREAWLIDSIEKQEPQPLEAYDLVSDLSVDGKGIPWDKQDPGEEAI 297
Query: 301 ESIAAELKLYGKRGVYKDTKLQEQGGKILEKDGILYNCAFSLCDQGRGMNLYCIVQLITV 360
ES++AELKLYGKRGVYKDTKLQEQGGKI E+DGILYNCAFS+CDQGRG+N YC++QLI V
Sbjct: 298 ESLSAELKLYGKRGVYKDTKLQEQGGKIFERDGILYNCAFSVCDQGRGLNDYCVMQLIVV 357
Query: 361 PDSNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEVTGNEFEPWEREKKFQK 420
P++ LHLY+KKG+VGDDPNAEERLEEW VD A+KEFVRLFEE+TGNEFEPWEREKKFQK
Sbjct: 358 PENRLHLYFKKGRVGDDPNAEERLEEWDNVDGALKEFVRLFEEITGNEFEPWEREKKFQK 417
Query: 421 KPLKFYPIDMDDGVEVRHGGLGMRQLGVAAAHSKLDPVVANFMKVLCSQEVYRYALMEMG 480
KPLKFYPIDMDDG+EVRHG LG+RQLG+AA H KL+P+VANFMKVLCSQE+Y+YALMEMG
Sbjct: 418 KPLKFYPIDMDDGIEVRHGALGLRQLGIAATHCKLEPLVANFMKVLCSQEIYKYALMEMG 477
Query: 481 LDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRWFTLMHSLRP 540
D PDLPIGM++N+HL +CE+VL +FI+ VKS KETG KAEA+WTDFS RWFTLMHS RP
Sbjct: 478 YDCPDLPIGMVTNLHLKKCEDVLLEFIDKVKSLKETGPKAEAVWTDFSQRWFTLMHSTRP 537
Query: 541 FIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGSTLDDPLSDCYEKLACSISALEKDS 600
F FRD QEIADHAA++ E VRDIT ASHLIGDM+GST+DDPLS+ Y+KL CSISAL+K S
Sbjct: 538 FNFRDYQEIADHAAAALEGVRDITQASHLIGDMTGSTIDDPLSETYKKLGCSISALDKSS 597
Query: 601 DDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNAQPSLDEIKKLPNKVLLWCGTRS 660
DDY+MIV YLEKTYEPVK+GDIEYGVSV+NIF +++ PS ++I KLPNKVLLWCG+RS
Sbjct: 598 DDYEMIVKYLEKTYEPVKVGDIEYGVSVENIFAVQTGGCPSYEDIIKLPNKVLLWCGSRS 657
Query: 661 SNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVASL 720
SNLLRHLQKGFLPA CSLP+PGYMFG+AIVCSDAAAEAARYGFTA DRPEGFLVLA+ASL
Sbjct: 658 SNLLRHLQKGFLPAICSLPIPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASL 717
Query: 721 GDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSP 780
G+++TELK PPED SLE+KK+GVKG G+KKTDESEHF W DDIKVP G+L+ S+H++SP
Sbjct: 718 GNEITELKTPPEDASSLEEKKVGVKGPGKKKTDESEHFVWKDDIKVPCGKLVASDHQDSP 777
Query: 781 LEYNEYAVYDPKQTSIRFLVGVKFEER 807
LEYNEYAVYD K+ I +LVGVK+EE+
Sbjct: 778 LEYNEYAVYDKKRARISYLVGVKYEEK 804
|
Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks. Glycine max (taxid: 3847) EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 3EC: 0 |
| >sp|Q1SGF1|PARP3_MEDTR Putative poly [ADP-ribose] polymerase 3 OS=Medicago truncatula GN=PARP3 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q9FK91|PARP3_ARATH Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thaliana GN=PARP3 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q0E0Q3|PARP3_ORYSJ Poly [ADP-ribose] polymerase 3 OS=Oryza sativa subsp. japonica GN=PARP3 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9ZP54|PARP1_ARATH Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q7EYV7|PARP1_ORYSJ Poly [ADP-ribose] polymerase 1 OS=Oryza sativa subsp. japonica GN=PARP1 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9ZSV1|PARP1_MAIZE Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP1 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|P09874|PARP1_HUMAN Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4 | Back alignment and function description |
|---|
| >sp|Q9R152|PARP1_CRIGR Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2 SV=3 | Back alignment and function description |
|---|
| >sp|P18493|PARP1_BOVIN Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PARP1 PE=2 SV=2 | Back alignment and function description |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 815 | ||||||
| TAIR|locus:2171137 | 814 | AT5G22470 [Arabidopsis thalian | 0.995 | 0.996 | 0.686 | 1.80000001999e-316 | |
| TAIR|locus:2042511 | 983 | PARP1 "POLY(ADP-RIBOSE) POLYME | 0.797 | 0.661 | 0.300 | 8.1e-76 | |
| UNIPROTKB|P09874 | 1014 | PARP1 "Poly [ADP-ribose] polym | 0.733 | 0.589 | 0.286 | 1.1e-62 | |
| UNIPROTKB|P18493 | 1016 | PARP1 "Poly [ADP-ribose] polym | 0.734 | 0.589 | 0.287 | 3.5e-62 | |
| UNIPROTKB|F1MU08 | 1016 | PARP1 "Poly [ADP-ribose] polym | 0.734 | 0.589 | 0.286 | 9.1e-62 | |
| UNIPROTKB|J9NXE3 | 972 | PARP1 "Uncharacterized protein | 0.730 | 0.612 | 0.288 | 2.3e-60 | |
| UNIPROTKB|F1Q2M3 | 976 | PARP1 "Uncharacterized protein | 0.728 | 0.608 | 0.293 | 3.6e-60 | |
| ZFIN|ZDB-GENE-030131-3955 | 1013 | parp1 "poly (ADP-ribose) polym | 0.732 | 0.589 | 0.265 | 4.2e-60 | |
| RGD|2053 | 1014 | Parp1 "poly (ADP-ribose) polym | 0.732 | 0.588 | 0.283 | 4.4e-60 | |
| UNIPROTKB|I3LDH3 | 1018 | PARP1 "Uncharacterized protein | 0.728 | 0.583 | 0.287 | 1.8e-59 |
| TAIR|locus:2171137 AT5G22470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3035 (1073.4 bits), Expect = 1.8e-316, P = 1.8e-316
Identities = 560/816 (68%), Positives = 662/816 (81%)
Query: 1 MKVHETRSHAHASSDEEKVMTRKQKAENKTQEATETPPKKTKQENNGNGGHANGKRSGDV 60
MKVHETRSHAH S DE+K RK KAE K E+ E KK K EN+ +G NG +GD
Sbjct: 1 MKVHETRSHAHMSGDEQKGNLRKHKAEGKLPES-EQSQKKAKPEND-DGRSVNG--AGDA 56
Query: 61 TAEFEEFCKSIEGQLSAEQMREILELNGQDSSGSDVAVVTKCLDMLFYGPLDKCPVCNGN 120
+E+ EFCK++E LS +Q++E+LE+NGQD S + ++ +C D+LFYG L KCP+C G
Sbjct: 57 ASEYNEFCKAVEENLSIDQIKEVLEINGQDCSAPEETLLAQCQDLLFYGALAKCPLCGGT 116
Query: 121 LEFDG-KRYSCKGMYSEWSTCTFRTKDPPRKQEPTKLPDSVLNSPISDLAKRYQDPSHRP 179
L D KR+ C G SEW +C F TKDPPRK+EP K+PDSV+NS ISDL K++QDP RP
Sbjct: 117 LICDNEKRFVCGGEISEWCSCVFSTKDPPRKEEPVKIPDSVMNSAISDLIKKHQDPKSRP 176
Query: 180 RRDVGAAVKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPAERERG 239
+R++G+A KPF GM ISLMGRL+RTHQYW+ IE++GGKV+ + G+TCLV SPAERERG
Sbjct: 177 KRELGSADKPFVGMMISLMGRLTRTHQYWKKKIERNGGKVSNTVQGVTCLVVSPAERERG 236
Query: 240 GSSKLVEAMERGTRVVSEAWLIDSIEKQEAQPLEAYDLVTDLAPDSKGIPWDKMDPXXXX 299
G+SK+VEAME+G VVSEAWLIDS+EK EAQPLEAYD+V+DL+ + KGIPWDK DP
Sbjct: 237 GTSKMVEAMEQGLPVVSEAWLIDSVEKHEAQPLEAYDVVSDLSVEGKGIPWDKQDPSEEA 296
Query: 300 XXXXXXXLKLYGKRGVYKDTKLQEQGGKILEKDGILYNCAFSLCDQGRGMNLYCIVQLIT 359
LK+YGKRGVY DTKLQE+GGKI EKDG+LYNCAFS+CD G+G N YCI+QL+T
Sbjct: 297 IESFSAELKMYGKRGVYMDTKLQERGGKIFEKDGLLYNCAFSICDLGKGRNEYCIMQLVT 356
Query: 360 VPDSNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEVTGNEFEPWEREKKFQ 419
VPDSNL++Y+K+GKVGDDPNAEERLEEW + AIKEF RLFEE+ GNEFEPWEREKK Q
Sbjct: 357 VPDSNLNMYFKRGKVGDDPNAEERLEEWEDEEAAIKEFARLFEEIAGNEFEPWEREKKIQ 416
Query: 420 KKPLKFYPIDMDDGVEVRHGGLGMRQLGVAAAHSKLDPVVANFMKVLCSQEVYRYALMEM 479
