Citrus Sinensis ID: 037252

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MNGDVAVASAYNDDEIGIHIENHGGSGRSGDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRKKAKETKKQLACFIDSKSFSGDKKKENCRTDKGNELN
Secondary Structure (PSIPRED)
cccHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEcccccccccHcHHcccccccccccccccccccccEEEEccccccEEEEEccccccEEEEHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
MNGDVAVAsaynddeigihienhggsgrsgdftdvdfleeepcikcnrqrdenllvcsqsgcpisvhenclscgvkfddvgnfycpycwykceLMRTKELRKKAKETKKQLACfidsksfsgdkkkencrtdkgneln
Flexible Loop (DISEMBL)
MNGDVAVASAYNDDEIGIHienhggsgrsGDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRKKAKETKKQlacfidsksfsgdkkkencrtdkgneln
Low Complexity Region (SEG)
MNGDVAVASAYNDDEIGIHIENHGGSGRSGDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMrtkelrkkaketkkqlaCFIDSKSFSGDKKKENCRTDKGNELN
Disordered region (IsUnstruct)
*************DEIGIHIEN*******GDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKE***********LACFI***********************
Disordered Region (DISOPRED)
***************************************EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELM*******************************************
Disordered Region (DISEMBL)
MNGDVAVASAYNDDEIGIHIENHGGSGRSGDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKEL*********QLACFIDSKSFS*****************
Disordered Region (DISPRO)
**************E******************DVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRKKAKETKKQLACFIDSKSF******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNGDVAVASAYNDDEIGIHIENHGGSGRSGDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRKKAKETKKQLACFIDSKSFSGDKKKENCRTDKGNELN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
296085075	566	unnamed protein product [Vitis vinifera]	0.949	0.231	0.362	1e-20
449453762	510	PREDICTED: uncharacterized protein LOC10	0.840	0.227	0.390	5e-17
357462399	351	hypothetical protein MTR_3g082160 [Medic	0.586	0.230	0.536	2e-16
297739691	774	unnamed protein product [Vitis vinifera]	0.739	0.131	0.404	8e-16
147846688	774	hypothetical protein VITISV_016915 [Viti	0.739	0.131	0.404	8e-16
224065645	472	predicted protein [Populus trichocarpa]	0.797	0.233	0.384	1e-15
356546362	466	PREDICTED: uncharacterized protein LOC10	0.536	0.158	0.487	6e-14
317106598	531	JHL20J20.13 [Jatropha curcas]	0.521	0.135	0.466	1e-12
255571552	814	conserved hypothetical protein [Ricinus	0.514	0.087	0.465	2e-12
255539006	422	hypothetical protein RCOM_1598630 [Ricin	0.652	0.213	0.425	7e-12

>gi|296085075|emb|CBI28490.3| unnamed protein product [Vitis vinifera]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 7/138 (5%)

Query: 2   NGDVAVASAYNDD-EIGIHIENHGGSGR----SGDFTDVDFLEEEPCIKCNRQRDENLLV 56
           NG+ A   A N   E  +  +  G SG     +  + ++++ ++  CIKC    +  +LV
Sbjct: 86  NGEQAHQLAPNSSGETIVGTKQSGASGSWDMSTQAWMEIEWTQQSKCIKCGEGGE--VLV 143

Query: 57  CSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRKKAKETKKQLACFID 116
           CS   C ++VHE C++C   FDD+G+FYCPYCWY+C + ++ E RK+A  +KK L+ F+D
Sbjct: 144 CSDRVCRLAVHEKCMNCSAAFDDMGDFYCPYCWYRCAIAKSNEARKRAMSSKKALSTFLD 203

Query: 117 SKSFSGDKKKENCRTDKG 134
           +K+  G+++KE  ++  G
Sbjct: 204 TKALCGNQQKEKTKSSNG 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453762|ref|XP_004144625.1| PREDICTED: uncharacterized protein LOC101213119 [Cucumis sativus] gi|449520068|ref|XP_004167056.1| PREDICTED: uncharacterized LOC101213119 [Cucumis sativus]

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 7/123 (5%)

Query: 6   AVASAYNDDEIGIHIEN---HGGSGRSGD--FTDVDFLEEEPCIKCNRQRDENLLVCSQS 60
            +AS+   D+   ++E+   H  S +  D     +D  +++ C +C+   D  LLVC++ 
Sbjct: 24  PMASSPLPDQDVPNVEDNTLHDASNKETDDVLDKIDCFQKDTCTRCDESGD--LLVCTEP 81

Query: 61  GCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRKKAKETKKQLACFIDSKSF 120
           GCPI++HE C+SC   FD+ G FYCPYC YK  L+R  ELR+K    K+ L+ FID++  
Sbjct: 82  GCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALIRVNELRRKTMVAKRALSDFIDTRMV 141

Query: 121 SGD 123
            GD
Sbjct: 142 GGD 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462399|ref|XP_003601481.1| hypothetical protein MTR_3g082160 [Medicago truncatula] gi|355490529|gb|AES71732.1| hypothetical protein MTR_3g082160 [Medicago truncatula]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 35  VDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL 94
           VD L++  CI CN+   E LLVCSQ+ CP+SVH  C+    KFDD GNF+CPYC YK  L
Sbjct: 65  VDSLDDNICITCNKLGGE-LLVCSQTDCPVSVHVTCIGSEPKFDDSGNFFCPYCAYKRAL 123

Query: 95  MRTKELRKKAKETKKQLACFID 116
            +T+ELR+KA   KK L+ F++
Sbjct: 124 KKTRELREKAVLAKKALSSFLE 145

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739691|emb|CBI29873.3| unnamed protein product [Vitis vinifera]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 68/121 (56%), Gaps = 19/121 (15%)

Query: 8   ASAYNDDEIGIHIE-----------NHGGSGRSGDFTDVDFLEEEPCIKCNRQRDENLLV 56
           ++ Y+D+E GI +E           NH     +G      + E+  C+KC +  D  LLV
Sbjct: 468 STEYHDEEDGIAMERQNFLSSKCTFNHDSLSIAG------WTEQNLCMKCTK--DGQLLV 519

Query: 57  CSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRKKAKETKKQLACFID 116
           CS SGCP+ VHENCL C   FD++GNFYCP+C Y   +    E +KK    KK+LA FI+
Sbjct: 520 CSSSGCPLVVHENCLGCPPSFDNMGNFYCPFCAYSRAVSEYLESKKKVSLAKKELASFIN 579

Query: 117 S 117
           +
Sbjct: 580 A 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846688|emb|CAN80644.1| hypothetical protein VITISV_016915 [Vitis vinifera]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 68/121 (56%), Gaps = 19/121 (15%)

Query: 8   ASAYNDDEIGIHIE-----------NHGGSGRSGDFTDVDFLEEEPCIKCNRQRDENLLV 56
           ++ Y+D+E GI +E           NH     +G      + E+  C+KC +  D  LLV
Sbjct: 468 STEYHDEEDGIAMERQNFLSSKCTFNHDSLSIAG------WTEQNLCMKCTK--DGQLLV 519

Query: 57  CSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRKKAKETKKQLACFID 116
           CS SGCP+ VHENCL C   FD++GNFYCP+C Y   +    E +KK    KK+LA FI+
Sbjct: 520 CSSSGCPLVVHENCLGCPPSFDNMGNFYCPFCAYSRAVSEYLESKKKVSLAKKELASFIN 579

Query: 117 S 117
           +
Sbjct: 580 A 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065645|ref|XP_002301900.1| predicted protein [Populus trichocarpa] gi|222843626|gb|EEE81173.1| predicted protein [Populus trichocarpa]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 15/125 (12%)

Query: 2   NGDVAVASAYNDDEIGIHIENHGGSGRSGDFTDVDFLEEEPCIKCNRQRDENLLVCSQSG 61
           + +++  S+ +DD++G     +GG          D++E + C+ CN++    LLVC   G
Sbjct: 42  DANLSEKSSRSDDDVG-----NGG----------DWMEVDACLSCNKRGKSKLLVCCVIG 86

Query: 62  CPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRKKAKETKKQLACFIDSKSFS 121
           CP+S+HE C +  + FDD G F CPYC YK E+ R KEL +KA   KK L  FID +   
Sbjct: 87  CPVSIHEKCANFKLAFDDSGRFCCPYCSYKREVGRAKELFRKAMLAKKALLGFIDPEMVG 146

Query: 122 GDKKK 126
           G+ K+
Sbjct: 147 GEAKR 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546362|ref|XP_003541595.1| PREDICTED: uncharacterized protein LOC100787956 [Glycine max]

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 4/78 (5%)

Query: 43  CIKCNRQ----RDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTK 98
           CI CN +    +++ LL+CS  GCP++VH  CL+ G KFD  GNF CPYCWYK  +   +
Sbjct: 37  CIHCNNKGEEAKEDGLLICSGRGCPVAVHATCLATGPKFDGSGNFCCPYCWYKRAVDTCR 96

Query: 99  ELRKKAKETKKQLACFID 116
            LR+KA E K  L+ F+D
Sbjct: 97  RLREKALEAKGDLSRFLD 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106598|dbj|BAJ53106.1| JHL20J20.13 [Jatropha curcas]

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 3/75 (4%)

Query: 24  GGSGRSG-DFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGN 82
           GG    G D +D D+LEE+ C+ CN      LL+CS+ GCPI++H+ C+    ++D+ GN
Sbjct: 58  GGESNVGEDSSDNDWLEEKSCLMCNM--GGQLLLCSEIGCPIALHKECIVSKPRYDEEGN 115

Query: 83  FYCPYCWYKCELMRT 97
           FYCPYCW+K +L  T
Sbjct: 116 FYCPYCWFKLQLSIT 130

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571552|ref|XP_002526722.1| conserved hypothetical protein [Ricinus communis] gi|223533911|gb|EEF35636.1| conserved hypothetical protein [Ricinus communis]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 43  CIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRK 102
           C++C++  D  LLVC+  GCP  VHE CL C  KFD+ GNFYCP+C Y   + +  E +K
Sbjct: 469 CVQCSK--DGQLLVCNAVGCPFVVHEKCLGCSPKFDEKGNFYCPFCAYSYAISKYLEAKK 526

Query: 103 KAKETKKQLACFI 115
            A   +K+L+ FI
Sbjct: 527 TATLARKELSAFI 539

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539006|ref|XP_002510568.1| hypothetical protein RCOM_1598630 [Ricinus communis] gi|223551269|gb|EEF52755.1| hypothetical protein RCOM_1598630 [Ricinus communis]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 4/94 (4%)

Query: 43  CIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRK 102
           C+KCN+     LL+C  +GC I +H  C+    K+D+ GNF+CPYCWYK +  R +E +K
Sbjct: 24  CLKCNKGG--KLLICCGAGCAICLHVECIPRKPKYDEEGNFHCPYCWYKLQQARAQEWKK 81

Query: 103 KAKETKKQLACFIDSKSFS--GDKKKENCRTDKG 134
            A   KK L+ F+DS+      DK K N R   G
Sbjct: 82  MALLAKKALSDFMDSRQVEVGNDKAKLNDRRING 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
TAIR|locus:2006792	429	AT1G14770 [Arabidopsis thalian	0.355	0.114	0.490	3e-10
TAIR|locus:2035372	345	AT1G01150 [Arabidopsis thalian	0.949	0.379	0.277	6.6e-10
TAIR|locus:2200201	314	AT1G68030 [Arabidopsis thalian	0.347	0.152	0.38	2.3e-06

TAIR|locus:2006792 AT1G14770 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 25/51 (49%), Positives = 33/51 (64%)

Query:    40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWY 90
             E  C KC  +++  LL+CS+S C   VH+ CL+C V  D+ GNF CP CWY
Sbjct:   345 ENVCWKC--EKEGTLLICSRSECAAKVHKECLNCPVNVDEYGNFLCPLCWY 393

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035372 AT1G01150 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 38/137 (27%), Positives = 61/137 (44%)

Query:     3 GDVAVASAYNDDEI-GIHIENHGGSGRSGDFTDVDFLEEEPCIKCNRQRDENLLVCSQSG 61
             GD  V SA N      + ++     G S  F   + L E  CI C+   D+ ++ CS + 
Sbjct:    46 GDEDVNSAPNIFTYDNVPLKKRHYLGTSDTFRSFEPLNEHACIVCDIA-DDGVVPCSGNE 104

Query:    62 CPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMXXXXXXXXXXXXXXXXXCFIDSKSFS 121
             CP++VH  C+   +  +D   FYCPYCW+K +                    +  S+  S
Sbjct:   105 CPLAVHRKCVE--LDCEDPATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQYGCSELRS 162

Query:   122 GD--KKKENCRTDKGNE 136
             GD    +EN + + G++
Sbjct:   163 GDIVMTRENSQLENGSD 179

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2200201 AT1G68030 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query:    43 CIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92
             C+ C  +    LL CS  GC + VH+ CL     + D G+FYC  C   C
Sbjct:   229 CVNC--KESGKLLFCSSDGCEVMVHQKCLDSPPSYHDAGDFYCSLCALTC 276


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.139   0.456    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      138       121   0.00091  102 3  11 22  0.38    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.69u 0.16s 11.85t   Elapsed:  00:00:01
  Total cpu time:  11.69u 0.16s 11.85t   Elapsed:  00:00:01
  Start:  Sat May 11 05:52:11 2013   End:  Sat May 11 05:52:12 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
KOG4299	613	consensus PHD Zn-finger protein [General function	98.75
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.61
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.54
KOG0383	696	consensus Predicted helicase [General function pre	98.27
COG5141	669	PHD zinc finger-containing protein [General functi	98.04
KOG1973	274	consensus Chromatin remodeling protein, contains P	97.97
cd04718	148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	97.81
KOG0955	1051	consensus PHD finger protein BR140/LIN-49 [General	97.68
KOG1244	336	consensus Predicted transcription factor Requiem/N	97.5
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	97.21
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.21
COG5034	271	TNG2 Chromatin remodeling protein, contains PhD zi	97.18
KOG0956	900	consensus PHD finger protein AF10 [General functio	96.67
KOG1245	1404	consensus Chromatin remodeling complex WSTF-ISWI,	96.58
KOG4443	694	consensus Putative transcription factor HALR/MLL3,	96.39
KOG1512	381	consensus PHD Zn-finger protein [General function	96.31
KOG4323	464	consensus Polycomb-like PHD Zn-finger protein [Gen	95.42
KOG0957	707	consensus PHD finger protein [General function pre	95.28
PF13771	90	zf-HC5HC2H: PHD-like zinc-binding domain	94.96
KOG1473	1414	consensus Nucleosome remodeling factor, subunit NU	94.78
KOG0954	893	consensus PHD finger protein [General function pre	94.59
PF15446	175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	94.26
KOG1473	1414	consensus Nucleosome remodeling factor, subunit NU	94.03
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	92.12
KOG0956	900	consensus PHD finger protein AF10 [General functio	90.6
KOG4299	613	consensus PHD Zn-finger protein [General function	90.04
KOG0383	696	consensus Predicted helicase [General function pre	88.95
PHA02862	156	5L protein; Provisional	88.91
KOG1246	904	consensus DNA-binding protein jumonji/RBP2/SMCY, c	87.33
KOG0957	707	consensus PHD finger protein [General function pre	87.3
KOG1081	463	consensus Transcription factor NSD1 and related SE	82.24
KOG3612	588	consensus PHD Zn-finger protein [General function	82.23
PHA02825	162	LAP/PHD finger-like protein; Provisional	81.86
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	80.14
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	80.1

