Citrus Sinensis ID: 037238

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

MKKLKTYYSHFRSHNHPPNKWIFPLAVGSVVSIFLIFLTTLTSPTATRSSSPLPVSLLPPPPRFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQEFRNTTVNSDLHFISWDNPPKQHPHYLNLADMQRMVDSNAPFARKFPREDPVLDKIDSELLSRNPGMVTPGGWCIGSRKNGSDPCSVVGNTTVLRPGPGAKRLGSLITSLLSKEKFRPGQCK

ccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHcccccccccccEEEEcccccEEEcccHHHHHHHHHHHHHHHccccccEEEEccccccccccHHHHHHHHHHccccccEEEcccccccccccccccEEEcccccccccccEEEEEcccccccccEEEEEcEEEEEcHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHcccccccccccccEEEEEcccccccccEEEcHHHHHHHHcccccEEEccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccc

cHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHcccHHHHcccEEEEcccccEEcccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHccccccccccccccccccHHccccEEEEccccEEEccccEEEEcccccccccEEEEccccEEEEEHHHHEEEEEccccHHHHHHHHHHHccccccccEEEEEcccccccccccccccEEEEEcccccccccEEEHHcHHHHHHcccHHHHHcccccHHHHHHHHHHHHccccccccccEEccccccccccccccccccEcccccHHHHHHHHHHHHHccccccccccc

mkklktyyshfrshnhppnkwifplavGSVVSIFLIFLTtltsptatrsssplpvsllpppprfaylisgsvgdgnMIKRTLLAlyhpnnvyvvhldrasseserldLQNFVNGFHLFNKFSNVKMITKANlvtyrgptmVANTLHAAAVLLREggdwdwfinlsasdyplvtqDDLLDAfsylprdlnfidhtsnigwkefqrakpiiidpglymskkADVFWvtqkrsvpsafkLFTGSAWMALSRSFIDYCIwgwdnlprTVLMYYANflsspegyfHTVICNAQEfrnttvnsdlhfiswdnppkqhphylnladmqrmvdsnapfarkfpredpvldkidsellsrnpgmvtpggwcigsrkngsdpcsvvgnttvlrpgpgakrLGSLITSLlskekfrpgqck

MKKLKTYYSHFRSHNHPPNKWIFPLAVGSVVSIFLIFLTTLTsptatrsssplpvsllppPPRFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHtsnigwkefqrAKPIIIDPGLYMSKKADVFWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQEFRNTTVNSDLHFISWDNPPKQHPHYLNLADMQRMVDSNAPFARKFPREDPVLDKIdsellsrnpgmvtpggwcigsrkngsdPCSVVGnttvlrpgpgakrLGSLitsllskekfrpgqck

MKKLKTYYSHFRSHNHPPNKWIFPLAVGSVVSIFLIFLTTLTSPTATRsssplpvsllppppRFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQEFRNTTVNSDLHFISWDNPPKQHPHYLNLADMQRMVDSNAPFARKFPREDPVLDKIDSELLSRNPGMVTPGGWCIGSRKNGSDPCSVVGNTTVLRPGPGAKRLGSLITSLLSKEKFRPGQCK

******YYSHFRSHNHPPNKWIFPLAVGSVVSIFLIFLTTLT*******************PRFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRAS**SERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQEFRNTTVNSDLHFISWDNP****PHYLNLA************************************MVTPGGWCIGSR******CSVVGNTTVL****************************

***************HPPNKWIFPLAVGSVVSIFLIFLTTLTS*******************RFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQEFRNTTVNSDLHFISWDNPPKQHPHYLNLADMQRMVDSNAPFARKFPREDPVLDKIDSELLSRNPGMVTPGGWCIGS*KNGSDPCSVVGNTTVLRPGPGAKRLGSLITSLLSKEK*RP*QC*

MKKLKTYYSHFRSHNHPPNKWIFPLAVGSVVSIFLIFLTTLTS**********PVSLLPPPPRFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQEFRNTTVNSDLHFISWDNPPKQHPHYLNLADMQRMVDSNAPFARKFPREDPVLDKIDSELLSRNPGMVTPGGWCIGSRKNGSDPCSVVGNTTVLRPGPGAKRLGSLITSLLSK*********

iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		410	2.2.26 [Sep-21-2011]
Q9EPI1		821	Xylosyltransferase 1 (Fra	yes	no	0.7	0.349	0.272	9e-22
Q5QQ56		950	Xylosyltransferase 1 OS=C	yes	no	0.695	0.3	0.265	3e-20
Q5QQ57		945	Xylosyltransferase 1 OS=P	yes	no	0.685	0.297	0.268	4e-20
Q86Y38		959	Xylosyltransferase 1 OS=H	yes	no	0.685	0.293	0.268	4e-20
Q811B1		953	Xylosyltransferase 1 OS=M	yes	no	0.685	0.294	0.268	6e-20
Q5QQ53		880	Xylosyltransferase oxt OS	yes	no	0.648	0.302	0.277	1e-19
Q7KVA1		876	Xylosyltransferase oxt OS	yes	no	0.639	0.299	0.269	6e-19
Q5QQ51		865	Xylosyltransferase 2 OS=P	no	no	0.648	0.307	0.273	8e-19
Q9H1B5		865	Xylosyltransferase 2 OS=H	no	no	0.648	0.307	0.273	1e-18
Q5QQ55		848	Xylosyltransferase OS=Cio	yes	no	0.617	0.298	0.249	1e-18

