Citrus Sinensis ID: 037262

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MGLFRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccc
Coil and Loop (DISEMBL)
MGLFRSPTMAMFLLFLFTVSSALDMSIVSydktheskssswrtdDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIdehnsenrtyKVGLNRfadltneey
Flexible Loop (DISEMBL)
MGLFRSPTMAMFLLFLFTVSSALDMSIVSYdktheskssswrtddEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFidehnsenrtykvglnrfadltneey
Low Complexity Region (SEG)
MGLFRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY
Disordered region (IsUnstruct)
*******TMAMFLLFLFTVSSALDMSIVSYD**********RTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRF********
Disordered Region (DISOPRED)
**********MFLLFLFTVSSALDMSIVSYDK*************EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY
Disordered Region (DISEMBL)
MGLFRSPTMAMFLLFLFTVSSALDMSIVSY***********RTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY
Disordered Region (DISPRO)
**LFRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLFRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
P43297	462	Cysteine proteinase RD21a	yes	no	0.971	0.225	0.594	1e-33
A5HII1	380	Actinidain OS=Actinidia d	N/A	no	0.915	0.257	0.564	7e-26
P00785	380	Actinidain OS=Actinidia c	N/A	no	0.915	0.257	0.564	7e-26
Q9SUS9	371	Probable cysteine protein	no	no	0.990	0.285	0.469	5e-22
Q9LT77	362	Probable cysteine protein	no	no	0.616	0.182	0.641	1e-19
Q9SUT0	364	Probable cysteine protein	no	no	0.971	0.285	0.425	2e-19
P25776	458	Oryzain alpha chain OS=Or	yes	no	0.700	0.163	0.477	3e-19
Q9LXW3	376	Probable cysteine protein	no	no	0.672	0.191	0.561	3e-19
O65493	355	Xylem cysteine proteinase	no	no	0.915	0.276	0.405	7e-17
P00784	345	Papain OS=Carica papaya P	N/A	no	0.943	0.292	0.381	2e-16

>sp|P43297|RD21A_ARATH Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1

 Score =  141 bits (355), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 85/106 (80%), Gaps = 2/106 (1%)

Query: 4   FRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAY- 62
           F  PTMA+  L +  VSSA+DMSI+SYD+ H   ++  R++ EVM+++EAWLVKHGKA  
Sbjct: 3   FLKPTMAILFLAMVAVSSAVDMSIISYDEKHGVSTTGGRSEAEVMSIYEAWLVKHGKAQS 62

Query: 63  -NALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
            N+L EK++RFEIFK+NLRF+DEHN +N +Y++GL RFADLTN+EY
Sbjct: 63  QNSLVEKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEY 108

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|A5HII1|ACTN_ACTDE Actinidain OS=Actinidia deliciosa PE=1 SV=1

 Score =  115 bits (288), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/108 (56%), Positives = 84/108 (77%), Gaps = 10/108 (9%)

Query: 1   MGLFRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGK 60
           MGL +S  ++M LLF    S+ L +S+        +K+ + RT+DEV AM+E+WL+K+GK
Sbjct: 1   MGLPKS-FVSMSLLFF---STLLILSL-----AFNAKNLTQRTNDEVKAMYESWLIKYGK 51

Query: 61  AYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEY 107
           +YN+LGE E+RFEIFKE LRFIDEHN++ NR+YKVGLN+FADLT+EE+
Sbjct: 52  SYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEF 99

Cysteine protease responsible for the cleavage of kiwellin into kissper and KiTH.

Actinidia deliciosa (taxid: 3627)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 4

>sp|P00785|ACTN_ACTCH Actinidain OS=Actinidia chinensis PE=1 SV=4

 Score =  115 bits (288), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/108 (56%), Positives = 84/108 (77%), Gaps = 10/108 (9%)

Query: 1   MGLFRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGK 60
           MGL +S  ++M LLF    S+ L +S+        +K+ + RT+DEV AM+E+WL+K+GK
Sbjct: 1   MGLPKS-FVSMSLLFF---STLLILSL-----AFNAKNLTQRTNDEVKAMYESWLIKYGK 51

Query: 61  AYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEY 107
           +YN+LGE E+RFEIFKE LRFIDEHN++ NR+YKVGLN+FADLT+EE+
Sbjct: 52  SYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEF 99

Cysteine protease responsible for the cleavage of kiwellin into kissper and KiTH.

Actinidia chinensis (taxid: 3625)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 4

>sp|Q9SUS9|CPR4_ARATH Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 75/113 (66%), Gaps = 7/113 (6%)

Query: 1   MGLFRSPTMAMFLLFLF--TVSSALDMSIVSYDKTHESKSSSWRT----DDEVMAMFEAW 54
           MG  +S  M +FLL L   + ++A+DMS+VS +  H   +   R     D E   MFE+W
Sbjct: 1   MGYAKS-AMLIFLLALVIASCATAMDMSVVSSNDNHHVTAGPGRRQGIFDAEATLMFESW 59

Query: 55  LVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           +VKHGK Y+++ EKE+R  IF++NLRFI   N+EN +Y++GLNRFADL+  EY
Sbjct: 60  MVKHGKVYDSVAEKERRLTIFEDNLRFITNRNAENLSYRLGLNRFADLSLHEY 112

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9LT77|CPR1_ARATH Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 56/67 (83%), Gaps = 1/67 (1%)

Query: 42  RTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS-ENRTYKVGLNRFA 100
           R + EV  M+E WLV++ K YN LGEKE+RF+IFK+NL+F+DEHNS  +RT++VGL RFA
Sbjct: 35  RNETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRFA 94

Query: 101 DLTNEEY 107
           DLTNEE+
Sbjct: 95  DLTNEEF 101

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9SUT0|CPR3_ARATH Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 72/108 (66%), Gaps = 4/108 (3%)

Query: 1   MGLFRSPTMAMFL-LFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHG 59
           MG  +S  + + + + + + ++A+DMS+VSYD  +   S     D E   +FE+W+VKHG
Sbjct: 1   MGSAKSAMLILLVAMVIASCATAIDMSVVSYDDNNRLHSV---FDAEASLIFESWMVKHG 57

Query: 60  KAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           K Y ++ EKE+R  IF++NLRFI+  N+EN +Y++GL  FADL+  EY
Sbjct: 58  KVYGSVAEKERRLTIFEDNLRFINNRNAENLSYRLGLTGFADLSLHEY 105

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P25776|ORYA_ORYSJ Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/88 (47%), Positives = 62/88 (70%), Gaps = 13/88 (14%)

Query: 24  DMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFID 83
           DMSIVSY +         R+++E   ++  W  +HGK+YNA+GE+E+R+  F++NLR+ID
Sbjct: 22  DMSIVSYGE---------RSEEEARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYID 72

Query: 84  EHNSEN----RTYKVGLNRFADLTNEEY 107
           EHN+       ++++GLNRFADLTNEEY
Sbjct: 73  EHNAAADAGVHSFRLGLNRFADLTNEEY 100

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9LXW3|CPR2_ARATH Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 60/73 (82%), Gaps = 1/73 (1%)

