Citrus Sinensis ID: 037271

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTDDVQVTY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccEEEEccccHHHHHHHHccccHHHHHHHHHccEEEcccccccEEEEEEEcEEEEEccccccEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEHHcHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHEHEEccccccEEEEEEEEccEEEEEcccccEEEcccccEEEEEEEEEEEHHHHcccccccccccccccEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHcccccEEEc
Coil and Loop (DISEMBL)
KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQCYlsttagpiaglLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLiplgkikrvNQSVNMKKQSEKYIEVYTvdgfdfwfmGFLNYQKAFKYLQQAISQsctddvqvty
Flexible Loop (DISEMBL)
kvdsvlkrvnklgkradnfasgvkehvrlgpkitetvkgklslgakilqvgGMEKIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKfysskgelirVHYKVliplgkikrvnqsvnmkkqsEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISqsctddvqvty
Low Complexity Region (SEG)
KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTDDVQVTY
Disordered region (IsUnstruct)
*********************GVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSC********
Disordered Region (DISOPRED)
**********KLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLG******************IEVYTVDGFDFWFMGFLNYQKAFKYLQQA*************
Disordered Region (DISEMBL)
KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTDDVQVTY
Disordered Region (DISPRO)
KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTDDVQVTY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTDDVQVTY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q9FTA0	222	GEM-like protein 4 OS=Ara	yes	no	0.940	0.779	0.668	8e-63
Q9FMW4	219	Putative GEM-like protein	no	no	0.880	0.739	0.703	8e-62
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.875	0.738	0.658	2e-58
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.875	0.766	0.645	3e-57
Q9LYV6	272	GEM-like protein 5 OS=Ara	no	no	0.940	0.636	0.398	1e-38
Q8S8F8	299	GLABRA2 expression modula	no	no	0.896	0.551	0.415	2e-36
Q9SE96	259	GEM-like protein 1 OS=Ara	no	no	0.918	0.652	0.402	1e-35
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.940	0.742	0.386	3e-35
Q9M063	239	Putative GEM-like protein	no	no	0.788	0.606	0.385	3e-29

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  239 bits (610), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 119/178 (66%), Positives = 144/178 (80%), Gaps = 5/178 (2%)

Query: 2   VDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLF 61
           V S+LKR     K+ D F +GV++  ++ PK+TETVK KLSLGA+ILQVGG+EKIFK+LF
Sbjct: 47  VKSILKR-----KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLF 101

Query: 62  AVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLI 121
            V E EKL K  QCYLSTTAGPIAGLLFIS++K+AFCSERS+K  S +G++IRVHYKV I
Sbjct: 102 RVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSI 161

Query: 122 PLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTDD 179
           PL KI RVNQS N KK S+KY+EV TVDGFDFWFMGFL+YQKAF  L++A+S S  D+
Sbjct: 162 PLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALSLSFEDN 219

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  236 bits (601), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 114/162 (70%), Positives = 137/162 (84%)

Query: 14  KRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKAC 73
           K+ D+F +GV++  +LGPK+TETVK KLSLGA+ILQ+GG+EKI+K+LF V +EEKL KA 
Sbjct: 55  KKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAY 114

Query: 74  QCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSV 133
           QCYLSTTAGPIAGLLFIS++K+AFCSERS+K  S +GEL RVHYKV IPL KI  VNQS 
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQ 174

Query: 134 NMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQS 175
           N  K S+KY+EV TVDGFDFWFMGFL+YQKAF  L+QA+S S
Sbjct: 175 NTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQALSLS 216

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/161 (65%), Positives = 134/161 (83%)

Query: 14  KRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKAC 73
           K+ D+F +G ++  +LGPK+TETVK KLSLGAKILQ+GG+EKI+K+LF V ++EKL KA 
Sbjct: 55  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAY 114

Query: 74  QCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSV 133
           QCYLSTTAGPIAGLLFIS++K+AFCSERS+K  S +G L RVHYKV IPL KI  VNQS 
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQ 174

Query: 134 NMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQ 174
           N KK S+KY+E+ T+D FDFWFMGF++YQKAF  L++A++ 
Sbjct: 175 NTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKALNN 215

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  220 bits (561), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/161 (64%), Positives = 134/161 (83%)

Query: 14  KRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKAC 73
           K+ D+F +G ++  +LGPK+TETVK KLSLGAKILQ+GG+EKI+K+LF V ++EKL KA 
Sbjct: 47  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAY 106

Query: 74  QCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSV 133
           QCYLSTT G IAGLLFIS++K+AFCSERS+K  S +G+L RVHYKV IPL KI  VNQS 
Sbjct: 107 QCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQ 166

Query: 134 NMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQ 174
           N KK S++Y+EV TVD +DFWFMGF++YQKAF  L++A+++
Sbjct: 167 NTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKALNE 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  159 bits (401), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 110/173 (63%)

Query: 1   KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQL 60
            ++ V+   +   ++A+  A  +  +++ GP ++ET  GK++L AK +  GG E +F+Q+
Sbjct: 89  PLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQI 148

Query: 61  FAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVL 120
           F  +  E L K   CYLSTT GP+AG +++S  +VAFCS+R L F +  G+    +Y+V+
Sbjct: 149 FGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVV 208

Query: 121 IPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAIS 173
           +PL  +  VN  V  +   EKYI++ TVDG DFWFMGF+NY+KA  +L  ++S
Sbjct: 209 VPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVS 261

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 105/166 (63%), Gaps = 1/166 (0%)

Query: 7   KRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEE 66
           KRV +  K+ ++ A    +H+R  P   +   G+++   K+   GG EKIF+Q F    E
Sbjct: 127 KRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPE 186

Query: 67  EKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKI 126
           E+LL +  CYLST+AGP+ G+L+IS+ K+A+CS+  L  Y +  +    +YKV+IPL ++
Sbjct: 187 EQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLS-YKNGDQTEWSYYKVVIPLHQL 245