>sp\|Q9EPI1\|XYLT1_RAT Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1	Back alignment and function desciption

 Score =  105 bits (261), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 150/327 (45%), Gaps = 40/327 (12%)

Query: 55  VSLLPPPP-RFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVN 113
           V  +PP P R A+++         ++R   A+YH ++ Y +H+D+ S+   R  LQ    
Sbjct: 183 VEYMPPNPVRIAFVLVVHGRASRQLQRMFKAIYHKDHFYYIHVDKRSNYLHRQVLQ---- 238

Query: 114 GFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDW--FINLSASDYPL 171
                 ++ NV++ +      + G ++++  L +   LL E  DW W  FINLSA+DYP+
Sbjct: 239 ---FSRQYDNVRVTSWRMATIWGGASLLSTYLQSMRDLL-EMTDWPWDFFINLSAADYPI 294

Query: 172 VTQDDLLDAFSYLPRDLNFIDH--TSNIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKR 229
            T D L+ AF    RD+NF+      N  +   Q    + ++   +M       W    R
Sbjct: 295 RTNDQLV-AFLSRYRDMNFLKSHGRDNARFIRKQDLDRLFLECDTHM-------WRLGDR 346

Query: 230 SVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQE 289
            +P    +  GS W  L+R F++Y  +  D+L   +  +Y+  L   E +FHTV+ N+  
Sbjct: 347 RIPEGIAVDGGSDWFLLNRKFVEYVAFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPH 406

Query: 290 FRNTTVNSDLHFISWDNP---PKQHPHYLNLA----------DMQRMVDSNAP--FARKF 334
             +T V+++L   +W+       Q+ H ++            D  R   +  P  FARKF
Sbjct: 407 C-DTMVDNNLRITNWNRKLGCKCQYKHIVDWCGCSPNDFKPQDFHRFQQTARPTFFARKF 465

Query: 335 PR--EDPVLDKIDSELLSRNPGMVTPG 359
                  ++ ++DS L    P   TPG
Sbjct: 466 EAIVNQEIIGQLDSYLYGNYPAG-TPG 491

Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytes.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 6

>sp\|Q5QQ56\|XYLT1_CANFA Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ57\|XYLT1_PANTR Xylosyltransferase 1 OS=Pan troglodytes GN=XYLT1 PE=2 SV=1	Back alignment and function description

>sp\|Q86Y38\|XYLT1_HUMAN Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1 SV=1	Back alignment and function description

>sp\|Q811B1\|XYLT1_MOUSE Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ53\|XYLT_DROPS Xylosyltransferase oxt OS=Drosophila pseudoobscura pseudoobscura GN=oxt PE=2 SV=1	Back alignment and function description

>sp\|Q7KVA1\|XYLT_DROME Xylosyltransferase oxt OS=Drosophila melanogaster GN=oxt PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ51\|XYLT2_PANTR Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q9H1B5\|XYLT2_HUMAN Xylosyltransferase 2 OS=Homo sapiens GN=XYLT2 PE=2 SV=2	Back alignment and function description

>sp\|Q5QQ55\|XYLT_CIOIN Xylosyltransferase OS=Ciona intestinalis GN=xt PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		410
224141333		428	predicted protein [Populus trichocarpa]	1.0	0.957	0.778	0.0
255552806		430	acetylglucosaminyltransferase, putative	0.997	0.951	0.758	0.0
449459448		428	PREDICTED: xylosyltransferase 1-like [Cu	0.992	0.950	0.756	0.0
225452656		428	PREDICTED: xylosyltransferase 1 [Vitis v	1.0	0.957	0.775	0.0
224077616		428	predicted protein [Populus trichocarpa]	1.0	0.957	0.764	0.0
356550561		429	PREDICTED: xylosyltransferase 1-like [Gl	0.997	0.953	0.747	0.0
15242199		434	Core-2/I-branching beta-1,6-N-acetylgluc	1.0	0.944	0.718	1e-176
297811643		434	glycosyltransferase family 14 protein [A	1.0	0.944	0.723	1e-176
297805704		445	glycosyltransferase family 14 protein [A	1.0	0.921	0.694	1e-172
15242532		447	Core-2/I-branching beta-1,6-N-acetylgluc	1.0	0.917	0.689	1e-172

