Citrus Sinensis ID: 037282

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50------
Protein Sequence
MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEccccccEEEEcccccHHHHHHHHccccccEEcc
Secondary Structure Prediction (SSPRO)
ccccHHHcccccccccccccEEEcccccHHHHHHcHHHHHHHHHHHHHHcccEEcc
Coil and Loop (DISEMBL)
mghsnvwnshpktygpgsracrvcgnphAIIRKYGLMCCRQcfrsnakeigfvkyr
Flexible Loop (DISEMBL)
mghsnvwnshpktygpgsracrVCGNPHAIIRKYGLMCCRQCFrsnakeigfvkyr
Low Complexity Region (SEG)
MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR
Disordered region (IsUnstruct)
****************GSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFV***
Disordered Region (DISOPRED)
******WNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR
Disordered Region (DISEMBL)
MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR
Disordered Region (DISPRO)
**********PKTY*PGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	56	2.2.26 [Sep-21-2011]
Q680P8	56	40S ribosomal protein S29	yes	no	1.0	1.0	0.875	3e-23
Q5I7K3	56	40S ribosomal protein S29	N/A	no	1.0	1.0	0.839	4e-23
Q7XYB0	56	40S ribosomal protein S29	N/A	no	1.0	1.0	0.642	2e-17
Q98SC7	56	40S ribosomal protein S29	yes	no	1.0	1.0	0.607	9e-16
Q4PM47	56	40S ribosomal protein S29	N/A	no	0.964	0.964	0.666	2e-15
Q6F473	56	40S ribosomal protein S29	N/A	no	0.964	0.964	0.648	3e-15
Q4LAY1	56	40S ribosomal protein S29	N/A	no	0.964	0.964	0.648	3e-15
Q8WQI3	56	40S ribosomal protein S29	N/A	no	0.964	0.964	0.648	4e-15
Q5EMX3	56	40S ribosomal protein S29	N/A	no	1.0	1.0	0.625	4e-15
Q9C2P2	56	40S ribosomal protein S29	N/A	no	1.0	1.0	0.625	5e-15

>sp|Q680P8|RS29_ARATH 40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/56 (87%), Positives = 51/56 (91%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGHSNVWNSHPK YGPGSR CRVCGN H +IRKYGL CCRQCFRSNAKEIGF+KYR
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56

Arabidopsis thaliana (taxid: 3702)

>sp|Q5I7K3|RS29_WHEAT 40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=1 SV=1

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/56 (83%), Positives = 51/56 (91%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGHSNVWNSHPK YG GSR CRVCGN H +IRKYGLMCCRQCFRS+AK+IGF+KYR
Sbjct: 1  MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56

Triticum aestivum (taxid: 4565)

>sp|Q7XYB0|RS29_GRIJA 40S ribosomal protein S29 OS=Griffithsia japonica GN=RPS29 PE=3 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 45/56 (80%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGH N+W SHP+ YG GSR+C++CGN H +IRKY +  CRQCFR  AK+IGF+KYR
Sbjct: 1  MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIKYR 56

Griffithsia japonica (taxid: 83288)

>sp|Q98SC7|RS29_GUITH 40S ribosomal protein S29A OS=Guillardia theta GN=rps29A PE=3 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 41/56 (73%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          M H N+WN H +TYG GSR CR+CGN   +IRKYGL  CRQCFR  ++ +GF KYR
Sbjct: 1  MSHKNIWNKHSRTYGKGSRGCRICGNRSGLIRKYGLSICRQCFREKSQNLGFDKYR 56

Guillardia theta (taxid: 55529)

>sp|Q4PM47|RS29_IXOSC 40S ribosomal protein S29 OS=Ixodes scapularis GN=RpS29 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 41/54 (75%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
          MGH N+W SHP+ YGPGSR CRVC N H +IRKYGL  CR+CFR  A +IGF K
Sbjct: 1  MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKK 54

Ixodes scapularis (taxid: 6945)

>sp|Q6F473|RS29_PLUXY 40S ribosomal protein S29 OS=Plutella xylostella GN=RpS29 PE=3 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 41/54 (75%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
          MGH+N+W SHP+ YG GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct: 1  MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54

Plutella xylostella (taxid: 51655)

>sp|Q4LAY1|RS29_SCALT 40S ribosomal protein S29 OS=Scarabaeus laticollis GN=RpS29 PE=3 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 40/54 (74%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
          MGH N+W SHP+ YG GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct: 1  MGHQNIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54

Scarabaeus laticollis (taxid: 292456)