Query: 36  SKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKV 94
           + + S R + EV+ M+E WLV++GK YN LGEKE+RF+IFK+NL+ I+EHNS+ NR+Y+ 
Sbjct: 26  TATESQRNEGEVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRIEEHNSDPNRSYER 85

Query: 95  GLNRFADLTNEEY 107
           GLN+F+DLT +E+
Sbjct: 86  GLNKFSDLTADEF 98

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|O65493|XCP1_ARATH Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 70/111 (63%), Gaps = 13/111 (11%)

Query: 4   FRSPTMAMFLLFLFTVSSAL-------DMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLV 56
           F +P+++ F L +   +SAL       D SIV Y   H + +      D+++ +FE+W+ 
Sbjct: 3   FSAPSLSKFSLLVAISASALLCCAFARDFSIVGYTPEHLTNT------DKLLELFESWMS 56

Query: 57  KHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           +H KAY ++ EK  RFE+F+ENL  ID+ N+E  +Y +GLN FADLT+EE+
Sbjct: 57  EHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEF 107

Probable thiol protease.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P00784|PAPA1_CARPA Papain OS=Carica papaya PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/110 (38%), Positives = 69/110 (62%), Gaps = 9/110 (8%)

Query: 1   MGLFRSPTMAMFL---LFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVK 57
           M +  S +  +F+   LF++   S  D SIV Y +   + +      + ++ +FE+W++K
Sbjct: 1   MAMIPSISKLLFVAICLFVYMGLSFGDFSIVGYSQNDLTST------ERLIQLFESWMLK 54

Query: 58  HGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           H K Y  + EK  RFEIFK+NL++IDE N +N +Y +GLN FAD++N+E+
Sbjct: 55  HNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEF 104

Carica papaya (taxid: 3649)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
374713651	467	cysteine protease [Carica papaya]	0.981	0.224	0.794	2e-44
89274062	462	cysteine proteinase [Platycodon grandifl	0.943	0.218	0.807	2e-42
16118825	179	cysteine proteinase precursor [Vasconcel	0.981	0.586	0.785	2e-42
225458701	467	PREDICTED: cysteine proteinase RD21a-lik	0.990	0.226	0.75	3e-42
62526575	467	cysteine protease CP1 [Manihot esculenta	0.990	0.226	0.759	1e-41
109390302	457	cysteine protease [Hevea brasiliensis]	0.915	0.214	0.777	4e-41
224136808	456	predicted protein [Populus trichocarpa]	0.915	0.214	0.777	1e-40
147790682	469	hypothetical protein VITISV_001146 [Viti	0.990	0.226	0.727	4e-40
118486542	465	unknown [Populus trichocarpa]	0.990	0.227	0.777	3e-39
255538210	469	cysteine protease, putative [Ricinus com	0.990	0.226	0.765	1e-37

>gi|374713651|gb|AEZ65083.1| cysteine protease [Carica papaya]

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/107 (79%), Positives = 97/107 (90%), Gaps = 2/107 (1%)

Query: 1   MGLFRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGK 60
           MGL RS ++++FLL +FT SSA+DMSIVSYD+ H  KSS WRTDDEVMAM+EAWLVKHGK
Sbjct: 1   MGLHRS-SLSLFLLMIFTASSAVDMSIVSYDQRHADKSS-WRTDDEVMAMYEAWLVKHGK 58

Query: 61  AYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           AYNALGEKEKRF IFK+NLRFIDEHNS+N TY++GLNRFADLTNEEY
Sbjct: 59  AYNALGEKEKRFGIFKDNLRFIDEHNSQNLTYRLGLNRFADLTNEEY 105

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89274062|dbj|BAE80740.1| cysteine proteinase [Platycodon grandiflorus]

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/104 (80%), Positives = 95/104 (91%), Gaps = 3/104 (2%)

Query: 6   SPTMAMFLLF-LFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNA 64
           SP+MA+ LLF LF  SSALDMSI++YD TH SKSS WRTDDEVMAM+E+WLVKHGK+YNA
Sbjct: 5   SPSMAIALLFALFVASSALDMSIINYDATHASKSS-WRTDDEVMAMYESWLVKHGKSYNA 63

Query: 65  LGEKEKRFEIFKENLRFIDEHNS-ENRTYKVGLNRFADLTNEEY 107
           LGEKEKRF+IFK+NLRFIDEHN+ EN +YKVGLNRFADLTNEEY
Sbjct: 64  LGEKEKRFQIFKDNLRFIDEHNAEENLSYKVGLNRFADLTNEEY 107

Source: Platycodon grandiflorus

Species: Platycodon grandiflorus

Genus: Platycodon

Family: Campanulaceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16118825|gb|AAL14614.1|AF417109_1 cysteine proteinase precursor [Vasconcellea cundinamarcensis]

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/107 (78%), Positives = 97/107 (90%), Gaps = 2/107 (1%)

Query: 1   MGLFRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGK 60
           MGL RS ++++ LL +FTVSSA+DMSIVSYD+ H  KSS WRTDDEVMAM+EAWLVKHGK
Sbjct: 29  MGLHRS-SLSLVLLMIFTVSSAIDMSIVSYDQKHADKSS-WRTDDEVMAMYEAWLVKHGK 86

Query: 61  AYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
            YNALGEKEKRF+IFK+NLRFIDEHNS+N TY++GLNRFADLTNEEY
Sbjct: 87  VYNALGEKEKRFDIFKDNLRFIDEHNSQNLTYRLGLNRFADLTNEEY 133

Source: Vasconcellea cundinamarcensis

Species: Vasconcellea cundinamarcensis

Genus: Vasconcellea

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458701|ref|XP_002284973.1| PREDICTED: cysteine proteinase RD21a-like [Vitis vinifera]

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/108 (75%), Positives = 96/108 (88%), Gaps = 2/108 (1%)

Query: 1   MGLFRSPT-MAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHG 59
           MGL RS + MA+FL  L  ++SALDMSI+ YD+TH  KSS WRTD++VMA++EAWL KHG
Sbjct: 1   MGLCRSSSSMAVFLFLLLGLASALDMSIIGYDETHGDKSS-WRTDEDVMAVYEAWLAKHG 59

Query: 60  KAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           K+YNALGEKE+RF+IFK+NLRFIDEHN+ENRTYKVGLNRFADLTNEEY
Sbjct: 60  KSYNALGEKERRFQIFKDNLRFIDEHNAENRTYKVGLNRFADLTNEEY 107

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62526575|gb|AAX84673.1| cysteine protease CP1 [Manihot esculenta]

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/108 (75%), Positives = 93/108 (86%), Gaps = 2/108 (1%)

Query: 1   MGLFRSPTMAMFLLFL-FTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHG 59
           MGLF S      LLFL FT+SSA DMSI+SYD+TH +KSS WRTDDEVMA++E WLVK G
Sbjct: 2   MGLFGSSAAMFVLLFLSFTLSSASDMSIISYDQTHATKSS-WRTDDEVMAIYEEWLVKQG 60

Query: 60  KAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           K YNALGE+EKRF++FK+NLRFIDEHNSENRTYK+GLN FADLTNEEY
Sbjct: 61  KVYNALGEREKRFQVFKDNLRFIDEHNSENRTYKLGLNGFADLTNEEY 108