>gi\|224141333\|ref\|XP_002324028.1\| predicted protein [Populus trichocarpa] gi\|222867030\|gb\|EEF04161.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/428 (77%), Positives = 369/428 (86%), Gaps = 18/428 (4%)

Query: 1   MKKLKTYYSHFRSHNHPPNKWIFPLAVGSVVSIFLIFLTTLTSP---------------- 44
           MK+LK+YY H R H +   KWIFPLA+GS+VS+FL+FLT +T+                 
Sbjct: 1   MKRLKSYYMHLRHHQNMERKWIFPLAIGSIVSLFLLFLTAITTSDGMSLFPFYRSFSSFS 60

Query: 45  --TATRSSSPLPVSLLPPPPRFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSE 102
                    P+P S LPPPPRFAYLISGS GDG+M+KRTL ALYHPNN YVVHLDR SS+
Sbjct: 61  SKFVETKIHPIPTSNLPPPPRFAYLISGSAGDGSMLKRTLQALYHPNNQYVVHLDRESSD 120

Query: 103 SERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFI 162
            ERLDL NFV    +F +F NV+MITKANLVTYRGPTMVANTLHAAA+LLREGGDWDWFI
Sbjct: 121 EERLDLSNFVKDHPVFLRFGNVRMITKANLVTYRGPTMVANTLHAAAILLREGGDWDWFI 180

Query: 163 NLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYMSKKADV 222
           NLSASDYPLVTQDDLL  FSYLPRDLNFIDHTSNIGWKEFQRAKP+IIDPGLYM+KKADV
Sbjct: 181 NLSASDYPLVTQDDLLHTFSYLPRDLNFIDHTSNIGWKEFQRAKPVIIDPGLYMTKKADV 240

Query: 223 FWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHT 282
           FW+TQ+RSVP+AFKLFTGSAWMALSR FIDY IWGWDNLPRTVLMYYANF+SSPEGYFHT
Sbjct: 241 FWITQRRSVPTAFKLFTGSAWMALSRPFIDYTIWGWDNLPRTVLMYYANFISSPEGYFHT 300

Query: 283 VICNAQEFRNTTVNSDLHFISWDNPPKQHPHYLNLADMQRMVDSNAPFARKFPREDPVLD 342
           VICNAQEF NTTVNSDLHFISWDNPPKQHPH+LNLADMQRM+DSNAPFARKFP++DPVLD
Sbjct: 301 VICNAQEFLNTTVNSDLHFISWDNPPKQHPHHLNLADMQRMIDSNAPFARKFPQDDPVLD 360

Query: 343 KIDSELLSRNPGMVTPGGWCIGSRKNGSDPCSVVGNTTVLRPGPGAKRLGSLITSLLSKE 402
           KIDSELLSR+PGM TPGGWC+GSR+NG+DPCS +GNTTVLRPGPGAKRL ++I++LLS E
Sbjct: 361 KIDSELLSRSPGMFTPGGWCVGSRENGTDPCSAIGNTTVLRPGPGAKRLETMISTLLSNE 420

Query: 403 KFRPGQCK 410
            FRP QCK
Sbjct: 421 NFRPRQCK 428

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255552806\|ref\|XP_002517446.1\| acetylglucosaminyltransferase, putative [Ricinus communis] gi\|223543457\|gb\|EEF44988.1\| acetylglucosaminyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449459448\|ref\|XP_004147458.1\| PREDICTED: xylosyltransferase 1-like [Cucumis sativus] gi\|449531101\|ref\|XP_004172526.1\| PREDICTED: xylosyltransferase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225452656\|ref\|XP_002282083.1\| PREDICTED: xylosyltransferase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224077616\|ref\|XP_002305329.1\| predicted protein [Populus trichocarpa] gi\|222848293\|gb\|EEE85840.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356550561\|ref\|XP_003543654.1\| PREDICTED: xylosyltransferase 1-like [Glycine max]	Back alignment and taxonomy information