>sp|Q8WQI3|RS29_SPOFR 40S ribosomal protein S29 OS=Spodoptera frugiperda GN=RpS29 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 41/54 (75%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
          MGH+N+W SHP+ YG GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct: 1  MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54

Spodoptera frugiperda (taxid: 7108)

>sp|Q5EMX3|RS29_MAGO7 40S ribosomal protein S29 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=RPS29 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 43/56 (76%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          M H +VWNS P+TYG G+R+CRVC +   +IRKYGL  CRQCFR  A +IGFVK+R
Sbjct: 1  MSHDSVWNSRPRTYGKGARSCRVCTHRAGLIRKYGLDICRQCFREKAADIGFVKHR 56

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|Q9C2P2|RS29_NEUCR 40S ribosomal protein S29 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rps-29 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 42/56 (75%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          M H +VWNS P+TYG GSR+CRVC +   +IRKYGL  CRQCFR  A +IGF K+R
Sbjct: 1  MSHESVWNSRPRTYGKGSRSCRVCTHSAGLIRKYGLNICRQCFREKANDIGFTKHR 56

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	56
218193824	828	hypothetical protein OsI_13694 [Oryza sa	0.964	0.065	0.888	3e-26
108711309	828	ribosomal protein S14p/S29e containing p	0.964	0.065	0.888	4e-26
388494112	56	unknown [Lotus japonicus]	1.0	1.0	0.982	3e-25
224056234	56	predicted protein [Populus trichocarpa]	1.0	1.0	0.928	1e-23
225428963	56	PREDICTED: 40S ribosomal protein S29-lik	1.0	1.0	0.910	1e-23
224067216	56	predicted protein [Populus trichocarpa]	1.0	1.0	0.910	1e-23
225442077	56	PREDICTED: 40S ribosomal protein S29-lik	1.0	1.0	0.910	2e-23
218186927	105	hypothetical protein OsI_38471 [Oryza sa	0.964	0.514	0.888	2e-23
118483029	56	unknown [Populus trichocarpa]	1.0	1.0	0.892	3e-23
115488728	56	Os12g0508300 [Oryza sativa Japonica Grou	1.0	1.0	0.892	4e-23

>gi|218193824|gb|EEC76251.1| hypothetical protein OsI_13694 [Oryza sativa Indica Group]

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/54 (88%), Positives = 51/54 (94%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
          MGHSNVWNSHPK YGPGSR CRVCGNPH +IRKYGLMCCRQCFRSNAK+IGF+K
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108711309|gb|ABF99104.1| ribosomal protein S14p/S29e containing protein, expressed [Oryza sativa Japonica Group] gi|222625880|gb|EEE60012.1| hypothetical protein OsJ_12757 [Oryza sativa Japonica Group]

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/54 (88%), Positives = 51/54 (94%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
          MGHSNVWNSHPK YGPGSR CRVCGNPH +IRKYGLMCCRQCFRSNAK+IGF+K
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494112|gb|AFK35122.1| unknown [Lotus japonicus]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/56 (98%), Positives = 56/56 (100%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGF+KYR
Sbjct: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFIKYR 56

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056234|ref|XP_002298768.1| predicted protein [Populus trichocarpa] gi|222846026|gb|EEE83573.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/56 (92%), Positives = 53/56 (94%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGHSNVWNSHPK YGPGSR CRVCGNPH IIRKYGLMCCRQCFRSNAKEIGF+KYR
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR 56

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428963|ref|XP_002263938.1| PREDICTED: 40S ribosomal protein S29-like [Vitis vinifera]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 54/56 (96%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGHSNVWNSHPK+YGPGSR CRVCGNPH +IRKYGLMCCRQCFRSNAKEIGF+KYR
Sbjct: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067216|ref|XP_002302413.1| predicted protein [Populus trichocarpa] gi|224129898|ref|XP_002320698.1| predicted protein [Populus trichocarpa] gi|118482417|gb|ABK93131.1| unknown [Populus trichocarpa] gi|222844139|gb|EEE81686.1| predicted protein [Populus trichocarpa] gi|222861471|gb|EEE99013.1| predicted protein [Populus trichocarpa]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 53/56 (94%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGHSN+WNSHPK YGPGSR CRVCGNPH IIRKYGLMCCRQCFRSNAKEIGF+KYR
Sbjct: 1  MGHSNIWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR 56