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]

Probab=98.75  E-value=2.4e-09  Score=98.48  Aligned_cols=54  Identities=31%  Similarity=0.704  Sum_probs=47.2

Q ss_pred             cccccccccCCCccE---EecCCCCCcccccccccCCC--CccCCCCCccccccchhhhhhHH
Q 037252           40 EEPCIKCNRQRDENL---LVCSQSGCPISVHENCLSCG--VKFDDVGNFYCPYCWYKCELMRT   97 (138)
Q Consensus        40 ~d~C~~C~~~G~e~L---L~Cd~~gCp~s~H~~Cl~~~--~~~dd~G~fyCP~C~yk~a~~~~   97 (138)
                      +++|-.|+..|.  .   ++||  +||.+||..||.+|  +.-.|.|.||||.|.++-.....
T Consensus       253 ~~fCsaCn~~~~--F~~~i~CD--~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~in~~  311 (613)
T KOG4299|consen  253 EDFCSACNGSGL--FNDIICCD--GCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSVINPK  311 (613)
T ss_pred             HHHHHHhCCccc--cccceeec--CCchHHHHhhcCCCCCcccCCCCccccCCCeeeeecccc
Confidence            679999999999  6   9999  89999999999998  55579999999999988655443

>smart00249 PHD PHD zinc finger

Probab=98.61  E-value=3.7e-08  Score=58.46  Aligned_cols=45  Identities=33%  Similarity=0.814  Sum_probs=37.5

Q ss_pred             cccccccCC-CccEEecCCCCCcccccccccCCCCc-cCCCCCcccccc
Q 037252           42 PCIKCNRQR-DENLLVCSQSGCPISVHENCLSCGVK-FDDVGNFYCPYC   88 (138)
Q Consensus        42 ~C~~C~~~G-~e~LL~Cd~~gCp~s~H~~Cl~~~~~-~dd~G~fyCP~C   88 (138)
                      .|..|+..+ .+.+|.|+  +|+..||..|++.+.. ..+...|+||.|
T Consensus         1 ~C~~C~~~~~~~~~i~C~--~C~~~~H~~C~~~~~~~~~~~~~~~C~~C   47 (47)
T smart00249        1 YCSVCGKPDDGGELLQCD--GCDRWYHQTCLGPPLLEEEPDGKWYCPKC   47 (47)
T ss_pred             CcccCCCcCCCCCEEECC--CCCchhhhhhCCCcccCCCCCCCEECcCC
Confidence            477888742 13599999  9999999999998766 678999999987

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.54  E-value=2.6e-08  Score=62.50  Aligned_cols=47  Identities=28%  Similarity=0.706  Sum_probs=37.1

Q ss_pred             cccccccCCC-ccEEecCCCCCcccccccccCCCCcc--CCCCCccccccch
Q 037252           42 PCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKF--DDVGNFYCPYCWY   90 (138)
Q Consensus        42 ~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~--dd~G~fyCP~C~y   90 (138)
                      +|.+|+..+. +.+|.|+  +|...||..|++++...  .+.+.|+||.|.-
T Consensus         1 ~C~vC~~~~~~~~~i~C~--~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~   50 (51)
T PF00628_consen    1 YCPVCGQSDDDGDMIQCD--SCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP   50 (51)
T ss_dssp             EBTTTTSSCTTSSEEEBS--TTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred             eCcCCCCcCCCCCeEEcC--CCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence            4778888333 3599999  99999999999987652  3456999999963

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>KOG0383 consensus Predicted helicase [General function prediction only]

Probab=98.27  E-value=2.8e-07  Score=86.18  Aligned_cols=55  Identities=35%  Similarity=0.718  Sum_probs=49.6

Q ss_pred             CCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252           35 VDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE   93 (138)
Q Consensus        35 ~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a   93 (138)
                      -++-+++.|.+|..+|.  ||+|+  +||.+||..|++.++.-.|.|+|.||.|..+.-
T Consensus        42 ~~~~~~e~c~ic~~~g~--~l~c~--tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~   96 (696)
T KOG0383|consen   42 WDDAEQEACRICADGGE--LLWCD--TCPASFHASCLGPPLTPQPNGEFICPRCFCPKN   96 (696)
T ss_pred             cchhhhhhhhhhcCCCc--EEEec--cccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence            45778999999999999  99999  999999999999988888999999999965544

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=98.04  E-value=2.4e-06  Score=78.57  Aligned_cols=70  Identities=24%  Similarity=0.583  Sum_probs=53.5

Q ss_pred             hhhcccCCCCCCCCCCcCCCcccccccccccCCC---ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           18 IHIENHGGSGRSGDFTDVDFLEEEPCIKCNRQRD---ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        18 ~~~~~h~~s~~~~~~~~~~~~~~d~C~~C~~~G~---e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      +|+|+|--+---+-.++.+ .=++.|.+|.....   +.+++||  ||-++||.+|-|  ..|.|+|.|+|-.|.|..
T Consensus       172 f~~e~~lp~k~vepi~~~d-~~d~~C~~c~~t~~eN~naiVfCd--gC~i~VHq~CYG--I~f~peG~WlCrkCi~~~  244 (669)
T COG5141         172 FFFEHGLPDKHVEPIEPSD-EFDDICTKCTSTHNENSNAIVFCD--GCEICVHQSCYG--IQFLPEGFWLCRKCIYGE  244 (669)
T ss_pred             HhhhccCccccccccCCch-hhhhhhHhccccccCCcceEEEec--Ccchhhhhhccc--ceecCcchhhhhhhcccc
Confidence            5666666554222223322 22689999998776   4799999  999999999999  899999999999998753

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]

Probab=97.97  E-value=3.2e-06  Score=70.52  Aligned_cols=46  Identities=28%  Similarity=0.673  Sum_probs=39.4

Q ss_pred             cccccccCCCccEEecCCCCCc-ccccccccCCCCccCCCCCccccccchhh
Q 037252           42 PCIKCNRQRDENLLVCSQSGCP-ISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        42 ~C~~C~~~G~e~LL~Cd~~gCp-~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      +|- |...|+  -+-||..+|| -=||..|+|  +...|.|.||||.|.-..
T Consensus       223 ~Cn-qvsyg~--Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~  269 (274)
T KOG1973|consen  223 ICN-QVSYGK--MIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN  269 (274)
T ss_pred             Eec-cccccc--ccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence            444 667777  9999999999 779999999  889999999999997543

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=97.81  E-value=4.2e-06  Score=65.73  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             cccccccCCCCccCCCCCccccccchhhhhhHHHH
Q 037252           65 SVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKE   99 (138)
Q Consensus        65 s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~~~~~e   99 (138)
                      .||..||.+|++-.|+|+|+||.|..+.....+..
T Consensus         1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~~~   35 (148)
T cd04718           1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQSAMP   35 (148)
T ss_pred             CcccccCCCCCCCCCCCCcCCCCCcCCCCCCcccc
Confidence            48999999999999999999999998776655543

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]

Probab=97.68  E-value=2.2e-05  Score=76.49  Aligned_cols=76  Identities=22%  Similarity=0.434  Sum_probs=58.6

Q ss_pred             cchhhcccCCCCCCCCCCcCCCcccccccccccCCC---ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           16 IGIHIENHGGSGRSGDFTDVDFLEEEPCIKCNRQRD---ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        16 ~~~~~~~h~~s~~~~~~~~~~~~~~d~C~~C~~~G~---e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      ..+-.|.||-+--.++..+.+..++..|-+|.++--   .-+|.||  +|-++||..|.|  .+++|+|.|+|-.|.+..
T Consensus       195 dr~eke~~f~~~e~~~~~~~~~~~D~~C~iC~~~~~~n~n~ivfCD--~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~  270 (1051)
T KOG0955|consen  195 DRLEKESYFKNYELGDPKDALLEEDAVCCICLDGECQNSNVIVFCD--GCNLAVHQECYG--IPFIPEGQWLCRRCLQSP  270 (1051)
T ss_pred             hhHHHHHHhhhhhccCCCccccCCCccceeecccccCCCceEEEcC--CCcchhhhhccC--CCCCCCCcEeehhhccCc
Confidence            333444455555444555566667889999988754   3689999  999999999999  889999999999999877


Q ss_pred             hhh
Q 037252           93 ELM   95 (138)
Q Consensus        93 a~~   95 (138)
                      +..
T Consensus       271 ~~~  273 (1051)
T KOG0955|consen  271 QRP  273 (1051)
T ss_pred             Ccc
Confidence            653

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]

Probab=97.50  E-value=4.8e-05  Score=65.91  Aligned_cols=49  Identities=29%  Similarity=0.618  Sum_probs=41.2

Q ss_pred             ccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccc
Q 037252           39 EEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCW   89 (138)
Q Consensus        39 ~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~   89 (138)
                      +=-.|.+|+-+.+ +.||+||  .|-+.||-.||.+|+...|+|-|.|-.|.
T Consensus       280 eck~csicgtsenddqllfcd--dcdrgyhmyclsppm~eppegswsc~KOG  329 (336)
T KOG1244|consen  280 ECKYCSICGTSENDDQLLFCD--DCDRGYHMYCLSPPMVEPPEGSWSCHLCL  329 (336)
T ss_pred             ecceeccccCcCCCceeEeec--ccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence            3446777765433 3499999  99999999999999999999999999996

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=97.21  E-value=7e-05  Score=45.92  Aligned_cols=34  Identities=29%  Similarity=0.764  Sum_probs=18.2

Q ss_pred             cEEecCCCCCcccccccccCCCCccCCCCCccccccc
Q 037252           53 NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCW   89 (138)
Q Consensus        53 ~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~   89 (138)
                      .||.|+  +|.++||.+|-|.... .+..+|+|-.|.
T Consensus         3 ~ll~C~--~C~v~VH~~CYGv~~~-~~~~~W~C~~C~   36 (36)
T PF13831_consen    3 PLLFCD--NCNVAVHQSCYGVSEV-PDGDDWLCDRCE   36 (36)
T ss_dssp             EEEE-S--SS--EEEHHHHT-SS---SS-----HHH-
T ss_pred             ceEEeC--CCCCcCChhhCCcccC-CCCCcEECCcCC
Confidence            399999  9999999999996433 333379998873

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.21  E-value=0.00033  Score=67.64  Aligned_cols=67  Identities=25%  Similarity=0.484  Sum_probs=52.3

Q ss_pred             CcccccccccccCCC-ccEEecCCCCCccc-ccccccCCCCccCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 037252           37 FLEEEPCIKCNRQRD-ENLLVCSQSGCPIS-VHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRKKAKETKK  109 (138)
Q Consensus        37 ~~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s-~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~~~~~e~kk~a~~AkK  109 (138)
                      ..+.--|..|..... |-||.|+  +|-.. ||..||.+.+.-.|.+.|||+-|..-    .+.+.+..+..|-.
T Consensus       212 ~~E~~~C~IC~~~DpEdVLLLCD--sCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL----~~~eh~~~~~~~~~  280 (1134)
T KOG0825|consen  212 SQEEVKCDICTVHDPEDVLLLCD--SCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL----EITEHKDFTLKTEE  280 (1134)
T ss_pred             ccccccceeeccCChHHhheeec--ccccceeeccccCcccccccccceecCcchhh----hhhhhhHHHHHHHH
Confidence            344568999999887 5799999  99999 99999998777789999999999853    34444554444444

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

Probab=97.18  E-value=0.00019  Score=61.14  Aligned_cols=57  Identities=28%  Similarity=0.637  Sum_probs=43.4

Q ss_pred             CCCCCCcCC--CcccccccccccC--CCccEEecCCCCCccc-ccccccCCCCccCCCCCccccccc
Q 037252           28 RSGDFTDVD--FLEEEPCIKCNRQ--RDENLLVCSQSGCPIS-VHENCLSCGVKFDDVGNFYCPYCW   89 (138)
Q Consensus        28 ~~~~~~~~~--~~~~d~C~~C~~~--G~e~LL~Cd~~gCp~s-~H~~Cl~~~~~~dd~G~fyCP~C~   89 (138)
                      .+.+.++.+  -.++-+| .|...  |+  .+-||+..|++- ||..|+|  +.-.|.|-||||.|.
T Consensus       207 ~~~~vss~d~se~e~lYC-fCqqvSyGq--MVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk  268 (271)
T COG5034         207 KSRGVSSEDNSEGEELYC-FCQQVSYGQ--MVACDNANCKREWFHLECVG--LKEPPKGKWYCPECK  268 (271)
T ss_pred             cccCcCccccccCceeEE-Eeccccccc--ceecCCCCCchhheeccccc--cCCCCCCcEeCHHhH
Confidence            444444444  2334455 46654  77  999999999996 7999999  888999999999996

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=96.67  E-value=0.00078  Score=64.24  Aligned_cols=47  Identities=28%  Similarity=0.755  Sum_probs=39.2

Q ss_pred             cccccccCCC--c-cEEecCCCCCcccccccccCCCCccCCCCCccccccch
Q 037252           42 PCIKCNRQRD--E-NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWY   90 (138)
Q Consensus        42 ~C~~C~~~G~--e-~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~y   90 (138)
                      -|.+|.+.--  | -|+.|||-.|.++||.-|-+  ..-.|.|.|||-.|.-
T Consensus         7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCes   56 (900)
T KOG0956|consen    7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCES   56 (900)
T ss_pred             ceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhh
Confidence            4778865432  2 49999999999999999999  6678999999999963

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]

Probab=96.58  E-value=0.00047  Score=69.03  Aligned_cols=55  Identities=25%  Similarity=0.595  Sum_probs=48.8

Q ss_pred             CcccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252           37 FLEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE   93 (138)
Q Consensus        37 ~~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a   93 (138)
                      ....-+|-+|...++ +.++.|+  +|--.||..|+-+-+...+.|+|+||.|.-.+-
T Consensus      1105 s~~~~~c~~cr~k~~~~~m~lc~--~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCD--ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred             ccchhhhhhhhhcccchhhhhhH--hhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence            344669999999988 5999999  999999999999999999999999999985553

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]

Probab=96.39  E-value=0.0015  Score=61.51  Aligned_cols=50  Identities=24%  Similarity=0.497  Sum_probs=44.2

Q ss_pred             ccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           41 EPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        41 d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      -.|..|+..|+ .+++.|+  +|-++||-.|+.++..-.++|-|+||.|.-=+
T Consensus        69 rvCe~c~~~gD~~kf~~Ck--~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~  119 (694)
T KOG4443|consen   69 RVCEACGTTGDPKKFLLCK--RCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCR  119 (694)
T ss_pred             eeeeeccccCCcccccccc--cccccccccccCCccccccCcccccHHHHhhh
Confidence            46888888777 5899999  99999999999999999999999999987433

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]

Probab=96.31  E-value=0.0019  Score=56.70  Aligned_cols=46  Identities=24%  Similarity=0.463  Sum_probs=40.5