Query: 127 KRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAI 172
           K VN S ++   +EKYI+V +VD  +FWFMGFLNY  A   LQ ++
Sbjct: 246 KAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 113/179 (63%), Gaps = 10/179 (5%)

Query: 2   VDSVLKRVNKLGK-------RADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGME 54
           +DSV   + K GK       +A++ A    +H++ GP + +    +++ G KIL  GG E
Sbjct: 78  MDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYE 137

Query: 55  KIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGE-LI 113
           K+FKQ F    +EKLLK   CYLST+AGP+ G++++ST K+AF S+  L +   +GE  +
Sbjct: 138 KVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY--KEGEQTL 195

Query: 114 RVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAI 172
             +YKV++P  ++K VN S +    S+KYI+V ++D  +FWFMGF+ Y+ A K LQ+A+
Sbjct: 196 WSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAV 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  147 bits (372), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 116/181 (64%), Gaps = 8/181 (4%)

Query: 3   DSVLKRVNKLGKR-------ADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEK 55
           D VL+ +N+ GK+       A+    G+K+H++  P I++    +LS G K++  GG E+
Sbjct: 47  DKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPER 106

Query: 56  IFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSK-GELIR 114
           +F++ F V   EKLL +  CY+STT+GP+ G+++IS  ++AFCS+ +++  SS  G  + 
Sbjct: 107 VFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVA 166

Query: 115 VHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQ 174
            +YKV++   KI  ++ S N+ K SE+Y+ + T DGF+FWFMGF++Y  AF  L +A+  
Sbjct: 167 AYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKALLN 226

Query: 175 S 175
           S
Sbjct: 227 S 227

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 96/166 (57%), Gaps = 21/166 (12%)

Query: 7   KRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEE 66
           +RV +   +A++ A    +H            G+++   K+L  GG EKIF+Q F    E
Sbjct: 86  RRVGEAAMKAESLAGNTWQHP------LRAAMGRIAQSTKVLAEGGYEKIFRQTFETVPE 139

Query: 67  EKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKI 126
           E+L  +  CYLST+AGP+ G+L++ST K+A+CS+ SL               V+IPL ++
Sbjct: 140 EQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL---------------VVIPLHQL 184

Query: 127 KRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAI 172
           K VN S++    +EKYI+V +VD  +FWFMGFLNY+ A   LQ  +
Sbjct: 185 KSVNPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTL 230

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
225463675	218	PREDICTED: GEM-like protein 4 [Vitis vin	0.940	0.793	0.763	6e-74
255544121	237	conserved hypothetical protein [Ricinus	0.951	0.738	0.742	3e-73
356519417	224	PREDICTED: GEM-like protein 4-like [Glyc	0.951	0.781	0.732	8e-73
224148499	224	predicted protein [Populus trichocarpa]	0.967	0.794	0.713	9e-73
224093965	234	predicted protein [Populus trichocarpa]	0.994	0.782	0.693	2e-72
449464298	230	PREDICTED: GEM-like protein 4-like [Cucu	0.945	0.756	0.747	4e-72
224083864	221	predicted protein [Populus trichocarpa]	0.961	0.800	0.734	5e-72
356575247	222	PREDICTED: GEM-like protein 4-like [Glyc	0.945	0.783	0.741	1e-71
224106033	221	predicted protein [Populus trichocarpa]	0.961	0.800	0.723	4e-71
255544123	220	conserved hypothetical protein [Ricinus	0.967	0.809	0.719	8e-71

>gi|225463675|ref|XP_002275935.1| PREDICTED: GEM-like protein 4 [Vitis vinifera] gi|297742758|emb|CBI35392.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (720), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 132/173 (76%), Positives = 154/173 (89%)

Query: 3   DSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFA 62
           DSV  R+NKLGK+AD+F +GV+EHVRL P I+ETVKGKLSLGA+ILQVGG+EKIFK+LF 
Sbjct: 46  DSVTDRMNKLGKKADSFVNGVREHVRLAPNISETVKGKLSLGARILQVGGVEKIFKRLFR 105

Query: 63  VKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIP 122
           V+E EKLLKA QCYLSTTAGPIAGLLFIST+K+AFCSER++KF S+ GEL+R+HYKVLIP
Sbjct: 106 VREGEKLLKASQCYLSTTAGPIAGLLFISTDKIAFCSERAIKFSSANGELVRIHYKVLIP 165

Query: 123 LGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQS 175
           L KIK  NQS N KK S+KYIE+ T D F+FWFMGFLNYQKAFKYLQQA+SQ+
Sbjct: 166 LRKIKIANQSENTKKPSQKYIEIVTTDNFEFWFMGFLNYQKAFKYLQQALSQA 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544121|ref|XP_002513123.1| conserved hypothetical protein [Ricinus communis] gi|223548134|gb|EEF49626.1| conserved hypothetical protein [Ricinus communis]

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 158/175 (90%)

Query: 1   KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQL 60
           K+DSVLKR+NKLGK+AD FA G++EHV+LG KITET+KGKLSLGA+ILQVGG++KI++QL
Sbjct: 51  KIDSVLKRMNKLGKKADKFAHGIREHVKLGTKITETLKGKLSLGARILQVGGVKKIYRQL 110

Query: 61  FAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVL 120
           F VKE E+LLKACQCYLSTTAGPIAGLLFIS++K+AFCSERS+K  S +G+++R+HYKV+
Sbjct: 111 FNVKEGERLLKACQCYLSTTAGPIAGLLFISSDKLAFCSERSIKLSSPEGKMVRIHYKVV 170

Query: 121 IPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQS 175
           IPL KIK  NQS N+KK S+K+IE+ TVD FDFWFMGFLNYQKAF+ LQQA SQS
Sbjct: 171 IPLKKIKIANQSENVKKPSQKFIEIVTVDDFDFWFMGFLNYQKAFRCLQQATSQS 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519417|ref|XP_003528369.1| PREDICTED: GEM-like protein 4-like [Glycine max]

 Score =  278 bits (710), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 161/176 (91%), Gaps = 1/176 (0%)