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442077|ref|XP_002271801.1| PREDICTED: 40S ribosomal protein S29-like [Vitis vinifera] gi|225444692|ref|XP_002277856.1| PREDICTED: 40S ribosomal protein S29-like isoform 1 [Vitis vinifera] gi|255538096|ref|XP_002510113.1| 40S ribosomal protein S29, putative [Ricinus communis] gi|356497504|ref|XP_003517600.1| PREDICTED: 40S ribosomal protein S29-like [Glycine max] gi|356536119|ref|XP_003536587.1| PREDICTED: 40S ribosomal protein S29 [Glycine max] gi|356538933|ref|XP_003537955.1| PREDICTED: 40S ribosomal protein S29-like isoform 1 [Glycine max] gi|356575720|ref|XP_003555985.1| PREDICTED: 40S ribosomal protein S29-like [Glycine max] gi|449438331|ref|XP_004136942.1| PREDICTED: 40S ribosomal protein S29-like [Cucumis sativus] gi|449447053|ref|XP_004141284.1| PREDICTED: 40S ribosomal protein S29-like [Cucumis sativus] gi|449469128|ref|XP_004152273.1| PREDICTED: 40S ribosomal protein S29-like [Cucumis sativus] gi|449484349|ref|XP_004156858.1| PREDICTED: 40S ribosomal protein S29-like [Cucumis sativus] gi|449508184|ref|XP_004163243.1| PREDICTED: 40S ribosomal protein S29-like [Cucumis sativus] gi|449520128|ref|XP_004167086.1| PREDICTED: 40S ribosomal protein S29-like [Cucumis sativus] gi|223550814|gb|EEF52300.1| 40S ribosomal protein S29, putative [Ricinus communis]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 53/56 (94%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGHSNVWNSHPK YGPGSR CRVCGNPH +IRKYGLMCCRQCFRSNAKEIGF+KYR
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218186927|gb|EEC69354.1| hypothetical protein OsI_38471 [Oryza sativa Indica Group]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/54 (88%), Positives = 51/54 (94%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
          MGHSNVWNSHPK YGPGSR CRVCGNPH +IRKYGLMCCRQCFRSNAK+IGF+K
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483029|gb|ABK93425.1| unknown [Populus trichocarpa]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 53/56 (94%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGHSN+WNSHP+ YGPGSR CRVCGNPH IIRKYGLMCCRQCFRSNAKEIGF+KYR
Sbjct: 1  MGHSNIWNSHPRNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR 56

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115488728|ref|NP_001066851.1| Os12g0508300 [Oryza sativa Japonica Group] gi|297722587|ref|NP_001173657.1| Os03g0773150 [Oryza sativa Japonica Group] gi|31745220|gb|AAP68880.1| putative ribosomal protein S29 [Oryza sativa Japonica Group] gi|77552059|gb|ABA94856.1| 40S ribosomal protein S29, putative, expressed [Oryza sativa Japonica Group] gi|113649358|dbj|BAF29870.1| Os12g0508300 [Oryza sativa Japonica Group] gi|125535057|gb|EAY81605.1| hypothetical protein OsI_36775 [Oryza sativa Indica Group] gi|125577778|gb|EAZ19000.1| hypothetical protein OsJ_34533 [Oryza sativa Japonica Group] gi|149391293|gb|ABR25664.1| 40S ribosomal protein S29 [Oryza sativa Indica Group] gi|255674934|dbj|BAH92385.1| Os03g0773150 [Oryza sativa Japonica Group]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 53/56 (94%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGHSNVWNSHPK YGPGSR CRVCGNPH +IRKYGLMCCRQCFRSNAK+IGF+KYR
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR 56

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	56
TAIR|locus:2097119	56	AT3G43980 [Arabidopsis thalian	1.0	1.0	0.875	8.4e-26
TAIR|locus:2097154	56	AT3G44010 [Arabidopsis thalian	1.0	1.0	0.875	8.4e-26
TAIR|locus:505006550	56	AT4G33865 [Arabidopsis thalian	1.0	1.0	0.875	8.4e-26
ZFIN|ZDB-GENE-040622-5	56	rps29 "ribosomal protein S29"	0.964	0.964	0.666	6.7e-17
UNIPROTKB|E1C3G8	56	RPS29 "Uncharacterized protein	0.964	0.964	0.629	2.3e-16
UNIPROTKB|P62276	56	RPS29 "40S ribosomal protein S	0.964	0.964	0.629	2.3e-16
UNIPROTKB|P62273	56	RPS29 "40S ribosomal protein S	0.964	0.964	0.629	2.3e-16
UNIPROTKB|F2Z5R7	56	RPS29 "40S ribosomal protein S	0.964	0.964	0.629	2.3e-16
MGI|MGI:107681	56	Rps29 "ribosomal protein S29"	0.964	0.964	0.629	2.3e-16
RGD|3596	56	Rps29 "ribosomal protein S29"	0.964	0.964	0.629	2.3e-16