Q ss_pred             cccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCcccc-ccc
Q 037252           40 EEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCP-YCW   89 (138)
Q Consensus        40 ~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP-~C~   89 (138)
                      =.+|+.|++.-. +..|+||  .|-+.||.-|+|  +.-.|.|.|.|- ||.
T Consensus       314 C~lC~IC~~P~~E~E~~FCD--~CDRG~HT~CVG--L~~lP~G~WICD~~C~  361 (381)
T KOG1512|consen  314 CELCRICLGPVIESEHLFCD--VCDRGPHTLCVG--LQDLPRGEWICDMRCR  361 (381)
T ss_pred             cHhhhccCCcccchheeccc--cccCCCCccccc--cccccCccchhhhHHH
Confidence            458999998876 4899999  999999999999  888999999997 564

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]

Probab=95.42  E-value=0.0056  Score=55.65  Aligned_cols=63  Identities=21%  Similarity=0.381  Sum_probs=49.6

Q ss_pred             CCcccccccccccCCC---ccEEecCCCCCcccccccccCCCCc----cCCCCCccccccchhhhhhHHHHHH
Q 037252           36 DFLEEEPCIKCNRQRD---ENLLVCSQSGCPISVHENCLSCGVK----FDDVGNFYCPYCWYKCELMRTKELR  101 (138)
Q Consensus        36 ~~~~~d~C~~C~~~G~---e~LL~Cd~~gCp~s~H~~Cl~~~~~----~dd~G~fyCP~C~yk~a~~~~~e~k  101 (138)
                      ...|.. |.+|.-+|.   .++|.|+  +|---||.-|.-+..+    -|+...|||-.|.+.....+..+++
T Consensus       165 ~~~n~q-c~vC~~g~~~~~NrmlqC~--~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~t~~  234 (464)
T KOG4323|consen  165 HKVNLQ-CSVCYCGGPGAGNRMLQCD--KCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRLTLR  234 (464)
T ss_pred             ccccce-eeeeecCCcCccceeeeec--ccccHHHHHhccCCCCHhhccCccceEeehhhccchhhccccccc
Confidence            344444 999986654   3899999  9999999999986433    2688999999999998877766666

>KOG0957 consensus PHD finger protein [General function prediction only]

Probab=95.28  E-value=0.0067  Score=56.59  Aligned_cols=47  Identities=28%  Similarity=0.559  Sum_probs=42.6

Q ss_pred             cccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCC----cccccc
Q 037252           40 EEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGN----FYCPYC   88 (138)
Q Consensus        40 ~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~----fyCP~C   88 (138)
                      ...|.+|++.-+ -.|+.||  +|-+.||.-||++|++-.|..+    |.|..|
T Consensus       544 ~ysCgiCkks~dQHll~~CD--tC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC  595 (707)
T KOG0957|consen  544 NYSCGICKKSTDQHLLTQCD--TCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC  595 (707)
T ss_pred             ceeeeeeccchhhHHHhhcc--hhhceeeccccCCccccCcccccCcceeeccc
Confidence            578999999876 4789999  9999999999999998888877    999999

>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain

Probab=94.96  E-value=0.0097  Score=40.71  Aligned_cols=47  Identities=26%  Similarity=0.590  Sum_probs=35.9

Q ss_pred             cccccccccC-CCccEEecCCCCCcccccccccCCCCcc---CCCCCcccccc
Q 037252           40 EEPCIKCNRQ-RDENLLVCSQSGCPISVHENCLSCGVKF---DDVGNFYCPYC   88 (138)
Q Consensus        40 ~d~C~~C~~~-G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~---dd~G~fyCP~C   88 (138)
                      ...|..|++. |-  .+.|...+|..+||..|.-...-+   ++...++-.||
T Consensus        36 ~~~C~~C~~~~Ga--~i~C~~~~C~~~fH~~CA~~~~~~~~~~~~~~~~~~~C   86 (90)
T PF13771_consen   36 KLKCSICKKKGGA--CIGCSHPGCSRSFHVPCARKAGCFIEFDEDNGKFRIFC   86 (90)
T ss_pred             CCCCcCCCCCCCe--EEEEeCCCCCcEEChHHHccCCeEEEEccCCCceEEEC
Confidence            4689999999 99  999999999999999998853322   22334555555

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]

Probab=94.78  E-value=0.018  Score=57.59  Aligned_cols=81  Identities=19%  Similarity=0.282  Sum_probs=61.4

Q ss_pred             eecccccCccchhhcc-cCCCC---CC-----CCCCcCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCcc
Q 037252            7 VASAYNDDEIGIHIEN-HGGSG---RS-----GDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKF   77 (138)
Q Consensus         7 ~~~~~~~~~~~~~~~~-h~~s~---~~-----~~~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~   77 (138)
                      |-.+|-.--|...++- ||++-   ++     +=++.+...=+|.|..|.+.|.  ||||-  +||+.||-+|+-.|.--
T Consensus       302 ~~~eY~~~pv~~klkILQ~L~Dq~l~~~s~R~e~~se~~~~~ddhcrf~~d~~~--~lc~E--t~prvvhlEcv~hP~~~  377 (1414)
T KOG1473|consen  302 VEDEYPYRPVSNKLKILQFLCDQFLTVNSLRDEIDSEGEIEYDDHCRFCHDLGD--LLCCE--TCPRVVHLECVFHPRFA  377 (1414)
T ss_pred             ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccceeecccccccCcccc--eeecc--cCCceEEeeecCCcccc
Confidence            3345555555555555 66655   11     2245555666899999999999  99999  99999999999987777


Q ss_pred             CCCCCccccccchh
Q 037252           78 DDVGNFYCPYCWYK   91 (138)
Q Consensus        78 dd~G~fyCP~C~yk   91 (138)
                      .++..|-|-.|.+-
T Consensus       378 ~~s~~~e~evc~~h  391 (1414)
T KOG1473|consen  378 VPSAFWECEVCNIH  391 (1414)
T ss_pred             CCCccchhhhhhhh
Confidence            89999999999743

>KOG0954 consensus PHD finger protein [General function prediction only]

Probab=94.59  E-value=0.017  Score=55.72  Aligned_cols=49  Identities=24%  Similarity=0.617  Sum_probs=42.0

Q ss_pred             ccccccccccCCC---ccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252           39 EEEPCIKCNRQRD---ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        39 ~~d~C~~C~~~G~---e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      |+-+|-+|..+.-   ..+++||  .|-+.||..|.|  ..-+|+|.|.|--|...
T Consensus       270 edviCDvCrspD~e~~neMVfCd--~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg  321 (893)
T KOG0954|consen  270 EDVICDVCRSPDSEEANEMVFCD--KCNICVHQACYG--ILEVPEGPWLCRTCALG  321 (893)
T ss_pred             ccceeceecCCCccccceeEEec--cchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence            6778999988722   1699999  999999999999  77789999999999864

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain

Probab=94.26  E-value=0.023  Score=46.14  Aligned_cols=28  Identities=36%  Similarity=0.865  Sum_probs=23.4

Q ss_pred             ccccc------cCCCccEEecCCCCCcccccccccCCC
Q 037252           43 CIKCN------RQRDENLLVCSQSGCPISVHENCLSCG   74 (138)
Q Consensus        43 C~~C~------~~G~e~LL~Cd~~gCp~s~H~~Cl~~~   74 (138)
                      |-.|.      ..|+  |+.|-  ||..|||..|||+-
T Consensus         2 C~~C~~~g~~~~kG~--Lv~CQ--GCs~sYHk~CLG~R   35 (175)
T PF15446_consen    2 CDTCGYEGDDRNKGP--LVYCQ--GCSSSYHKACLGPR   35 (175)
T ss_pred             cccccCCCCCccCCC--eEEcC--ccChHHHhhhcCCc
Confidence            67775      3466  99999  99999999999963

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]

Probab=94.03  E-value=0.015  Score=58.21  Aligned_cols=58  Identities=16%  Similarity=0.071  Sum_probs=49.3

Q ss_pred             CCcCCCcccccccccccCCCccEEecCCCCCcccccc-cccC--CCCccCCCCCccccccchhh
Q 037252           32 FTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHE-NCLS--CGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        32 ~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~-~Cl~--~~~~~dd~G~fyCP~C~yk~   92 (138)
                      .++-=|++.+-|++|++++.  +|+|. ++||..||. .||+  .--.+.+.|-|+||.|..++
T Consensus       420 ~gr~ywfi~rrl~Ie~~det--~l~yy-sT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq  480 (1414)
T KOG1473|consen  420 YGRKYWFISRRLRIEGMDET--LLWYY-STCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ  480 (1414)
T ss_pred             cccchhceeeeeEEecCCCc--EEEEe-cCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence            44445999999999999999  99999 349999999 9999  44566799999999998765

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=92.12  E-value=0.066  Score=38.04  Aligned_cols=33  Identities=24%  Similarity=0.630  Sum_probs=28.9

Q ss_pred             ccccccccccC-CCccEEecCCCCCcccccccccCC
Q 037252           39 EEEPCIKCNRQ-RDENLLVCSQSGCPISVHENCLSC   73 (138)
Q Consensus        39 ~~d~C~~C~~~-G~e~LL~Cd~~gCp~s~H~~Cl~~   73 (138)
                      ....|..|+.. |-  ++.|+..+|..+||..|.-.
T Consensus        54 ~~~~C~iC~~~~G~--~i~C~~~~C~~~fH~~CA~~   87 (110)
T PF13832_consen   54 FKLKCSICGKSGGA--CIKCSHPGCSTAFHPTCARK   87 (110)
T ss_pred             cCCcCcCCCCCCce--eEEcCCCCCCcCCCHHHHHH
Confidence            35799999995 77  99999888999999999864

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=90.60  E-value=0.11  Score=50.22  Aligned_cols=53  Identities=32%  Similarity=0.820  Sum_probs=43.1

Q ss_pred             cccccccccCCCc------cEEecCCCCCcccccccccCC-CCccCCCCC-----ccccccchhh
Q 037252           40 EEPCIKCNRQRDE------NLLVCSQSGCPISVHENCLSC-GVKFDDVGN-----FYCPYCWYKC   92 (138)
Q Consensus        40 ~d~C~~C~~~G~e------~LL~Cd~~gCp~s~H~~Cl~~-~~~~dd~G~-----fyCP~C~yk~   92 (138)
                      .-.|++|+..|.+      --+-|...+|-.+||.+|.-. .+-.+++|+     -||-||.|-.
T Consensus       117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf  181 (900)
T KOG0956|consen  117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF  181 (900)
T ss_pred             cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence            4589999999764      368899999999999999876 466677766     4999999854

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]

Probab=90.04  E-value=0.21  Score=47.04  Aligned_cols=50  Identities=22%  Similarity=0.298  Sum_probs=38.4

Q ss_pred             CCcCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccc
Q 037252           32 FTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCW   89 (138)
Q Consensus        32 ~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~   89 (138)
                      ..+..|  -..|-.|..+|+  +|+|+  .||.+||..|.+..+.  +.-.++|-.|.
T Consensus        41 ~~~~k~--~ts~~~~~~~gn--~~~~~--~~~~s~h~~~~~~~~s--p~~~~~~~~~~   90 (613)
T KOG4299|consen   41 RRSGKA--ATSCGICKSGGN--LLCCD--HCPASFHLECDKPPLS--PDLKGSEINCS   90 (613)
T ss_pred             ccccch--hhhcchhhhcCC--ccccc--cCccccchhccCcccC--ccccccccccc
Confidence            344444  889999999999  99999  9999999999996544  55445544444

>KOG0383 consensus Predicted helicase [General function prediction only]

Probab=88.95  E-value=0.082  Score=50.26  Aligned_cols=51  Identities=18%  Similarity=0.240  Sum_probs=47.3

Q ss_pred             CcccccccccccCCCccEEecCCCCCcccccccccCC-CCccCCCCCccccccchh
Q 037252           37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSC-GVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~-~~~~dd~G~fyCP~C~yk   91 (138)
                      .+.++.|-.|.+.++  +|.|.  .|+..+|..|+.+ |++..+-|.|-||.|+-+
T Consensus       503 ~~~d~~~~~~~~~l~--~l~~p--~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~  554 (696)
T KOG0383|consen  503 EFHDISCEEQIKKLH--LLLCP--HMLRRLKLDVLKPMPLKTELIGRVELSPCQKK  554 (696)
T ss_pred             hcchhhHHHHHHhhc--cccCc--hhhhhhhhhhccCCCccceeEEEEecCHHHHH
Confidence            556789999999999  99999  9999999999998 999999999999999843

>PHA02862 5L protein; Provisional

Probab=88.91  E-value=0.11  Score=41.54  Aligned_cols=53  Identities=23%  Similarity=0.350  Sum_probs=43.7

Q ss_pred             cccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhh
Q 037252           40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL   94 (138)
Q Consensus        40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~   94 (138)
                      .+.|+.|...+++.+-+|-=+|=-.-+|.+||..  =...++.-+||.|.++...
T Consensus         2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~--WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQL--WINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CCEEEEecCcCCCCcccccccCcchhHHHHHHHH--HHhcCCCcCccCCCCeEEE
Confidence            4789999999987778877557788999999984  3357889999999987765

>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]

Probab=87.33  E-value=0.5  Score=45.26  Aligned_cols=55  Identities=31%  Similarity=0.726  Sum_probs=49.1

Q ss_pred             CCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252           35 VDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        35 ~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      ........|..|.++..+.++.|+  +|--++|..|...+++..+.|+|.||.|...
T Consensus       150 ~~~~~~~~~~~~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (904)
T KOG1246|consen  150 VEFIDYPQCNTCSKGKEEKLLLCD--SCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT  204 (904)
T ss_pred             cccccchhhhccccCCCccceecc--cccCcccccccCCCCCcCCcCcccCCccccc
Confidence            456677899999999976666888  9999999999999999999999999999866

>KOG0957 consensus PHD finger protein [General function prediction only]

Probab=87.30  E-value=0.53  Score=44.41  Aligned_cols=51  Identities=29%  Similarity=0.647  Sum_probs=36.5

Q ss_pred             cccccccccCCC---ccEEecCCCCCcccccccccCCC-----CccCC---CCCccccccchhh
Q 037252           40 EEPCIKCNRQRD---ENLLVCSQSGCPISVHENCLSCG-----VKFDD---VGNFYCPYCWYKC   92 (138)
Q Consensus        40 ~d~C~~C~~~G~---e~LL~Cd~~gCp~s~H~~Cl~~~-----~~~dd---~G~fyCP~C~yk~   92 (138)
                      -.+|-+|-..-.   ..+|.|+  .|-+.||..|-|..     +....   ..-|||--|.|-.
T Consensus       119 ~~iCcVClg~rs~da~ei~qCd--~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gv  180 (707)
T KOG0957|consen  119 AVICCVCLGQRSVDAGEILQCD--KCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGV  180 (707)
T ss_pred             ceEEEEeecCccccccceeecc--ccCceecccccccccccccCCCCccCCCCchhhhhHhcCC
Confidence            348999964322   1499999  99999999999964     22222   2679998887754

>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]