Query: 1   KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQL 60
           +V+SVL  +N+LG++ +N A+G+KEHV+LGPKIT+TVKGKLSLGA+ILQVGG+EK+F QL
Sbjct: 47  RVNSVLTGMNRLGRKTNNLATGLKEHVKLGPKITDTVKGKLSLGARILQVGGVEKVFMQL 106

Query: 61  FAVKEE-EKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKV 119
           F+VK+  EKLLKACQCY+STT+GP+AGLLFIST+KVAFCS+RS+K YSSKG LIR+HYKV
Sbjct: 107 FSVKDGGEKLLKACQCYISTTSGPLAGLLFISTDKVAFCSDRSIKAYSSKGHLIRIHYKV 166

Query: 120 LIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQS 175
           +IPL KI+ +NQS ++KK S+KYIE+ TVD FDFWFMGFLNYQKAFKYL+QAISQ+
Sbjct: 167 VIPLEKIRSINQSQHVKKPSQKYIEIVTVDNFDFWFMGFLNYQKAFKYLKQAISQA 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224148499|ref|XP_002336664.1| predicted protein [Populus trichocarpa] gi|222836479|gb|EEE74886.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (710), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 127/178 (71%), Positives = 157/178 (88%)

Query: 1   KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQL 60
           K+DS+LKR+NKLGK+AD FA G++EH+RLG KITET+ GKLSLGA+ILQVGG++K+F+QL
Sbjct: 39  KIDSMLKRMNKLGKKADKFAHGIREHMRLGTKITETLVGKLSLGARILQVGGVKKVFRQL 98

Query: 61  FAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVL 120
           F+V E E+LL+ CQCYLSTTAGPIAGLLFISTEK+AFCSERS+K  S +G+L+R+HYKV+
Sbjct: 99  FSVSEGERLLRVCQCYLSTTAGPIAGLLFISTEKLAFCSERSIKLSSPEGKLVRIHYKVV 158

Query: 121 IPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTD 178
           +PL KI+  NQS N KK SEKYIE+ TVD FDFWFMGF +YQKAFK LQQAI+Q+ T+
Sbjct: 159 VPLRKIRTANQSENAKKPSEKYIEIVTVDDFDFWFMGFFSYQKAFKSLQQAITQTQTN 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093965|ref|XP_002310054.1| predicted protein [Populus trichocarpa] gi|118489337|gb|ABK96473.1| unknown [Populus trichocarpa x Populus deltoides] gi|222852957|gb|EEE90504.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/183 (69%), Positives = 157/183 (85%)

Query: 1   KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQL 60
           K+DS+LKR+NKLGK+AD FA G++EH+RLG KITET+ GKLSLGA+ILQVGG++K+F+QL
Sbjct: 50  KIDSMLKRMNKLGKKADKFAHGIREHMRLGTKITETLVGKLSLGARILQVGGVKKVFRQL 109

Query: 61  FAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVL 120
           F+V E E+LL+ CQCYLSTTAGPIAGLLFISTEK+AFCSERS+K  S +G+L+R+HYKV+
Sbjct: 110 FSVSEGERLLRVCQCYLSTTAGPIAGLLFISTEKLAFCSERSIKLSSPEGKLVRIHYKVV 169

Query: 121 IPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTDDV 180
           +PL KIK  NQS N KK SEKYIE+ TVD FDFWFMGF +YQKAFK LQQA++Q+  +  
Sbjct: 170 VPLRKIKTANQSENAKKPSEKYIEIVTVDDFDFWFMGFFSYQKAFKSLQQAVTQAQMNTS 229

Query: 181 QVT 183
             T
Sbjct: 230 HST 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464298|ref|XP_004149866.1| PREDICTED: GEM-like protein 4-like [Cucumis sativus]

 Score =  275 bits (704), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 130/174 (74%), Positives = 149/174 (85%)

Query: 3   DSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFA 62
           DS+L RVNKLGKRAD+FA GV+EHVRLG KI+ETVKGKLSLGA+ILQVGG+ KIFKQLF 
Sbjct: 54  DSMLSRVNKLGKRADSFAHGVREHVRLGSKISETVKGKLSLGARILQVGGLRKIFKQLFN 113

Query: 63  VKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIP 122
           V + EKLLKA  CYLSTTAGPIAGLLFIST K+AFCS+RS+K  S  GELIR HYKV+IP
Sbjct: 114 VGDGEKLLKAVHCYLSTTAGPIAGLLFISTNKIAFCSDRSIKVSSPSGELIRFHYKVVIP 173

Query: 123 LGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSC 176
           +GKI+R+NQS N+KK S+KY+E+ TVD FDFWFMGFLNY K  +YLQ  ISQ C
Sbjct: 174 VGKIERINQSENVKKPSQKYMEIVTVDNFDFWFMGFLNYHKTLQYLQDVISQKC 227

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083864|ref|XP_002307149.1| predicted protein [Populus trichocarpa] gi|222856598|gb|EEE94145.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (704), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 156/181 (86%), Gaps = 4/181 (2%)

Query: 1   KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQL 60
           K DS+LK +NKLGK+ADNFA+GV+EHVRLGPKI+ETVKGKLSLGAKILQVGG+EKIFKQL
Sbjct: 45  KADSMLKMMNKLGKKADNFANGVREHVRLGPKISETVKGKLSLGAKILQVGGVEKIFKQL 104

Query: 61  FAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVL 120
           F V E+EKLLKA QCYLSTTAGPIAGLLFISTEKVAFCSERS+KF S  G+ +RVHYKVL
Sbjct: 105 FVVSEDEKLLKASQCYLSTTAGPIAGLLFISTEKVAFCSERSIKFSSPSGKSVRVHYKVL 164

Query: 121 IPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTDDV 180
           +PL KIK +NQS N+KK S+KY+E+ TVD F+FWFMGF+NYQK F       S+ CT ++
Sbjct: 165 VPLKKIKMLNQSENVKKPSQKYLELVTVDDFEFWFMGFINYQKTFNIF----SRQCTSNL 220