TAIR|locus:2097119 AT3G43980 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 49/56 (87%), Positives = 51/56 (91%)

Query:     1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
             MGHSNVWNSHPK YGPGSR CRVCGN H +IRKYGL CCRQCFRSNAKEIGF+KYR
Sbjct:     1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

TAIR|locus:2097154 AT3G44010 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 49/56 (87%), Positives = 51/56 (91%)

Query:     1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
             MGHSNVWNSHPK YGPGSR CRVCGN H +IRKYGL CCRQCFRSNAKEIGF+KYR
Sbjct:     1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

TAIR|locus:505006550 AT4G33865 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 49/56 (87%), Positives = 51/56 (91%)

Query:     1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
             MGHSNVWNSHPK YGPGSR CRVCGN H +IRKYGL CCRQCFRSNAKEIGF+KYR
Sbjct:     1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

ZFIN|ZDB-GENE-040622-5 rps29 "ribosomal protein S29" [Danio rerio (taxid:7955)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 36/54 (66%), Positives = 42/54 (77%)

Query:     1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
             MGH  ++ SHP+ YG GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGFVK
Sbjct:     1 MGHQQLYWSHPRKYGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IMP

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP

GO:0001570 "vasculogenesis" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

UNIPROTKB|E1C3G8 RPS29 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query:     1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
             MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:     1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

UNIPROTKB|P62276 RPS29 "40S ribosomal protein S29" [Bos taurus (taxid:9913)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query:     1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
             MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:     1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54

GO:0046872 "metal ion binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62273 RPS29 "40S ribosomal protein S29" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query:     1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
             MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:     1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0015935 "small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;TAS

GO:0008270 "zinc ion binding" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z5R7 RPS29 "40S ribosomal protein S29" [Sus scrofa (taxid:9823)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query:     1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
             MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:     1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:107681 Rps29 "ribosomal protein S29" [Mus musculus (taxid:10090)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query:     1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
             MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:     1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54

GO:0003735 "structural constituent of ribosome" evidence=ISO;ISA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISA

GO:0008270 "zinc ion binding" evidence=ISO;ISA

GO:0015935 "small ribosomal subunit" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;ISA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|3596 Rps29 "ribosomal protein S29" [Rattus norvegicus (taxid:10116)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query:     1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
             MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:     1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0015935 "small ribosomal subunit" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA;TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P14041	RS14Z_METVA	No assigned EC number	0.5813	0.75	0.7924	yes	no
Q2NFX1	RS14Z_METST	No assigned EC number	0.5333	0.8035	0.9574	yes	no
Q6UZG0	RS29_HIPCM	No assigned EC number	0.6481	0.9642	0.9642	N/A	no
Q8TW16	RS14Z_METKA	No assigned EC number	0.5454	0.7857	0.9166	yes	no
Q757G1	RS29_ASHGO	No assigned EC number	0.6428	1.0	1.0	yes	no
Q98SC7	RS29_GUITH	No assigned EC number	0.6071	1.0	1.0	yes	no
Q975J4	RS14Z_SULTO	No assigned EC number	0.5333	0.8035	0.8333	yes	no
O26125	RS14Z_METTH	No assigned EC number	0.5777	0.8035	0.9	yes	no
Q6F473	RS29_PLUXY	No assigned EC number	0.6481	0.9642	0.9642	N/A	no
Q9NB51	RS29_CULQU	No assigned EC number	0.6296	0.9642	0.9642	N/A	no
Q56FL2	RS29_LYSTE	No assigned EC number	0.6481	0.9642	0.9642	N/A	no
Q6CPG3	RS29_KLULA	No assigned EC number	0.5714	1.0	1.0	yes	no
Q5UAL3	RS29_BOMMO	No assigned EC number	0.6481	0.9642	0.9642	N/A	no
Q4PM47	RS29_IXOSC	No assigned EC number	0.6666	0.9642	0.9642	N/A	no
Q76P36	RS29_DICDI	No assigned EC number	0.6153	0.9285	0.9454	yes	no
Q9VH69	RS29_DROME	No assigned EC number	0.6111	0.9642	0.9642	yes	no
Q7XYB0	RS29_GRIJA	No assigned EC number	0.6428	1.0	1.0	N/A	no
Q680P8	RS29_ARATH	No assigned EC number	0.875	1.0	1.0	yes	no
Q5I7K3	RS29_WHEAT	No assigned EC number	0.8392	1.0	1.0	N/A	no
Q6BY86	RS29_DEBHA	No assigned EC number	0.5714	1.0	1.0	yes	no
P58731	RS14Z_AERPE	No assigned EC number	0.4528	0.9464	0.9814	yes	no
Q6QAP6	RS29_PIG	No assigned EC number	0.6111	0.9642	0.9642	yes	no
O05635	RS14Z_SULAC	No assigned EC number	0.4666	0.8035	0.8333	yes	no
Q5MGJ4	RS29_LONON	No assigned EC number	0.6296	0.9642	0.9642	N/A	no
Q97BW2	RS14Z_THEVO	No assigned EC number	0.4807	0.9107	0.9622	yes	no
Q8WQI3	RS29_SPOFR	No assigned EC number	0.6481	0.9642	0.9642	N/A	no
Q9C2P2	RS29_NEUCR	No assigned EC number	0.625	1.0	1.0	N/A	no
P62012	RS14Z_PYRAB	No assigned EC number	0.4363	0.9821	0.9821	yes	no
Q2FSG1	RS14Z_METHJ	No assigned EC number	0.3703	0.9642	0.9642	yes	no
Q90YP2	RS29_ICTPU	No assigned EC number	0.6481	0.9642	0.9642	N/A	no
O74329	RS29_SCHPO	No assigned EC number	0.5892	1.0	1.0	yes	no
Q5R9J0	RS29_PONAB	No assigned EC number	0.6296	0.9642	0.9642	yes	no
Q6FWE3	RS29_CANGA	No assigned EC number	0.6071	1.0	1.0	yes	no
Q6LXD9	RS14Z_METMP	No assigned EC number	0.5813	0.75	0.7924	yes	no
Q9HIS1	RS14Z_THEAC	No assigned EC number	0.4615	0.9107	0.9622	yes	no
Q4LAY1	RS29_SCALT	No assigned EC number	0.6481	0.9642	0.9642	N/A	no
P41057	RS29A_YEAST	No assigned EC number	0.625	1.0	1.0	yes	no
Q8U013	RS14Z_PYRFU	No assigned EC number	0.4363	0.9821	0.9821	yes	no
P62013	RS14Z_PYRHO	No assigned EC number	0.4363	0.9821	0.9821	yes	no
P62274	RS29_MOUSE	No assigned EC number	0.6296	0.9642	0.9642	yes	no
P62276	RS29_BOVIN	No assigned EC number	0.6296	0.9642	0.9642	yes	no
Q5EMX3	RS29_MAGO7	No assigned EC number	0.625	1.0	1.0	N/A	no
P62273	RS29_HUMAN	No assigned EC number	0.6296	0.9642	0.9642	yes	no
Q5JJG2	RS14Z_PYRKO	No assigned EC number	0.4363	0.9821	0.9821	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	56
PTZ00218	54	PTZ00218, PTZ00218, 40S ribosomal protein S29; Pro	6e-24
PRK05766	52	PRK05766, rps14P, 30S ribosomal protein S14P; Revi	8e-15
COG0199	61	COG0199, RpsN, Ribosomal protein S14 [Translation,	9e-11
pfam00253	53	pfam00253, Ribosomal_S14, Ribosomal protein S14p/S	9e-10
PRK08061	61	PRK08061, rpsN, 30S ribosomal protein S14; Reviewe	4e-05
PRK06911	100	PRK06911, rpsN, 30S ribosomal protein S14; Reviewe	0.002

>gnl|CDD|185518 PTZ00218, PTZ00218, 40S ribosomal protein S29; Provisional

 Score = 83.6 bits (207), Expect = 6e-24
 Identities = 35/53 (66%), Positives = 42/53 (79%)

Query: 4  SNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
           +++N+HP+TYG GSR CRVC N H +IRKYGL  CRQCFR NA+ IGF KYR
Sbjct: 2  GHLFNTHPRTYGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54

Length = 54

>gnl|CDD|235598 PRK05766, rps14P, 30S ribosomal protein S14P; Reviewed

 Score = 60.7 bits (148), Expect = 8e-15
 Identities = 24/47 (51%), Positives = 30/47 (63%)