Probab=82.24  E-value=1.3  Score=40.11  Aligned_cols=43  Identities=19%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             CCCCCcCCCcccccccccccCCCccEEecC------CCCCcccccccccCC
Q 037252           29 SGDFTDVDFLEEEPCIKCNRQRDENLLVCS------QSGCPISVHENCLSC   73 (138)
Q Consensus        29 ~~~~~~~~~~~~d~C~~C~~~G~e~LL~Cd------~~gCp~s~H~~Cl~~   73 (138)
                      ..+.....-++.+.|-+|.++|.  |+.|+      -.+||.++|..|...
T Consensus        78 ~~~~~~~~~~~~~~c~vc~~ggs--~v~~~s~~~~~~r~c~~~~~~~c~~~  126 (463)
T KOG1081|consen   78 EPGSRRHPKIEPSECFVCFKGGS--LVTCKSRIQAPHRKCKPAQLEKCSKR  126 (463)
T ss_pred             CCCchhccCCCcchhccccCCCc--cceeccccccccccCcCccCcccccC
Confidence            34455566778899999999999  99999      788888888888775

>KOG3612 consensus PHD Zn-finger protein [General function prediction only]

Probab=82.23  E-value=1.3  Score=41.77  Aligned_cols=47  Identities=26%  Similarity=0.325  Sum_probs=39.3

Q ss_pred             ccccccccCCCccEEecCCCCCcccccccccCCCCcc-CCCCCccccccchh
Q 037252           41 EPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYK   91 (138)
Q Consensus        41 d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk   91 (138)
                      -+|-.|..+|.  +|.|+  .|-++||..|+.+.... +-+--|-||.|.--
T Consensus        61 ~~cfechlpg~--vl~c~--vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~  108 (588)
T KOG3612|consen   61 PFCFECHLPGA--VLKCI--VCHRSFHENCQSPDPQKRNYSVPSDKPQPYSF  108 (588)
T ss_pred             cccccccCCcc--eeeee--hhhccccccccCcchhhccccccccCCccccc
Confidence            38999999999  99999  99999999999975544 35567889988643

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=81.86  E-value=0.47  Score=38.18  Aligned_cols=57  Identities=21%  Similarity=0.318  Sum_probs=41.9

Q ss_pred             CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhhh
Q 037252           37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELM   95 (138)
Q Consensus        37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~~   95 (138)
                      +..+..|+.|..+++...-+|.=.|=--.+|.+|+.  .=.+.+++-.||.|.++....
T Consensus         5 s~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~--rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          5 SLMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLE--EWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCCCeeEecCCCCCCccCCcccCCCchHHHHHHHH--HHHhcCCCCcccccCCeEEEE
Confidence            445789999998886434456533556688999998  344567999999998876654

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=80.14  E-value=0.45  Score=30.49  Aligned_cols=46  Identities=28%  Similarity=0.556  Sum_probs=29.0

Q ss_pred             ccccccc---CCCccEEecCCCCCcccccccccCCCCccCCCCCccccccc
Q 037252           42 PCIKCNR---QRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCW   89 (138)
Q Consensus        42 ~C~~C~~---~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~   89 (138)
                      +|+.|..   +++.-+.+|.=.|--.-||.+||.  .=+..++.-.||.|.
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~--~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLE--RWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHH--HHHHHcCCCcCCCCC
Confidence            4788886   333244566522334679999998  334455566899883

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=80.10  E-value=0.26  Score=33.61  Aligned_cols=54  Identities=24%  Similarity=0.304  Sum_probs=20.7

Q ss_pred             ccccccccC----CCccEEecCCCCCcccccccccCCCCccCC-------CCCccccccchhhhh
Q 037252           41 EPCIKCNRQ----RDENLLVCSQSGCPISVHENCLSCGVKFDD-------VGNFYCPYCWYKCEL   94 (138)
Q Consensus        41 d~C~~C~~~----G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd-------~G~fyCP~C~yk~a~   94 (138)
                      ..|.+|-..    ++.-.+.|+...|...||..||..-....+       .-..-||+|.-+...
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            457777643    322358999999999999999984211111       122349999865443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	99.56
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	99.53
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	99.52
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	99.5
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	99.5
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	99.5
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	99.48
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	99.44
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	99.41
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	99.41
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	99.4
2yt5_A	66	Metal-response element-binding transcription facto	99.39
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	99.36
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	99.34
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	99.3
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	99.3
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	99.29
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	99.26
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	99.21
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	99.17
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	99.11
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	99.06
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	99.05
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	99.03
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	99.03
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	99.0
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	98.99
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	98.97
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	98.97
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	98.92
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	98.9
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	98.88
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	98.8
1weu_A	91	Inhibitor of growth family, member 4; structural g	98.72
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	98.57
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	98.53
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	98.35
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	98.25
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	98.05
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	98.04
1wee_A	72	PHD finger family protein; structural genomics, PH	98.02
1wew_A	78	DNA-binding family protein; structural genomics, P	98.0
1we9_A	64	PHD finger family protein; structural genomics, PH	97.93
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	97.75
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	97.73
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	97.72
1wem_A	76	Death associated transcription factor 1; structura	97.56
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	97.21
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	97.11
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	96.95
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	96.45
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	96.27
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	96.11
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	95.89
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	95.55
3kv5_D	488	JMJC domain-containing histone demethylation prote	95.29
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	95.04
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	95.0
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	94.68
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	93.88
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	93.7
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	90.0
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	87.78
2lq6_A	87	Bromodomain-containing protein 1; PHD finger, meta	87.52
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	84.77
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	84.07
2ect_A	78	Ring finger protein 126; metal binding protein, st	82.91
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	82.34

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.56  E-value=4.6e-15  Score=105.77  Aligned_cols=67  Identities=19%  Similarity=0.368  Sum_probs=55.7

Q ss_pred             cccCCCCCCCCCCcCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           21 ENHGGSGRSGDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        21 ~~h~~s~~~~~~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      -+|-+|..+.. ......+++.|.+|+++|+  ||+||  +||.+||..|+.++++..|+|+||||.|....
T Consensus         7 ~~~~~~~~~~~-~~~~d~n~~~C~vC~~~g~--LL~CD--~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~   73 (88)
T 1fp0_A            7 HHHHGSDIIDE-FGTLDDSATICRVCQKPGD--LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   73 (88)
T ss_dssp             CCCSSSCCCCC-CCSSSSSSSCCSSSCSSSC--CEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             ccccccccccc-ccccCCCCCcCcCcCCCCC--EEECC--CCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence            34667765533 2333567889999999999  99999  99999999999999998999999999999654

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=99.53  E-value=2.7e-15  Score=99.87  Aligned_cols=55  Identities=27%  Similarity=0.631  Sum_probs=49.4

Q ss_pred             CCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252           35 VDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE   93 (138)
Q Consensus        35 ~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a   93 (138)
                      +...+++.|.+|+.+|+  ||+||  +|+.+||..|+++++...|.|+||||.|..++.
T Consensus         3 ~~~~~~~~C~vC~~~g~--ll~CD--~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~   57 (66)
T 1xwh_A            3 MAQKNEDECAVCRDGGE--LICCD--GCPRAFHLACLSPPLREIPSGTWRCSSCLQATV   57 (66)
T ss_dssp             CCCSCCCSBSSSSCCSS--CEECS--SCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred             cCCCCCCCCccCCCCCC--EEEcC--CCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence            34567899999999999  99999  999999999999998889999999999986543

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=5.3e-15  Score=95.55  Aligned_cols=53  Identities=28%  Similarity=0.553  Sum_probs=47.9

Q ss_pred             cCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccch
Q 037252           34 DVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWY   90 (138)
Q Consensus        34 ~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~y   90 (138)
                      +....+++.|.+|+.+|+  ||.||  +|+.+||..|+.++++..|.|+||||.|..
T Consensus         3 ~g~~~~~~~C~vC~~~g~--ll~Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            3 SGSSGHEDFCSVCRKSGQ--LLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             CCCCSSCCSCSSSCCSSC--CEECS--SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCcCCCCCCCccCCCCCe--EEEcC--CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            344567899999999999  99999  999999999999999889999999999963

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=99.50  E-value=5.9e-15  Score=96.32  Aligned_cols=51  Identities=29%  Similarity=0.658  Sum_probs=46.9

Q ss_pred             cccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           38 LEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        38 ~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      .+++.|.+|+.+|+  ||.||  +|+.+||..|++++++..|.|+||||.|..+.
T Consensus         3 ~~~~~C~vC~~~g~--ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   53 (60)
T 2puy_A            3 IHEDFCSVCRKSGQ--LLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM   53 (60)
T ss_dssp             CCCSSCTTTCCCSS--CEECS--SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred             CCCCCCcCCCCCCc--EEEcC--CCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence            46899999999999  99999  99999999999999998999999999997543

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=99.50  E-value=1.2e-14  Score=95.80  Aligned_cols=52  Identities=31%  Similarity=0.589  Sum_probs=47.7

Q ss_pred             CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      ..+++.|.+|+.+|+  ||+||  +|+.+||..|++++++..|+|+||||.|..+.
T Consensus         6 d~~~~~C~vC~~~g~--ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            6 DHHMEFCRVCKDGGE--LLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             CSSCSSCTTTCCCSS--CBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             cCCCCcCCCCCCCCC--EEEcC--CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence            456889999999999  99999  99999999999999888999999999998654

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=99.50  E-value=1.2e-14  Score=95.74  Aligned_cols=55  Identities=22%  Similarity=0.587  Sum_probs=49.0

Q ss_pred             CcCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252           33 TDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        33 ~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      ...+..+++.|.+|+.+|+  ||.||  +|+.+||..|++++++..|+|+||||.|..+
T Consensus         4 ~~~~~~~~~~C~vC~~~g~--ll~CD--~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            4 GSYETDHQDYCEVCQQGGE--IILCD--TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             SCCSSCCCSSCTTTSCCSS--EEECS--SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CcccCCCCCCCccCCCCCc--EEECC--CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            3444567899999999999  99999  9999999999999888889999999999864

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.3e-14  Score=101.30  Aligned_cols=65  Identities=29%  Similarity=0.596  Sum_probs=56.3

Q ss_pred             CCCCCCCCCcCCCcccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252           25 GSGRSGDFTDVDFLEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        25 ~s~~~~~~~~~~~~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      +|+-+...+.....+++.|.+|+.+++ +.||+||  +|+.+||..|+++++...|.|+||||.|..+
T Consensus         1 ~~~~~~~~s~~~~~~~~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~   66 (92)
T 2e6r_A            1 GSSGSSGHSSAQFIDSYICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA   66 (92)
T ss_dssp             CCCSSCCCCCCCCCCCCCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred             CCCCCCCCchhhccCCCCCccCCCcCCCCCEEEcC--CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence            455566677777888999999999884 4699999  9999999999999999899999999999643

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=99.44  E-value=3.1e-14  Score=95.87  Aligned_cols=50  Identities=20%  Similarity=0.367  Sum_probs=46.1

Q ss_pred             CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccch
Q 037252           37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWY   90 (138)
Q Consensus        37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~y   90 (138)
                      ..+...|.+|+++|+  ||+||  +|+.+||..|+.+++...|.|+||||.|.-
T Consensus         9 ~~~~~~C~vC~~~~~--ll~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~   58 (66)
T 2lri_C            9 LAPGARCGVCGDGTD--VLRCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSG   58 (66)
T ss_dssp             CCTTCCCTTTSCCTT--CEECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred             CCCCCCcCCCCCCCe--EEECC--CCCCceecccCCCccCcCCCCCEECccccC
Confidence            445678999999999  99999  999999999999999999999999999974

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=99.41  E-value=1e-13  Score=106.08  Aligned_cols=52  Identities=25%  Similarity=0.586  Sum_probs=48.1

Q ss_pred             cccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252           38 LEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE   93 (138)
Q Consensus        38 ~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a   93 (138)
                      .|++.|.+|+.+|+  ||+||  +||.+||..|+.+++...|.|+|+||.|.....
T Consensus         2 ~~~~~C~~C~~~g~--ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~   53 (184)
T 3o36_A            2 PNEDWCAVCQNGGE--LLCCE--KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK   53 (184)
T ss_dssp             CSCSSCTTTCCCSS--CEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred             CCCCccccCCCCCe--eeecC--CCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence            37899999999999  99999  999999999999999989999999999997653

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=99.41  E-value=5.6e-14  Score=98.49  Aligned_cols=66  Identities=23%  Similarity=0.416  Sum_probs=50.2

Q ss_pred             CCCCCCCCcCCCcccccccccccCCC---ccEEecCCCCCcccccccccCCCCcc----CCCCCccccccchhhh
Q 037252           26 SGRSGDFTDVDFLEEEPCIKCNRQRD---ENLLVCSQSGCPISVHENCLSCGVKF----DDVGNFYCPYCWYKCE   93 (138)
Q Consensus        26 s~~~~~~~~~~~~~~d~C~~C~~~G~---e~LL~Cd~~gCp~s~H~~Cl~~~~~~----dd~G~fyCP~C~yk~a   93 (138)
                      |+.+.+-.++...++++|.+|+.+..   ..||+||  +|+.+||..|+.+++.-    .|.|+||||.|..+..
T Consensus         2 ~~g~~~~dd~~~e~~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~   74 (88)
T 1wev_A            2 SSGSSGADDFAMEMGLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK   74 (88)
T ss_dssp             CCCCCCCCCCHHHHCCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred             CCCCCCcccccCCCCCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence            34333333333446789999998821   2399999  99999999999988773    7999999999986554

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=99.40  E-value=1.2e-13  Score=107.79  Aligned_cols=54  Identities=28%  Similarity=0.559  Sum_probs=49.1

Q ss_pred             CCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252           36 DFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE   93 (138)
Q Consensus        36 ~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a   93 (138)
                      +..+++.|.+|+.+|+  ||+||  +||.+||..|+.+++...|.|+|+||.|.-...
T Consensus         3 ~d~~~~~C~~C~~~g~--ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~   56 (207)
T 3u5n_A            3 DDPNEDWCAVCQNGGD--LLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK   56 (207)
T ss_dssp             CCSSCSSBTTTCCCEE--EEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred             CCCCCCCCCCCCCCCc--eEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence            3457899999999999  99999  999999999999999999999999999997654

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=99.39  E-value=5.7e-14  Score=92.26  Aligned_cols=55  Identities=16%  Similarity=0.496  Sum_probs=47.4

Q ss_pred             CCcccccccccccC-----CCccEEecCCCCCcccccccccCCCCcc---CCCCCccccccchhhhh
Q 037252           36 DFLEEEPCIKCNRQ-----RDENLLVCSQSGCPISVHENCLSCGVKF---DDVGNFYCPYCWYKCEL   94 (138)
Q Consensus        36 ~~~~~d~C~~C~~~-----G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~---dd~G~fyCP~C~yk~a~   94 (138)
                      +..+++.|.+|+.+     ++  ||+||  +|+.+||..|+++++..   .|.|+||||.|..+.+.
T Consensus         2 ~~~~~~~C~vC~~~~~~~~~~--ll~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~   64 (66)
T 2yt5_A            2 SSGSSGVCTICQEEYSEAPNE--MVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT   64 (66)
T ss_dssp             CCCCCCCBSSSCCCCCBTTBC--EEECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCC--EEECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence            35678999999987     66  99999  99999999999987764   38999999999877654

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=99.36  E-value=1.8e-13  Score=93.30  Aligned_cols=55  Identities=22%  Similarity=0.539  Sum_probs=45.7