Query: 181 Q 181
           +
Sbjct: 221 R 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575247|ref|XP_003555753.1| PREDICTED: GEM-like protein 4-like [Glycine max]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/174 (74%), Positives = 157/174 (90%)

Query: 2   VDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLF 61
           V+SVL R+NKLG++ + FA+G+KEHV+LG KIT+TVKGKLSLGA+ILQVGG++K+F QLF
Sbjct: 49  VNSVLTRMNKLGRKTNIFATGLKEHVKLGQKITDTVKGKLSLGARILQVGGVKKVFMQLF 108

Query: 62  AVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLI 121
           +VK+ EKLLKA QCYLSTT+GP+AGLLFIST+KVAFCSERS+K YSSKG LIR+HYKV+I
Sbjct: 109 SVKDGEKLLKASQCYLSTTSGPLAGLLFISTDKVAFCSERSIKAYSSKGHLIRIHYKVVI 168

Query: 122 PLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQS 175
           PL KI+ +NQS ++KK S KYIE+ TVD FDFWFMGFLNYQKAFKYL+Q ISQ+
Sbjct: 169 PLEKIRSINQSQHVKKPSPKYIEIVTVDDFDFWFMGFLNYQKAFKYLKQVISQA 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106033|ref|XP_002333733.1| predicted protein [Populus trichocarpa] gi|222838390|gb|EEE76755.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 131/181 (72%), Positives = 155/181 (85%), Gaps = 4/181 (2%)

Query: 1   KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQL 60
           K DS+LK +NKLGK+ADNFA+GV+EHVRLGPKI+ETVKGKLSLGAKILQVGG+EKIFKQL
Sbjct: 45  KADSMLKMMNKLGKKADNFANGVREHVRLGPKISETVKGKLSLGAKILQVGGVEKIFKQL 104

Query: 61  FAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVL 120
           F V E+EKLLKA QCYLSTTAGPIAGLLF+STEKVAFCSERS+K  S  G+ +RVHYKVL
Sbjct: 105 FVVSEDEKLLKASQCYLSTTAGPIAGLLFVSTEKVAFCSERSIKISSPSGKSVRVHYKVL 164

Query: 121 IPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTDDV 180
           +PL KIK +NQS N+KK S+KY+E+ TVD F+FWFMGF+NYQK F       S+ CT ++
Sbjct: 165 VPLKKIKMLNQSENVKKPSQKYLELVTVDDFEFWFMGFINYQKTFNIF----SRQCTSNL 220

Query: 181 Q 181
           +
Sbjct: 221 R 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544123|ref|XP_002513124.1| conserved hypothetical protein [Ricinus communis] gi|223548135|gb|EEF49627.1| conserved hypothetical protein [Ricinus communis]

 Score =  271 bits (693), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 128/178 (71%), Positives = 150/178 (84%)

Query: 1   KVDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQL 60
           K+DSV K +NKLG++ADN A G++EHVRLG  I++TVKGK SLGAKILQVGG+EKIFKQL
Sbjct: 43  KLDSVFKMMNKLGRKADNIAQGIREHVRLGSNISQTVKGKFSLGAKILQVGGVEKIFKQL 102

Query: 61  FAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVL 120
           F V E+EKLLK  QCYLSTTAGPIAGLLFIST KV FCSERS+KF S  G+ +R+HYKV+
Sbjct: 103 FRVGEDEKLLKVSQCYLSTTAGPIAGLLFISTCKVGFCSERSVKFSSPNGKSVRIHYKVV 162

Query: 121 IPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTD 178
           IPL K+KR+ +S NMK  S+KY+E+ TVD FDFWFMGFLNYQK FKYLQ AISQ+  D
Sbjct: 163 IPLAKVKRIGKSENMKNPSQKYMEIVTVDEFDFWFMGFLNYQKTFKYLQHAISQNVDD 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.940	0.779	0.668	8.4e-58
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.880	0.739	0.703	4.6e-57
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.875	0.766	0.645	3e-53
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.934	0.632	0.401	3.6e-34
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.858	0.610	0.415	1.2e-33
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.940	0.742	0.386	1.2e-33
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.896	0.551	0.415	1.5e-33

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 119/178 (66%), Positives = 144/178 (80%)

Query:     2 VDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLF 61
             V S+LKR     K+ D F +GV++  ++ PK+TETVK KLSLGA+ILQVGG+EKIFK+LF
Sbjct:    47 VKSILKR-----KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLF 101

Query:    62 AVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLI 121
              V E EKL K  QCYLSTTAGPIAGLLFIS++K+AFCSERS+K  S +G++IRVHYKV I
Sbjct:   102 RVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSI 161

Query:   122 PLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTDD 179
             PL KI RVNQS N KK S+KY+EV TVDGFDFWFMGFL+YQKAF  L++A+S S  D+
Sbjct:   162 PLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALSLSFEDN 219

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 114/162 (70%), Positives = 137/162 (84%)

Query:    14 KRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKAC 73
             K+ D+F +GV++  +LGPK+TETVK KLSLGA+ILQ+GG+EKI+K+LF V +EEKL KA 
Sbjct:    55 KKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAY 114

Query:    74 QCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSV 133
             QCYLSTTAGPIAGLLFIS++K+AFCSERS+K  S +GEL RVHYKV IPL KI  VNQS 
Sbjct:   115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQ 174

Query:   134 NMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQS 175
             N  K S+KY+EV TVDGFDFWFMGFL+YQKAF  L+QA+S S
Sbjct:   175 NTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQALSLS 216

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 104/161 (64%), Positives = 134/161 (83%)

Query:    14 KRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKAC 73
             K+ D+F +G ++  +LGPK+TETVK KLSLGAKILQ+GG+EKI+K+LF V ++EKL KA 
Sbjct:    47 KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAY 106

Query:    74 QCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSV 133
             QCYLSTT G IAGLLFIS++K+AFCSERS+K  S +G+L RVHYKV IPL KI  VNQS 
Sbjct:   107 QCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQ 166