KKP KF+PIDMDDG+EVR G LG+RQLG+A+AH KLD VANF+KVLC QE+Y YALME+
Sbjct: 417 KKPHKFFPIDMDDGIEVRSGALGLRQLGIASAHCKLDSFVANFIKVLCGQEIYNYALMEL 476
Query: 480 GLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRWFTLMHSLR 539
GLD PDLP+GML+++HL RCEEVL +F+E VK+TKETGQKAEA+W DFS+RWF+LMHS R
Sbjct: 477 GLDPPDLPMGMLTDIHLKRCEEVLLEFVEKVKTTKETGQKAEAMWADFSSRWFSLMHSTR 536
Query: 540 PFIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGSTLDDPLSDCYEKLACSISALEKD 599
P D E+ADHAAS+FE VRDI AS LIGDM G TLDDPLSD Y+KL C IS ++K+
Sbjct: 537 PMRLHDVNELADHAASAFETVRDINTASRLIGDMRGDTLDDPLSDRYKKLGCKISVVDKE 596
Query: 600 SDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNAQPSLDEIKKLPNKVLLWCGTR 659
S+DYKM+V YLE TYEPVK+ D+EYGVSV N+F +ES+A PSLD+IKKLPNKVLLWCG+R
Sbjct: 597 SEDYKMVVKYLETTYEPVKVSDVEYGVSVQNVFAVESDAIPSLDDIKKLPNKVLLWCGSR 656
Query: 660 SSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVAS 719
SSNLLRH+ KGFLPA CSLPVPGYMFGRAIVCSDAAAEAARYGFTA DRPEGFLVLAVAS
Sbjct: 657 SSNLLRHIYKGFLPAVCSLPVPGYMFGRAIVCSDAAAEAARYGFTAVDRPEGFLVLAVAS 716
Query: 720 LGDQVTELKKPPEDTKSLEDXXXXXXXXXXXXTDESEHFFWNDDIKVPGGRLIPSEHKNS 779
LG++VTE PPEDTK+LED T+ESEHF W DDIKVP GRL+PSEHK+S
Sbjct: 717 LGEEVTEFTSPPEDTKTLEDKKIGVKGLGRKKTEESEHFMWRDDIKVPCGRLVPSEHKDS 776
Query: 780 PLEYNEYAVYDPKQTSIRFLVGVKFEERGVEMEPAE 815
PLEYNEYAVYDPKQTSIRFLV VK+EE+G E+ E
Sbjct: 777 PLEYNEYAVYDPKQTSIRFLVEVKYEEKGTEIVDVE 812
|
|
| TAIR|locus:2042511 PARP1 "POLY(ADP-RIBOSE) POLYMERASE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P09874 PARP1 "Poly [ADP-ribose] polymerase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P18493 PARP1 "Poly [ADP-ribose] polymerase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MU08 PARP1 "Poly [ADP-ribose] polymerase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9NXE3 PARP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1Q2M3 PARP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-3955 parp1 "poly (ADP-ribose) polymerase family, member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| RGD|2053 Parp1 "poly (ADP-ribose) polymerase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3LDH3 PARP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SWB4 | PARP3_SOYBN | 2, ., 4, ., 2, ., 3, 0 | 0.7546 | 0.9865 | 0.9865 | yes | no |
| Q9FK91 | PARP3_ARATH | 2, ., 4, ., 2, ., 3, 0 | 0.7130 | 0.9901 | 0.9914 | yes | no |
| Q0E0Q3 | PARP3_ORYSJ | 2, ., 4, ., 2, ., 3, 0 | 0.5925 | 0.9950 | 0.9759 | yes | no |
| Q1SGF1 | PARP3_MEDTR | 2, ., 4, ., 2, ., 3, 0 | 0.7319 | 0.9779 | 0.9974 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.2 | 0.983 |
| 3rd Layer | 2.4.2.30 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 815 | |||
| PLN03122 | 815 | PLN03122, PLN03122, Poly [ADP-ribose] polymerase; | 0.0 | |
| PLN03123 | 981 | PLN03123, PLN03123, poly [ADP-ribose] polymerase; | 1e-135 | |
| cd01437 | 347 | cd01437, parp_like, Poly(ADP-ribose) polymerase (p | 1e-114 | |
| pfam00644 | 206 | pfam00644, PARP, Poly(ADP-ribose) polymerase catal | 1e-58 | |
| PLN03124 | 643 | PLN03124, PLN03124, poly [ADP-ribose] polymerase; | 4e-52 | |
| cd08001 | 104 | cd08001, WGR_PARP1_like, WGR domain of poly(ADP-ri | 5e-34 | |
| smart00773 | 84 | smart00773, WGR, Proposed nucleic acid binding dom | 6e-20 | |
| pfam08063 | 55 | pfam08063, PADR1, PADR1 (NUC008) domain | 4e-17 | |
| pfam05406 | 83 | pfam05406, WGR, WGR domain | 6e-13 | |
| cd07997 | 102 | cd07997, WGR_PARP, WGR domain of poly(ADP-ribose) | 6e-09 | |
| pfam00533 | 77 | pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain | 8e-09 | |
| pfam02877 | 130 | pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, | 3e-08 | |
| smart00292 | 78 | smart00292, BRCT, breast cancer carboxy-terminal d | 5e-08 | |
| cd00027 | 72 | cd00027, BRCT, Breast Cancer Suppressor Protein (B | 7e-06 | |
| cd01341 | 137 | cd01341, ADP_ribosyl, ADP_ribosylating enzymes cat | 4e-05 | |
| cd08002 | 100 | cd08002, WGR_PARP3_like, WGR domain of poly(ADP-ri | 4e-05 |
| >gnl|CDD|178669 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
Score = 1444 bits (3741), Expect = 0.0
Identities = 630/815 (77%), Positives = 705/815 (86%), Gaps = 1/815 (0%)
Query: 2 KVHETRSHAHASSDEE-KVMTRKQKAENKTQEATETPPKKTKQENNGNGGHANGKRSGDV 60
KVHETRS AHA + EE K TRKQKAENK E ++P K K++ + G+ NGK + D
Sbjct: 1 KVHETRSQAHAPAAEEGKGGTRKQKAENKEHEGEQSPKKAKKEKKQDDSGNGNGKSAEDA 60
Query: 61 TAEFEEFCKSIEGQLSAEQMREILELNGQDSSGSDVAVVTKCLDMLFYGPLDKCPVCNGN 120
EFEEFCK+IE LS EQMREILE NGQDSSGSD AV+ +C D LFYGPL+KCP+C G
Sbjct: 61 VKEFEEFCKAIEEHLSIEQMREILEENGQDSSGSDDAVLPRCQDQLFYGPLEKCPLCGGA 120
Query: 121 LEFDGKRYSCKGMYSEWSTCTFRTKDPPRKQEPTKLPDSVLNSPISDLAKRYQDPSHRPR 180
LE DG RY+C G SEWS+CTF TK+PPRK+EP K+PDSV NS I+ L K++QDPS RP+
Sbjct: 121 LECDGHRYTCTGFISEWSSCTFSTKNPPRKEEPLKIPDSVKNSFITKLLKKHQDPSKRPK 180
Query: 181 RDVGAAVKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPAERERGG 240
R++GA KPF+GM ISL GRLSRTHQYW+ IEKHGGKVA S G+TCLV SPAERERGG
Sbjct: 181 RELGAPGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSVEGVTCLVVSPAERERGG 240
Query: 241 SSKLVEAMERGTRVVSEAWLIDSIEKQEAQPLEAYDLVTDLAPDSKGIPWDKMDPSEEAI 300
SSK+ EAMERG VV EAWLIDSIEKQEAQPLEAYD+V+DL+ + +GIPWDK DPSEEAI
Sbjct: 241 SSKIAEAMERGIPVVREAWLIDSIEKQEAQPLEAYDVVSDLSVEGRGIPWDKQDPSEEAI 300
Query: 301 ESIAAELKLYGKRGVYKDTKLQEQGGKILEKDGILYNCAFSLCDQGRGMNLYCIVQLITV 360
ES++AELKLYGKRGVYKD+KLQE+GGKI EKDGILYNCAFS+CD GRG+N YCI+QLITV
Sbjct: 301 ESLSAELKLYGKRGVYKDSKLQEEGGKIFEKDGILYNCAFSICDLGRGLNEYCIMQLITV 360
Query: 361 PDSNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEVTGNEFEPWEREKKFQK 420
PDSNLHLYYKKG+VGDDPNAEERLEEW VD AIKEFVRLFEE+TGNEFEPWEREKKF+K
Sbjct: 361 PDSNLHLYYKKGRVGDDPNAEERLEEWEDVDAAIKEFVRLFEEITGNEFEPWEREKKFEK 420
Query: 421 KPLKFYPIDMDDGVEVRHGGLGMRQLGVAAAHSKLDPVVANFMKVLCSQEVYRYALMEMG 480
K LKFYPIDMDDGV+VR GGLG+RQLGVAAAH KLDP VANFMKVLCSQE+YRYA+MEMG
Sbjct: 421 KRLKFYPIDMDDGVDVRAGGLGLRQLGVAAAHCKLDPKVANFMKVLCSQEIYRYAMMEMG 480
Query: 481 LDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRWFTLMHSLRP 540
LD+PDLP+GMLS+ HL RCEEVL +F E VKS KETGQKAEA+W DFSN+WF+L+HS RP
Sbjct: 481 LDSPDLPMGMLSDFHLKRCEEVLLEFAEFVKSEKETGQKAEAMWLDFSNKWFSLVHSTRP 540