Q ss_pred             CCCcccccccccccCC---CccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252           35 VDFLEEEPCIKCNRQR---DENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE   93 (138)
Q Consensus        35 ~~~~~~d~C~~C~~~G---~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a   93 (138)
                      ....+++.|.+|+.++   .+.||+||  +|+++||..|++++  ..|+|+||||.|..++.
T Consensus        11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~~~   68 (71)
T 2ku3_A           11 SLIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVP--YIPEGQWLCRHCLQSRA   68 (71)
T ss_dssp             CCCCSSCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCS--SCCSSCCCCHHHHHHHH
T ss_pred             cCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCC--cCCCCCcCCccCcCcCc
Confidence            3456689999999886   12499999  99999999999964  58999999999986553

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=99.34  E-value=3.4e-13  Score=94.80  Aligned_cols=56  Identities=21%  Similarity=0.527  Sum_probs=46.6

Q ss_pred             CCCcccccccccccCC--C-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhh
Q 037252           35 VDFLEEEPCIKCNRQR--D-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL   94 (138)
Q Consensus        35 ~~~~~~d~C~~C~~~G--~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~   94 (138)
                      ....+++.|.+|+.+|  + +.||+||  +|+.+||..|++++  ..|.|+||||.|......
T Consensus        20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~--~vP~g~W~C~~C~~~~~~   78 (88)
T 2l43_A           20 SLIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVP--YIPEGQWLCRHCLQSRAR   78 (88)
T ss_dssp             CCCCCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCS--SCCSSCCCCHHHHHHTTS
T ss_pred             CcCCCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCC--ccCCCceECccccCccch
Confidence            3356789999999987  1 2499999  99999999999965  489999999999876544

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.30  E-value=6.5e-13  Score=83.64  Aligned_cols=47  Identities=26%  Similarity=0.650  Sum_probs=42.0

Q ss_pred             cccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccch
Q 037252           42 PCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWY   90 (138)
Q Consensus        42 ~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~y   90 (138)
                      .|.+|+.+|+ +.||.||  +|+.+||..|+.+++...|.|+||||.|..
T Consensus         2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECC--CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            5899998774 3599999  999999999999988889999999999963

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=99.30  E-value=9.9e-13  Score=102.35  Aligned_cols=49  Identities=20%  Similarity=0.507  Sum_probs=46.0

Q ss_pred             cccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      ++.|.+|+.+|+  ||+||  +||.+||..|+.+++...|.|+|+||.|..+.
T Consensus         2 ~~~C~~C~~~g~--ll~Cd--~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~   50 (189)
T 2ro1_A            2 ATICRVCQKPGD--LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   50 (189)
T ss_dssp             CCCBTTTCCCSS--CCCCT--TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred             CCcCccCCCCCc--eeECC--CCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence            589999999999  99999  99999999999998888999999999998764

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=99.29  E-value=1e-12  Score=100.39  Aligned_cols=79  Identities=18%  Similarity=0.393  Sum_probs=60.2

Q ss_pred             CCCCcCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCc---c----CCCCCccccccchhhhhhHHHHHHH
Q 037252           30 GDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVK---F----DDVGNFYCPYCWYKCELMRTKELRK  102 (138)
Q Consensus        30 ~~~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~---~----dd~G~fyCP~C~yk~a~~~~~e~kk  102 (138)
                      ..++..+..++++|.+|+.+|+  ||+||  +||.+||..|+.+++.   +    .|+|+|+||.|..+.    ...+++
T Consensus        53 ~~~~~d~Dg~~d~C~vC~~GG~--LlcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p----l~~l~~  124 (142)
T 2lbm_A           53 DDISRDSDGMDEQCRWCAEGGN--LICCD--FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP----LLDLVT  124 (142)
T ss_dssp             SCCCBCTTSCBCSCSSSCCCSS--EEECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT----THHHHH
T ss_pred             CCceecCCCCCCeecccCCCCc--EEeCC--CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc----HHHHHH
Confidence            3455555778999999999999  99999  9999999999997654   1    589999999998643    234555


Q ss_pred             HHHHHHHHHHhhhc
Q 037252          103 KAKETKKQLACFID  116 (138)
Q Consensus       103 ~a~~AkK~L~~Fl~  116 (138)
                      ...+.=+.|..++.
T Consensus       125 ~c~~~~~~~~~~~~  138 (142)
T 2lbm_A          125 ACNSVFENLEQLLQ  138 (142)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            55555555666554

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=99.26  E-value=2.9e-12  Score=93.59  Aligned_cols=54  Identities=24%  Similarity=0.682  Sum_probs=47.7

Q ss_pred             cCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252           34 DVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        34 ~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      .....++++|.+|+.+|+  ||.||..+||.+||..|++  +...|.|+||||.|...
T Consensus         9 ~~~~~~~~~C~~C~~~G~--ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~   62 (107)
T 4gne_A            9 EPKQMHEDYCFQCGDGGE--LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD   62 (107)
T ss_dssp             -CCCSSCSSCTTTCCCSE--EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred             CCcCCCCCCCCcCCCCCc--EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence            445678999999999999  9999988999999999999  77789999999998744

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=8.4e-12  Score=86.12  Aligned_cols=46  Identities=26%  Similarity=0.606  Sum_probs=41.8

Q ss_pred             ccccccccc---CCCccEEecCCCCCcccccccccCCCCccCCCC-Cccccccc
Q 037252           40 EEPCIKCNR---QRDENLLVCSQSGCPISVHENCLSCGVKFDDVG-NFYCPYCW   89 (138)
Q Consensus        40 ~d~C~~C~~---~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G-~fyCP~C~   89 (138)
                      +..|.+|+.   +|+  ||+||  +|+.+||..|+++++...|+| +||||.|.
T Consensus        26 ~c~C~vC~~~~~~~~--ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~   75 (77)
T 2e6s_A           26 SCSCRVCGGKHEPNM--QLLCD--ECNVAYHIYCLNPPLDKVPEEEYWYCPSCK   75 (77)
T ss_dssp             SSSCSSSCCCCCSTT--EEECS--SSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred             CCCCcCcCCcCCCCC--EEEcC--CCCccccccccCCCccCCCCCCCcCCcCcc
Confidence            458999996   555  99999  999999999999999999999 99999996

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=99.17  E-value=1.3e-11  Score=83.54  Aligned_cols=47  Identities=28%  Similarity=0.733  Sum_probs=40.6

Q ss_pred             cccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCC-Cccccccch
Q 037252           42 PCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVG-NFYCPYCWY   90 (138)
Q Consensus        42 ~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G-~fyCP~C~y   90 (138)
                      .|.+|+..++ +.||.||  +|+.+||..|++++++..|+| +||||.|..
T Consensus        20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~   68 (70)
T 3asl_A           20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN   68 (70)
T ss_dssp             SBTTTCCCSCGGGEEECT--TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred             CCcCCCCcCCCCCEEEcC--CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence            6888895322 2499999  999999999999999999999 999999974

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=99.11  E-value=4.6e-11  Score=82.64  Aligned_cols=46  Identities=28%  Similarity=0.769  Sum_probs=41.6

Q ss_pred             cccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCC-ccccccc
Q 037252           42 PCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGN-FYCPYCW   89 (138)
Q Consensus        42 ~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~-fyCP~C~   89 (138)
                      .|.+|+..++ +.||+||  +|+.+||..|+.+++...|+|+ ||||.|.
T Consensus        28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~   75 (77)
T 3shb_A           28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR   75 (77)
T ss_dssp             SBTTTCCCSCGGGEEECT--TTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred             cCCccCCCCCCcceeEeC--CCCCccCcccCCCcccCCCCCCceECcCcc
Confidence            6888888765 4699999  9999999999999999999999 9999996

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=99.06  E-value=6.2e-11  Score=85.68  Aligned_cols=48  Identities=31%  Similarity=0.765  Sum_probs=41.5

Q ss_pred             cccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252           42 PCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        42 ~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      .|.+|+..++ ..||.||  +|+.+||..|+++++...|+|+||||.|...
T Consensus        60 ~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~  108 (114)
T 2kwj_A           60 SCILCGTSENDDQLLFCD--DCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL  108 (114)
T ss_dssp             CCTTTTCCTTTTTEEECS--SSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred             ccCcccccCCCCceEEcC--CCCccccccccCCCccCCCCCCeECccccch
Confidence            6889988432 2499999  9999999999999999999999999999643

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=99.05  E-value=8.3e-11  Score=84.65  Aligned_cols=47  Identities=26%  Similarity=0.617  Sum_probs=41.5

Q ss_pred             cccccccCCC--ccEEecCCCCCcccccccccCCCCccCCCCCccccccch
Q 037252           42 PCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWY   90 (138)
Q Consensus        42 ~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~y   90 (138)
                      .|.+|+..|.  +.||.||  +|+.+||..|+.+++...|+|+||||.|.-
T Consensus        63 ~C~vC~~~~~~~~~ll~Cd--~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~  111 (112)
T 3v43_A           63 TCSSCRDQGKNADNMLFCD--SCDRGFHMECCDPPLTRMPKGMWICQICRP  111 (112)
T ss_dssp             CBTTTCCCCCTTCCCEECT--TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred             ccccccCcCCCccceEEcC--CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence            6889987652  2499999  999999999999999999999999999963

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=99.03  E-value=2.8e-10  Score=77.26  Aligned_cols=55  Identities=25%  Similarity=0.642  Sum_probs=43.9

Q ss_pred             CcCCCccccccccccc--CCCccEEecCCCCCcc-cccccccCCCCccCCCCCccccccchhh
Q 037252           33 TDVDFLEEEPCIKCNR--QRDENLLVCSQSGCPI-SVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        33 ~~~~~~~~d~C~~C~~--~G~e~LL~Cd~~gCp~-s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      .+.+..+..+| +|++  .|.  +|.||+..||+ .||..|++  ++-.|.|.||||.|..++
T Consensus         9 ~~~d~~~~~~C-~C~~~~~g~--MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~   66 (71)
T 1wen_A            9 MPVDPNEPTYC-LCHQVSYGE--MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES   66 (71)
T ss_dssp             CCCCTTSCCCS-TTCCCSCSS--EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred             cccCCCCCCEE-ECCCCCCCC--EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence            34445567899 5999  677  99999444995 99999999  677788999999997654

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=99.03  E-value=1.3e-10  Score=82.80  Aligned_cols=50  Identities=24%  Similarity=0.539  Sum_probs=44.1

Q ss_pred             cccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccc
Q 037252           38 LEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCW   89 (138)
Q Consensus        38 ~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~   89 (138)
                      .|++.|.+|+++|+ +.||.|+  +||.+||..|++.+....+++.|+||.|.
T Consensus         5 ~~~~~C~~C~~~g~~~~ll~C~--~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            5 SSGANCAVCDSPGDLLDQFFCT--TCGQHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCCSCBTTTCCCCCTTTSEECS--SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCCcCCCCCCCCcCCeECC--CCCCCcChHHhCCccccccccCccCCcCC
Confidence            47899999999998 3459999  99999999999987666678999999985

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=99.00  E-value=2.7e-10  Score=81.04  Aligned_cols=56  Identities=23%  Similarity=0.503  Sum_probs=47.6

Q ss_pred             CCCcccc--cccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           35 VDFLEEE--PCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        35 ~~~~~~d--~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      ..|.=.+  .|.+|++.++ +.||.|+  .|+.+||..|+.++++..|+|+||||.|...+
T Consensus        47 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~  105 (111)
T 2ysm_A           47 AGWQCPECKVCQNCKQSGEDSKMLVCD--TCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI  105 (111)
T ss_dssp             TTCCCTTTCCCTTTCCCSCCTTEEECS--SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred             cCccCCcCCcccccCccCCCCCeeECC--CCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence            4455444  7999999886 4799999  99999999999999998999999999997643

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=98.99  E-value=1.5e-10  Score=77.58  Aligned_cols=57  Identities=23%  Similarity=0.388  Sum_probs=46.6

Q ss_pred             CcCCCcccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252           33 TDVDFLEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        33 ~~~~~~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      .+.+..+..+|.+|+...+ +.+|.||  +|+..||..|++.++...+.++||||.|..+
T Consensus        11 ~~~~~~~~~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~   68 (75)
T 2k16_A           11 RDEWGNQIWICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIMAAPPEEMQWFCPKCANK   68 (75)
T ss_dssp             ECSSSCEEECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred             ccccCCCCcCCCCCCCCCCCCCEEEcC--CCCcccccccCCCCccCCCCCCEEChhccCc
Confidence            3444556778999998744 2599999  9999999999998777777899999999754

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=98.97  E-value=2.1e-10  Score=93.40  Aligned_cols=49  Identities=27%  Similarity=0.670  Sum_probs=39.7

Q ss_pred             cccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCC-Cccccccch
Q 037252           40 EEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVG-NFYCPYCWY   90 (138)
Q Consensus        40 ~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G-~fyCP~C~y   90 (138)
                      +..|.+|+..++ +.||+||  +|+.+||..|+.+|+...|+| +||||.|..
T Consensus       174 ~c~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~  224 (226)
T 3ask_A          174 VCACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN  224 (226)
T ss_dssp             TTSCSSSCCCCC--CCEECS--SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred             CCCCcCCCCCCCCCCeEEcC--CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence            457999998432 2499999  999999999999999999999 999999963

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=98.97  E-value=2e-10  Score=86.57  Aligned_cols=58  Identities=21%  Similarity=0.505  Sum_probs=48.0

Q ss_pred             CCCCcCCCcccccccccccCCCccEEecCCCCCcccccccccCCCC------cc-CCCCCccccccchh
Q 037252           30 GDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGV------KF-DDVGNFYCPYCWYK   91 (138)
Q Consensus        30 ~~~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~------~~-dd~G~fyCP~C~yk   91 (138)
                      ..+.-.+..++++|.+|+.+|+  ||+||  +||.+||.+|+.+.+      .. .+++.|+|+.|.-+
T Consensus        47 ~~~~~d~Dg~~~~C~vC~dGG~--LlcCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~  111 (129)
T 3ql9_A           47 DDISRDSDGMDEQCRWCAEGGN--LICCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE  111 (129)
T ss_dssp             SCCCBCTTSCBSSCTTTCCCSE--EEECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred             cccccCCCCCCCcCeecCCCCe--eEecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence            3455556778899999999999  99999  999999999999642      12 48999999999743

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=98.92  E-value=2.7e-10  Score=74.84  Aligned_cols=51  Identities=25%  Similarity=0.708  Sum_probs=40.3

Q ss_pred             CCccccccccccc--CCCccEEecCCCCCcc-cccccccCCCCccCCCCCccccccchh
Q 037252           36 DFLEEEPCIKCNR--QRDENLLVCSQSGCPI-SVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        36 ~~~~~d~C~~C~~--~G~e~LL~Cd~~gCp~-s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      +..+..+| +|++  .|.  ++.||+..||+ .||..|++  ++-.|.|.||||.|..+
T Consensus         5 d~~e~~yC-~C~~~~~g~--mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~   58 (59)
T 3c6w_A            5 GSNEPTYC-LCHQVSYGE--MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE   58 (59)
T ss_dssp             ---CCEET-TTTEECCSE--EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred             CCCCCcEE-ECCCCCCCC--eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence            34556788 7999  677  99999444995 99999999  67778899999999754

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=98.90  E-value=2.1e-09  Score=76.35  Aligned_cols=45  Identities=16%  Similarity=0.471  Sum_probs=35.5