Query:   134 NMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQ 174
             N KK S++Y+EV TVD +DFWFMGF++YQKAF  L++A+++
Sbjct:   167 NTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKALNE 207

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 69/172 (40%), Positives = 110/172 (63%)

Query:     2 VDSVLKRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLF 61
             ++ V+   +   ++A+  A  +  +++ GP ++ET  GK++L AK +  GG E +F+Q+F
Sbjct:    90 LEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIF 149

Query:    62 AVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLI 121
               +  E L K   CYLSTT GP+AG +++S  +VAFCS+R L F +  G+    +Y+V++
Sbjct:   150 GTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVV 209

Query:   122 PLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAIS 173
             PL  +  VN  V  +   EKYI++ TVDG DFWFMGF+NY+KA  +L  ++S
Sbjct:   210 PLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVS 261

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 66/159 (41%), Positives = 104/159 (65%)

Query:    14 KRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKAC 73
             K+A++ A    +H++ GP + +    +++ G KIL  GG EK+FKQ F    +EKLLK  
Sbjct:    97 KKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTY 156

Query:    74 QCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSV 133
              CYLST+AGP+ G++++ST K+AF S+  L  Y    + +  +YKV++P  ++K VN S 
Sbjct:   157 ACYLSTSAGPVLGVMYLSTHKLAFSSDNPLS-YKEGEQTLWSYYKVVLPANQLKAVNPST 215

Query:   134 NMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAI 172
             +    S+KYI+V ++D  +FWFMGF+ Y+ A K LQ+A+
Sbjct:   216 SRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAV 254

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 70/181 (38%), Positives = 116/181 (64%)

Query:     3 DSVLKRVNKLGKR-------ADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEK 55
             D VL+ +N+ GK+       A+    G+K+H++  P I++    +LS G K++  GG E+
Sbjct:    47 DKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPER 106

Query:    56 IFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKG-ELIR 114
             +F++ F V   EKLL +  CY+STT+GP+ G+++IS  ++AFCS+ +++  SS G   + 
Sbjct:   107 VFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVA 166

Query:   115 VHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQ 174
              +YKV++   KI  ++ S N+ K SE+Y+ + T DGF+FWFMGF++Y  AF  L +A+  
Sbjct:   167 AYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKALLN 226

Query:   175 S 175
             S
Sbjct:   227 S 227

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 69/166 (41%), Positives = 105/166 (63%)

Query:     7 KRVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEE 66
             KRV +  K+ ++ A    +H+R  P   +   G+++   K+   GG EKIF+Q F    E
Sbjct:   127 KRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPE 186

Query:    67 EKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKI 126
             E+LL +  CYLST+AGP+ G+L+IS+ K+A+CS+  L  Y +  +    +YKV+IPL ++
Sbjct:   187 EQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLS-YKNGDQTEWSYYKVVIPLHQL 245

Query:   127 KRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAI 172
             K VN S ++   +EKYI+V +VD  +FWFMGFLNY  A   LQ ++
Sbjct:   246 KAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       184   0.00078  110 3  11 22  0.41    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  142 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.53u 0.07s 16.60t   Elapsed:  00:00:01
  Total cpu time:  16.53u 0.07s 16.60t   Elapsed:  00:00:01
  Start:  Sat May 11 06:40:06 2013   End:  Sat May 11 06:40:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FTA0	GEML4_ARATH	No assigned EC number	0.6685	0.9402	0.7792	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	1e-90
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	4e-10
pfam02893	60	pfam02893, GRAM, GRAM domain	2e-06
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	0.001

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  260 bits (666), Expect = 1e-90
 Identities = 90/127 (70%), Positives = 105/127 (82%)

Query: 48  LQVGGMEKIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYS 107
           LQ GG+EK+F+Q F V   EKLLKA QCYLSTTAGP+AG LFIST KVAFCS+R L F S
Sbjct: 1   LQEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTS 60

Query: 108 SKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKY 167
             G+L+R +YKV+IPL KIK VN S N+K  SEKYI++ TVDGF+FWFMGF+NYQKAFKY
Sbjct: 61  PSGQLVRSYYKVVIPLRKIKAVNPSENVKNPSEKYIQIVTVDGFEFWFMGFVNYQKAFKY 120

Query: 168 LQQAISQ 174
           LQQA+SQ
Sbjct: 121 LQQALSQ 127

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 53.0 bits (128), Expect = 4e-10
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 12/68 (17%)

Query: 65  EEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLG 124
           EEEKL+    CYLS T GP+ G L+IS  ++ F S    K             KV+IPL 
Sbjct: 4   EEEKLIADYSCYLSRT-GPVQGRLYISNYRLCFRSNLPGKL-----------TKVVIPLA 51

Query: 125 KIKRVNQS 132
            I R+ +S
Sbjct: 52  DITRIEKS 59

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 11/66 (16%)

Query: 65  EEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLG 124
            EEKL+    CYL     P+ G L+++  ++ F   RS KF             ++IPL 
Sbjct: 3   PEEKLIADYSCYLQRPISPVQGRLYLTNNRLCF---RSDKFGDLT--------VLVIPLA 51

Query: 125 KIKRVN 130
            I+RV 
Sbjct: 52  DIERVE 57

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 12/67 (17%)

Query: 57  FKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVH 116
           F++ FA+ E EKLL     YL     P+ G L+IS     F   RSL        L    
Sbjct: 3   FRKHFALPESEKLLAYYYAYLQRVL-PVYGKLYISDNYFCF---RSL--------LPGTR 50

Query: 117 YKVLIPL 123
            K+++PL
Sbjct: 51  TKMILPL 57

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.41
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.25
PF14470	96	bPH_3: Bacterial PH domain	96.74
KOG4347	671	consensus GTPase-activating protein VRP [General f	88.81
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	84.94
PF08498	67	Sterol_MT_C: Sterol methyltransferase C-terminal;	81.63
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	80.42

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.41  E-value=1.1e-13  Score=95.45  Aligned_cols=66  Identities=32%  Similarity=0.576  Sum_probs=46.1