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109390302|gb|ABG33750.1| cysteine protease [Hevea brasiliensis]

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 77/99 (77%), Positives = 90/99 (90%), Gaps = 1/99 (1%)

Query: 9   MAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEK 68
           M M L F  T+SSA D+SI+SYD++H +KSS WRTDDEVMA++E WLVKHGKAYN+LGEK
Sbjct: 1   MFMLLFFASTLSSASDLSIISYDQSHGTKSS-WRTDDEVMAIYEDWLVKHGKAYNSLGEK 59

Query: 69  EKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           E+RFE+FK+NLRFIDEHNSENRTY+VGLNRFADLTNEEY
Sbjct: 60  ERRFEVFKDNLRFIDEHNSENRTYRVGLNRFADLTNEEY 98

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136808|ref|XP_002326950.1| predicted protein [Populus trichocarpa] gi|222835265|gb|EEE73700.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 77/99 (77%), Positives = 86/99 (86%), Gaps = 1/99 (1%)

Query: 9   MAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEK 68
           M M L  +F +SSA DMSI+SY +TH +KSS WRTDDEVMAM+E WLVKHGK YNALGEK
Sbjct: 1   MLMLLFLVFALSSAFDMSIISYHQTHATKSS-WRTDDEVMAMYEEWLVKHGKNYNALGEK 59

Query: 69  EKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           EKRFEIFK+NL FID+HNSENRTY VGLNRFADLTNEE+
Sbjct: 60  EKRFEIFKDNLMFIDQHNSENRTYTVGLNRFADLTNEEF 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790682|emb|CAN61026.1| hypothetical protein VITISV_001146 [Vitis vinifera]

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/110 (72%), Positives = 95/110 (86%), Gaps = 4/110 (3%)

Query: 1   MGLFRSPT-MAMFLLFLFTVSSA--LDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVK 57
           MGL RS + MA+FL  L  ++SA   DMSI+ YD+TH  KSS WRTD++VMA++EAWL K
Sbjct: 1   MGLCRSSSSMAVFLFLLLGLASASAXDMSIIGYDETHGDKSS-WRTDEDVMAVYEAWLAK 59

Query: 58  HGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           HGK+YNALGEKE+RF+IFK+NLRFIDEHN+ENRTYKVGLNRFADLTNEEY
Sbjct: 60  HGKSYNALGEKERRFQIFKDNLRFIDEHNAENRTYKVGLNRFADLTNEEY 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486542|gb|ABK95110.1| unknown [Populus trichocarpa]

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 2/108 (1%)

Query: 1   MGLFRSPTMAMFLLFLF-TVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHG 59
           MGLFRS T+ + LLFL   +SSA DMSI+SY +TH +KSS WRTDDEVMAM+E WLVKHG
Sbjct: 1   MGLFRSSTLMLMLLFLVFALSSAFDMSIISYHQTHATKSS-WRTDDEVMAMYEEWLVKHG 59

Query: 60  KAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           K YNALGEKEKRFEIFK+NL FID+HNSENRTY VGLNRFADLTNEE+
Sbjct: 60  KNYNALGEKEKRFEIFKDNLMFIDQHNSENRTYTVGLNRFADLTNEEF 107

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538210|ref|XP_002510170.1| cysteine protease, putative [Ricinus communis] gi|223550871|gb|EEF52357.1| cysteine protease, putative [Ricinus communis]

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/111 (76%), Positives = 99/111 (89%), Gaps = 5/111 (4%)

Query: 1   MGLFRSPT-MAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHG 59
           MGLF S + M +FL F FT+SSALDMSIVSYD+TH +KSS WRTDDEVMA++E WLVK+G
Sbjct: 1   MGLFSSSSAMFVFLFFTFTLSSALDMSIVSYDQTHLTKSS-WRTDDEVMAIYEEWLVKNG 59

Query: 60  KAY---NALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           KA+   NALGEKE+RF++FK+NLRFIDEHNSENR+YKVGLNRFADLTNEEY
Sbjct: 60  KAHSNNNALGEKERRFQVFKDNLRFIDEHNSENRSYKVGLNRFADLTNEEY 110

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
TAIR|locus:2825832	462	RD21A "responsive to dehydrati	0.990	0.229	0.596	6.9e-31
TAIR|locus:2167821	463	RD21B "esponsive to dehydratio	0.990	0.228	0.558	3e-27
TAIR|locus:2128253	371	AT4G11320 [Arabidopsis thalian	0.990	0.285	0.477	1.9e-21
TAIR|locus:2117979	356	AT4G23520 [Arabidopsis thalian	0.925	0.278	0.491	8e-21
TAIR|locus:2090629	362	AT3G19400 [Arabidopsis thalian	0.616	0.182	0.641	1.6e-19
TAIR|locus:2128243	364	AT4G11310 [Arabidopsis thalian	0.971	0.285	0.425	2.2e-19
TAIR|locus:2090614	452	AT3G19390 [Arabidopsis thalian	0.878	0.207	0.471	3.7e-19
TAIR|locus:2097104	376	AT3G43960 [Arabidopsis thalian	0.794	0.226	0.5	7.8e-19
TAIR|locus:2122113	355	XCP1 "xylem cysteine peptidase	0.915	0.276	0.405	8.6e-17
TAIR|locus:2030427	356	XCP2 "xylem cysteine peptidase	0.887	0.266	0.397	5.8e-13

TAIR|locus:2825832 RD21A "responsive to dehydration 21A" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 65/109 (59%), Positives = 87/109 (79%)

Query:     1 MGLFRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGK 60
             MG F  PTMA+  L +  VSSA+DMSI+SYD+ H   ++  R++ EVM+++EAWLVKHGK
Sbjct:     1 MG-FLKPTMAILFLAMVAVSSAVDMSIISYDEKHGVSTTGGRSEAEVMSIYEAWLVKHGK 59

Query:    61 AY--NALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
             A   N+L EK++RFEIFK+NLRF+DEHN +N +Y++GL RFADLTN+EY
Sbjct:    60 AQSQNSLVEKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEY 108

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;IMP

GO:0008234 "cysteine-type peptidase activity" evidence=ISS;IDA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0008233 "peptidase activity" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0009414 "response to water deprivation" evidence=TAS

TAIR|locus:2167821 RD21B "esponsive to dehydration 21B" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 3.0e-27, P = 3.0e-27
 Identities = 62/111 (55%), Positives = 82/111 (73%)

Query:     1 MGLFRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGK 60
             MG  +   M + LL +  VS A+DMSI+SYD+ H   + + R+D EV  ++EAW+V+HGK
Sbjct:     1 MGFLKLSPMIL-LLAMIGVSYAMDMSIISYDENHHITTETSRSDSEVERIYEAWMVEHGK 59

Query:    61 A---YNALG-EKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
                  N LG EK++RFEIFK+NLRFIDEHN++N +YK+GL RFADLTNEEY
Sbjct:    60 KKMNQNGLGAEKDQRFEIFKDNLRFIDEHNTKNLSYKLGLTRFADLTNEEY 110

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2128253 AT4G11320 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 54/113 (47%), Positives = 74/113 (65%)