>gi|15242199|ref|NP_197009.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gi|9755672|emb|CAC01824.1| putative protein [Arabidopsis thaliana] gi|16209674|gb|AAL14395.1| AT5g15050/F2G14_170 [Arabidopsis thaliana] gi|21554320|gb|AAM63425.1| putative glycosylation enzyme [Arabidopsis thaliana] gi|21700835|gb|AAM70541.1| AT5g15050/F2G14_170 [Arabidopsis thaliana] gi|332004727|gb|AED92110.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297811643\|ref\|XP_002873705.1\| glycosyltransferase family 14 protein [Arabidopsis lyrata subsp. lyrata] gi\|297319542\|gb\|EFH49964.1\| glycosyltransferase family 14 protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|297805704\|ref\|XP_002870736.1\| glycosyltransferase family 14 protein [Arabidopsis lyrata subsp. lyrata] gi\|297316572\|gb\|EFH46995.1\| glycosyltransferase family 14 protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15242532|ref|NP_198815.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gi|10176991|dbj|BAB10223.1| glycosylation enzyme-like protein [Arabidopsis thaliana] gi|30102766|gb|AAP21301.1| At5g39990 [Arabidopsis thaliana] gi|110743106|dbj|BAE99445.1| hypothetical protein [Arabidopsis thaliana] gi|332007116|gb|AED94499.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		410
TAIR\|locus:2178047		447	AT5G39990 [Arabidopsis thalian	0.848	0.778	0.798	3.8e-170
TAIR\|locus:2147880		434	AT5G15050 [Arabidopsis thalian	0.848	0.801	0.818	1e-169
TAIR\|locus:2124009		421	AT4G27480 [Arabidopsis thalian	0.836	0.814	0.640	1.9e-127
TAIR\|locus:2087125		424	AT3G15350 [Arabidopsis thalian	0.836	0.808	0.634	5.7e-124
TAIR\|locus:2020748		447	AT1G03520 [Arabidopsis thalian	0.841	0.771	0.599	2.2e-120
TAIR\|locus:2125502		448	AT4G03340 [Arabidopsis thalian	0.841	0.770	0.596	1.6e-117
TAIR\|locus:2037065		423	AT1G53100 [Arabidopsis thalian	0.829	0.803	0.603	2.9e-110
TAIR\|locus:2096399		378	UNE7 "unfertilized embryo sac	0.7	0.759	0.638	2.8e-105
TAIR\|locus:505006303		384	AT2G37585 [Arabidopsis thalian	0.817	0.872	0.528	2e-100
TAIR\|locus:2026356		395	AT1G71070 [Arabidopsis thalian	0.951	0.987	0.460	5e-99

TAIR\|locus:2178047 AT5G39990 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1557 (553.2 bits), Expect = 3.8e-170, Sum P(2) = 3.8e-170
 Identities = 278/348 (79%), Positives = 311/348 (89%)

Query:    63 RFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFS 122
             RFAYLISGS GDG  ++RTLLALYHPNN YVVHLDR SS  ER +L  ++    LF +F 
Sbjct:   100 RFAYLISGSAGDGKSLRRTLLALYHPNNRYVVHLDRESSREEREELHGYIKNSSLFRRFM 159

Query:   123 NVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182
             NV MI KANLVTYRGPTMVANTLHAAA+LLREG DWDWFINLS+SDYPLVTQDDLL  FS
Sbjct:   160 NVHMIEKANLVTYRGPTMVANTLHAAAILLREGADWDWFINLSSSDYPLVTQDDLLHIFS 219

Query:   183 YLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKRSVPSAFKLFTGSA 242
             +LPRDLNFIDHTSNIGWK  QRAKP+IIDPGLY++KK+DVFWVTQ+RS+P+AFKLFTGSA
Sbjct:   220 HLPRDLNFIDHTSNIGWKASQRAKPVIIDPGLYLNKKSDVFWVTQRRSIPTAFKLFTGSA 279

Query:   243 WMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQEFRNTTVNSDLHFI 302
             WMALSR F+DYCIWGWDNLPRTVLMYY+NFLSSPEGYFHTV+CNA+EFRNTTVNSDLHFI
Sbjct:   280 WMALSRPFVDYCIWGWDNLPRTVLMYYSNFLSSPEGYFHTVLCNAEEFRNTTVNSDLHFI 339

Query:   303 SWDNPPKQHPHYLNLADMQRMVDSNAPFARKFPREDPVLDKIDSELLSRNPGMVTPGGWC 362
             SWDNPPKQHPH+L L DM +MV+SNAPFARKF REDPVLDKID ELL+R PGM+TPGGWC
Sbjct:   340 SWDNPPKQHPHHLTLTDMTKMVNSNAPFARKFRREDPVLDKIDDELLNRGPGMITPGGWC 399

Query:   363 IGSRKNGSDPCSVVGNTTVLRPGPGAKRLGSLITSLLSKEKFRPGQCK 410
             IGS +NGSDPC+V+G+T V+RPGPGA+RL +L+TSLLS E FR  QCK
Sbjct:   400 IGSHENGSDPCAVIGDTDVIRPGPGARRLENLVTSLLSTENFRSKQCK 447

GO:0005886 "plasma membrane" evidence=ISM

GO:0008375 "acetylglucosaminyltransferase activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