Q ss_pred             ccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           43 CIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        43 C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      |.++..+|.  +|.|+  +|+..||..|++++....| ..||||.|.-+.
T Consensus        33 C~~~~~~~~--mi~Cd--~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~~   77 (98)
T 2lv9_A           33 CGFTHDDGY--MICCD--KCSVWQHIDCMGIDRQHIP-DTYLCERCQPRN   77 (98)
T ss_dssp             TSCCSCSSC--EEEBT--TTCBEEETTTTTCCTTSCC-SSBCCTTTSSSC
T ss_pred             CCCccCCCc--EEEcC--CCCCcCcCcCCCCCccCCC-CCEECCCCcCCC
Confidence            444455566  99999  9999999999998765555 589999997544

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=98.88  E-value=4.7e-10  Score=73.66  Aligned_cols=50  Identities=22%  Similarity=0.616  Sum_probs=39.3

Q ss_pred             Cccccccccccc--CCCccEEecCCCCCc-ccccccccCCCCccCCCCCccccccchh
Q 037252           37 FLEEEPCIKCNR--QRDENLLVCSQSGCP-ISVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        37 ~~~~d~C~~C~~--~G~e~LL~Cd~~gCp-~s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      ..+..+| +|++  .|.  +|.||+-.|| -.||..|++  ++-.|.|.||||.|..+
T Consensus         7 ~~e~~~C-~C~~~~~g~--mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~   59 (60)
T 2vnf_A            7 PNEPTYC-LCHQVSYGE--MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE   59 (60)
T ss_dssp             --CCEET-TTTEECCSE--EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred             CCCCCEE-ECCCcCCCC--EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence            3456788 6998  666  9999944499 589999999  67778899999999754

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=98.80  E-value=1.2e-09  Score=72.43  Aligned_cols=52  Identities=31%  Similarity=0.740  Sum_probs=40.6

Q ss_pred             CCccccccccccc--CCCccEEecCCCCCc-ccccccccCCCCccCCCCCccccccchhh
Q 037252           36 DFLEEEPCIKCNR--QRDENLLVCSQSGCP-ISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        36 ~~~~~d~C~~C~~--~G~e~LL~Cd~~gCp-~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      +..+..+| +|++  .|.  ++.||+-.|| ..||.+|++  ++-.|.|.||||.|..++
T Consensus         7 d~~e~~yC-~C~~~~~g~--MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~r   61 (62)
T 2g6q_A            7 DPNEPTYC-LCNQVSYGE--MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDN   61 (62)
T ss_dssp             ---CCEET-TTTEECCSE--EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTCC
T ss_pred             CCCCCcEE-ECCCCCCCC--eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccCC
Confidence            34456788 7999  777  9999944499 799999999  566789999999997543

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.72  E-value=7e-09  Score=73.95  Aligned_cols=51  Identities=22%  Similarity=0.604  Sum_probs=41.5

Q ss_pred             Cccccccccccc--CCCccEEecCCCCCc-ccccccccCCCCccCCCCCccccccchhh
Q 037252           37 FLEEEPCIKCNR--QRDENLLVCSQSGCP-ISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        37 ~~~~d~C~~C~~--~G~e~LL~Cd~~gCp-~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      ..+..+| +|++  .|.  +|.||.-.|| -.||..|++  ++-.|.|.||||.|..++
T Consensus        33 ~~e~~yC-iC~~~~~g~--MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~   86 (91)
T 1weu_A           33 PNEPTYC-LCHQVSYGE--MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES   86 (91)
T ss_dssp             SCCCBCS-TTCCBCCSC--CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred             CCCCcEE-ECCCCCCCC--EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence            3456788 8999  677  9999944499 589999999  666788999999998654

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=98.57  E-value=3.2e-08  Score=70.43  Aligned_cols=49  Identities=29%  Similarity=0.693  Sum_probs=38.8

Q ss_pred             CCccccccccccc--CCCccEEecCCCCCc-ccccccccCCCCccCCCCCccccc-cc
Q 037252           36 DFLEEEPCIKCNR--QRDENLLVCSQSGCP-ISVHENCLSCGVKFDDVGNFYCPY-CW   89 (138)
Q Consensus        36 ~~~~~d~C~~C~~--~G~e~LL~Cd~~gCp-~s~H~~Cl~~~~~~dd~G~fyCP~-C~   89 (138)
                      +..+..+| +|+.  .|+  ++.||.-.|| -.||..|++  ++..|.|.||||. |.
T Consensus        22 ~~~~~~yC-iC~~~~~g~--MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~   74 (90)
T 2jmi_A           22 NNQEEVYC-FCRNVSYGP--MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK   74 (90)
T ss_dssp             --CCSCCS-TTTCCCSSS--EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred             CCCCCcEE-EeCCCCCCC--EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence            34456688 7996  566  9999955588 589999999  6667889999999 85

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=98.53  E-value=1.3e-08  Score=73.41  Aligned_cols=48  Identities=25%  Similarity=0.457  Sum_probs=38.7

Q ss_pred             cccccccccCC-------C-ccEEecCCCCCcccccccccCCCCc---cCCCCCccccccc
Q 037252           40 EEPCIKCNRQR-------D-ENLLVCSQSGCPISVHENCLSCGVK---FDDVGNFYCPYCW   89 (138)
Q Consensus        40 ~d~C~~C~~~G-------~-e~LL~Cd~~gCp~s~H~~Cl~~~~~---~dd~G~fyCP~C~   89 (138)
                      .++|..|..++       + +.||.|+  +||.+||.+|++.++.   ..+.+.|+||.|.
T Consensus         1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   59 (114)
T 2kwj_A            1 GSYCDFCLGGSNMNKKSGRPEELVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK   59 (114)
T ss_dssp             CCCCSSSCCBTTBCTTTCCCCCCEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred             CCcCccCCCCccccccCCCCCCCeEeC--CCCCccchhhCCChhhhhhccCCCccCccccC
Confidence            36788897654       1 3599999  9999999999997643   3578999999984

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=98.35  E-value=6.5e-08  Score=69.45  Aligned_cols=49  Identities=24%  Similarity=0.459  Sum_probs=39.1

Q ss_pred             ccccccccccC------CC-ccEEecCCCCCcccccccccCCCCc---cCCCCCccccccc
Q 037252           39 EEEPCIKCNRQ------RD-ENLLVCSQSGCPISVHENCLSCGVK---FDDVGNFYCPYCW   89 (138)
Q Consensus        39 ~~d~C~~C~~~------G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~---~dd~G~fyCP~C~   89 (138)
                      ..++|..|.++      |+ +.||.|+  +|+.+||.+||+.++.   ..+.++|+||.|.
T Consensus         4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   62 (112)
T 3v43_A            4 PIPICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECK   62 (112)
T ss_dssp             CCSSBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred             cCccccccCCchhhCcCCCchhceEhh--hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence            46789999765      22 4699999  9999999999985432   3478999999996

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.25  E-value=4e-07  Score=61.51  Aligned_cols=48  Identities=29%  Similarity=0.768  Sum_probs=38.0

Q ss_pred             cccccccccc--CCCccEEecCCCCCc-ccccccccCCCCccCCCCCccccccchh
Q 037252           39 EEEPCIKCNR--QRDENLLVCSQSGCP-ISVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        39 ~~d~C~~C~~--~G~e~LL~Cd~~gCp-~s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      +.-+|+ |+.  .|.  ++.||.-.|| .-||..|++  ++-.|.+.||||.|.-+
T Consensus         5 ~~~yC~-C~~~~~g~--MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~   55 (70)
T 1x4i_A            5 SSGYCI-CNQVSYGE--MVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAA   55 (70)
T ss_dssp             CCCCST-TSCCCCSS--EECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHH
T ss_pred             CCeEEE-cCCCCCCC--EeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCcc
Confidence            456786 886  555  9999955587 689999999  55578999999999743

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=98.05  E-value=7.7e-07  Score=66.81  Aligned_cols=53  Identities=19%  Similarity=0.449  Sum_probs=41.6

Q ss_pred             cccccccccccCCC--ccEEecCCCCCcccccccccCCCCc-cCCCCCccccccchhhh
Q 037252           38 LEEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVK-FDDVGNFYCPYCWYKCE   93 (138)
Q Consensus        38 ~~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~-~dd~G~fyCP~C~yk~a   93 (138)
                      .+..+| +|+..++  ..++.|+  .|+.-||..|++.+.. .+..+.|+||.|.-+..
T Consensus         6 ~~~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~   61 (174)
T 2ri7_A            6 DTKLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCVGILQSEAELIDEYVCPQCQSTED   61 (174)
T ss_dssp             -CCEET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHH
T ss_pred             CCCcEe-eCCCCCCCCCCEeECC--CCCchhChhhcCCchhhccCccCeecCCCcchhc
Confidence            456789 9998643  2499999  9999999999996543 35689999999987654

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=98.04  E-value=1.3e-06  Score=62.84  Aligned_cols=52  Identities=25%  Similarity=0.517  Sum_probs=42.0

Q ss_pred             CcccccccccccCCCccEEecCCCCCcccccccccCCC------------CccCCCCCccccccch
Q 037252           37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG------------VKFDDVGNFYCPYCWY   90 (138)
Q Consensus        37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~------------~~~dd~G~fyCP~C~y   90 (138)
                      ..+++.|-+|+.=..+.|++|.  .|.++||..||...            +.-...+-|.||+|-.
T Consensus        12 ~~~D~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen   75 (89)
T 1wil_A           12 VVNDEMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN   75 (89)
T ss_dssp             CCCSCCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred             CCCCcccCccccccccceeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence            4578999999943334499999  99999999999863            4445889999999953

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.02  E-value=6e-06  Score=55.06  Aligned_cols=63  Identities=22%  Similarity=0.393  Sum_probs=43.4

Q ss_pred             CCCCCCCcCCCcccccccccccCCC--ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           27 GRSGDFTDVDFLEEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        27 ~~~~~~~~~~~~~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      +.|....+.+-.+.-+|+ |+...+  +..+.|+  .|-.=||..|++....-.....||||.|.-+.
T Consensus         3 ~~~~~~e~~~~~~~~~C~-C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~   67 (72)
T 1wee_A            3 SGSSGMERGVDNWKVDCK-CGTKDDDGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIELS   67 (72)
T ss_dssp             CCSCCCSCSSCSSEECCT-TCCCSCCSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred             CccccccCCCCCcceEee-CCCccCCCCcEEECC--CCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence            333333333344456895 997632  2489999  99999999999976433346899999997543

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.00  E-value=4.1e-06  Score=56.88  Aligned_cols=57  Identities=19%  Similarity=0.465  Sum_probs=41.1

Q ss_pred             CCCcccccccccccCCC-ccEEecCCCCCcccccccccCCCCcc-----CCCCCccccccchhh
Q 037252           35 VDFLEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKF-----DDVGNFYCPYCWYKC   92 (138)
Q Consensus        35 ~~~~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~-----dd~G~fyCP~C~yk~   92 (138)
                      .+..+.-+| +|+.... ...+.|+...|+.=||..|++.+..-     .....||||.|..++
T Consensus        11 ~~~~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~   73 (78)
T 1wew_A           11 FQPEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             SSCCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred             cCCCCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence            333456788 5998621 23889998899999999999954332     234799999997654

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.93  E-value=3.7e-06  Score=54.51  Aligned_cols=54  Identities=20%  Similarity=0.492  Sum_probs=41.6

Q ss_pred             cccccccccccCCC--ccEEecCCCCCcccccccccCCCCcc-CCCCCccccccchhhh
Q 037252           38 LEEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYKCE   93 (138)
Q Consensus        38 ~~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk~a   93 (138)
                      .+..+|.+|++.-+  +..+.|+  .|..=||..|++.+..- +..+.|+||.|.-+++
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~   60 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG   60 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred             CCCCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence            45678999987532  3489999  99999999999965432 2358999999987654

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=97.75  E-value=1.2e-05  Score=57.72  Aligned_cols=58  Identities=19%  Similarity=0.465  Sum_probs=41.2

Q ss_pred             cccccccccC--CCccEEecCCCCCcccccccccCCCCcc------CCCCCccccccchhhhhhHHH
Q 037252           40 EEPCIKCNRQ--RDENLLVCSQSGCPISVHENCLSCGVKF------DDVGNFYCPYCWYKCELMRTK   98 (138)
Q Consensus        40 ~d~C~~C~~~--G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~------dd~G~fyCP~C~yk~a~~~~~   98 (138)
                      ...|.+|++.  .+...+.|+ .+|..=||..|++-+...      ++.+.|+||.|.-+.......
T Consensus         3 ~~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~~~~   68 (105)
T 2xb1_A            3 VYPCGACRSEVNDDQDAILCE-ASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSGSG   68 (105)
T ss_dssp             CCBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC---
T ss_pred             cCCCCCCCCccCCCCCEEEec-CCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCCCCC
Confidence            3579999987  112377776 499999999999954321      577999999999876654433

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=97.73  E-value=3e-05  Score=51.33  Aligned_cols=54  Identities=22%  Similarity=0.505  Sum_probs=36.9

Q ss_pred             ccccccccccCCC-ccEEecCCCCCcccccccccCCCCccC----CCCCccccccchhhh
Q 037252           39 EEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFD----DVGNFYCPYCWYKCE   93 (138)
Q Consensus        39 ~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~d----d~G~fyCP~C~yk~a   93 (138)
                      +.-.| +|+...+ ...+.|++..|..=||..|++.+..-.    ....||||.|..+++
T Consensus         9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r~   67 (68)
T 2rsd_A            9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRA   67 (68)
T ss_dssp             CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHHT
T ss_pred             CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCccc
Confidence            34567 4866422 238999955699999999999543221    224799999986653

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=97.72  E-value=2.3e-05  Score=52.43  Aligned_cols=50  Identities=18%  Similarity=0.411  Sum_probs=38.7

Q ss_pred             cccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252           38 LEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        38 ~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      .+.-+| +|+...+ +..+.|+  .|..=||..|++.+.. ...+.|+||.|.-+
T Consensus        17 ~~~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~s   67 (68)
T 3o70_A           17 QGLVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIRKS-NVPEVFVCQKCRDS   67 (68)
T ss_dssp             TTCCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCCTT-SCCSSCCCHHHHTC
T ss_pred             CCceEe-ECCCcCCCCCEEECC--CCCccccccccCcCcc-cCCCcEECCCCCCC
Confidence            345678 8988654 3499999  8999999999997654 33479999999643

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.56  E-value=2e-05  Score=52.78  Aligned_cols=50  Identities=18%  Similarity=0.539  Sum_probs=38.0

Q ss_pred             cccccccccCCC-ccEEecCCCCCcccccccccCCCCcc-----CCCCCccccccchhh
Q 037252           40 EEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKF-----DDVGNFYCPYCWYKC   92 (138)
Q Consensus        40 ~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~-----dd~G~fyCP~C~yk~   92 (138)
                      .-+| +|+.... +..+.|+  .|..=||..|++.+..-     +....|+||.|..++
T Consensus        16 ~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~   71 (76)
T 1wem_A           16 ALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS   71 (76)
T ss_dssp             CCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred             CCEE-ECCCccCCCCEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence            4678 6998744 2489999  99999999999964332     135899999997543

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.21  E-value=0.00017  Score=48.73  Aligned_cols=50  Identities=20%  Similarity=0.456  Sum_probs=37.5