Query:     1 MGLFRSPTMAMFLLFLFTVS--SALDMSIVSYDKTHESKSSSWRT----DDEVMAMFEAW 54
             MG  +S  M +FLL L   S  +A+DMS+VS +  H   +   R     D E   MFE+W
Sbjct:     1 MGYAKS-AMLIFLLALVIASCATAMDMSVVSSNDNHHVTAGPGRRQGIFDAEATLMFESW 59

Query:    55 LVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
             +VKHGK Y+++ EKE+R  IF++NLRFI   N+EN +Y++GLNRFADL+  EY
Sbjct:    60 MVKHGKVYDSVAEKERRLTIFEDNLRFITNRNAENLSYRLGLNRFADLSLHEY 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

TAIR|locus:2117979 AT4G23520 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 55/112 (49%), Positives = 76/112 (67%)

Query:     1 MGLFRSPTMA-MFLLFLFTVS---SALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLV 56
             MG  R   M  +FLL +F +S   SA+D+   S    H       R+++EV  +F+ W+ 
Sbjct:     1 MGFVRPVCMTILFLLIVFVLSAPSSAMDLPATSGG--HN------RSNEEVEFIFQMWMS 52

Query:    57 KHGKAY-NALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
             KHGK Y NALGEKE+RF+ FK+NLRFID+HN++N +Y++GL RFADLT +EY
Sbjct:    53 KHGKTYTNALGEKERRFQNFKDNLRFIDQHNAKNLSYQLGLTRFADLTVQEY 104

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

TAIR|locus:2090629 AT3G19400 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 43/67 (64%), Positives = 56/67 (83%)

Query:    42 RTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS-ENRTYKVGLNRFA 100
             R + EV  M+E WLV++ K YN LGEKE+RF+IFK+NL+F+DEHNS  +RT++VGL RFA
Sbjct:    35 RNETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRFA 94

Query:   101 DLTNEEY 107
             DLTNEE+
Sbjct:    95 DLTNEEF 101

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2128243 AT4G11310 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 46/108 (42%), Positives = 72/108 (66%)

Query:     1 MGLFRSPTMAMFL-LFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHG 59
             MG  +S  + + + + + + ++A+DMS+VSYD  +   S     D E   +FE+W+VKHG
Sbjct:     1 MGSAKSAMLILLVAMVIASCATAIDMSVVSYDDNNRLHSVF---DAEASLIFESWMVKHG 57

Query:    60 KAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
             K Y ++ EKE+R  IF++NLRFI+  N+EN +Y++GL  FADL+  EY
Sbjct:    58 KVYGSVAEKERRLTIFEDNLRFINNRNAENLSYRLGLTGFADLSLHEY 105

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0005618 "cell wall" evidence=IDA

TAIR|locus:2090614 AT3G19390 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 3.7e-19, P = 3.7e-19
 Identities = 49/104 (47%), Positives = 72/104 (69%)

Query:     5 RSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNA 64
             +S T+A+ +  +  +S +L  S+ + + T        R + E   M+E WLV++ K YN 
Sbjct:     6 KSITLALLIFSVLLISLSLG-SVTATETT--------RNEAEARRMYERWLVENRKNYNG 56

Query:    65 LGEKEKRFEIFKENLRFIDEHNS-ENRTYKVGLNRFADLTNEEY 107
             LGEKE+RFEIFK+NL+F++EH+S  NRTY+VGL RFADLTN+E+
Sbjct:    57 LGEKERRFEIFKDNLKFVEEHSSIPNRTYEVGLTRFADLTNDEF 100

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2097104 AT3G43960 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 7.8e-19, P = 7.8e-19
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query:    23 LDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFI 82
             L + ++S      + + S R + EV+ M+E WLV++GK YN LGEKE+RF+IFK+NL+ I
Sbjct:    13 LSVLLISISLGVVTATESQRNEGEVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRI 72

Query:    83 DEHNSE-NRTYKVGLNRFADLTNEEY 107
             +EHNS+ NR+Y+ GLN+F+DLT +E+
Sbjct:    73 EEHNSDPNRSYERGLNKFSDLTADEF 98

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0048767 "root hair elongation" evidence=IMP

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2122113 XCP1 "xylem cysteine peptidase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 45/111 (40%), Positives = 70/111 (63%)

Query:     4 FRSPTMAMFLLFLFTVSSAL-------DMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLV 56
             F +P+++ F L +   +SAL       D SIV Y   H + +      D+++ +FE+W+ 
Sbjct:     3 FSAPSLSKFSLLVAISASALLCCAFARDFSIVGYTPEHLTNT------DKLLELFESWMS 56

Query:    57 KHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
             +H KAY ++ EK  RFE+F+ENL  ID+ N+E  +Y +GLN FADLT+EE+
Sbjct:    57 EHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEF 107

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0010623 "developmental programmed cell death" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2030427 XCP2 "xylem cysteine peptidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 5.8e-13, P = 5.8e-13
 Identities = 39/98 (39%), Positives = 61/98 (62%)

Query:    13 LLFLFTVSSA-LDMSIVS-YDKTHESKS-SSWRTDDEVMAMFEAWLVKHGKAYNALGEKE 69
             L F   +S+A L +S  S +D +    S     + D+++ +FE W+    KAY  + EK 
Sbjct:    10 LCFALALSAASLSLSFASSHDYSIVGYSPEDLESHDKLIELFENWISNFEKAYETVEEKF 69

Query:    70 KRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
              RFE+FK+NL+ IDE N + ++Y +GLN FADL++EE+
Sbjct:    70 LRFEVFKDNLKHIDETNKKGKSYWLGLNEFADLSHEEF 107

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0008233 "peptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0010623 "developmental programmed cell death" evidence=IMP

GO:0010075 "regulation of meristem growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	107
smart00848	57	smart00848, Inhibitor_I29, Cathepsin propeptide in	5e-21
pfam08246	58	pfam08246, Inhibitor_I29, Cathepsin propeptide inh	6e-19
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	5e-11
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	4e-07
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	1e-06

>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29)

 Score = 78.4 bits (194), Expect = 5e-21
 Identities = 31/57 (54%), Positives = 44/57 (77%), Gaps = 1/57 (1%)

Query: 51  FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN-RTYKVGLNRFADLTNEE 106
           FE W  KHGK+Y++  E+ +RF IFKENL+ I+EHN +   +YK+G+N+F+DLT EE
Sbjct: 1   FEQWKKKHGKSYSSEEEEARRFAIFKENLKKIEEHNKKYEHSYKLGVNQFSDLTPEE 57

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Length = 57

>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29)

 Score = 73.4 bits (181), Expect = 6e-19
 Identities = 34/58 (58%), Positives = 45/58 (77%), Gaps = 1/58 (1%)

Query: 51  FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS-ENRTYKVGLNRFADLTNEEY 107
           FE W  K+GK+Y +  E+  RF+IFKENLRFI+EHN   N +Y +GLN+FADLT+EE+
Sbjct: 1   FEDWKKKYGKSYYSEEEELYRFQIFKENLRFIEEHNKKGNVSYTLGLNQFADLTDEEF 58