TAIR\|locus:2147880 AT5G15050 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124009 AT4G27480 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087125 AT3G15350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2020748 AT1G03520 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125502 AT4G03340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037065 AT1G53100 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2096399 UNE7 "unfertilized embryo sac 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:505006303 AT2G37585 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026356 AT1G71070 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		410
PLN03183		421	PLN03183, PLN03183, acetylglucosaminyltransferase	0.0
pfam02485		242	pfam02485, Branch, Core-2/I-Branching enzyme	2e-80

>gnl\|CDD\|178725 PLN03183, PLN03183, acetylglucosaminyltransferase family protein; Provisional	Back alignment and domain information

 Score =  567 bits (1463), Expect = 0.0
 Identities = 247/418 (59%), Positives = 298/418 (71%), Gaps = 32/418 (7%)

Query: 20  KWIFPLAVGSVVSIFLI-------FLTTLTSPTATRSSSPLP---------------VSL 57
           +W+FPL + S+V +FL+        +++L +  +  S  PL                 S 
Sbjct: 9   RWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSP 68

Query: 58  LPPP-----PRFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFV 112
            PPP     PRFAYL+SGS GD   + RTL ALYHP N YVVHLD  S   ERL+L + V
Sbjct: 69  HPPPVQDKLPRFAYLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRV 128

Query: 113 NGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLV 172
               +F+K  NV MITKANLVTYRGPTMVANTLHA A+LL+   DWDWFINLSASDYPLV
Sbjct: 129 ENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLV 188

Query: 173 TQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKRSVP 232
           TQDDL+  FS L R+LNFI+HTS +GWKE +RA P+IIDPGLY + K+D++WVT +RS+P
Sbjct: 189 TQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRRSLP 248

Query: 233 SAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQEFRN 292
           +AFKLFTGSAWM LSRSF++YCIWGWDNLPRT+LMYY NF+SSPEGYFHTVICN  EF  
Sbjct: 249 TAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAK 308

Query: 293 TTVNSDLHFISWDNPPKQHPHYLNLADMQRMVDSNAPFARKFPREDPVLDKIDSELLSRN 352
           T VN DLH+ISWDNPPKQHPH L+L D ++M+ S A FARKF R+DPVLDKID ELL R 
Sbjct: 309 TAVNHDLHYISWDNPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRK 368

Query: 353 PGMVTPGGWCIGSRKNGSDPCSVVGNTTVLRPGPGAKRLGSLITSLLSKEKFRPGQCK 410
            G  TPGGWC     +G   CS VG+   ++PGPGA+RL  L++ L+ + K    QCK
Sbjct: 369 NGSFTPGGWC-----SGKPKCSRVGDPAKIKPGPGAQRLKGLVSRLVLEAKLGQNQCK 421

Length = 421

>gnl\|CDD\|217062 pfam02485, Branch, Core-2/I-Branching enzyme	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		410
PLN03183		421	acetylglucosaminyltransferase family protein; Prov	100.0
KOG0799		439	consensus Branching enzyme [Carbohydrate transport	100.0
PF02485		244	Branch: Core-2/I-Branching enzyme; InterPro: IPR00	100.0
TIGR03469		384	HonB hopene-associated glycosyltransferase HpnB. T	95.41
PRK11204		420	N-glycosyltransferase; Provisional	90.74
TIGR03472		373	HpnI hopanoid biosynthesis associated glycosyl tra	87.95
TIGR03111		439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	87.86
cd02525		249	Succinoglycan_BP_ExoA ExoA is involved in the bios	85.86
PRK14583		444	hmsR N-glycosyltransferase; Provisional	84.75
cd06439		251	CESA_like_1 CESA_like_1 is a member of the cellulo	81.82
PTZ00260		333	dolichyl-phosphate beta-glucosyltransferase; Provi	81.77
PF07521		43	RMMBL: RNA-metabolising metallo-beta-lactamase; In	80.63
PRK05454		691	glucosyltransferase MdoH; Provisional	80.3

>PLN03183 acetylglucosaminyltransferase family protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=2.5e-116  Score=895.15  Aligned_cols=389  Identities=62%  Similarity=1.102  Sum_probs=360.6

Q ss_pred             CCCceehhHHHHHHHHHHHHHHhh---c-cCCCCC------------C--CC-------CCC--CCCCCCCCCceEEEee
Q 037238           17 PPNKWIFPLAVGSVVSIFLIFLTT---L-TSPTAT------------R--SS-------SPL--PVSLLPPPPRFAYLIS   69 (410)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~------------~--~~-------~~~--~~~~~~~~~kiAYLI~   69 (410)
                      +++||++|++++++++++|+++++   . ++++++            +  .+       .+.  +.++++.||||||||+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI~   85 (421)
T PLN03183          6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLVS   85 (421)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEEE
Confidence            489999999999999988766443   1 111100            0  00       001  1234556999999999