Q ss_pred             cccccccccCC--CccEEecCCCCCcccccccccCCCCcc-CCCCCccccccchhh
Q 037252           40 EEPCIKCNRQR--DENLLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYKC   92 (138)
Q Consensus        40 ~d~C~~C~~~G--~e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk~   92 (138)
                      .-+| +|+...  ....+.|+  .|..=||..|++.+..- +....|+||.|.-+.
T Consensus        12 ~~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           12 PVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             ccEE-EcCCccCCCCceEEcC--CCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            4567 788753  23489999  99999999999964432 335899999998654

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=97.11  E-value=9.9e-05  Score=49.10  Aligned_cols=50  Identities=18%  Similarity=0.491  Sum_probs=38.8

Q ss_pred             ccccccccccCCC--ccEEecCCCCCcccccccccCCCCcc------CCCCCccccccc
Q 037252           39 EEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKF------DDVGNFYCPYCW   89 (138)
Q Consensus        39 ~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~------dd~G~fyCP~C~   89 (138)
                      ....|.+|++.-.  +..+.||+ +|..=||..|++-+...      ++.+.|+||.|.
T Consensus         7 ~~~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~   64 (65)
T 2vpb_A            7 PVYPCGICTNEVNDDQDAILCEA-SCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM   64 (65)
T ss_dssp             --CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred             CcCcCccCCCccCCCCCeEeccc-CccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence            4678999998632  46889995 99999999999965431      478899999995

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=96.95  E-value=0.0002  Score=45.14  Aligned_cols=47  Identities=19%  Similarity=0.562  Sum_probs=34.1

Q ss_pred             cccccccCCC--ccEEecCCCCCcccccccccCCCCccCCCCCccccccc
Q 037252           42 PCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCW   89 (138)
Q Consensus        42 ~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~   89 (138)
                      .|-+|++.-+  +..+.|++ .|..=||..|++.+..-.+.+.|+||.|.
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCC-CCCccCcccccCCCccccCCCCEECCCCC
Confidence            3566776532  34889996 79999999999965443234899999984

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=96.45  E-value=0.0019  Score=50.45  Aligned_cols=53  Identities=19%  Similarity=0.475  Sum_probs=39.2

Q ss_pred             ccccccccCCCc-----cEEecCCCCCcccccccccCCCCc----c---CCCCCccccccchhhhhh
Q 037252           41 EPCIKCNRQRDE-----NLLVCSQSGCPISVHENCLSCGVK----F---DDVGNFYCPYCWYKCELM   95 (138)
Q Consensus        41 d~C~~C~~~G~e-----~LL~Cd~~gCp~s~H~~Cl~~~~~----~---dd~G~fyCP~C~yk~a~~   95 (138)
                      ++|.+|++.-++     ..+.||  +|-.=||.+|++.+..    .   .+...|+||.|.-+....
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~   67 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAE   67 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCH
T ss_pred             CcCCCCcCccCCcccCCCeEECC--CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHH
Confidence            578888875331     389999  9999999999995431    0   123589999999876653

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=96.27  E-value=0.0026  Score=39.84  Aligned_cols=45  Identities=20%  Similarity=0.515  Sum_probs=33.6

Q ss_pred             ccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccc
Q 037252           41 EPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCW   89 (138)
Q Consensus        41 d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~   89 (138)
                      -.| +|+...+ +..+.|+  .|..=||..|++.+.. .....|+||.|.
T Consensus         5 ~~C-~C~~~~~~~~MI~Cd--~C~~W~H~~Cvgi~~~-~~~~~~~C~~C~   50 (52)
T 3o7a_A            5 VTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIRKS-NVPEVFVCQKCR   50 (52)
T ss_dssp             BCS-TTCCBCTTCCEEECT--TTCCEEETTTTTCCGG-GCCSSCCCHHHH
T ss_pred             eEE-EeCCcCCCCCEEEcC--CCCccccccccCCCcc-cCCCcEECcCCC
Confidence            344 3666433 2499999  8999999999997654 334799999995

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=96.11  E-value=0.0019  Score=45.54  Aligned_cols=38  Identities=26%  Similarity=0.575  Sum_probs=28.8

Q ss_pred             ccEEecCCCCCcccccccccCCCCcc----CCCCCccccccchh
Q 037252           52 ENLLVCSQSGCPISVHENCLSCGVKF----DDVGNFYCPYCWYK   91 (138)
Q Consensus        52 e~LL~Cd~~gCp~s~H~~Cl~~~~~~----dd~G~fyCP~C~yk   91 (138)
                      +.||.|+  .|...||..|++.....    +....|+||.|.-.
T Consensus        73 ~~m~~C~--~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~  114 (117)
T 4bbq_A           73 KKLMECC--ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE  114 (117)
T ss_dssp             GSCEEET--TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred             cceEEee--ecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence            3699999  99999999999975432    23456999999743

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=95.89  E-value=0.0027  Score=42.41  Aligned_cols=47  Identities=21%  Similarity=0.542  Sum_probs=34.4

Q ss_pred             cccccccCC--CccEEecCCCCCcccccccccCCCCcc-CCCCCccccccchh
Q 037252           42 PCIKCNRQR--DENLLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYK   91 (138)
Q Consensus        42 ~C~~C~~~G--~e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk   91 (138)
                      +| +|+...  ++..+.|+  .|..=||..|++.+..- .....|+||.|.-+
T Consensus        12 yC-iC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~   61 (75)
T 3kqi_A           12 YC-VCRLPYDVTRFMIECD--ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT   61 (75)
T ss_dssp             ET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred             EE-ECCCcCCCCCCEEEcC--CCCCCEecccccccccccCCCCEEECCCCccc
Confidence            45 687742  23599999  89999999999965332 22368999999754

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=95.55  E-value=0.0068  Score=54.48  Aligned_cols=36  Identities=22%  Similarity=0.399  Sum_probs=29.4

Q ss_pred             EEecCCCCCcccccccccCCCCcc-CCCCCccccccchh
Q 037252           54 LLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYK   91 (138)
Q Consensus        54 LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk   91 (138)
                      .+.||  .|.-=||..|++.+..- +..+.||||.|.-.
T Consensus        58 mI~CD--~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~   94 (528)
T 3pur_A           58 WIGCD--SCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH   94 (528)
T ss_dssp             EEECT--TTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred             EEECC--CCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence            57899  99999999999965443 34589999999853

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=95.29  E-value=0.0032  Score=55.38  Aligned_cols=51  Identities=20%  Similarity=0.480  Sum_probs=37.0

Q ss_pred             ccccccccccCC--CccEEecCCCCCcccccccccCCCCcc-CCCCCccccccchhh
Q 037252           39 EEEPCIKCNRQR--DENLLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYKC   92 (138)
Q Consensus        39 ~~d~C~~C~~~G--~e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk~   92 (138)
                      +.-+| .|+...  ....+.|+  .|.-=||..|++-+..- +..+.|+||.|.-+.
T Consensus        36 ~~~yC-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   89 (488)
T 3kv5_D           36 PPVYC-VCRQPYDVNRFMIECD--ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH   89 (488)
T ss_dssp             CCEET-TTTEECCTTSCEEEBT--TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred             CCeEE-eCCCcCCCCCCeEEcc--CCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence            34467 788742  13489999  89999999999965432 234789999998543

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=95.04  E-value=0.015  Score=42.09  Aligned_cols=40  Identities=18%  Similarity=0.369  Sum_probs=34.7

Q ss_pred             ccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccc
Q 037252           41 EPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYC   85 (138)
Q Consensus        41 d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyC   85 (138)
                      -.|..|++...   +.|.  .||.|||..|+...+...+...|+|
T Consensus        59 c~C~~C~k~~~---~~C~--~Cp~sfC~~c~~g~l~~~~~~~~~c   98 (107)
T 4gne_A           59 HQCDECSSAAV---SFCE--FCPHSFCKDHEKGALVPSALEGRLC   98 (107)
T ss_dssp             GBCTTTCSBCC---EECS--SSSCEECTTTCTTSCEECTTTTCEE
T ss_pred             CCCCcCCCCCC---cCcC--CCCcchhhhccCCcceecCCCCcee
Confidence            46888888775   7899  9999999999999888888888887

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=95.00  E-value=0.0012  Score=42.62  Aligned_cols=54  Identities=26%  Similarity=0.425  Sum_probs=38.6

Q ss_pred             cccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252           38 LEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE   93 (138)
Q Consensus        38 ~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a   93 (138)
                      .+.+.|++|-.+++ +-+++|.=.|.-..||..||..  =+..+|+..||.|.+...
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~--W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLST--WLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHH--HHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHH--HHHhCCCCccCCCCCeee
Confidence            35678999976654 3457765336666999999983  334567899999987654

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=94.68  E-value=0.009  Score=46.40  Aligned_cols=58  Identities=21%  Similarity=0.390  Sum_probs=45.2

Q ss_pred             CCcCCCcccccccccccCCCccEEecCCCCCcccccccccCC--CC----ccCCCCCccccccchh
Q 037252           32 FTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSC--GV----KFDDVGNFYCPYCWYK   91 (138)
Q Consensus        32 ~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~--~~----~~dd~G~fyCP~C~yk   91 (138)
                      +.-.+..-+.+|..|+.+|+  ||.||...|+.+|=.+|+..  ++    ....+..|.|=.|.-+
T Consensus        71 f~~DeDG~~~yC~wC~~Gg~--l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~  134 (159)
T 3a1b_A           71 YQYDDDGYQSYCTICCGGRE--VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK  134 (159)
T ss_dssp             TCBCTTSSBSSCTTTSCCSE--EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred             cccCCCCCcceeeEecCCCe--EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence            33344555789999999999  99999889999999999863  22    1246889999888743

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.88  E-value=0.0079  Score=40.73  Aligned_cols=55  Identities=22%  Similarity=0.450  Sum_probs=37.1

Q ss_pred             cccccccccccCCC---ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhh
Q 037252           38 LEEEPCIKCNRQRD---ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL   94 (138)
Q Consensus        38 ~~~d~C~~C~~~G~---e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~   94 (138)
                      .+++.|.+|-.+.+   .-+++|.-.|.-..||..||..=  +.-.++..||.|.+....
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~W--l~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQW--IKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHH--HHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHH--HhhCCCCCCCCCCCeeec
Confidence            34689999986543   23445653355699999999832  223456899999877654

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=93.70  E-value=0.014  Score=50.69  Aligned_cols=58  Identities=21%  Similarity=0.391  Sum_probs=45.5

Q ss_pred             CCcCCCcccccccccccCCCccEEecCCCCCcccccccccCCC--Cc----cCCCCCccccccchh
Q 037252           32 FTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG--VK----FDDVGNFYCPYCWYK   91 (138)
Q Consensus        32 ~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~--~~----~dd~G~fyCP~C~yk   91 (138)
                      +.-.+..-+.+|..|+.+|+  |++||...|+.+|=..|+..-  +.    ......|.|=.|.-+
T Consensus        85 f~~D~DG~~~yCr~C~~Gg~--l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~  148 (386)
T 2pv0_B           85 FLYDDDGYQSYCSICCSGET--LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS  148 (386)
T ss_dssp             TCBCSSSSBCSCTTTCCCSS--CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred             cccCCCCCcccceEcCCCCe--EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence            33334555789999999999  999999999999999998731  12    235689999999854

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=90.00  E-value=0.041  Score=48.15  Aligned_cols=45  Identities=22%  Similarity=0.490  Sum_probs=34.2

Q ss_pred             ccccC----CCccEEecCCCCCcccccccccCCCCcc-CCCCCccccccchhhh
Q 037252           45 KCNRQ----RDENLLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYKCE   93 (138)
Q Consensus        45 ~C~~~----G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk~a   93 (138)
                      .|+..    |.  .+.|+  .|.-=||..|++-+..- .+.+.|+||.|.-+..
T Consensus         9 iC~~~~d~~~~--MIqCD--~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~   58 (447)
T 3kv4_A            9 LCRLPYDVTRF--MIECD--MCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG   58 (447)
T ss_dssp             TTTEECCTTSC--EEECT--TTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred             eCCCcCCCCCC--eEEcC--CCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence            67763    55  99999  99999999999965433 2347899999986543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.78  E-value=0.39  Score=32.27  Aligned_cols=49  Identities=22%  Similarity=0.452  Sum_probs=35.3

Q ss_pred             ccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           39 EEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        39 ~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      ..+.|.+|..--..+ +.|.  .|...||..|+..  -+.-.+.--||.|....
T Consensus        14 ~i~~C~IC~~~i~~g-~~C~--~C~h~fH~~Ci~k--Wl~~~~~~~CP~Cr~~w   62 (74)
T 2ct0_A           14 AVKICNICHSLLIQG-QSCE--TCGIRMHLPCVAK--YFQSNAEPRCPHCNDYW   62 (74)
T ss_dssp             SSCBCSSSCCBCSSS-EECS--SSCCEECHHHHHH--HSTTCSSCCCTTTCSCC
T ss_pred             CCCcCcchhhHcccC-CccC--CCCchhhHHHHHH--HHHhcCCCCCCCCcCcC
Confidence            357899999766533 4788  9999999999983  22333446799997543

>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}

Probab=87.52  E-value=0.2  Score=34.55  Aligned_cols=31  Identities=19%  Similarity=0.633  Sum_probs=26.8

Q ss_pred             cccccccccC--CCccEEecCCCCCcccccccccC
Q 037252           40 EEPCIKCNRQ--RDENLLVCSQSGCPISVHENCLS   72 (138)
Q Consensus        40 ~d~C~~C~~~--G~e~LL~Cd~~gCp~s~H~~Cl~   72 (138)
                      .-.|..|+..  |-  -+.|+...|..+||..|.-
T Consensus        17 ~l~C~iC~~~~~GA--ciqC~~~~C~~~fHv~CA~   49 (87)
T 2lq6_A           17 KLTCYLCKQKGVGA--SIQCHKANCYTAFHVTCAQ   49 (87)
T ss_dssp             CCCBTTTTBCCSSC--EEECSCTTTCCEEEHHHHH
T ss_pred             cCCCcCCCCCCCcE--eEecCCCCCCCcCcHHHHH
Confidence            3579999864  77  9999999999999999975

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.77  E-value=0.59  Score=29.05  Aligned_cols=51  Identities=22%  Similarity=0.428  Sum_probs=34.7

Q ss_pred             CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      ..++..|.+|...-.+-++.    .|--.||..|+..-+. ...+...||.|....
T Consensus        17 ~~~~~~C~IC~~~~~~~~~~----~CgH~fC~~Ci~~~~~-~~~~~~~CP~Cr~~~   67 (73)
T 2ysl_A           17 LQEEVICPICLDILQKPVTI----DCGHNFCLKCITQIGE-TSCGFFKCPLCKTSV   67 (73)
T ss_dssp             CCCCCBCTTTCSBCSSEEEC----TTCCEEEHHHHHHHCS-SSCSCCCCSSSCCCC
T ss_pred             CccCCEeccCCcccCCeEEc----CCCChhhHHHHHHHHH-cCCCCCCCCCCCCcC
Confidence            45567899999876532222    4668899999984322 235788999997654

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=84.07  E-value=1.3  Score=28.41  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=34.5