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Length = 58

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score = 57.5 bits (139), Expect = 5e-11
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 51  FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS-ENRTYKVGLNRFADLTNEEY 107
           F  ++ +HGK Y    E ++R+  F ENL  I+ HN+ EN  YK G+NRF DL+ EE+
Sbjct: 169 FYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEF 226

Length = 489

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 47  VMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEE 106
             A+FE +   + +AY  L E+++R   F+ NL  + EH + N   + G+ +F DL+  E
Sbjct: 34  AAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAE 93

Query: 107 Y 107
           +
Sbjct: 94  F 94

Length = 348

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 38  SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLN 97
           S   + + EV   FE +  K+ + +    E+  RF  F+ N   +  H   +  Y   +N
Sbjct: 113 SDDPKLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG-DEPYSKEIN 171

Query: 98  RFADLTNEEY 107
           +F+DLT EE+
Sbjct: 172 KFSDLTEEEF 181

Length = 448

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
PF08246	58	Inhibitor_I29: Cathepsin propeptide inhibitor doma	99.83
PTZ00203	348	cathepsin L protease; Provisional	99.77
smart00848	57	Inhibitor_I29 Cathepsin propeptide inhibitor domai	99.75
PTZ00200	448	cysteine proteinase; Provisional	99.61
PTZ00021	489	falcipain-2; Provisional	99.6
KOG1542	372	consensus Cysteine proteinase Cathepsin F [Posttra	99.34
KOG1543	325	consensus Cysteine proteinase Cathepsin L [Posttra	98.36
PF15240	179	Pro-rich: Proline-rich	84.02

>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.83  E-value=7e-21  Score=114.06  Aligned_cols=57  Identities=56%  Similarity=0.941  Sum_probs=50.5

Q ss_pred             HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHh-cCCCCceeecccCCCCCcccC
Q 037262           51 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHN-SENRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        51 F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN-~~~~sy~lglN~FaDlT~eEf  107 (107)
                      |+.|+.+|+|.|.++.|+..|+.+|++|++.|.+|| ....+|++|+|+|||||++||
T Consensus         1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf   58 (58)
T PF08246_consen    1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF   58 (58)
T ss_dssp             HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred             CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence            789999999999999999999999999999999999 557899999999999999997

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....

>PTZ00203 cathepsin L protease; Provisional

Probab=99.77  E-value=1.2e-18  Score=136.74  Aligned_cols=63  Identities=30%  Similarity=0.598  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCceeecccCCCCCcccC
Q 037262           45 DEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        45 ~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~~~sy~lglN~FaDlT~eEf  107 (107)
                      ..+...|++|+.+|+|.|.+..|+.+|+.+|++|++.|++||+++.+|++|+|+|+|||+|||
T Consensus        32 ~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf   94 (348)
T PTZ00203         32 TPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEF   94 (348)
T ss_pred             cHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHH
Confidence            446678999999999999998899999999999999999999877799999999999999997

>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)

Probab=99.75  E-value=4e-18  Score=100.90  Aligned_cols=56  Identities=61%  Similarity=1.053  Sum_probs=52.9

Q ss_pred             HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC-CCCceeecccCCCCCccc
Q 037262           51 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEE  106 (107)
Q Consensus        51 F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~-~~sy~lglN~FaDlT~eE  106 (107)
                      |+.|+.+|+|.|.+..|...|+.+|.+|++.|..||.. ..+|++|+|+|||||++|
T Consensus         1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE   57 (57)
T smart00848        1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE   57 (57)
T ss_pred             ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence            67899999999999999999999999999999999976 479999999999999987

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s

>PTZ00200 cysteine proteinase; Provisional

Probab=99.61  E-value=1.3e-15  Score=122.99  Aligned_cols=64  Identities=30%  Similarity=0.481  Sum_probs=59.0

Q ss_pred             ChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCceeecccCCCCCcccC
Q 037262           43 TDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        43 ~~~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~~~sy~lglN~FaDlT~eEf  107 (107)
                      .+.++...|++|+.+|+|.|.+..|+.+|+.+|++|++.|++||. +.+|++|+|+|||||+|||
T Consensus       118 ~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~-~~~y~lgiN~FsDlT~eEF  181 (448)
T PTZ00200        118 LEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG-DEPYSKEINKFSDLTEEEF  181 (448)
T ss_pred             chHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC-cCCeEEeccccccCCHHHH
Confidence            356677899999999999999999999999999999999999996 4689999999999999997

>PTZ00021 falcipain-2; Provisional

Probab=99.60  E-value=1.3e-15  Score=123.97  Aligned_cols=63  Identities=41%  Similarity=0.660  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC-CCCceeecccCCCCCcccC
Q 037262           45 DEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        45 ~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~-~~sy~lglN~FaDlT~eEf  107 (107)
                      .+....|++|+.+|+|+|.+.+|+..|+.+|.+|+++|++||.+ +.+|++|+|+|+|||+|||
T Consensus       163 ~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF  226 (489)
T PTZ00021        163 LENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEF  226 (489)
T ss_pred             hHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHH
Confidence            45567899999999999999899999999999999999999976 5799999999999999997

>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1.1e-12  Score=102.64  Aligned_cols=61  Identities=30%  Similarity=0.569  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCC-CceeecccCCCCCcccC
Q 037262           47 VMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEY  107 (107)
Q Consensus        47 ~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~~~-sy~lglN~FaDlT~eEf  107 (107)
                      ....|..|+.+|+|+|.+.+|..+|+.+|++|+..+++++.... +..+|+|+|||||+|||
T Consensus        67 ~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEF  128 (372)
T KOG1542|consen   67 LEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEF  128 (372)
T ss_pred             hHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHH
Confidence            47899999999999999999999999999999999999888754 89999999999999997

>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=8.6e-07  Score=69.25  Aligned_cols=53  Identities=49%  Similarity=0.686  Sum_probs=47.8

Q ss_pred             HHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC-CCCceeecccCCCCCcccC
Q 037262           55 LVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        55 ~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~-~~sy~lglN~FaDlT~eEf  107 (107)
                      +.+|.+.|.+..|...|+.+|.+|++.|..||.. ..+|.+|+|+|+|+|.+||
T Consensus        30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~   83 (325)
T KOG1543|consen   30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEF   83 (325)
T ss_pred             hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHH
Confidence            6777788877788889999999999999999997 8999999999999999875

>PF15240 Pro-rich: Proline-rich

Probab=84.02  E-value=0.9  Score=33.10  Aligned_cols=18  Identities=22%  Similarity=0.189  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHhhcccc
Q 037262            9 MAMFLLFLFTVSSALDMS   26 (107)
Q Consensus         9 ~~~~l~~~~a~~~~~~~~   26 (107)
                      ||+|||.++.+++++|=+
T Consensus         1 MLlVLLSvALLALSSAQ~   18 (179)
T PF15240_consen    1 MLLVLLSVALLALSSAQS   18 (179)
T ss_pred             ChhHHHHHHHHHhhhccc
Confidence            567777665555544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	107
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		1e-16
1pci_A	322	Procaricain Length = 322		2e-15
3f75_P	106	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		4e-06
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		4e-04
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		6e-04