Q ss_pred             ccCCChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhhHHHHH
Q 037238           70 GSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAA  149 (410)
Q Consensus        70 ~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~  149 (410)
                      ||++|.+|++|||++||||+|+||||+|+||+..++.+++..++++|++.+++||+|+++++.|+|||+|||+|||+||+
T Consensus        86 ~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m~  165 (421)
T PLN03183         86 GSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACA  165 (421)
T ss_pred             ecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHHH
Confidence            99889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCcceEEecCCCCCCccccchhhHHhhcCCCCcccccccCcccccccccccceeeCCCCccccCCceEEEeeec
Q 037238          150 VLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKR  229 (410)
Q Consensus       150 ~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~~~~~~NFIe~~~~~~wk~~~R~~~~i~dpgly~~~k~~~~~~~~kR  229 (410)
                      .|++.+.+|||||||||+||||+||+||++.|+++|+|+|||++++..+|++.+|+++++++||+|..++++++|.+++|
T Consensus       166 ~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~R  245 (421)
T PLN03183        166 ILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRR  245 (421)
T ss_pred             HHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhhc
Confidence            99998899999999999999999999988888889999999999988999999999999999999988888889999999


Q ss_pred             ccccchhhccccchhhhhhhhhhhhhcccCCccceeehhhcccccCCCcceEEeecCccccccccccccceeeecCCCCC
Q 037238          230 SVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQEFRNTTVNSDLHFISWDNPPK  309 (410)
Q Consensus       230 ~~P~~~~l~~GS~W~~LsR~fvey~i~~~dn~pr~ll~yf~~~~~pdE~yFqTvl~Ns~~f~~t~vn~~LRyi~W~~~~~  309 (410)
                      .+|.++++|+||+|++|||+|||||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+|||||+|+++++
T Consensus       246 ~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~~~  325 (421)
T PLN03183        246 SLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWDNPPK  325 (421)
T ss_pred             cCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeEEecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcccchhhhhhhhhCCCcccccCCCCCcchhhhhHHhhcCCCCCccCCccccCCCCCCCCCCcccCCCCcccCCcchh
Q 037238          310 QHPHYLNLADMQRMVDSNAPFARKFPREDPVLDKIDSELLSRNPGMVTPGGWCIGSRKNGSDPCSVVGNTTVLRPGPGAK  389 (410)
Q Consensus       310 ~hP~~l~~~D~~~l~~S~alFARKF~~dd~vld~Id~~ll~r~~~~~~~g~w~~~~~~~~~~~c~~~g~~~~~~pg~~~~  389 (410)
                      +||++|+++|+++|++|+++|||||+.|++|||+||++|++|..++++|||||.|     .||||+|||+++|||||||+
T Consensus       326 ~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~-----~~~c~~~~~~~~~~p~~~~~  400 (421)
T PLN03183        326 QHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG-----KPKCSRVGDPAKIKPGPGAQ  400 (421)
T ss_pred             CCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC-----CCcccccCCcCccCCCcHHH
Confidence            9999999999999999999999999999999999999999999999999999986     57999999999999999999


Q ss_pred             hHHHHHHhhcccCCCCCCCCC
Q 037238          390 RLGSLITSLLSKEKFRPGQCK  410 (410)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~c~  410 (410)
                      ||++||++||++++||++||+
T Consensus       401 ~~~~~~~~~~~~~~~~~~~c~  421 (421)
T PLN03183        401 RLKGLVSRLVLEAKLGQNQCK  421 (421)
T ss_pred             HHHHHHHHHhchhccccccCC
Confidence            999999999999999999996

>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB	Back alignment and domain information

>PRK11204 N-glycosyltransferase; Provisional	Back alignment and domain information

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI	Back alignment and domain information

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111	Back alignment and domain information

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan	Back alignment and domain information

>PRK14583 hmsR N-glycosyltransferase; Provisional	Back alignment and domain information

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	Back alignment and domain information

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional	Back alignment and domain information

>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs	Back alignment and domain information

>PRK05454 glucosyltransferase MdoH; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		410
3otk_A		391	Structure And Mechanisim Of Core 2 Beta1,6-N- Acety		5e-11
2gak_A		391	X-ray Crystal Structure Of Murine Leukocyte-type Co		1e-10

>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase Length = 391

Back alignment and structure

Iteration: 1

Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 16/209 (7%) Query: 76 NMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTY 135 M+ R L A+Y P N Y +H+DR + ES +Q + F NV + ++ V Y Sbjct: 97 EMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCF------DNVFVASQLESVVY 150 Query: 136 RGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTS 195 T V L+ L R +W + INLS D+P+ T +++ + N Sbjct: 151 ASWTRVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKM 210 Query: 196 NIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCI 255 +E + + ++D L + K P LF+GSA+ ++R ++ Y + Sbjct: 211 PPNKEERWKKRYAVVDGKLTNTG-------IVKAPPPLKTPLFSGSAYFVVTREYVGYVL 263 Query: 256 WGWDNLPRTVLMYYANFLSSPEGYFHTVI 284 +N LM +A SP+ + I Sbjct: 264 ---ENENIQKLMEWAQDTYSPDEFLWATI 289