Query: 541 FIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGSTLDDPLSDCYEKLACSISALEKDS 600
F+ RD E+ADHAAS+ E VRDI VAS LIGDM+GSTLDDPLSD Y+KL CSIS ++K+S
Sbjct: 541 FVIRDIDELADHAASALETVRDINVASRLIGDMTGSTLDDPLSDRYKKLGCSISPVDKES 600
Query: 601 DDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNAQPSLDEIKKLPNKVLLWCGTRS 660
DDYKMIV YLEKTYEPVK+GD+ Y VSV+NIF +ES+A PSLDEIKKLPNKVLLWCGTRS
Sbjct: 601 DDYKMIVKYLEKTYEPVKVGDVSYSVSVENIFAVESSAGPSLDEIKKLPNKVLLWCGTRS 660
Query: 661 SNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVASL 720
SNLLRHL KGFLPA CSLPVPGYMFG+AIVCSDAAAEAARYGFTA DRPEGFLVLAVASL
Sbjct: 661 SNLLRHLAKGFLPAVCSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAVASL 720
Query: 721 GDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSP 780
GD+V EL KPPED KS E+KK+GVKGLGRKKTDESEHF W DDI VP GRLIPSEHK+SP
Sbjct: 721 GDEVLELTKPPEDVKSYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCGRLIPSEHKDSP 780
Query: 781 LEYNEYAVYDPKQTSIRFLVGVKFEERGVEMEPAE 815
LEYNEYAVYDPKQ SIRFLVGVK+EE+G EM AE
Sbjct: 781 LEYNEYAVYDPKQVSIRFLVGVKYEEKGAEMVTAE 815
|
Length = 815 |
| >gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238717 cd01437, parp_like, Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA | Back alignment and domain information |
|---|
| >gnl|CDD|216040 pfam00644, PARP, Poly(ADP-ribose) polymerase catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|153428 cd08001, WGR_PARP1_like, WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214814 smart00773, WGR, Proposed nucleic acid binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|191934 pfam08063, PADR1, PADR1 (NUC008) domain | Back alignment and domain information |
|---|
| >gnl|CDD|218579 pfam05406, WGR, WGR domain | Back alignment and domain information |
|---|
| >gnl|CDD|153426 cd07997, WGR_PARP, WGR domain of poly(ADP-ribose) polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain | Back alignment and domain information |
|---|
| >gnl|CDD|190460 pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, regulatory domain | Back alignment and domain information |
|---|
| >gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|238651 cd01341, ADP_ribosyl, ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates | Back alignment and domain information |
|---|
| >gnl|CDD|153429 cd08002, WGR_PARP3_like, WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 815 | |||
| PLN03122 | 815 | Poly [ADP-ribose] polymerase; Provisional | 100.0 | |
| PLN03123 | 981 | poly [ADP-ribose] polymerase; Provisional | 100.0 | |
| PLN03124 | 643 | poly [ADP-ribose] polymerase; Provisional | 100.0 | |
| cd01437 | 347 | parp_like Poly(ADP-ribose) polymerase (parp) catal | 100.0 | |
| KOG1037 | 531 | consensus NAD+ ADP-ribosyltransferase Parp, requir | 100.0 | |
| PF00644 | 206 | PARP: Poly(ADP-ribose) polymerase catalytic domain | 100.0 | |
| cd01438 | 223 | tankyrase_like Tankyrases interact with the telome | 100.0 | |
| PF02877 | 133 | PARP_reg: Poly(ADP-ribose) polymerase, regulatory | 99.97 | |
| cd08003 | 103 | WGR_PARP2_like WGR domain of poly(ADP-ribose) poly | 99.97 | |
| cd08001 | 104 | WGR_PARP1_like WGR domain of poly(ADP-ribose) poly | 99.95 | |
| cd08002 | 100 | WGR_PARP3_like WGR domain of poly(ADP-ribose) poly | 99.95 | |
| cd07997 | 102 | WGR_PARP WGR domain of poly(ADP-ribose) polymerase | 99.92 | |
| cd01341 | 137 | ADP_ribosyl ADP_ribosylating enzymes catalyze the | 99.92 | |
| cd01439 | 121 | TCCD_inducible_PARP_like Poly(ADP-ribose) polymera | 99.9 | |
| PF08063 | 55 | PADR1: PADR1 (NUC008) domain; InterPro: IPR012982 | 99.87 | |
| smart00773 | 84 | WGR Proposed nucleic acid binding domain. This dom | 99.75 | |
| PF05406 | 81 | WGR: WGR domain; InterPro: IPR008893 This domain i | 99.71 | |
| cd07994 | 73 | WGR WGR domain. The WGR domain is found in a varie | 99.63 | |
| cd07996 | 74 | WGR_MMR_like WGR domain of molybdate metabolism re | 99.34 | |
| PF00533 | 78 | BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP | 99.11 | |
| PF12738 | 63 | PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W | 98.99 | |
| COG0272 | 667 | Lig NAD-dependent DNA ligase (contains BRCT domain | 98.97 | |
| PRK06063 | 313 | DNA polymerase III subunit epsilon; Provisional | 98.93 | |
| PRK14350 | 669 | ligA NAD-dependent DNA ligase LigA; Provisional | 98.93 | |
| cd00027 | 72 | BRCT Breast Cancer Suppressor Protein (BRCA1), car | 98.93 | |
| smart00292 | 80 | BRCT breast cancer carboxy-terminal domain. | 98.85 | |
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 98.8 | |
| PRK14351 | 689 | ligA NAD-dependent DNA ligase LigA; Provisional | 98.74 | |
| PRK07956 | 665 | ligA NAD-dependent DNA ligase LigA; Validated | 98.67 | |
| TIGR00575 | 652 | dnlj DNA ligase, NAD-dependent. The member of this | 98.6 | |
| COG5275 | 276 | BRCT domain type II [General function prediction o | 98.5 | |
| COG3831 | 85 | Uncharacterized conserved protein [Function unknow | 98.26 | |
| KOG3226 | 508 | consensus DNA repair protein [Replication, recombi | 97.92 | |
| cd07998 | 77 | WGR_DNA_ligase WGR domain of bacterial DNA ligases | 97.88 | |
| KOG1929 | 811 | consensus Nucleotide excision repair factor NEF2, | 97.48 | |
| PRK05601 | 377 | DNA polymerase III subunit epsilon; Validated | 96.54 | |
| KOG1037 | 531 | consensus NAD+ ADP-ribosyltransferase Parp, requir | 96.54 | |
| KOG0966 | 881 | consensus ATP-dependent DNA ligase IV [Replication | 96.42 | |
| KOG1929 | 811 | consensus Nucleotide excision repair factor NEF2, | 95.43 | |
| KOG2043 | 896 | consensus Signaling protein SWIFT and related BRCT | 94.84 | |
| KOG3548 | 1176 | consensus DNA damage checkpoint protein RHP9/CRB2/ | 94.71 | |
| KOG0323 | 635 | consensus TFIIF-interacting CTD phosphatases, incl | 91.09 | |
| COG5163 | 591 | NOP7 Protein required for biogenesis of the 60S ri | 90.4 | |
| KOG2481 | 570 | consensus Protein required for normal rRNA process | 88.47 | |
| KOG3524 | 850 | consensus Predicted guanine nucleotide exchange fa | 85.58 |