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 58/85 (68%), Gaps = 6/85 (7%)
Query: 23  LDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFI 82
           +D SIV Y +   + +      + ++ +FE+W++KH K Y  + EK  RFEIFK+NL++I
Sbjct: 44  MDFSIVGYSQNDLTST------ERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYI 97
Query: 83  DEHNSENRTYKVGLNRFADLTNEEY 107
           DE N +N +Y +GLN FAD++N+E+
Sbjct: 98  DETNKKNNSYWLGLNVFADMSNDEF 122

>pdb|1PCI|A Chain A, Procaricain Length = 322

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 6/84 (7%)
Query: 24  DMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFID 83
           D SIV Y +   + +      + ++ +F +W++ H K Y  + EK  RFEIFK+NL +ID
Sbjct: 1   DFSIVGYSQDDLTST------ERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYID 54
Query: 84  EHNSENRTYKVGLNRFADLTNEEY 107
           E N +N +Y +GLN FADL+N+E+
Sbjct: 55  ETNKKNNSYWLGLNEFADLSNDEF 78

>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 106

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 51  FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           F ++   + K+Y    EK++R+ IFK NL +I  HN +  +Y + +N F DL+ +E+
Sbjct: 25  FSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEF 81

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 56  VKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEY 107
           + H K+Y++  E+ +R  IFK+N+  I EHN++      TY   +N+F D++ EE+
Sbjct: 32  LTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEF 87

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 50  MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNE 105
           ++  W   + K YN   ++ +R  I+++N++ I EHN  +     TY +GLN+F D+T E
Sbjct: 4   LWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFE 62
Query: 106 EY 107
           E+
Sbjct: 63  EF 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	1e-39
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	3e-34
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	8e-32
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	1e-31
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	2e-31
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	9e-31
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	2e-29
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	7e-28
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	3e-26
2l95_A	80	Crammer, LP06209P; cysteine proteinase inhibitor,	3e-21
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	4e-15
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	3e-06
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	1e-04

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score =  132 bits (335), Expect = 1e-39
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 6/84 (7%)

Query: 24  DMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFID 83
           D SIV Y +          + + ++ +F +W++ H K Y  + EK  RFEIFK+NL +ID
Sbjct: 1   DFSIVGYSQDD------LTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYID 54

Query: 84  EHNSENRTYKVGLNRFADLTNEEY 107
           E N +N +Y +GLN FADL+N+E+
Sbjct: 55  ETNKKNNSYWLGLNEFADLSNDEF 78

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score =  119 bits (300), Expect = 3e-34
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 30  YDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN 89
           +   H     S      V   +E +   + ++Y    E+  R +IF++ L   +EHN + 
Sbjct: 2   HHHHH-HLEGSALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKY 60

Query: 90  R----TYKVGLNRFADLTNEEY 107
           R    +Y +G+N F D+T EE 
Sbjct: 61  RQGLVSYTLGVNLFTDMTPEEM 82

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score =  112 bits (282), Expect = 8e-32
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 43  TDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNR 98
            ++ +   +E W   H K YN   ++  R  I+++NL++I  HN E      TY++ +N 
Sbjct: 3   PEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNH 62

Query: 99  FADLTNEEY 107
             D+T+EE 
Sbjct: 63  LGDMTSEEV 71

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score =  112 bits (282), Expect = 1e-31
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 42  RTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLN 97
             D  +   +  W   +GK Y    E+  R  I+++NL+F+  HN E+     +Y +G+N
Sbjct: 3   HKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMN 62

Query: 98  RFADLTNEEY 107
              D+T+EE 
Sbjct: 63  HLGDMTSEEV 72

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 106

 Score =  105 bits (265), Expect = 2e-31
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 25  MSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDE 84
           M    +   H   S     +      F ++   + K+Y    EK++R+ IFK NL +I  
Sbjct: 1   MRGSHHHHHH--GSIWEWKEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHT 58

Query: 85  HNSENRTYKVGLNRFADLTNEEY 107
           HN +  +Y + +N F DL+ +E+
Sbjct: 59  HNQQGYSYSLKMNHFGDLSRDEF 81

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score =  110 bits (276), Expect = 9e-31
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 43  TDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNR 98
                   +  + + H K+Y++  E+ +R  IFK+N+  I EHN++      TY   +N+
Sbjct: 19  PKSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQ 78

Query: 99  FADLTNEEY 107
           F D++ EE+
Sbjct: 79  FGDMSKEEF 87

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score =  106 bits (266), Expect = 2e-29
 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 44  DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRF 99
           D  + A +  W   H + Y  + E+  R  ++++N++ I+ HN E R    ++ + +N F
Sbjct: 5   DHSLEAQWTKWKAMHNRLYG-MNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAF 63

Query: 100 ADLTNEEY 107
            D+T+EE+
Sbjct: 64  GDMTSEEF 71

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score =  101 bits (255), Expect = 7e-28
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 44  DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRF 99
           +D+   ++  W   + K YN   + + R  I+++N++ I EHN  +     TY +GLN+F
Sbjct: 1   NDD---LWHQWKRMYNKEYNGA-DDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQF 56

Query: 100 ADLTNEEY 107
            D+T EE+
Sbjct: 57  TDMTFEEF 64

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score = 97.7 bits (244), Expect = 3e-26
 Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 48  MAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           +  FE +     K+Y    ++E   + F E+++++  +          +N  +DL+ +E+
Sbjct: 5   IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG-------AINHLSDLSLDEF 57

>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Length = 80

 Score = 79.3 bits (196), Expect = 3e-21
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 51  FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNEE 106
           +  +  K  K Y A  E   R  I+ E+   I+EHN +      T+K+G+N  ADLT EE
Sbjct: 10  WVEYKSKFDKNYEAE-EDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEE 68

Query: 107 Y 107
           +
Sbjct: 69  F 69

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score = 68.3 bits (167), Expect = 4e-15
 Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 18/82 (21%)

Query: 40  SWRTDDEVMAMFEAWLVKHGKAYNALGEK-------------EKRFEIFKENLRFIDEHN 86
            W  D         W    GK      E              +    ++K +  F+   N
Sbjct: 100 GWVHDVLG----RNWACFTGKKVGTASENVYVNTAHLKNSQEKYSNRLYKYDHNFVKAIN 155

Query: 87  SENRTYKVGLN-RFADLTNEEY 107
           +  +++       +  LT  + 
Sbjct: 156 AIQKSWTATTYMEYETLTLGDM 177

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 3/41 (7%)

Query: 67  EKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
                F    +    ++  N  N T++ G N F ++     
Sbjct: 2   RSRPSFHPLSDE--LVNYVNKRNTTWQAGHN-FYNVDMSYL 39

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 81  FIDEHNSENR-TYKVGLN-RFADLTNEEY 107
           F+D  N  NR  +K   +    ++T  E 
Sbjct: 14  FVDRVNRLNRGIWKAKYDGVMQNITLREA 42

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	99.85
2l95_A	80	Crammer, LP06209P; cysteine proteinase inhibitor,	99.8
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	99.79
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	99.73
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	99.69
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	99.69
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	99.64
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	99.64
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	99.63
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	99.58
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	99.34
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	98.39
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	97.23
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	94.98