PyMOL of 3otk

>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2 B1,6-n- Acetylglucosaminyltransferase (c2gnt-l) Length = 391

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		410
2gak_A		391	Beta-1,6-N-acetylglucosaminyltransferase; glycopro	5e-71
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391	Back alignment and structure

 Score =  227 bits (580), Expect = 5e-71
 Identities = 73/327 (22%), Positives = 119/327 (36%), Gaps = 44/327 (13%)

Query: 54  PVSLLPPPPRFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVN 113
           P++        AY I        M+ R L A+Y P N Y +H+DR + ES    +Q    
Sbjct: 76  PLTKEEVGFPIAYSIVVH-HKIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGI-- 132

Query: 114 GFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVT 173
                + F NV + ++   V Y   T V   L+    L R   +W + INL   D+P+ T
Sbjct: 133 ----ASCFDNVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKT 188

Query: 174 QDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKRSVPS 233
             +++        + N          +E  + +  ++D  L  +          K   P 
Sbjct: 189 NLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTGI-------VKAPPPL 241

Query: 234 AFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQEF--- 290
              LF+GSA+  ++R ++ Y +   +N     LM +A    SP+ +    I    E    
Sbjct: 242 KTPLFSGSAYFVVTREYVGYVL---ENENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGS 298

Query: 291 -------RNTTVNSDLHFISWD-----------NPPKQHPH-----YLNLADMQRMVDSN 327
                    + +N+   F+ W             PP    H          D+  M+  +
Sbjct: 299 FPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQH 358

Query: 328 APFARKF-PREDPVLDKIDSELLSRNP 353
             FA KF    DP   +   E L R  
Sbjct: 359 HLFANKFDMDVDPFAIQCLDEHLRRKA 385

PyMOL of 2gak

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		410
2gak_A		391	Beta-1,6-N-acetylglucosaminyltransferase; glycopro	100.0
3bcv_A		240	Putative glycosyltransferase protein; protein stru	85.69
4hg6_A		802	Cellulose synthase subunit A; membrane translocati	81.43

>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*	Back alignment and structure

Probab=100.00  E-value=4.8e-65  Score=518.59  Aligned_cols=281  Identities=23%  Similarity=0.318  Sum_probs=240.0

Q ss_pred             CCCCCCceEEEeeccCCChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeec
Q 037238           57 LLPPPPRFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYR  136 (410)
Q Consensus        57 ~~~~~~kiAYLI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wg  136 (410)
                      .++.+++|||+|++|+ |+++++||++++|||+|+||||+|++++..++.+++..      ..+++||+|++++..|.||
T Consensus        79 ~~e~~~kiAflil~h~-d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~------~~~f~NV~v~~~~~~v~WG  151 (391)
T 2gak_A           79 KEEVGFPIAYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGI------ASCFDNVFVASQLESVVYA  151 (391)
T ss_dssp             HHHHTSCEEEEEEECS-CHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHH------HHTCTTEEECSSCCCCCTT
T ss_pred             ccccCCCEEEEEEecC-CHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHH------HhcCCCEEEeccCcccccC
Confidence            3455799999999997 99999999999999999999999999998887776542      3478999999999999999


Q ss_pred             CchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhhcCCCCcccccccCccccccccccc--ceeeCCCC
Q 037238          137 GPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAK--PIIIDPGL  214 (410)
Q Consensus       137 g~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~~~~~~NFIe~~~~~~wk~~~R~~--~~i~dpgl  214 (410)
                      |+|||+|+|+||+.||+.+.+|||||||||+||||+|+++|.++|+.+ +|+|||++.++.+|++. |.+  +.+.++++
T Consensus       152 g~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~-~~~nFIe~~~~~~~~~~-R~~~~~~~~~~~l  229 (391)
T 2gak_A          152 SWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCS-TGENNLETEKMPPNKEE-RWKKRYAVVDGKL  229 (391)
T ss_dssp             SHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHT-TTCCBCCBEECCGGGSH-HHHEEEEEETTEE
T ss_pred             CchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhc-CCCceeeccCCCccccc-ceEeeeeccccce
Confidence            999999999999999998789999999999999999999999999875 78999999988888754 332  22334432