| >PLN03122 Poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-214 Score=1860.41 Aligned_cols=813 Identities=78% Similarity=1.257 Sum_probs=751.9
Q ss_pred cccccccccCCC-chhHhhhhHhhHhhhcccccccCCccccccccC-CCCCCccccchHHHHHHHHHHHHHHHhcCCHHH
Q 037230 2 KVHETRSHAHAS-SDEEKVMTRKQKAENKTQEATETPPKKTKQENN-GNGGHANGKRSGDVTAEFEEFCKSIEGQLSAEQ 79 (815)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~q~~~lw~~~d~l~~~~~~~~ 79 (815)
||||||||+||+ ++|+|+|+||||||+|+||+||+ |+|+|+++. +.+++.++++...|+++||+|||+|+++||.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~d~l~~~~s~~~ 79 (815)
T PLN03122 1 KVHETRSQAHAPAAEEGKGGTRKQKAENKEHEGEQS-PKKAKKEKKQDDSGNGNGKSAEDAVKEFEEFCKAIEEHLSIEQ 79 (815)
T ss_pred CcccccccccccchhhhcccchhhhccccccccccC-chhhhhhcccccCCcccccCHHHHHHHHHHHHHHHHhhCCHHH
Confidence 799999999999 99999999999999999999999 888766651 236777778899999999999999999999999
Q ss_pred HHHHHHHhCCCCCCChHHHHHHhhhhhhcCCCCCCCCCCCeeEEeCceeEeecCCcCccccccccCCCCCCCCCccCCcc
Q 037230 80 MREILELNGQDSSGSDVAVVTKCLDMLFYGPLDKCPVCNGNLEFDGKRYSCKGMYSEWSTCTFRTKDPPRKQEPTKLPDS 159 (815)
Q Consensus 80 l~~lL~~N~q~~~~~~~~ll~~~aD~~~fG~l~~Cp~C~g~l~~~~~~Y~C~G~~sewtkC~~~~~~p~R~~~~~kiP~~ 159 (815)
|++||++|+|.++++++.|++||||+|+||+|++||.|+|+|+|++++|+|+|||||||||+|+|++|+|++++|+||++
T Consensus 80 l~~~L~~N~q~~~~~~~~~~~~~aD~m~fG~l~~Cp~C~g~l~~~g~~Y~C~G~iSeWtKC~y~T~~P~R~~~~~kiP~e 159 (815)
T PLN03122 80 MREILEENGQDSSGSDDAVLPRCQDQLFYGPLEKCPLCGGALECDGHRYTCTGFISEWSSCTFSTKNPPRKEEPLKIPDS 159 (815)
T ss_pred HHHHHHHcCCCCCCcHHHHHHHHhHHHhhcCCCCCCCCCCeEEEcCCeeEeccccCCCcccccccCCCCcccCcccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997779999999
Q ss_pred cCCcccchhhcccCCCCCCCccccCCCCCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeeccceeEEEeChHHHhcC
Q 037230 160 VLNSPISDLAKRYQDPSHRPRRDVGAAVKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPAERERG 239 (815)
Q Consensus 160 ~~~~fl~~~~~~~~~~~~~p~r~~~p~~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~~e~~k~ 239 (815)
+++.||++|+++++++..+|.|...|+.+||.|++|+|+|+|+.+|++++++|+++||+|+++|+++||+|++.++++++
T Consensus 160 ~k~~fl~~~k~~~~~~~~~p~~~~~~~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssVs~~T~lIvt~~ev~k~ 239 (815)
T PLN03122 160 VKNSFITKLLKKHQDPSKRPKRELGAPGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSVEGVTCLVVSPAERERG 239 (815)
T ss_pred HHHHHHHHhcccccccccCccccccccCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEccccccceEEEEcCcccccc
Confidence 99889999999888888888887778888999999999999998999999999999999999999777889999888776
Q ss_pred CchhHHHHHHcCCcEechhHHHHHhhhcCCCCCcccccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCccCCCCC
Q 037230 240 GSSKLVEAMERGTRVVSEAWLIDSIEKQEAQPLEAYDLVTDLAPDSKGIPWDKMDPSEEAIESIAAELKLYGKRGVYKDT 319 (815)
Q Consensus 240 ~s~K~~~A~~~gI~IVsed~L~d~~~~~~~l~~~~Y~i~s~~~~~~~~~~~~k~d~~~~~~~s~~~k~k~kg~~~Vd~~s 319 (815)
+++|+++|+++|||||+|+||.+|+..++.+++.+|.+.++...+++..||.+.+++..+..+...+++++|+++||++|
T Consensus 240 gsSKlkkAk~lgIpIVsEd~L~d~i~~~k~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~V~~~~ 319 (815)
T PLN03122 240 GSSKIAEAMERGIPVVREAWLIDSIEKQEAQPLEAYDVVSDLSVEGRGIPWDKQDPSEEAIESLSAELKLYGKRGVYKDS 319 (815)
T ss_pred CccHHHHHHHcCCcCccHHHHHHHHhcCCcccchhhhhccccccccccCcccccCCcccccccccchhccccCcCCCccc
Confidence 45899999999999999999999999999999999999866656667778887665554434456678889999999999
Q ss_pred ccccCCceEEEeCCeEEEEEEeeecCCCCcccEEEEEEEEcCCCCeEEEEEeeccCCCCcccccccCCCCHHHHHHHHHH
Q 037230 320 KLQEQGGKILEKDGILYNCAFSLCDQGRGMNLYCIVQLITVPDSNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVR 399 (815)
Q Consensus 320 ~l~~~~~hVy~d~~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~~~y~vf~~wGRVG~~~~g~~k~~~~~s~e~Ai~~F~k 399 (815)
++...++|||+++|.+|+|+|++||+++|+|+||+||||+++.+.||||+||||||+.|.+++++++|.++++|+.+|++
T Consensus 320 ~l~~~~~~V~~~~~~iYd~~Lnqtd~~~n~NkfY~iQlL~~~~~~y~~~~rWGRVG~~gq~~~~~~~~~~~~~Ai~~F~k 399 (815)
T PLN03122 320 KLQEEGGKIFEKDGILYNCAFSICDLGRGLNEYCIMQLITVPDSNLHLYYKKGRVGDDPNAEERLEEWEDVDAAIKEFVR 399 (815)
T ss_pred ccccCccEEEecCCeEeeeeeeeeeccCCCcceEEEEEEEcCCCcEEEEeeecccCCcCCCccccCCCCCHHHHHHHHHH
Confidence 98845999999999999999999999999999999999998777899999999999987667788999999999999999
Q ss_pred HHHHHhcCCCccccccccCccCCCCccccccCCccccccCCCCcccccccCCCCCCCHHHHHHHHHHhCHHHHHHHHHHc
Q 037230 400 LFEEVTGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRHGGLGMRQLGVAAAHSKLDPVVANFMKVLCSQEVYRYALMEM 479 (815)
Q Consensus 400 ~F~eKTgn~w~~w~~r~~f~k~pgKy~~v~~d~~~~~~~~~~~~~~~~~~~~~s~L~~~Vq~Li~~I~d~~~~~~~~~e~ 479 (815)
+|++||||+|++|++|.+|+++||||+|+++||+.+++.+.....+.+....+|+|+++||+||++|||+++|+++|++|
T Consensus 400 kF~eKTgn~~~~w~~r~~F~k~pgky~~id~d~~~~~~~~~~~~~~~~~~~~~skL~~~Vq~L~~lIfd~~~m~~~m~e~ 479 (815)
T PLN03122 400 LFEEITGNEFEPWEREKKFEKKRLKFYPIDMDDGVDVRAGGLGLRQLGVAAAHCKLDPKVANFMKVLCSQEIYRYAMMEM 479 (815)
T ss_pred HHHHHhCCCccccccccCccccCCCCceeeccccccccccccchhhcccccCCCCCCHHHHHHHHHHcCHHHHHHHHHHc
Confidence 99999999999999999999999999999999998765433233333345678999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhccccccCCCCccCCCHHHHHHHHHHHHHH
Q 037230 480 GLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRWFTLMHSLRPFIFRDNQEIADHAASSFEA 559 (815)
Q Consensus 480 ~~d~~k~PLGkLS~~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~fYtlIPh~~p~~i~~~~~l~~k~~~lle~ 559 (815)
+||+.+||||+||+.||.+||+||.+|+++|.+........+..+.+|||+|||+|||.+||+|+|.+.|++|+++|||+
T Consensus 480 ~~D~~kmPLGKLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~~~dlSnrfYTlIPh~~ppvi~~~~~lk~k~~~mLe~ 559 (815)
T PLN03122 480 GLDSPDLPMGMLSDFHLKRCEEVLLEFAEFVKSEKETGQKAEAMWLDFSNKWFSLVHSTRPFVIRDIDELADHAASALET 559 (815)
T ss_pred CCCcccCCCCcCCHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhccceeccCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998765433334467999999999999999999999999999994499999
Q ss_pred HHHHHHHHHhhhcccCCCCCCcchhhhhhcCceeEEcCCCCHHHHHHHHHHHhccCCCccCCcccccccceeeeEecCCc
Q 037230 560 VRDITVASHLIGDMSGSTLDDPLSDCYEKLACSISALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNAQ 639 (815)
Q Consensus 560 L~die~A~~ll~~~~~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~~ 639 (815)
|.||++|++|+++....+..||||.+|++|+|+|+||+++|+||++|++|+.+||++||+++..|+++|.+||+|+|.+.