Q ss_pred             ehhhhccCCcchhhhhccceeeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCccccccc
Q 037271           56 IFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQ  131 (184)
Q Consensus        56 vFkq~F~~~~~EkLlka~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnp  131 (184)
                      -|++.|..+++|+|...+.|+|..+.+|+.|.||||+.+++|+|+.+..-.          ++++|||..|..|..
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k   67 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEK   67 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEE
Confidence            489999999999999999999999999999999999999999998765543          789999999998864

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.25  E-value=5.8e-12  Score=85.00  Aligned_cols=59  Identities=44%  Similarity=0.739  Sum_probs=51.5

Q ss_pred             CCcchhhhhccceeeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccC
Q 037271           63 VKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQS  132 (184)
Q Consensus        63 ~~~~EkLlka~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps  132 (184)
                      ..++|+|...|.|+|+ +.+|+.|.||||+.+++|+|+.+-...          -+++|||+.|.+|+..
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~----------~~~~ipl~~I~~i~k~   60 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT----------PKVVIPLADITRIEKS   60 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee----------EEEEEEHHHeeEEEEC
Confidence            4689999999999999 779999999999999999998665443          2899999999998753

>PF14470 bPH_3: Bacterial PH domain

Probab=96.74  E-value=0.015  Score=41.10  Aligned_cols=94  Identities=17%  Similarity=0.193  Sum_probs=67.0

Q ss_pred             CcchhhhhccceeeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceE
Q 037271           64 KEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYI  143 (184)
Q Consensus        64 ~~~EkLlka~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYI  143 (184)
                      .|||+.+-...|.+-...+.-.|+|+++++||-||+-.++.      .    .....||+++|.+|+-....   -...|
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~------~----~~~~~i~y~~I~~v~~~~g~---~~~~i   68 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG------G----KKFESIPYDDITSVSFKKGI---LGGKI   68 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC------C----ceEEEEEhhheEEEEEEccc---cccEE
Confidence            58999999999988877889999999999999999873221      1    13489999999999997444   34669


Q ss_pred             EEEEecCceeeeeecccHHHHHHHHHHHHh
Q 037271          144 EVYTVDGFDFWFMGFLNYQKAFKYLQQAIS  173 (184)
Q Consensus       144 qIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~  173 (184)
                      .|.| ++..+= ++-+. ..-++.+-+.|+
T Consensus        69 ~i~~-~~~~~~-i~~i~-k~~~~~~~~~i~   95 (96)
T PF14470_consen   69 TIET-NGEKIK-IDNIQ-KGDVKEFYEYIK   95 (96)
T ss_pred             EEEE-CCEEEE-EEEcC-HHHHHHHHHHHh
Confidence            9888 444443 45443 333344444443

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=88.81  E-value=0.49  Score=47.10  Aligned_cols=96  Identities=24%  Similarity=0.321  Sum_probs=75.6

Q ss_pred             hhccCCcchhhhhccceeeecCCC--cceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccC
Q 037271           59 QLFAVKEEEKLLKACQCYLSTTAG--PIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMK  136 (184)
Q Consensus        59 q~F~~~~~EkLlka~~CYLSTtaG--PVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~  136 (184)
                      -.|..+  |+|--.-.|=|-|..-  -..|-||+||..++|.||-+=..            .+++||.-|+.|.-.. ..
T Consensus        14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~c------------~~~~Pl~~vr~ve~~~-~s   78 (671)
T KOG4347|consen   14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWLC------------SFITPLLAVRSVERLD-DS   78 (671)
T ss_pred             ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcccc------------eEeeehhhhhhhhccC-cc
Confidence            456665  9999999999999776  58999999999999999976553            3899999999998755 22


Q ss_pred             CCCCceEEEEEecCceeeeeecccHHHHHHHHH
Q 037271          137 KQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQ  169 (184)
Q Consensus       137 ~p~eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq  169 (184)
                      +--..=|-+.|-.+-.|-|-|...=++.+.-+.
T Consensus        79 s~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~  111 (671)
T KOG4347|consen   79 SLFTQLISLFTSNMVGMRFGGLTERLKLLSKLH  111 (671)
T ss_pred             ccchhhhHHhhcCcceEEecchhhHHHHHHHHh
Confidence            222333667888999999999988777766554

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=84.94  E-value=1.7  Score=31.97  Aligned_cols=85  Identities=24%  Similarity=0.358  Sum_probs=54.2

Q ss_pred             hhhccceeeecCCCcceeeEEeeeceeEeeecCcccee-cCCC---CeeeeEEEEEEecCcccccccCcccCCCCCceEE
Q 037271           69 LLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFY-SSKG---ELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIE  144 (184)
Q Consensus        69 Llka~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~-~p~g---~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIq  144 (184)
                      ++-++.|-+=|..+-+.|+|.|++..+.|..|..-... ....   .....+--..+|+.+|+.|-+.--..+  +-=||
T Consensus         2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr--~~AlE   79 (106)
T PF14844_consen    2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLR--DTALE   79 (106)
T ss_dssp             -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTE--EEEEE
T ss_pred             EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCc--ceEEE
Confidence            45578899999999999999999999999998111110 0000   001112235689999999987544443  34489


Q ss_pred             EEEecCceeee
Q 037271          145 VYTVDGFDFWF  155 (184)
Q Consensus       145 IvTvD~~eFWF  155 (184)
                      |.+.||..+-|
T Consensus        80 iF~~dg~s~f~   90 (106)
T PF14844_consen   80 IFFSDGRSYFF   90 (106)
T ss_dssp             EEETTS-EEEE
T ss_pred             EEEcCCcEEEE
Confidence            99999988754

>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []

Probab=81.63  E-value=0.7  Score=33.56  Aligned_cols=53  Identities=32%  Similarity=0.348  Sum_probs=47.4