Q ss_pred             ccccCCceEEEeeecccccchhhccccchhhhhhhhhhhhhcccCCccceeehhhcccccCCCcceEEeecCc-------
Q 037238          215 YMSKKADVFWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNA-------  287 (410)
Q Consensus       215 y~~~k~~~~~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~dn~pr~ll~yf~~~~~pdE~yFqTvl~Ns-------  287 (410)
                             ..+..++|.+|+++++++|||||+|||+||+||+.  |++++++++||+++++|||+||||++.|+       
T Consensus       230 -------~~~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~  300 (391)
T 2gak_A          230 -------TNTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFP  300 (391)
T ss_dssp             -------EEEEEECCCCSCSSCCEECCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCC
T ss_pred             -------eeecccccCCccccceecccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCccc
Confidence                   23456788889999999999999999999999997  66678889999999999999999997653       


Q ss_pred             --cccccccccccceeeecCCCCC------CCCc----------ccchhhhhhhhhCCCcccccCCC--CCcchhhhhHH
Q 037238          288 --QEFRNTTVNSDLHFISWDNPPK------QHPH----------YLNLADMQRMVDSNAPFARKFPR--EDPVLDKIDSE  347 (410)
Q Consensus       288 --~~f~~t~vn~~LRyi~W~~~~~------~hP~----------~l~~~D~~~l~~S~alFARKF~~--dd~vld~Id~~  347 (410)
                        ..|+++++|+++|||+|+++.+      .||.          +|+.+|+++|.+|+++|||||++  |++|++|||+.
T Consensus       301 ~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~~~d~~~l~~l~~~  380 (391)
T 2gak_A          301 SSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEH  380 (391)
T ss_dssp             SSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCTTTCHHHHHHHHHH
T ss_pred             cccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCCccCHHHHHHHHHH
Confidence              3456677899999999985322      2443          89999999999999999999997  56899999999


Q ss_pred             hhcCCCCC
Q 037238          348 LLSRNPGM  355 (410)
Q Consensus       348 ll~r~~~~  355 (410)
                      |.+|...+
T Consensus       381 l~~r~~~~  388 (391)
T 2gak_A          381 LRRKALEN  388 (391)
T ss_dssp             HHHHHHC-
T ss_pred             Hhhhhhcc
Confidence            98876443

PyMOL of 2gak

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}	Back alignment and structure

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		410
d1qg8a_		255	Spore coat polysaccharide biosynthesis protein Sps	80.87

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=80.87  E-value=2.6  Score=35.79  Aligned_cols=115  Identities=8%  Similarity=0.127  Sum_probs=66.9

Q ss_pred             CceEEEeeccCCChHHHHHHHHHhhc---CCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeee---
Q 037238           62 PRFAYLISGSVGDGNMIKRTLLALYH---PNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTY---  135 (410)
Q Consensus        62 ~kiAYLI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~w---  135 (410)
                      |++..+|.+++ ..+.|++.|+.+-.   +. .=+|=+|-.|+++..+-|+++.       .-.+|+++........   
T Consensus         1 P~vSiiip~yN-~~~~l~~~l~Si~~Qt~~~-~eiivvdd~S~d~t~~~l~~~~-------~~~~i~~~~~~~~~~~~~~   71 (255)
T d1qg8a_           1 PKVSVIMTSYN-KSDYVAKSISSILSQTFSD-FELFIMDDNSNEETLNVIRPFL-------NDNRVRFYQSDISGVKERT   71 (255)
T ss_dssp             CCEEEEEEESS-CTTTHHHHHHHHHTCSCCC-EEEEEEECSCCHHHHHHHGGGG-------GSTTEEEEECCCCSHHHHH
T ss_pred             CEEEEEEecCC-CHHHHHHHHHHHHhCCCCC-eEEEEEECCCCccHHHHHHHhh-------hhccccccccccccccccc
Confidence            68899999997 56789999988742   33 3345556566777666665543       2356887764432111   


Q ss_pred             cCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccc-cchhhHHhhcCCCCcccc
Q 037238          136 RGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVT-QDDLLDAFSYLPRDLNFI  191 (410)
Q Consensus       136 gg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt-~~~i~~~fs~~~~~~NFI  191 (410)
                      ...+.-.|-=.|++.+     +-||++.|-+.|++..+ .+.+...|... .+..++
T Consensus        72 ~~~g~~~a~N~gi~~a-----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~-~~~~~v  122 (255)
T d1qg8a_          72 EKTRYAALINQAIEMA-----EGEYITYATDDNIYMPDRLLKMVRELDTH-PEKAVI  122 (255)
T ss_dssp             SSCHHHHHHHHHHHHC-----CCSEEEEEETTEEECTTHHHHHHHHHHHC-TTCCEE
T ss_pred             ccchhccccccccccc-----ccccccccccccccccchHHHHHHHHHhC-CCCCeE
Confidence            1222222222233332     34899999999998654 33444555433 234444

PyMOL of d1qg8a_