Query: 10 HPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
            + YG G+R C+ CG    +IRKYGL  CRQCFR  A ++GF KY 
Sbjct: 6  KKRKYGKGARECQRCGRKQGLIRKYGLYLCRQCFREVAPKLGFKKYS 52

Length = 52

>gnl|CDD|223277 COG0199, RpsN, Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]

 Score = 50.7 bits (122), Expect = 9e-11
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 5  NVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNA---KEIGFVKYR 56
                PK+ G G   CR CG P  +IRK+GL  CR CFR  A   +  G  K  
Sbjct: 8  LKALPRPKSPGRGRNRCRRCGRPRGVIRKFGL--CRICFRELAHKGEIPGVKKAS 60

Length = 61

>gnl|CDD|201115 pfam00253, Ribosomal_S14, Ribosomal protein S14p/S29e

 Score = 47.9 bits (115), Expect = 9e-10
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 5  NVWNSHPKT-YGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVK 54
           +      +        C + G P  +IRK+GL   R CFR  A +    G  K
Sbjct: 2  KLSKLPRNSSPTRIRNRCVLTGRPRGVIRKFGL--SRICFRELAHKGLIPGVKK 53

This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes. Length = 53

>gnl|CDD|181216 PRK08061, rpsN, 30S ribosomal protein S14; Reviewed

 Score = 36.4 bits (85), Expect = 4e-05
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 21 CRVCGNPHAIIRKYGLMCCRQCFRSNA 47
          C  CG PH++ RK+GL  CR CFR  A
Sbjct: 24 CERCGRPHSVYRKFGL--CRICFRELA 48

Length = 61

>gnl|CDD|180742 PRK06911, rpsN, 30S ribosomal protein S14; Reviewed

 Score = 32.3 bits (73), Expect = 0.002
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 8  NSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 44
          NS+P  Y      C+ CG PHA+ RK+ L  CR C R
Sbjct: 53 NSNPVRY---VTRCKQCGRPHAVYRKFNL--CRICLR 84

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	56
PTZ00218	54	40S ribosomal protein S29; Provisional	99.97
KOG3506	56	consensus 40S ribosomal protein S29 [Translation,	99.96
PRK05766	52	rps14P 30S ribosomal protein S14P; Reviewed	99.93
COG0199	61	RpsN Ribosomal protein S14 [Translation, ribosomal	99.88
PRK08061	61	rpsN 30S ribosomal protein S14; Reviewed	99.76
PF00253	55	Ribosomal_S14: Ribosomal protein S14p/S29e; InterP	99.75
PRK06911	100	rpsN 30S ribosomal protein S14; Reviewed	99.63
PRK08881	101	rpsN 30S ribosomal protein S14; Reviewed	99.57
CHL00074	100	rps14 ribosomal protein S14	99.56
KOG1741	103	consensus Mitochondrial/chloroplast ribosomal prot	99.13

>PTZ00218 40S ribosomal protein S29; Provisional

Probab=99.97  E-value=9.4e-33  Score=155.16  Aligned_cols=53  Identities=66%  Similarity=1.307  Sum_probs=51.8

Q ss_pred             ccchhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhhcCceeCC
Q 037282            4 SNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR   56 (56)
Q Consensus         4 ~~~~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~~Gf~K~~   56 (56)
                      .++|++|||++|+++++|.+||+++|+|||||||+|||||||+|.+|||+||+
T Consensus         2 ~~~~~shpr~yGkGsr~C~vCg~~~gliRkygL~~CRqCFRe~A~~iGF~K~~   54 (54)
T PTZ00218          2 GHLFNTHPRTYGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR   54 (54)
T ss_pred             CccccCCCCcCCCCCCeeecCCCcchhhhhcCcchhhHHHHHhhHhcCeeecC
Confidence            58999999999999999999999999999999999999999999999999996

>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2e-31  Score=150.39  Aligned_cols=56  Identities=63%  Similarity=1.337  Sum_probs=55.3

Q ss_pred             CCcccchhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhhcCceeCC
Q 037282            1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR   56 (56)
Q Consensus         1 m~~~~~~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~~Gf~K~~   56 (56)
                      |||+|+|++||+++|++++.|.+|++.+|+|+|||||+||+||||.|.+|||.||+
T Consensus         1 mgh~~l~~sh~~kfg~GsrsC~vCsn~~gLIrKYGL~vcr~cfr~~a~digf~k~d   56 (56)
T KOG3506|consen    1 MGHQQLWWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNVCRQCFREYANDIGFIKYD   56 (56)
T ss_pred             CCcccccccCccccCCCCcceeeeccchhHHHHhhhHHhHHHHHhhccccCCccCC
Confidence            99999999999999999999999999999999999999999999999999999986