T Consensus 560 L~DIeiA~~ll~~~~~~~~~~pLd~~Y~~L~~~i~pLd~~S~eyk~I~~Yl~nT~~~th~~~~~y~l~v~~IF~veR~ge 639 (815)
T PLN03122 560 VRDINVASRLIGDMTGSTLDDPLSDRYKKLGCSISPVDKESDDYKMIVKYLEKTYEPVKVGDVSYSVSVENIFAVESSAG 639 (815)
T ss_pred HHHHHHHHHHHhhccccccCCchHHHHHhcCceEEEcCCCCHHHHHHHHHHHhcCCCccccCcccceeEeEEEEeccCcc
Confidence 99999999999764445678999999999999999999999999999999999999999766789999999999999997
Q ss_pred cchhhhhcCCCceeeeccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhhhhcccccCCCCCceEEEEEEEe
Q 037230 640 PSLDEIKKLPNKVLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVAS 719 (815)
Q Consensus 640 ~~f~~~~~~~N~~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~~~~~~~mlLceVa 719 (815)
+||.+|++++||+|||||||.+||+|||+||||||||+||+||||||||||||||+||||+||+++.++++|+|||||||
T Consensus 640 ~rf~~~~~l~NR~LLWHGSR~tN~~gILsqGLRIAPPEAPvtGYMFGKGIYFAD~~SKSAnYC~t~~~~~~GlLlLcEVA 719 (815)
T PLN03122 640 PSLDEIKKLPNKVLLWCGTRSSNLLRHLAKGFLPAVCSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAVAS 719 (815)
T ss_pred ccchhhcCCCCceEEeccchhhhHHHHhhCCCccCCcccCCCCCccCCeeEecchhhhhhhhhccccCCCcceEEEEHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeccCCCCcCccCCCCCcceeeeccccCCCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecCCCcceeeE
Q 037230 720 LGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFL 799 (815)
Q Consensus 720 LG~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYL 799 (815)
||++++|+..++.++.++|+|+|||+|+|++.|||+++++|+|||.||+|+++++...+++|.||||||||++|||||||
T Consensus 720 LG~~~~el~~~~~~~~~~~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk~~~~~~~~~~L~yNEYIVYDvaQvrirYL 799 (815)
T PLN03122 720 LGDEVLELTKPPEDVKSYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCGRLIPSEHKDSPLEYNEYAVYDPKQVSIRFL 799 (815)
T ss_pred cCchHHHhhcCchhhhccCCCCceeeecCCCcCCCccceecCCCeEEeCCCCccCCCCCcccccCceEEEchhHEEEEEE
Confidence 99944899999668899999999999999999999999999999999999999988878899999999999999999999
Q ss_pred EEEEeccccccccCCC
Q 037230 800 VGVKFEERGVEMEPAE 815 (815)
Q Consensus 800 v~~~~~~~~~~~~~~~ 815 (815)
|+|+|+|+++|||++|
T Consensus 800 ~~vkf~~~~~~~~~~~ 815 (815)
T PLN03122 800 VGVKYEEKGAEMVTAE 815 (815)
T ss_pred EEEEeecceeEeecCC
Confidence 9999999999999987
|
|
| >PLN03123 poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
| >PLN03124 poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
| >cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA | Back alignment and domain information |
|---|
| >KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself | Back alignment and domain information |
|---|
| >cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT) | Back alignment and domain information |
|---|
| >PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA | Back alignment and domain information |
|---|
| >cd08003 WGR_PARP2_like WGR domain of poly(ADP-ribose) polymerases | Back alignment and domain information |
|---|
| >cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins | Back alignment and domain information |
|---|
| >cd08002 WGR_PARP3_like WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins | Back alignment and domain information |
|---|
| >cd07997 WGR_PARP WGR domain of poly(ADP-ribose) polymerases | Back alignment and domain information |
|---|
| >cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates | Back alignment and domain information |
|---|
| >cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA | Back alignment and domain information |
|---|
| >PF08063 PADR1: PADR1 (NUC008) domain; InterPro: IPR012982 This domain is found in poly(ADP-ribose)-synthetases [] | Back alignment and domain information |
|---|
| >smart00773 WGR Proposed nucleic acid binding domain | Back alignment and domain information |
|---|
| >PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain | Back alignment and domain information |
|---|
| >cd07994 WGR WGR domain | Back alignment and domain information |
|---|
| >cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins | Back alignment and domain information |
|---|
| >PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 | Back alignment and domain information |
|---|
| >PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A | Back alignment and domain information |
|---|
| >COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK06063 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >smart00292 BRCT breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >PRK07956 ligA NAD-dependent DNA ligase LigA; Validated | Back alignment and domain information |
|---|
| >TIGR00575 dnlj DNA ligase, NAD-dependent | Back alignment and domain information |
|---|
| >COG5275 BRCT domain type II [General function prediction only] | Back alignment and domain information |
|---|
| >COG3831 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3226 consensus DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases | Back alignment and domain information |
|---|
| >KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK05601 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] | Back alignment and domain information |
|---|
| >COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 815 | ||||
| 4dqy_C | 506 | Structure Of Human Parp-1 Bound To A Dna Double Str | 2e-47 | ||
| 2rd6_A | 350 | Parp Complexed With A861695 Length = 350 | 7e-32 | ||
| 1a26_A | 361 | The Catalytic Fragment Of Poly(Adp-Ribose) Polymera | 2e-31 | ||
| 1uk0_A | 350 | Crystal Structure Of Catalytic Domain Of Human Poly | 2e-31 | ||
| 1efy_A | 350 | Crystal Structure Of The Catalytic Fragment Of Poly | 7e-31 | ||
| 1gs0_A | 351 | Crystal Structure Of The Catalytic Fragment Of Muri | 5e-30 | ||
| 3kcz_A | 368 | Human Poly(Adp-Ribose) Polymerase 2, Catalytic Frag | 1e-25 | ||
| 3c49_A | 357 | Human Poly(Adp-Ribose) Polymerase 3, Catalytic Frag | 1e-10 | ||
| 2cr9_A | 139 | Solution Structure Of Wgr Domain Of Poly(Adp-Ribose | 5e-09 | ||
| 2riq_A | 160 | Crystal Structure Of The Third Zinc-Binding Domain | 7e-07 | ||
| 2jvn_A | 126 | Domain C Of Human Parp-1 Length = 126 | 1e-06 |
| >pdb|4DQY|C Chain C, Structure Of Human Parp-1 Bound To A Dna Double Strand Break Length = 506 | Back alignment and structure |
|
| >pdb|2RD6|A Chain A, Parp Complexed With A861695 Length = 350 | Back alignment and structure |
| >pdb|1A26|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase Complexed With Carba-Nad Length = 361 | Back alignment and structure |
| >pdb|1UK0|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp- Ribose) Polymerase With A Novel Inhibitor Length = 350 | Back alignment and structure |
| >pdb|1EFY|A Chain A, Crystal Structure Of The Catalytic Fragment Of Poly (Adp- Ribose) Polymerase Complexed With A Benzimidazole Inhibitor Length = 350 | Back alignment and structure |
| >pdb|1GS0|A Chain A, Crystal Structure Of The Catalytic Fragment Of Murine Poly (Adp-Ribose) Polymerase-2 Length = 351 | Back alignment and structure |
| >pdb|3KCZ|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In Complex With An Inhibitor 3-Aminobenzamide Length = 368 | Back alignment and structure |
| >pdb|3C49|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In Complex With An Inhibitor Ku0058948 Length = 357 | Back alignment and structure |
| >pdb|2CR9|A Chain A, Solution Structure Of Wgr Domain Of Poly(Adp-Ribose) Polymerase-1 Length = 139 | Back alignment and structure |
| >pdb|2RIQ|A Chain A, Crystal Structure Of The Third Zinc-Binding Domain Of Human Parp-1 Length = 160 | Back alignment and structure |
| >pdb|2JVN|A Chain A, Domain C Of Human Parp-1 Length = 126 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Length = 506 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = 5e-94
Identities = 151/513 (29%), Positives = 246/513 (47%), Gaps = 27/513 (5%)
Query: 301 ESIAAELKLYGKRGVYKDTKLQEQGGKILEKDGILYNCAFSLCDQGRGMNLYCIVQLITV 360
+L L G V D+ L+ +LEK G +++ L D +G N Y +QL+
Sbjct: 3 SEKRMKLTLKGGAAVDPDSGLEH-SAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLED 61