Q ss_pred             HHHhhhcchhhhhhhhhhhcccCCChhHHHhhhhccccchhhccChheehhhh
Q 037271            8 RVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQL   60 (184)
Q Consensus         8 ~~~~~~rKae~~a~~i~~h~k~gp~~set~~Gklslgakil~~GG~ekvFkq~   60 (184)
                      +|+.++|..-...=.+.|-+++.|+=+-.+.--|..+|.-|.+||-++||--.
T Consensus         6 r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPM   58 (67)
T PF08498_consen    6 RMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPM   58 (67)
T ss_pred             eccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCch
Confidence            57788888888888899999999999999999999999999999999999643

; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=80.42  E-value=5.5  Score=26.72  Aligned_cols=64  Identities=20%  Similarity=0.287  Sum_probs=45.3

Q ss_pred             ceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCccc----CCCCCceEEEEEecCceeeeee
Q 037271           93 EKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNM----KKQSEKYIEVYTVDGFDFWFMG  157 (184)
Q Consensus        93 ~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~----~~p~eKYIqIvTvD~~eFWFMG  157 (184)
                      +|.++-.+.-|.+..++.+.....++-+|||..+ .|.+..+.    ..+.+..++|.+.++-.++|..
T Consensus        19 ~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~   86 (104)
T PF00169_consen   19 KRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSA   86 (104)
T ss_dssp             EEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEE
T ss_pred             EEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEc
Confidence            4455555556666555544445567789999999 77776666    3678888999998887888764

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 9e-05
 Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 61/197 (30%)

Query: 15  RADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLF----AVKEEEKLL 70
             DN+     +HV    K+T  ++   SL   +L+     K+F +L     +      LL
Sbjct: 343 TWDNW-----KHVNC-DKLTTIIE--SSL--NVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 71  KACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVH--YKVLIPLGKIKR 128
                 +  +              V    + SL     K   I +   Y  L    K+K 
Sbjct: 393 SLIWFDVIKS---------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL----KVKL 439

Query: 129 VNQSVNMKKQSEKY--IEVY--------TVDGFDFWFMG------------------FLN 160
            N+    +   + Y   + +         +D + +  +G                  FL+
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 161 YQKAFKYLQQAISQSCT 177
               F++L+Q I    T
Sbjct: 500 ----FRFLEQKIRHDST 512

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	93.4
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	91.32
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	86.16
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	83.68

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=93.40  E-value=0.28  Score=45.79  Aligned_cols=102  Identities=14%  Similarity=0.152  Sum_probs=62.9

Q ss_pred             ccCCcchhhhhccce--eeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCC
Q 037271           61 FAVKEEEKLLKACQC--YLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQ  138 (184)
Q Consensus        61 F~~~~~EkLlka~~C--YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p  138 (184)
                      |...|||.++..-.-  |++.-.||+.|+|||++-|+.|.++..        +.   .+.+-|||..|..|.........
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~--------~~---~~~~~iPL~~I~~vek~~~~s~~   75 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFVLDASLGVINRVEKIGGASSR   75 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEEEEEEGGGEEEEEEECCTTCC
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC--------Cc---cEEEEeeccceEEEEEcCCCCcC
Confidence            567899998855211  555567999999999999999999531        11   24578999888777653211111


Q ss_pred             --CCceEEEEEecCceeeeeecccHHHHHHHHHHHHhh
Q 037271          139 --SEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQ  174 (184)
Q Consensus       139 --~eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~~  174 (184)
                        .--.|+|..-|- ..+=.+|-.=+...+.+-++|+.
T Consensus        76 ~~~~~~l~I~CKDf-r~~~f~f~~~~~~~~~v~~~L~~  112 (528)
T 1zsq_A           76 GENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLMK  112 (528)
T ss_dssp             STTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHHH
T ss_pred             CCCCceEEEEccCC-eEEEEEecCchHHHHHHHHHHHH
Confidence              112477777664 44444565443334455566654

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=91.32  E-value=0.62  Score=44.79  Aligned_cols=120  Identities=14%  Similarity=0.141  Sum_probs=62.1

Q ss_pred             hccccchhhccChheehhhhccCCcchhhhhccc-e-eeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEE
Q 037271           41 LSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQ-C-YLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYK  118 (184)
Q Consensus        41 lslgakil~~GG~ekvFkq~F~~~~~EkLlka~~-C-YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YK  118 (184)
                      +++.-++|+.|-.. -=.--|...|||.+...-. . |++.-.||+.|+|||++.|+.|.+...        +.   .+.
T Consensus        60 ~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~--------~~---~~~  127 (657)
T 1lw3_A           60 FSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFV  127 (657)
T ss_dssp             ------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEE
T ss_pred             hhhhhhhhhccccc-ccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC--------Cc---ceE
Confidence            34444455554321 1112377899999985421 1 445456899999999999999998521        11   245


Q ss_pred             EEEecCcccccccCcccCCCCC--ceEEEEEecCceeeeeecccHHHHHHHHHHHHh
Q 037271          119 VLIPLGKIKRVNQSVNMKKQSE--KYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAIS  173 (184)
Q Consensus       119 VvIPL~kik~vnps~n~~~p~e--KYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~  173 (184)
                      +-|||..|..|..........+  -.|+|..-|- ..+=.+|-.=+...+.+-++|.
T Consensus       128 ~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDf-R~~~f~f~~~~~~~~~v~~~L~  183 (657)
T 1lw3_A          128 LDASLGVINRVEKIGGASSRGENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLM  183 (657)
T ss_dssp             EEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHH
T ss_pred             EEecccceEEEEecCCCcccCCCCceEEEEecCC-cEEEEEeCCccchHHHHHHHHH
Confidence            6899988888765322111111  2477766664 4444456543332334445554

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=86.16  E-value=0.86  Score=35.32  Aligned_cols=51  Identities=22%  Similarity=0.253  Sum_probs=35.6