>PRK05766 rps14P 30S ribosomal protein S14P; Reviewed

Probab=99.93  E-value=7.8e-27  Score=129.91  Aligned_cols=51  Identities=47%  Similarity=1.008  Sum_probs=47.4

Q ss_pred             chhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhhcCceeCC
Q 037282            6 VWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR   56 (56)
Q Consensus         6 ~~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~~Gf~K~~   56 (56)
                      ++..+|+++++++|+|.+|||++|||++||||+||+||||+|.+|||+||+
T Consensus         2 ~~~p~~~~~~r~~nrC~~~Gr~rgvirkf~l~lcR~~FRe~A~~~gf~k~~   52 (52)
T PRK05766          2 YKPPKKRKYGKGARECQRCGRKQGLIRKYGLYLCRQCFREVAPKLGFKKYS   52 (52)
T ss_pred             CCCCCCCCCCCCCceeecCCCCceeHHhhCCcccHHHHHHHHHHhCceecC
Confidence            345677788999999999999999999999999999999999999999996

>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=8.1e-24  Score=121.21  Aligned_cols=48  Identities=46%  Similarity=0.899  Sum_probs=44.5

Q ss_pred             hhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCceeCC
Q 037282            7 WNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVKYR   56 (56)
Q Consensus         7 ~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K~~   56 (56)
                      +..+|+.+++++|+|.+||||+||||||+|  ||+||||+|++   +||+||+
T Consensus        10 ~~p~~~~~~r~~nRC~~cGRprg~~Rkf~l--cR~cfRE~A~~g~ipGv~K~s   60 (61)
T COG0199          10 ALPRPKSPGRGRNRCRRCGRPRGVIRKFGL--CRICFRELAHKGEIPGVKKAS   60 (61)
T ss_pred             cCCCCCccccccccccccCCCccchhhhhh--HHHHHHHHhhccCCCCeEecc
Confidence            455677789999999999999999999999  99999999999   9999985

>PRK08061 rpsN 30S ribosomal protein S14; Reviewed

Probab=99.76  E-value=4.8e-19  Score=101.42  Aligned_cols=47  Identities=40%  Similarity=0.754  Sum_probs=43.7

Q ss_pred             hhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCceeC
Q 037282            7 WNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVKY   55 (56)
Q Consensus         7 ~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K~   55 (56)
                      +.+.||+.++.+|+|.+|||++|+|++|||  ||+||||+|.+   +|++|-
T Consensus        10 ~~~~~k~~~r~~nRC~~tGR~rgvir~fgl--~R~~FRe~A~~G~ipGv~Ka   59 (61)
T PRK08061         10 AKRKPKFKVRAYTRCERCGRPHSVYRKFGL--CRICFRELAYKGQIPGVKKA   59 (61)
T ss_pred             hhcCCCCCcccceeeecCCCCcceeccCCc--cHHHHHHHHHcCcCCCeeec
Confidence            467899999999999999999999999998  99999999999   898874

>PF00253 Ribosomal_S14: Ribosomal protein S14p/S29e; InterPro: IPR001209 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.75  E-value=1e-18  Score=97.33  Aligned_cols=46  Identities=33%  Similarity=0.587  Sum_probs=41.7

Q ss_pred             cCCCC--CCCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCceeCC
Q 037282            9 SHPKT--YGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVKYR   56 (56)
Q Consensus         9 ~~pr~--~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K~~   56 (56)
                      ..|++  .++++|+|.+|||++|+|++|+|  ||++|||+|.+   +||+|++
T Consensus         5 ~~p~~s~~~r~~nrC~~tGR~rgv~r~f~l--sR~~fR~~a~~g~l~G~~KsS   55 (55)
T PF00253_consen    5 KLPRNSSPTRIKNRCVITGRSRGVIRKFGL--SRICFRELASKGLLPGVKKSS   55 (55)
T ss_dssp             SSSSSSSCTGSCSSBSSSCSSSSBETTTSS--BHHHHHHHHHTTSSTTEEES-
T ss_pred             hCCCCCCCCCCCeecccCCCceeeeccccc--cHHHHHHHHHcCCCCCEEeCC
Confidence            45555  59999999999999999999999  99999999999   9999974

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. S14 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S14 is known to be required for the assembly of 30S particles and may also be responsible for determining the conformation of 16S rRNA at the A site. It belongs to a family of ribosomal proteins [, ] that include, bacterial, algal and plant chloroplast, yeast mitochondrial, cyanelle and archael, Methanococcus vannielii S14's, as well as yeast mitochondrial MRP2, yeast YS29A/B and mammalian S29.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_N 2XZM_N 1S1H_N 3IZ6_N 2YKR_N 2QBB_N 3I1Z_N 3OAQ_N 3R8O_N 2Z4K_N ....