Query: 361 PDSNLH-LYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEVTGNEFEPWEREKKFQ 419
N + ++ G+VG +LE+ ++AI+ F++L+EE TGN + K F
Sbjct: 62 DKENRYWIFRSWGRVGTV-IGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWH----SKNFT 116
Query: 420 KKPLKFYPIDMDDGVEVRHGGLGMRQLGVAAAHSKLDPVVANFMKVLCSQEVYRYALMEM 479
K P KFYP+++D G + + SKL V + +K++ E + A++E
Sbjct: 117 KYPKKFYPLEIDYGQDEEAV---KKLTVNPGTKSKLPKPVQDLIKMIFDVESMKKAMVEY 173
Query: 480 GLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRWFTLMHS-- 537
+D +P+G LS + +L + +AV Q D SNR++TL+
Sbjct: 174 EIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQ-----ILDLSNRFYTLIPHDF 228
Query: 538 --LRPFIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGSTLDDPLSDCYEKLACSISA 595
+P + + + A + + DI VA L+ S + DP+ YEKL I
Sbjct: 229 GMKKPPLLNNADSVQAKAEM-LDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKV 287
Query: 596 LEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIE-SNAQPSLDEIKKLPNKVLL 654
+++DS++ ++I Y++ T+ Y + V +IF IE K+L N+ LL
Sbjct: 288 VDRDSEEAEIIRKYVKNTHATTH---NAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLL 344
Query: 655 WCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLV 714
W G+R++N L +G A PV GYMFG+ I +D +++A Y T+ P G ++
Sbjct: 345 WHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLIL 404
Query: 715 LAVASLGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPS 774
L +LG+ ELK +K L K VKGLG+ D S + D + VP G I S
Sbjct: 405 LGEVALGNM-YELKHASHISK-LPKGKHSVKGLGKTTPDPSANISL-DGVDVPLGTGISS 461
Query: 775 EHKNSPLEYNEYAVYDPKQTSIRFLVGVKFEER 807
++ L YNEY VYD Q ++++L+ +KF +
Sbjct: 462 GVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 494
|
| >1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Length = 350 | Back alignment and structure |
|---|
| >3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Length = 368 | Back alignment and structure |
|---|
| >3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Length = 357 | Back alignment and structure |
|---|
| >2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A Length = 160 | Back alignment and structure |
|---|
| >2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
| >2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Length = 113 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Length = 277 | Back alignment and structure |
|---|
| >3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* Length = 193 | Back alignment and structure |
|---|
| >2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 | Back alignment and structure |
|---|
| >2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Length = 198 | Back alignment and structure |
|---|
| >3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Length = 221 | Back alignment and structure |
|---|
| >2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
| >3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 | Back alignment and structure |
|---|
| >3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 | Back alignment and structure |
|---|
| >3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Length = 217 | Back alignment and structure |
|---|
| >3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* Length = 240 | Back alignment and structure |
|---|
| >3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
| >2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 | Back alignment and structure |
|---|
| >1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Length = 92 | Back alignment and structure |
|---|
| >1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 | Back alignment and structure |
|---|
| >1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 | Back alignment and structure |
|---|
| >1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Length = 264 | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 | Back alignment and structure |
|---|
| >2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 | Back alignment and structure |
|---|
| >2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 | Back alignment and structure |
|---|
| >3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 | Back alignment and structure |
|---|
| >3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220 | Back alignment and structure |
|---|
| >1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Length = 667 | Back alignment and structure |
|---|
| >2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
| >2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Length = 109 | Back alignment and structure |
|---|
| >1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Length = 259 | Back alignment and structure |
|---|
| >3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 | Back alignment and structure |
|---|
| >3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 | Back alignment and structure |
|---|
| >2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 815 | |||
| 4dqy_C | 506 | Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib | 100.0 | |
| 3kjd_A | 368 | Poly [ADP-ribose] polymerase 2; transferase, enzym | 100.0 | |
| 1efy_A | 350 | Poly (ADP-ribose) polymerase; benzimidazole, inhib | 100.0 | |
| 3c4h_A | 357 | Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co | 100.0 | |
| 2riq_A | 160 | Poly [ADP-ribose] polymerase 1; Zn-binding domain, | 100.0 | |
| 2x5y_A | 173 | Zinc finger CCCH-type antiviral protein 1; antivir | 100.0 | |
| 3u9h_A | 240 | Tankyrase-2; protein-ligand complex, diphtheria to | 100.0 | |
| 2pqf_A | 198 | Poly [ADP-ribose] polymerase 12; enzyme-inhibitor | 100.0 | |
| 3blj_A | 221 | Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, | 100.0 | |
| 3hkv_A | 217 | PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra | 100.0 | |
| 3smj_A | 193 | Poly [ADP-ribose] polymerase 14; diphtheria toxin | 100.0 | |
| 2eoc_A | 124 | Poly [ADP-ribose] polymerase 3; anti-parallel beta | 99.97 | |
| 4f0d_A | 277 | PARP-16, poly [ADP-ribose] polymerase 16; transfer | 99.83 | |
| 2cok_A | 113 | Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r | 99.64 | |
| 3l3e_A | 107 | DNA topoisomerase 2-binding protein 1; BRCT domain | 99.63 | |
| 2d8m_A | 129 | DNA-repair protein XRCC1; parallel beta-sheet, DNA | 99.61 | |
| 3l46_A | 112 | Protein ECT2; alternative splicing, guanine-nucleo | 99.51 | |
| 1l7b_A | 92 | DNA ligase; BRCT, autostructure, structural genomi | 99.51 | |
| 2k6g_A | 109 | Replication factor C subunit 1; protein, BRCT, DNA | 99.47 | |
| 2ebu_A | 112 | Replication factor C subunit 1; A/B/A 3 layers, pa | 99.45 | |
| 2cou_A | 109 | ECT2 protein; BRCT domain, RHO GTPase, structural | 99.41 | |
| 4id3_A | 92 | DNA repair protein REV1; BRCT domain, protein bind | 99.36 | |
| 2ebw_A | 97 | DNA repair protein REV1; A/B/A 3 layers, parallel | 99.33 | |
| 3olc_X | 298 | DNA topoisomerase 2-binding protein 1; BRCT domain | 99.26 | |
| 3ef1_A | 442 | RNA polymerase II subunit A C-terminal domain phos | 99.22 | |
| 3ef0_A | 372 | RNA polymerase II subunit A C-terminal domain phos | 99.21 | |
| 3pa6_A | 107 | Microcephalin; BRCT domain, cell cycle; HET: MSE; | 99.2 | |
| 1wf6_A | 132 | Similar to S.pombe -RAD4+/CUT5+product (A40727); B | 99.06 | |
| 3pc6_A | 104 | DNA repair protein XRCC1; BRCT domain, protein:pro | 98.99 | |
| 3olc_X | 298 | DNA topoisomerase 2-binding protein 1; BRCT domain | 98.93 | |
| 1kzy_C | 259 | Tumor suppressor P53-binding protein 1; tandem-BRC | 98.9 | |
| 3sqd_A | 219 | PAX-interacting protein 1; tandem BRCT domains, ce | 98.87 | |
| 3ii6_X | 263 | DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter | 98.84 | |
| 2vxb_A | 241 | DNA repair protein RHP9; BRCT, nucleus, cell cycle | 98.83 | |
| 1l0b_A | 229 | BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu | 98.83 | |
| 1t15_A | 214 | Breast cancer type 1 susceptibility protein; prote | 98.78 | |
| 2nte_A | 210 | BARD-1, BRCA1-associated ring domain protein 1; BR | 98.77 | |
| 1dgs_A | 667 | DNA ligase; AMP complex, NAD+-dependent; HET: DNA | 98.77 | |