Q ss_pred             CCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceE
Q 037271           81 AGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYI  143 (184)
Q Consensus        81 aGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYI  143 (184)
                      ++--.|.||++|.||.|-.+..     +  .     .-+.|||..|+.+...+..-..+-|++
T Consensus        35 ~~~k~G~l~LTshRli~~d~~~-----~--~-----~s~~lpl~~v~~~e~~~~~f~~s~Ki~   85 (140)
T 2hth_B           35 IKFDAGTLLLSTHRLIWRDQKN-----H--E-----CCMAILLSQIVFIEEQAAGIGKSAKIV   85 (140)
T ss_dssp             SCCCCEEEEEESSEEEEEETTC-----C--S-----CCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred             CCCcCCEEEEecCEEEEecCCC-----C--c-----eEEEEEhHHeeeeeeeccccccCceEE
Confidence            4568899999999999965432     0  0     237788888887777666655555554

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=83.68  E-value=5.4  Score=37.14  Aligned_cols=79  Identities=13%  Similarity=0.125  Sum_probs=44.7

Q ss_pred             eecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceEEEEEecCceeeee
Q 037271           77 LSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFM  156 (184)
Q Consensus        77 LSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFM  156 (184)
                      ++.+.+|+.|+|+|++.|+.|.+|.+        +.      +.||+..|.+|.-....  ....-|+|..-|-.-+=| 
T Consensus        18 ~~~~~~~~~GtL~lTn~~LiF~~~~~--------~e------~wi~~~~I~~VeK~~~~--~~~~~l~I~CKDfr~~~f-   80 (512)
T 2yf0_A           18 FSTSNKSLTGTLYLTATHLLFIDSHQ--------KE------TWILHHHIASVEKLALT--TSGCPLVIQCKNFRTVHF-   80 (512)
T ss_dssp             ------CCEEEEEECSSEEEEEESSS--------CE------EEEEGGGEEEEEECCCB--TTBEEEEEEETTSCEEEE-
T ss_pred             cCCCCCceeEEEEEECCEEEEeCCCC--------Cc------eEecccceeEEEEecCC--CCCceEEEEecCCcEEEE-
Confidence            34567999999999999999999542        22      45677777777532111  122457777777655544 


Q ss_pred             ecccHHHHHHHHHHHHh
Q 037271          157 GFLNYQKAFKYLQQAIS  173 (184)
Q Consensus       157 GFvnY~kA~k~Lq~a~~  173 (184)
                      .|-.=+.+ +.+-++|.
T Consensus        81 ~f~~~~~~-~~v~~sL~   96 (512)
T 2yf0_A           81 IVPRERDC-HDIYNSLL   96 (512)
T ss_dssp             EESCHHHH-HHHHHHHH
T ss_pred             EeCChHHH-HHHHHHHH
Confidence            45543333 33334444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	96.79
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	93.67

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0012  Score=48.56  Aligned_cols=101  Identities=15%  Similarity=0.166  Sum_probs=62.6

Q ss_pred             Ccchhhhhc--cceeeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccC--CCC
Q 037271           64 KEEEKLLKA--CQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMK--KQS  139 (184)
Q Consensus        64 ~~~EkLlka--~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~--~p~  139 (184)
                      .|||.+.-.  -.=|+..-.||+-|+||++|-|+.|.++..       .. .   +.+-|||..|..|.......  +..
T Consensus         6 lpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~-------~~-~---~~~~ipl~~I~~v~k~~~~~~~~~~   74 (125)
T d1zsqa1           6 LPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER-------DP-P---FVLDASLGVINRVEKIGGASSRGEN   74 (125)
T ss_dssp             CTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS-------SS-C---EEEEEEGGGEEEEEEECCTTCCSTT
T ss_pred             CCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCC-------Cc-c---EEEEeccceeeeeeecccccccCCc
Confidence            477766422  224566678999999999999999976421       11 1   23569999988886533222  122


Q ss_pred             CceEEEEEecCceeeeeecccHHHHHHHHHHHHhhcC
Q 037271          140 EKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSC  176 (184)
Q Consensus       140 eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~~~~  176 (184)
                      --.|+|..-|---+=|. |..=..-.+.+.++|+...
T Consensus        75 ~~~L~I~CKDfr~~~f~-f~~e~~~~~~v~~~L~~~a  110 (125)
T d1zsqa1          75 SYGLETVCKDIRNLRFA-HKPEGRTRRSIFENLMKYA  110 (125)
T ss_dssp             CSEEEEEETTTEEEEEE-CCGGGCCHHHHHHHHHHHS
T ss_pred             cccEEEEeccCeEEEEE-EcCCccHHHHHHHHHHHhC
Confidence            23699999887665553 3211122356777776653

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.2  Score=36.24  Aligned_cols=66  Identities=20%  Similarity=0.253  Sum_probs=48.1

Q ss_pred             ceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceEEEEEecCceeeeeecccHHH
Q 037271           84 IAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQK  163 (184)
Q Consensus        84 VaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvnY~k  163 (184)
                      ..|+|||++.+|+|..+.+=.            -+|.+++..|+.-..|-  +..+.-=++||.-|+-.|=|- |.|+.-
T Consensus        20 ~~GtL~l~~d~l~W~p~~~~~------------~~v~~~~~~I~~~q~Sp--e~s~Kv~Lkiv~~~~~s~~F~-Ftn~~~   84 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGKDR------------FTISHMYADIKCQKISP--EGKAKIQLQLVLHAGDTTNFH-FSNEST   84 (108)
T ss_dssp             CEEEEEECSSEEEEEESSCSS------------CSEEEETTTEEEEEECC--TTCSSEEEEEEETTSCEEEEE-ECCTTT
T ss_pred             CCcEEEEEcCeEEEEcCCCCC------------ceEEEEhhhhhceecCC--CCcccceeEEEEeCCCeEEEE-ECChHH
Confidence            679999999999997654321            22889999998755443  445556699999888877664 778854


Q ss_pred             H
Q 037271          164 A  164 (184)
Q Consensus       164 A  164 (184)
                      |
T Consensus        85 ~   85 (108)
T d2rnrb1          85 A   85 (108)
T ss_dssp             H
T ss_pred             H
Confidence            4