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}

Probab=99.85  E-value=2.1e-21  Score=129.01  Aligned_cols=66  Identities=30%  Similarity=0.626  Sum_probs=62.2

Q ss_pred             CChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCceeecccCCCCCcccC
Q 037262           42 RTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        42 ~~~~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~~~sy~lglN~FaDlT~eEf  107 (107)
                      .++..+...|+.|+.+|+|.|.+..|+..|+.+|++|++.|++||+++.+|++|+|+|||||++||
T Consensus        16 ~~~~~~~~~F~~wk~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~sy~lglN~FaDLT~eEF   81 (106)
T 3f75_P           16 WKEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEF   81 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHTSCCSEEECCCTTTTCCHHHH
T ss_pred             cCcHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCcccccCCHHHH
Confidence            456778999999999999999998999999999999999999999988899999999999999996

>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}

Probab=99.80  E-value=2.5e-20  Score=117.59  Aligned_cols=58  Identities=36%  Similarity=0.576  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC----CCCceeecccCCCCCcccC
Q 037262           49 AMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        49 ~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~----~~sy~lglN~FaDlT~eEf  107 (107)
                      ..|+.|+.+|+|.|.+..|+..| .+|++|++.|++||..    ..+|++|+|+|||||++||
T Consensus         8 ~~f~~~k~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlT~eEf   69 (80)
T 2l95_A            8 EEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEF   69 (80)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHTTGGGTSCCCCCCCCGGGTSSHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCeEecCcccccCCHHHH
Confidence            57999999999999988899999 9999999999999975    4789999999999999996

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=99.79  E-value=1.1e-19  Score=141.94  Aligned_cols=75  Identities=45%  Similarity=0.921  Sum_probs=65.3

Q ss_pred             cccccccccccCCCCCChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCceeecccCCCCCccc
Q 037262           27 IVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEE  106 (107)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~~~sy~lglN~FaDlT~eE  106 (107)
                      ++.+..++      +.+++.+...|++|+.+|+|.|.+.+|+.+|+.+|++|+++|++||+++.+|++|+|+|+|||.+|
T Consensus        48 ~~~y~~~d------l~s~~~~~~lf~~f~~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~sy~~g~N~FaDlT~eE  121 (363)
T 3tnx_A           48 IVGYSQND------LTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDE  121 (363)
T ss_dssp             ------CC------SSCHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTSCCSEEECSCTTTTSCHHH
T ss_pred             ccCCChhh------hcCHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEeccccccCCHHH
Confidence            34455555      667889999999999999999999999999999999999999999999899999999999999999


Q ss_pred             C
Q 037262          107 Y  107 (107)
Q Consensus       107 f  107 (107)
                      |
T Consensus       122 f  122 (363)
T 3tnx_A          122 F  122 (363)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=99.73  E-value=3e-18  Score=132.18  Aligned_cols=68  Identities=29%  Similarity=0.430  Sum_probs=62.0

Q ss_pred             CCCChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC----CCCceeecccCCCCCcccC
Q 037262           40 SWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        40 ~~~~~~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~----~~sy~lglN~FaDlT~eEf  107 (107)
                      +.+.+..+...|+.|+.+|+|.|.+..|+.+|+.+|++|+++|++||++    +.+|++|+|+|+|||.+||
T Consensus        11 ~~~~~~~l~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf   82 (331)
T 3qj3_A           11 SALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEM   82 (331)
T ss_dssp             --CCHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEECCSTTTTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeecccccccCCHHHH
Confidence            3556788999999999999999999899999999999999999999975    6899999999999999996

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=99.69  E-value=1e-17  Score=129.20  Aligned_cols=66  Identities=30%  Similarity=0.512  Sum_probs=59.9

Q ss_pred             CChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC----CCCceeecccCCCCCcccC
Q 037262           42 RTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        42 ~~~~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~----~~sy~lglN~FaDlT~eEf  107 (107)
                      .++..+...|+.|+.+|+|.|.+..|+..|+.+|++|+++|++||++    +.+|++|+|+|+|||.+||
T Consensus        18 ~~~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf   87 (329)
T 3qt4_A           18 LPKSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEF   87 (329)
T ss_dssp             --CCHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEECCCGGGGCCHHHH
T ss_pred             cCHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCeEEeccccccCCHHHH
Confidence            34567889999999999999999889999999999999999999974    5899999999999999996

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=99.69  E-value=2.3e-17  Score=126.74  Aligned_cols=67  Identities=45%  Similarity=0.907  Sum_probs=61.9

Q ss_pred             CCChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCceeecccCCCCCcccC
Q 037262           41 WRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        41 ~~~~~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~~~sy~lglN~FaDlT~eEf  107 (107)
                      +.+++.+...|+.|+.+|+|.|.+..|+..|+.+|++|+++|++||+++.+|++|+|+|+|||.+||
T Consensus        12 ~~~e~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~~g~N~FaDlt~eEf   78 (322)
T 1pci_A           12 LTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEF   78 (322)
T ss_dssp             CTHHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSCTTTTSCHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEecCccccCCHHHH
Confidence            3456778899999999999999998999999999999999999999877899999999999999986

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=99.64  E-value=8.5e-17  Score=123.22  Aligned_cols=65  Identities=32%  Similarity=0.562  Sum_probs=58.8

Q ss_pred             ChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC----CCCceeecccCCCCCcccC
Q 037262           43 TDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        43 ~~~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~----~~sy~lglN~FaDlT~eEf  107 (107)
                      .+..+...|+.|+.+|+|.|.+..|+..|+.+|++|+++|++||++    ..+|++|+|+|+|||.+||
T Consensus         4 ~~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~s~~~g~N~FaDlt~eEf   72 (315)
T 2c0y_A            4 KDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEV   72 (315)
T ss_dssp             CCGGGHHHHHHHHHHHTCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCGGGGCCHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEeccCccccCCHHHH
Confidence            3445678999999999999998889999999999999999999974    3789999999999999986

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=99.64  E-value=1e-16  Score=122.68  Aligned_cols=62  Identities=34%  Similarity=0.557  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC----CCCceeecccCCCCCcccC
Q 037262           46 EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        46 ~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~----~~sy~lglN~FaDlT~eEf  107 (107)
                      .++..|+.|+.+|+|.|.+..|+..|+.+|++|+++|++||++    ..+|++|+|+|+|||.+||
T Consensus         6 ~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~FaDlt~eEf   71 (314)
T 1by8_A            6 ILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEV   71 (314)
T ss_dssp             THHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSEEECCCTTSSSCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEEcccccccCCHHHH
Confidence            4678899999999999999899999999999999999999974    3789999999999999986

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=99.63  E-value=1.4e-16  Score=122.04  Aligned_cols=61  Identities=28%  Similarity=0.662  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC----CCCceeecccCCCCCcccC
Q 037262           46 EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        46 ~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~----~~sy~lglN~FaDlT~eEf  107 (107)
                      .+...|+.|+.+|+|.| +..|+..|+.+|++|+++|++||++    ..+|++|+|+|+|||.+||
T Consensus         7 ~~~~~f~~~~~~~~k~Y-~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf   71 (316)
T 1cs8_A            7 SLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEF   71 (316)
T ss_dssp             GGHHHHHHHHHHTTCCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhhccccCCcceEEccCccCCCCHHHH
Confidence            46789999999999999 7789999999999999999999974    5799999999999999986