| 2owo_A | 671 | DNA ligase; protein-DNA complex, ligase-DNA comple | 98.75 | |
| 3al2_A | 235 | DNA topoisomerase 2-binding protein 1; BRCT domain | 98.73 | |
| 2etx_A | 209 | Mediator of DNA damage checkpoint protein 1; tande | 98.68 | |
| 3u3z_A | 199 | Microcephalin; DNA repair, cell cycle regulation, | 98.59 | |
| 3l41_A | 220 | BRCT-containing protein 1; BRC1, BRCT domain, tand | 98.33 | |
| 3u3z_A | 199 | Microcephalin; DNA repair, cell cycle regulation, | 98.32 | |
| 1t15_A | 214 | Breast cancer type 1 susceptibility protein; prote | 98.29 | |
| 2ep8_A | 100 | Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r | 98.29 | |
| 1z56_C | 264 | DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA | 98.29 | |
| 1l0b_A | 229 | BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu | 98.24 | |
| 3ii6_X | 263 | DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter | 98.11 | |
| 2etx_A | 209 | Mediator of DNA damage checkpoint protein 1; tande | 97.99 | |
| 2jw5_A | 106 | DNA polymerase lambda; BRCT domain, family X polym | 97.91 | |
| 3pc7_A | 88 | DNA ligase 3; DNA repair, BRCT domain, protein:pro | 97.82 | |
| 1z56_C | 264 | DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA | 97.8 | |
| 2nte_A | 210 | BARD-1, BRCA1-associated ring domain protein 1; BR | 97.7 | |
| 3sqd_A | 219 | PAX-interacting protein 1; tandem BRCT domains, ce | 97.68 | |
| 2coe_A | 120 | Deoxynucleotidyltransferase, terminal variant; BRC | 97.59 | |
| 1kzy_C | 259 | Tumor suppressor P53-binding protein 1; tandem-BRC | 97.58 | |
| 2dun_A | 133 | POL MU, DNA polymerase MU; layers A/B/A, parallel | 97.18 | |
| 3al2_A | 235 | DNA topoisomerase 2-binding protein 1; BRCT domain | 96.84 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 96.76 | |
| 2l42_A | 106 | DNA-binding protein RAP1; BRCT domain, protein bin | 96.67 | |
| 3l41_A | 220 | BRCT-containing protein 1; BRC1, BRCT domain, tand | 95.72 | |
| 2vxb_A | 241 | DNA repair protein RHP9; BRCT, nucleus, cell cycle | 95.43 | |
| 4gns_A | 290 | Chitin biosynthesis protein CHS5; FN3, BRCT, tetra | 92.9 | |
| 3huf_A | 325 | DNA repair and telomere maintenance protein NBS1; | 91.97 | |
| 3t7k_A | 256 | RTT107, regulator of TY1 transposition protein 107 | 81.18 |
| >4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-125 Score=1073.88 Aligned_cols=486 Identities=30% Similarity=0.520 Sum_probs=431.2
Q ss_pred HHHHHHHHhcCccCCCCCccccCCceEEEeCCeEEEEEEeeecCCCCcccEEEEEEEEcCC-CCeEEEEEeeccCCCCcc
Q 037230 302 SIAAELKLYGKRGVYKDTKLQEQGGKILEKDGILYNCAFSLCDQGRGMNLYCIVQLITVPD-SNLHLYYKKGKVGDDPNA 380 (815)
Q Consensus 302 s~~~k~k~kg~~~Vd~~s~l~~~~~hVy~d~~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~-~~y~vf~~wGRVG~~~~g 380 (815)
++++++++||+++|||+|++.+ ++|||+++|.+|+|+|+++|+++|+|+||+|||++++. +.|+||++|||||+.+ |
T Consensus 4 ~~~~~~~~kg~~~Vd~~~~~~~-~~~Vy~~~~~~Y~~~L~~td~~~n~NkfY~lQll~~~~~~~y~v~~rWGRVG~~~-G 81 (506)
T 4dqy_C 4 EKRMKLTLKGGAAVDPDSGLEH-SAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTVI-G 81 (506)
T ss_dssp -----------CCCCGGGSCTT-TSCCCEETTEESEEEEEEECTTTCCEEEEEEECC--------CEEEEEEETTSSC-E
T ss_pred CceEEEEEeCCeecCCccCCCC-ceEEEEeCCeEEEEEEEcccccCCCcceEEEEEEEcCCCCEEEEEEEECccCccc-c
Confidence 3578899999999999999986 99999999999999999999999999999999999876 8899999999999964 7
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhcCCCccccccccCccCCCCccccccCCccccccCCCCcccccccCCCCCCCHHHH
Q 037230 381 EERLEEWTGVDNAIKEFVRLFEEVTGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRHGGLGMRQLGVAAAHSKLDPVVA 460 (815)
Q Consensus 381 ~~k~~~~~s~e~Ai~~F~k~F~eKTgn~w~~w~~r~~f~k~pgKy~~v~~d~~~~~~~~~~~~~~~~~~~~~s~L~~~Vq 460 (815)
++++++|+++++|+++|+++|++||||+| ++| +|+++||||+||++||+.+++... .+. .....+|+|+++||
T Consensus 82 q~~l~~~~s~~~Ai~~F~k~F~~KTgn~W---~~R-~f~k~pgKy~~ve~d~~~~~~~~~-~~~--~~~~~~s~L~~~Vq 154 (506)
T 4dqy_C 82 SNKLEQMPSKEDAIEHFMKLYEEKTGNAW---HSK-NFTKYPKKFYPLEIDYGQDEEAVK-KLT--VNPGTKSKLPKPVQ 154 (506)
T ss_dssp EEEEECCSCSHHHHHHHHHHHHHHHSSCS---SCS-SCCCCTTCCEEECBC--------------------CCCSCHHHH
T ss_pred cceeccCCCHHHHHHHHHHHHHHHhcCCc---ccc-CccccCCccceeecccccchhhhh-hhc--ccCCCCCCCCHHHH
Confidence 89999999999999999999999999965 778 999999999999999986433211 111 12457899999999
Q ss_pred HHHHHHhCHHHHHHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhccccccCC--
Q 037230 461 NFMKVLCSQEVYRYALMEMGLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRWFTLMHSL-- 538 (815)
Q Consensus 461 ~Li~~I~d~~~~~~~~~e~~~d~~k~PLGkLS~~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~fYtlIPh~-- 538 (815)
+||++|||+++|+++|++|++|+.+||||+||++||.+||+||.+|+++|++.. ..+.+.+|||+|||+|||+
T Consensus 155 ~Li~lIfd~~~~~~~m~~~~~D~~k~PLGkLS~~qI~~g~~vL~~i~~~l~~~~-----~~~~l~~lsn~fYtlIPh~fg 229 (506)
T 4dqy_C 155 DLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGS-----SDSQILDLSNRFYTLIPHDFG 229 (506)
T ss_dssp HHHHHHSCHHHHHHHHHTTTBCCSSTTTSCBCHHHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHSCBCCT
T ss_pred HHHHHHhHHHHHHHHHHHhCCChhhCCCccCCHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHhhhhEeCCcccc
Confidence 999999999999999999999999999999999999999999999999998653 3468999999999999997
Q ss_pred --CCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhhhhcCceeEEcCCCCHHHHHHHHHHHhccCC
Q 037230 539 --RPFIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGSTLDDPLSDCYEKLACSISALEKDSDDYKMIVNYLEKTYEP 616 (815)
Q Consensus 539 --~p~~i~~~~~l~~k~~~lle~L~die~A~~ll~~~~~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~y~~~t~~~ 616 (815)
+||+|++.++|++|+ +||++|.||++|++|+++.......||+|.+|++|+|+|++|+++|+||++|++||++|+++
T Consensus 230 ~~~pp~i~~~~~l~~k~-~ll~~L~dieiA~~l~~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~~~~~T~~~ 308 (506)
T 4dqy_C 230 MKKPPLLNNADSVQAKA-EMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHAT 308 (506)
T ss_dssp TSCCCCCCSHHHHHHHH-HHHHHHHHHHHHHHHHSCSCCCTTSCHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHTCCS
T ss_pred CCCCCccCCHHHHHHHH-HHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHhCcEEEECCCCChHHHHHHHHHHhccCc
Confidence 899999999999999 99999999999999997643446789999999999999999999999999999999999999
Q ss_pred CccCCcccccccceeeeEecCC-ccchhhhhcCCCceeeeccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhh
Q 037230 617 VKLGDIEYGVSVDNIFVIESNA-QPSLDEIKKLPNKVLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAA 695 (815)
Q Consensus 617 ~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~~~N~~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~ 695 (815)
+| ..|+++|++||||+|++ +++|+++++++|+++||||||.+||++||++||+++|++++.+|+|||+|||||+++
T Consensus 309 ~h---~~~~~~I~~I~rI~~~~e~~~f~~~k~~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~a 385 (506)
T 4dqy_C 309 TH---NAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMV 385 (506)
T ss_dssp SC---TTCCCCEEEEEEEEETTTTTTTHHHHSSSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSH
T ss_pred cc---ccCCceeEeEEEEccHHHHhhHHHhhcCCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchh
Confidence 99 67899999999999999 999999989999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCCCceEEEEEEEecCCcceeccCCCCcCccCCCCCcceeeeccccCCCCCceeecCCeEecCCCcccCC
Q 037230 696 AEAARYGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSE 775 (815)
Q Consensus 696 skS~~Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~ 775 (815)
|||++||+++..++.++||||+||||+ ++++..+ .++++||+|||||+|+|++.|||++. ++.|||.||+|+++++.
T Consensus 386 skS~~Y~~~~~~~~~~~mll~~V~lG~-~~~~~~~-~~~~~~p~G~dSv~g~g~~~P~p~~~-~~~dGv~vP~G~~~~~~ 462 (506)
T 4dqy_C 386 SKSANYCHTSQGDPIGLILLGEVALGN-MYELKHA-SHISKLPKGKHSVKGLGKTTPDPSAN-ISLDGVDVPLGTGISSG 462 (506)
T ss_dssp HHHHTTSCCCSSSCEEEEEEEEEECCS-EEEESSC-CCCSSCCTTCCEEEECCSEEECGGGC-EESSSCEECCCCEEECS
T ss_pred hccccccCCCCCCCeEEEEEEEEecCC-ceecccc-hhhhccCCCCceEEeCCcCcCCcccc-cccCCeEEECCCcccCC
Confidence 999999999877889999999999999 9999988 57999999999999999999999998 88999999999999988
Q ss_pred CCCCCCCCceEEEecCCCcceeeEEEEEecccc
Q 037230 776 HKNSPLEYNEYAVYDPKQTSIRFLVGVKFEERG 808 (815)
Q Consensus 776 ~~~~~l~ynEyIVYd~~Qv~~rYLv~~~~~~~~ 808 (815)
..+++|.||||||||++||||||||+|+|+|+.