Q ss_pred             CcccccccccccCCCccEEecCCCCCcccccccccCCC---C------ccCCCCCccccccchhh
Q 037252           37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG---V------KFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~---~------~~dd~G~fyCP~C~yk~   92 (138)
                      ......|..|++.-....|.-.  +  ..||..|+...   .      -+...|..||..|..+.
T Consensus        12 ~~~~~~C~~C~~~I~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~   72 (79)
T 1x62_A           12 AQKLPMCDKCGTGIVGVFVKLR--D--RHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARER   72 (79)
T ss_dssp             CCCCCCCSSSCCCCCSSCEECS--S--CEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHH
T ss_pred             CCCCCccccCCCCccCcEEEEC--c--ceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHH
Confidence            3456899999986543355444  2  68999888752   1      23466889999887543

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=82.91  E-value=0.9  Score=28.73  Aligned_cols=50  Identities=18%  Similarity=0.356  Sum_probs=30.8

Q ss_pred             CCcccccccccccCCC--ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           36 DFLEEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        36 ~~~~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      ...++..|.+|-..-.  +.+.. -  .|--.||..|+..-+.    ....||+|....
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~-~--~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~~   62 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQ-L--PCNHLFHDSCIVPWLE----QHDSCPVCRKSL   62 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEE-C--TTSCEEETTTTHHHHT----TTCSCTTTCCCC
T ss_pred             cCCCCCCCeeCCccccCCCCEEE-e--CCCCeecHHHHHHHHH----cCCcCcCcCCcc
Confidence            3455789999965432  11211 1  3558899999974322    235899997553

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=82.34  E-value=0.35  Score=32.99  Aligned_cols=35  Identities=20%  Similarity=0.506  Sum_probs=27.4

Q ss_pred             EEecCCCCCcccccccccCCCC-------ccCCCCCccccccch
Q 037252           54 LLVCSQSGCPISVHENCLSCGV-------KFDDVGNFYCPYCWY   90 (138)
Q Consensus        54 LL~Cd~~gCp~s~H~~Cl~~~~-------~~dd~G~fyCP~C~y   90 (138)
                      .+.||  .|--=||.+|++.+.       .+.++-.|.||.|.-
T Consensus         2 mi~c~--~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~   43 (140)
T 2ku7_A            2 MMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE   43 (140)
T ss_dssp             CCCCS--CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred             ccccc--cCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence            46799  999999999998542       223466899999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	99.4
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	99.28
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	99.15
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	99.0
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	98.95
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	98.66
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	98.49
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	98.24
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	98.22
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	97.94
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	97.76
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	95.21
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	94.08
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	85.96
d1faqa_	52	RAF-1 {Human (Homo sapiens) [TaxId: 9606]}	81.41

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7.9e-14  Score=89.79  Aligned_cols=52  Identities=31%  Similarity=0.589  Sum_probs=47.0

Q ss_pred             CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      ..++++|.+|+.+|+  ||.|+  +|+.+||..|+++++...|.++||||.|.-+.
T Consensus         6 d~~~~~C~~C~~~g~--lv~Cd--~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           6 DHHMEFCRVCKDGGE--LLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             CSSCSSCTTTCCCSS--CBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             cCCcCCCcCCCCCCe--EEEeC--CCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            456789999999999  99999  99999999999988888899999999997554

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.3e-13  Score=86.82  Aligned_cols=48  Identities=21%  Similarity=0.539  Sum_probs=43.8

Q ss_pred             cccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252           40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      ..+|.+|+++|+  ||.||  +|+.+||..|+++++...|.++|+||.|...
T Consensus         7 c~~C~~C~~~~~--ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   54 (70)
T d1fp0a1           7 ATICRVCQKPGD--LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   54 (70)
T ss_dssp             SSCCSSSCSSSC--CEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCCCCCCcCE--EEECC--CCChhhccccCCCCcCcCCCCCEECcCCcCc
Confidence            457999999999  99999  9999999999999888889999999999644

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=5e-12  Score=78.18  Aligned_cols=46  Identities=26%  Similarity=0.686  Sum_probs=41.0

Q ss_pred             cccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccc
Q 037252           42 PCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCW   89 (138)
Q Consensus        42 ~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~   89 (138)
                      .|.+|++.++ +.||.|+  +|+.+||.+|+++++...|.++||||.|.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd--~C~~~~H~~C~~p~~~~~p~~~W~C~~C~   48 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQ   48 (51)
T ss_dssp             CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred             CCcCcCCCCCCCCEEEcC--CCCCCCCCCCCCCCCCcCCCCCEECcCCc
Confidence            4788877775 5799999  99999999999998888899999999995

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=6.9e-11  Score=79.61  Aligned_cols=63  Identities=24%  Similarity=0.434  Sum_probs=45.9

Q ss_pred             CCCCCCCCcCCCcccccccccccCCC---ccEEecCCCCCcccccccccCCCCc----cCCCCCccccccch
Q 037252           26 SGRSGDFTDVDFLEEEPCIKCNRQRD---ENLLVCSQSGCPISVHENCLSCGVK----FDDVGNFYCPYCWY   90 (138)
Q Consensus        26 s~~~~~~~~~~~~~~d~C~~C~~~G~---e~LL~Cd~~gCp~s~H~~Cl~~~~~----~dd~G~fyCP~C~y   90 (138)
                      |+.|....++.......|.+|+....   ..||.|+  +|...||..|+++++.    .++.++||||.|.-
T Consensus         2 ~s~s~~~~d~~~~~~~~C~iC~~~~~~~~~~~v~Cd--~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~   71 (88)
T d1weva_           2 SSGSSGADDFAMEMGLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR   71 (88)
T ss_dssp             CCCCCCCCCCHHHHCCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred             CCCcCCCCcccCcCcCCccCCCCccCCCCCeEEEcC--CCCCccccccCCCcccccccccCCCeEECcccCc
Confidence            34444444444444567999986432   2499999  9999999999997654    46889999999963

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=5.3e-10  Score=74.42  Aligned_cols=53  Identities=32%  Similarity=0.768  Sum_probs=40.5

Q ss_pred             CCCcccccccccccCCCccEEecCCCCCcc-cccccccCCCCccCCCCCccccccch
Q 037252           35 VDFLEEEPCIKCNRQRDENLLVCSQSGCPI-SVHENCLSCGVKFDDVGNFYCPYCWY   90 (138)
Q Consensus        35 ~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~-s~H~~Cl~~~~~~dd~G~fyCP~C~y   90 (138)
                      ++..+..+| +|+...++.+|.|+...|+. .||..|++  ++..|.++||||.|.-
T Consensus        11 ~d~~e~~~C-iC~~~~~~~~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~   64 (71)
T d1wesa_          11 IDPNEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG   64 (71)
T ss_dssp             CCSSSCCCS-TTCCCCCSSEECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSS
T ss_pred             cCCCCCCEE-EeCCCCCCCEEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCcc
Confidence            444455688 69865433477777668996 59999998  7788999999999964

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=98.66  E-value=3.8e-09  Score=65.89  Aligned_cols=46  Identities=24%  Similarity=0.741  Sum_probs=38.4

Q ss_pred             ccccccccCCCccEEecCCCCCccc-ccccccCCCCccCCCCCccccccc
Q 037252           41 EPCIKCNRQRDENLLVCSQSGCPIS-VHENCLSCGVKFDDVGNFYCPYCW   89 (138)
Q Consensus        41 d~C~~C~~~G~e~LL~Cd~~gCp~s-~H~~Cl~~~~~~dd~G~fyCP~C~   89 (138)
                      -+| +|++..++.++.|+...|+.. ||.+|++  ++..|.|+||||.|.
T Consensus         3 ~yC-~C~~~~~~~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~   49 (51)
T d2pnxa1           3 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCS   49 (51)
T ss_dssp             EET-TTTEECCSEEEECSCTTCSSCEEEGGGGT--CSSCCSSCCCCHHHH
T ss_pred             cEE-EcCCCCCCCEEEEecCCCCCCCEeCCccC--CCcCCCCcEECcCCC
Confidence            468 488776667999997789875 9999999  666888999999996

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.49  E-value=6e-08  Score=62.91  Aligned_cols=48  Identities=29%  Similarity=0.659  Sum_probs=37.7

Q ss_pred             cccccccCCC--ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           42 PCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        42 ~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      .| +|+...+  +.+|.|+  .|..-||..|++.+..-.+.++|+||.|.-+.
T Consensus        18 ~C-~C~~~~~~~~~mv~Cd--~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~~   67 (72)
T d1weea_          18 DC-KCGTKDDDGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIELS   67 (72)
T ss_dssp             CC-TTCCCSCCSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred             Ee-eCCCCcCCCCeEEEeC--CCCCcCchhhcCCccccCCCCcEECcCCcCcC
Confidence            36 4665432  3589999  99999999999987666778999999997543

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=1.2e-07  Score=61.43  Aligned_cols=50  Identities=18%  Similarity=0.547  Sum_probs=36.8

Q ss_pred             ccccccccccCCCc-cEEecCCCCCcccccccccCCCCcc-----CCCCCccccccchh
Q 037252           39 EEEPCIKCNRQRDE-NLLVCSQSGCPISVHENCLSCGVKF-----DDVGNFYCPYCWYK   91 (138)
Q Consensus        39 ~~d~C~~C~~~G~e-~LL~Cd~~gCp~s~H~~Cl~~~~~~-----dd~G~fyCP~C~yk   91 (138)
                      +..+| +|++.+.. .+|.|+  .|...||..|++.+...     .+..+|+||.|...
T Consensus        15 ~~~~C-iC~~~~~~~~mi~Cd--~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~   70 (76)
T d1wema_          15 NALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             TCCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CcCEE-ECCCccCCCeEEEEC--CCCCcCCccccCCCcccccccCCCCCcEECCCCcCc
Confidence            44567 58765442 499999  99999999999854321     34578999999643

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.22  E-value=2.5e-07  Score=58.70  Aligned_cols=52  Identities=21%  Similarity=0.525  Sum_probs=40.6

Q ss_pred             ccccccccccCCC--ccEEecCCCCCcccccccccCCCCccC-CCCCccccccchhh
Q 037252           39 EEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFD-DVGNFYCPYCWYKC   92 (138)
Q Consensus        39 ~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~d-d~G~fyCP~C~yk~   92 (138)
                      ++..|.+|+...+  +.+|.|+  +|...||..|++.+.... +...|+||.|.-++
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd--~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~   59 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcC--CCCccCCcccCCcChHHCCCCCeEECcCCcCcC
Confidence            4578999987543  2478899  999999999999765543 45799999998543

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.94  E-value=2.8e-06  Score=55.82  Aligned_cols=66  Identities=20%  Similarity=0.401  Sum_probs=42.9

Q ss_pred             CCCCCCCCcCCCcccccccccccCCC-ccEEecCCCCCcccccccccCCCCcc-----CCCCCccccccchhh
Q 037252           26 SGRSGDFTDVDFLEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKF-----DDVGNFYCPYCWYKC   92 (138)
Q Consensus        26 s~~~~~~~~~~~~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~-----dd~G~fyCP~C~yk~   92 (138)
                      |+.+.+-.+++..+.-.| +|+...+ ..++.|+...|..-||..|++.+...     ...-.|+||.|..++
T Consensus         2 ss~~~~~~~~~~~~~~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~   73 (78)
T d1wewa_           2 SSGSSGEDPFQPEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             CCCCCCCCSSSCCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred             CCCccCCCccCCCCccEe-ECCCccCCCcEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcC
Confidence            444444444555556678 6988543 23777876689999999999853221     122369999997543

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=5.6e-06  Score=54.56  Aligned_cols=47  Identities=21%  Similarity=0.506  Sum_probs=35.6

Q ss_pred             ccccccccCCC--ccEEecCCCCCcccccccccCCCCcc-CCCCCccccccch
Q 037252           41 EPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWY   90 (138)
Q Consensus        41 d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~y   90 (138)
                      -+| +|++..+  +..|.|+  .|..-||..|++..... .+.+.|+||.|.-
T Consensus        13 v~C-iC~~~~~~~~~mI~Cd--~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~   62 (79)
T d1wepa_          13 VYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCEA   62 (79)
T ss_dssp             CCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT
T ss_pred             eEe-ECCCccCCCCcEEECC--CCCCcEeccccCcchhcCCCCCEEECccCcC
Confidence            456 7987533  2478899  99999999999975433 4557899999964

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=95.21  E-value=0.00058  Score=41.94  Aligned_cols=53  Identities=26%  Similarity=0.427  Sum_probs=38.2

Q ss_pred             cccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252           38 LEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC   92 (138)
Q Consensus        38 ~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~   92 (138)
                      .+...|..|-.+.. +.+..|.-.+|...||..||..  =+..+++.-||.|..+.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~--W~~~~~~~~CP~Cr~~~   57 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLST--WLTISRNTACQICGVVY   57 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHH--HHHHHTCSBCTTTCCBC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHH--HHhhCCCCCCcccCCee
Confidence            45678999987554 3456666558999999999983  23345678899997553

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.0095  Score=40.97  Aligned_cols=52  Identities=25%  Similarity=0.517  Sum_probs=40.3

Q ss_pred             CcccccccccccCCCccEEecCCCCCcccccccccCCC------------CccCCCCCccccccch
Q 037252           37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG------------VKFDDVGNFYCPYCWY   90 (138)
Q Consensus        37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~------------~~~dd~G~fyCP~C~y   90 (138)
                      ..+++.|.+|..---+.|++|-  -|-+.||..||..-            ..-.-+--|.|+||-.
T Consensus        12 v~~D~mC~vC~v~t~~~l~pCR--vCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~n   75 (89)
T d1wila_          12 VVNDEMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN   75 (89)
T ss_dssp             CCCSCCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred             CCcCccccccCcccccceecce--eecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhhcc
Confidence            5678999999765556799999  99999999998631            1223456799999964

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=85.96  E-value=0.16  Score=30.38  Aligned_cols=47  Identities=19%  Similarity=0.463  Sum_probs=32.7

Q ss_pred             ccccccccccCCC--ccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252           39 EEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK   91 (138)
Q Consensus        39 ~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk   91 (138)
                      ++..|.+|-..=+  +.++...  .|--.||..|+..-+..    +--||+|..+
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~   52 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLP--RCGHGFHAECVDMWLGS----HSTCPLCRLT   52 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECS--SSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred             CCCCCeEECccccCCCEEEEeC--CCCCcccHHHHHHHHHh----CCcCCCCCCE
Confidence            3456999965532  3466666  68899999999954432    3369999864

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.41  E-value=0.59  Score=27.45  Aligned_cols=42  Identities=24%  Similarity=0.520  Sum_probs=33.1

Q ss_pred             CCCCCcCCCcccccccccccCCCccEEecCCCCCcccccccccCC
Q 037252           29 SGDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSC   73 (138)
Q Consensus        29 ~~~~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~   73 (138)
                      ++.|...-+.....|-.|++---.+ +.|.  .|-+.+|.+|...
T Consensus         3 ~H~F~~~~f~~~~~C~~C~~~i~~g-~~C~--~C~~~~H~~C~~~   44 (52)
T d1faqa_           3 THNFARKTFLKLAFCDICQKFLLNG-FRCQ--TCGYKFHEHCSTK   44 (52)
T ss_dssp             CCCCEEECCSSCEECTTSSSEECSE-EECT--TTTCCBCSTTSSS
T ss_pred             ceEEEEeeCCCCcCCccCCCccccC-CCcC--CCCChhhhhhhcc
Confidence            4566666667778999998765433 7899  9999999999984