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=99.58  E-value=9e-16  Score=117.27  Aligned_cols=58  Identities=36%  Similarity=0.719  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC----CCCceeecccCCCCCcccC
Q 037262           49 AMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        49 ~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~----~~sy~lglN~FaDlT~eEf  107 (107)
                      ..|+.|+.+|+|.|.+..|+.+| .+|++|+++|++||++    +.+|++|+|+|+|||.+||
T Consensus         3 ~~f~~~~~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf   64 (310)
T 2o6x_A            3 DLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEF   64 (310)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSSSEEECCCTTTTSCHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHhhhccCCCcEEEeccccCCCCHHHH
Confidence            57999999999999988899999 9999999999999975    5789999999999999986

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=99.34  E-value=7.5e-13  Score=101.34  Aligned_cols=51  Identities=24%  Similarity=0.531  Sum_probs=47.7

Q ss_pred             HHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCceeecccCCCCCcccC
Q 037262           50 MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        50 ~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~~~sy~lglN~FaDlT~eEf  107 (107)
                      .|+.|+.+|+|.|.+..|+..|+.+|++|+++|++ |.   +   |+|+|+|||.+||
T Consensus         7 ~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~-N~---~---g~N~F~Dlt~eEf   57 (312)
T 1xkg_A            7 TFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQS-NG---G---AINHLSDLSLDEF   57 (312)
T ss_dssp             SHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH-HC---C---CCCTTTTSCHHHH
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh-cc---C---CCCcccCCCHHHH
Confidence            59999999999999989999999999999999999 75   2   9999999999986

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=98.39  E-value=3.6e-08  Score=78.58  Aligned_cols=42  Identities=12%  Similarity=0.285  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCceee-cccCCCCCcccC
Q 037262           66 GEKEKRFEIFKENLRFIDEHNSENRTYKVG-LNRFADLTNEEY  107 (107)
Q Consensus        66 ~E~~~R~~~F~~N~~~I~~hN~~~~sy~lg-lN~FaDlT~eEf  107 (107)
                      .++.+|+.+|++|+++|++||++..+|+++ +|+|+|||.+||
T Consensus       135 ~~~~~R~~if~~N~~~I~~~N~~~~~~~~~~~n~faDlT~eEf  177 (441)
T 3pdf_A          135 SQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDM  177 (441)
T ss_dssp             -------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHccCCceEeecccccccCCHHHH
Confidence            455789999999999999999887899998 899999999997

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=97.23  E-value=4.6e-05  Score=58.31  Aligned_cols=38  Identities=16%  Similarity=0.112  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHhcC-CCCceeecc-cCCCCCcccC
Q 037262           70 KRFEIFKENLRFIDEHNSE-NRTYKVGLN-RFADLTNEEY  107 (107)
Q Consensus        70 ~R~~~F~~N~~~I~~hN~~-~~sy~lglN-~FaDlT~eEf  107 (107)
                      .|+.....+.++|+++|++ +.+|++|+| +|+|||.+||
T Consensus         3 ~~~~a~~~~~~~i~~~N~~~~~~~~~~~n~~f~dlt~eE~   42 (325)
T 3hhi_A            3 VAEDAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREA   42 (325)
T ss_dssp             ----------------------------------------
T ss_pred             cccccccccHHHHHHHHhCCCCceEEecccccccCCHHHH
Confidence            4567777889999999986 579999999 8999999997

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=94.98  E-value=0.0044  Score=46.97  Aligned_cols=28  Identities=21%  Similarity=0.342  Sum_probs=24.2

Q ss_pred             HHHHHHHHhcCCCCceeecccCCCCCccc
Q 037262           78 NLRFIDEHNSENRTYKVGLNRFADLTNEE  106 (107)
Q Consensus        78 N~~~I~~hN~~~~sy~lglN~FaDlT~eE  106 (107)
                      +.++|+.+|+.+.+|++|+| |+|+|.||
T Consensus        11 ~~~~i~~~N~~~~~~~~~~n-f~~~~~e~   38 (317)
T 3pbh_A           11 SDELVNYVNKRNTTWQAGHN-FYNVDMSY   38 (317)
T ss_dssp             CHHHHHHHHHHTCSEEECCC-CSSCCHHH
T ss_pred             cHHHHHHHHCCCCCeEEeec-cccCCHHH
Confidence            46789999977889999999 99988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	107
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	5e-19
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	1e-17

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (189), Expect = 5e-19
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 44  DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRF 99
           D  + A +  W   H + Y  + E+  R  ++++N++ I+ HN E      ++ + +N F
Sbjct: 5   DHSLEAQWTKWKAMHNRLYG-MNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAF 63

Query: 100 ADLTNEEY 107
            D+T+EE+
Sbjct: 64  GDMTSEEF 71

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 73.9 bits (180), Expect = 1e-17
 Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 48  MAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           +  FE +     K+Y    ++E   + F E+++++  +          +N  +DL+ +E+
Sbjct: 2   IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG-------AINHLSDLSLDEF 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	99.67
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	99.44

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-17  Score=124.42  Aligned_cols=64  Identities=28%  Similarity=0.628  Sum_probs=57.2

Q ss_pred             ChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC----CCCceeecccCCCCCcccC
Q 037262           43 TDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        43 ~~~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~----~~sy~lglN~FaDlT~eEf  107 (107)
                      -++.++.+|++|+++|+|.|.+ .|+.+|+.+|.+|++.|++||++    +.+|++|+|+|+|||.+||
T Consensus         4 ~~~~l~~~F~~f~~~~~K~Y~~-~ee~~R~~iF~~N~~~I~~~N~~~~~~~~~~~~g~N~fsDlt~eEf   71 (316)
T d1cs8a_           4 FDHSLEAQWTKWKAMHNRLYGM-NEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEF   71 (316)
T ss_dssp             CCGGGHHHHHHHHHHTTCCCCT-THHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCcCCC-HHHHHHHHHHHHHHHHHHHHHhHhhcCCCceEEeceeccccCcHHH
Confidence            3455778999999999999977 57789999999999999999974    5799999999999999996

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=99.44  E-value=3.1e-14  Score=105.90  Aligned_cols=52  Identities=21%  Similarity=0.512  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCceeecccCCCCCcccC
Q 037262           49 AMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY  107 (107)
Q Consensus        49 ~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~~~sy~lglN~FaDlT~eEf  107 (107)
                      +.|++|+.+|+|.|.+.+|+..|+.+|.+|++.|++||.       |+|+|+|||.+||
T Consensus         3 ~~f~~f~~~~~K~Y~~~~e~~~r~~if~~N~~~I~~~n~-------~~N~fsDlt~eEf   54 (302)
T d1xkga1           3 KTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG-------AINHLSDLSLDEF   54 (302)
T ss_dssp             CSHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHCC-------CCCTTTTSCHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhcc-------CCCcCCCCCHHHH
Confidence            359999999999999999999999999999999999995       7999999999996