T Consensus 463 ~~~~~l~ynEyiVYd~~Qir~rYLv~v~~~~~~ 495 (506)
T 4dqy_C 463 VNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFKT 495 (506)
T ss_dssp CCCCSCSBCEEEESSGGGEEEEEEEEEECCCCC
T ss_pred CCCCcccccceEEEchHHeeEEEEEEEEEEcch
Confidence 888999999999999999999999999999986
|
| >3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A | Back alignment and structure |
|---|
| >1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* | Back alignment and structure |
|---|
| >3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* | Back alignment and structure |
|---|
| >2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A | Back alignment and structure |
|---|
| >2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} | Back alignment and structure |
|---|
| >3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ... | Back alignment and structure |
|---|
| >2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* | Back alignment and structure |
|---|
| >3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A* | Back alignment and structure |
|---|
| >2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A | Back alignment and structure |
|---|
| >2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} | Back alignment and structure |
|---|
| >1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 | Back alignment and structure |
|---|
| >2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A | Back alignment and structure |
|---|
| >2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* | Back alignment and structure |
|---|
| >3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* | Back alignment and structure |
|---|
| >1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 | Back alignment and structure |
|---|
| >3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* | Back alignment and structure |
|---|
| >1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B | Back alignment and structure |
|---|
| >3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* | Back alignment and structure |
|---|
| >2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* | Back alignment and structure |
|---|
| >1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A | Back alignment and structure |
|---|
| >2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A | Back alignment and structure |
|---|
| >1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* | Back alignment and structure |
|---|
| >2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
| >3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* | Back alignment and structure |
|---|
| >2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A | Back alignment and structure |
|---|
| >3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* | Back alignment and structure |
|---|
| >3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* | Back alignment and structure |
|---|
| >3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A | Back alignment and structure |
|---|
| >2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* | Back alignment and structure |
|---|
| >2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A | Back alignment and structure |
|---|
| >2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* | Back alignment and structure |
|---|
| >1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A | Back alignment and structure |
|---|
| >3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B | Back alignment and structure |
|---|
| >2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* | Back alignment and structure |
|---|
| >3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* | Back alignment and structure |
|---|
| >2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* | Back alignment and structure |
|---|
| >4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* | Back alignment and structure |
|---|
| >3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 815 | ||||
| d1efya2 | 215 | d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase | 2e-50 | |
| d1gs0a2 | 217 | d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, | 4e-50 | |
| d1efya1 | 135 | a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) po | 1e-32 | |
| d1gs0a1 | 134 | a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) po | 2e-29 | |
| d2cr9a1 | 126 | d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1 | 7e-29 | |
| d1l7ba_ | 92 | c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 | 6e-11 | |
| d1kzyc1 | 153 | c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) | 6e-08 | |
| d1t15a2 | 102 | c.15.1.3 (A:1758-1859) Breast cancer associated pr | 5e-06 | |
| d1wf6a_ | 132 | c.15.1.5 (A:) DNA topoisomerase II binding protein | 2e-05 |
| >d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ADP-ribosylation superfamily: ADP-ribosylation family: Poly(ADP-ribose) polymerase, C-terminal domain domain: Poly(ADP-ribose) polymerase, C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 173 bits (440), Expect = 2e-50
Identities = 74/220 (33%), Positives = 114/220 (51%), Gaps = 7/220 (3%)
Query: 589 LACSISALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIKK 647
L I ++KDS++ K+I Y++ T+ Y + V IF IE K+
Sbjct: 1 LRTDIKVVDKDSEEAKIIKQYVKNTHAATH---NAYDLKVVEIFRIEREGESQRYKPFKQ 57
Query: 648 LPNKVLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAAD 707
L N+ LLW G+R++N L +G A PV GYMFG+ I +D +++A Y T+
Sbjct: 58 LHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQA 117
Query: 708 RPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVP 767
P G ++L +LG+ + ELK TK L K VKGLG+ D + D ++VP
Sbjct: 118 DPIGLILLGEVALGN-MYELKNASHITK-LPKGKHSVKGLGKTAPDPTATTTL-DGVEVP 174
Query: 768 GGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVGVKFEER 807
G I + ++ L YNEY VYD Q ++++L+ +KF +
Sbjct: 175 LGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 214
|
| >d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 217 | Back information, alignment and structure |
|---|
| >d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 135 | Back information, alignment and structure |
|---|
| >d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]} Length = 134 | Back information, alignment and structure |
|---|
| >d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
| >d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Length = 92 | Back information, alignment and structure |
|---|
| >d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 153 | Back information, alignment and structure |
|---|
| >d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 132 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 815 | |||
| d1gs0a2 | 217 | Poly(ADP-ribose) polymerase, C-terminal domain {Mo | 100.0 | |
| d1efya2 | 215 | Poly(ADP-ribose) polymerase, C-terminal domain {Ch | 100.0 | |
| d2cr9a1 | 126 | Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Hom | 100.0 | |
| d1efya1 | 135 | Domain of poly(ADP-ribose) polymerase {Chicken (Ga | 100.0 | |
| d1gs0a1 | 134 | Domain of poly(ADP-ribose) polymerase {Mouse (Mus | 100.0 | |
| d1l7ba_ | 92 | NAD+-dependent DNA ligase, domain 4 {Thermus therm | 99.5 | |
| d1cdza_ | 96 | DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta | 99.29 | |
| d1t15a2 | 102 | Breast cancer associated protein, BRCA1 {Human (Ho | 99.28 | |
| d1wf6a_ | 132 | DNA topoisomerase II binding protein 1, TopBP1 {Hu | 99.27 | |
| d1t15a1 | 109 | Breast cancer associated protein, BRCA1 {Human (Ho | 99.16 | |
| d1kzyc1 | 153 | 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d1in1a_ | 88 | DNA ligase III alpha {Human (Homo sapiens) [TaxId: | 98.45 | |
| d1l0ba2 | 97 | Breast cancer associated protein, BRCA1 {Rat (Ratt | 97.36 | |
| d1kzyc2 | 106 | 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | 97.36 | |
| d1jeqa1 | 51 | DNA binding C-terminal domain of ku70 {Human (Homo | 85.43 | |
| d1zrja1 | 37 | Heterogeneous nuclear ribonucleoprotein U-like pro | 83.62 | |
| d1h1js_ | 44 | S/mar DNA-binding protein Tho1 {Baker's yeast (Sac | 82.78 |
| >d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ADP-ribosylation superfamily: ADP-ribosylation family: Poly(ADP-ribose) polymerase, C-terminal domain domain: Poly(ADP-ribose) polymerase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-55 Score=452.08 Aligned_cols=212 Identities=30% Similarity=0.595 Sum_probs=199.7
Q ss_pred cCceeEEcCCCCHHHHHHHHHHHhccCCCccCCcccccccceeeeEecCC-ccchhhhhcCCCceeeeccCCccchhhhc
Q 037230 589 LACSISALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIKKLPNKVLLWCGTRSSNLLRHL 667 (815)
Q Consensus 589 L~~~i~~L~~~s~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~~~N~~lLwHGSr~~N~~gIL 667 (815)
|+|+|+||+++|+||++|.+||.+|++++| ..+.++|++||+|+|.+ +++|. .+.+|+++|||||+.+|+.+||
T Consensus 1 L~c~i~~l~~~s~ey~~I~~~~~~t~~~~~---~~~~~~I~~I~~v~r~~e~~~~~--~~~~n~~~LfHGT~~~n~~~Il 75 (217)
T d1gs0a2 1 LHCALRPLDHESNEFKVISQYLQSTHAPTH---KDYTMTLLDVFEVEKEGEKEAFR--EDLPNRMLLWHGSRLSNWVGIL 75 (217)
T ss_dssp TTEEEEECCTTSHHHHHHHHHHHHTCCTTC---CSEEEEEEEEEEEEETTHHHHSC--TTCSCEEEEEEEECGGGHHHHH
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHhhCCCcc---CCCcceEEEEEEEcchhHHHHhh--hcCCceEEEEecccHHHHHHHH
Confidence 799999999999999999999999999988 67889999999999999 99997 5789999999999999999999
Q ss_pred ccCCCCCCCCCCCCCceeeeeeeechhhhhhhcccccCCCCCceEEEEEEEecCCcceeccCCCCcCccCCCCCcceeee
Q 037230 668 QKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKLGVKGL 747 (815)
Q Consensus 668 ~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~G~~Sv~g~ 747 (815)
++||+++++.++.+|+|||+||||||++|+|++||+++.+++.++||||+||||+ +.+++..+..+.+||+|+|||+|+
T Consensus 76 ~~Gf~~~~~~~~~~g~~fG~GiYfa~~~s~s~~y~~~~~~~~~~~m~l~~V~lG~-~~~~~~~~~~~~~~p~g~~sv~~~ 154 (217)
T d1gs0a2 76 SHGLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQ-CNELLEANPKAQGLLRGKHSTKGM 154 (217)
T ss_dssp HHCSCCCCSSSCGGGSTTSSSEEEBSCHHHHHGGGCCCSSSCEEEEEEEEEECCS-EEEESSCCTTGGGGCTTCSEEEEC
T ss_pred HcCCCCCCccCcccceeeeccceeccccccccccccCCcCCCeEEEEEEEEEecc-eeeeccCCcccccCCCCcceeeec
Confidence 9999999999999999999999999999999999999888899999999999999 888888878899999999999999
Q ss_pred ccccCCCCCceeecCCeEecCCCcccCCC---CCCCCCCceEEEecCCCcceeeEEEEEeccc
Q 037230 748 GRKKTDESEHFFWNDDIKVPGGRLIPSEH---KNSPLEYNEYAVYDPKQTSIRFLVGVKFEER 807 (815)
Q Consensus 748 G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~---~~~~l~ynEyIVYd~~Qv~~rYLv~~~~~~~ 807 (815)
|++.|+|+..+.+ ||+.||+|+.+++.. .+.+|.||||||||++||+|||||+|+|+|+
T Consensus 155 g~~~p~p~~~~~~-~g~~vp~g~~~~s~~~~~~~~~l~~nEyVVy~~~Qv~~~YLi~~k~~~~ 216 (217)
T d1gs0a2 155 GKMAPSPAHFITL-NGSTVPLGPASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQFNFL 216 (217)
T ss_dssp CSEECCGGGCEEE-TTEEECCSCCEECCCCCSSSCCCSBCEEEESCGGGEEEEEEEEEEEEEC
T ss_pred ccccCChhhcccc-CCeeccCCCccccCccCCCCCccccCeEEEEchhheeEEEEEEEEEEec
Confidence 9999999988776 999999999886543 3567999999999999999999999999986
|
| >d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|