>PRK06911 rpsN 30S ribosomal protein S14; Reviewed

Probab=99.63  E-value=1.6e-16  Score=97.72  Aligned_cols=46  Identities=35%  Similarity=0.626  Sum_probs=43.0

Q ss_pred             hcCCCCC--CCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCceeC
Q 037282            8 NSHPKTY--GPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVKY   55 (56)
Q Consensus         8 ~~~pr~~--~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K~   55 (56)
                      .++|+++  ++.+|||.+||||+||||+|||  ||+.|||+|+.   +|.+|-
T Consensus        48 ~~lPrnss~~R~rNRC~~TGR~Rgv~r~FgL--sRi~~Rela~~G~lPGv~Ka   98 (100)
T PRK06911         48 AKLPVNSNPVRYVTRCKQCGRPHAVYRKFNL--CRICLRQQLMVGNIPGGRKS   98 (100)
T ss_pred             HhCCCccCcchhhcccCCCCCCcccccccCc--hHHHHHHHHHcCCCCCeecc
Confidence            5789986  9999999999999999999999  99999999999   898874

>PRK08881 rpsN 30S ribosomal protein S14; Reviewed

Probab=99.57  E-value=8.6e-16  Score=94.35  Aligned_cols=46  Identities=30%  Similarity=0.492  Sum_probs=43.0

Q ss_pred             hcCCCCC--CCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCceeC
Q 037282            8 NSHPKTY--GPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVKY   55 (56)
Q Consensus         8 ~~~pr~~--~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K~   55 (56)
                      ..+|+++  ++.+|||.+|||++|+|++|||  ||+.|||+|+.   +|++|-
T Consensus        49 ~~lPr~ss~tRi~NRC~~TGR~Rgv~r~F~L--sRi~fRela~~G~lpGv~Ks   99 (101)
T PRK08881         49 QKLPRNSSPTRLRNRCELTGRPRGYYRKFGL--SRIKLRELAHRGEIPGVVKA   99 (101)
T ss_pred             HhCCcccchHHHhccccCCCCCCccccCcCc--hHHHHHHHHHcCCCCCeecc
Confidence            5789986  9999999999999999999999  99999999999   898874

>CHL00074 rps14 ribosomal protein S14

Probab=99.56  E-value=1.3e-15  Score=93.45  Aligned_cols=46  Identities=28%  Similarity=0.470  Sum_probs=42.9

Q ss_pred             hcCCCCC--CCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCceeC
Q 037282            8 NSHPKTY--GPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVKY   55 (56)
Q Consensus         8 ~~~pr~~--~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K~   55 (56)
                      .++|+++  ++.+|||.+|||++|||++|||  ||+.|||+|..   +|++|-
T Consensus        48 ~~lpr~ss~tRi~NRC~~TGR~Rgv~r~F~L--sRi~~Re~a~~G~ipGv~Ka   98 (100)
T CHL00074         48 QSLPRNSAPTRLHNRCFLTGRPRGNYRDFGL--SRHVLREMAHACLLPGVTKS   98 (100)
T ss_pred             HhCCcccchHHHhccccCCCCCCccccCcCc--hHHHHHHHHHcCCCCCcccc
Confidence            6789986  9999999999999999999999  99999999998   898874

>KOG1741 consensus Mitochondrial/chloroplast ribosomal protein S14/S29 [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=9.8e-12  Score=77.37  Aligned_cols=45  Identities=24%  Similarity=0.498  Sum_probs=40.8

Q ss_pred             hcCCCCC--CCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCcee
Q 037282            8 NSHPKTY--GPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVK   54 (56)
Q Consensus         8 ~~~pr~~--~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K   54 (56)
                      .++|+++  +++.|+|.-|||++|+++.|+|  ||+.|||+|..   +|..|
T Consensus        51 ~alPrns~ptrI~NRCv~TGR~R~v~r~frL--sR~~FR~~A~~~~LpGv~r  100 (103)
T KOG1741|consen   51 QALPRNSAPTRIKNRCVFTGRPRGVYRDFRL--SRHVFRELADAGALPGVTR  100 (103)
T ss_pred             hcCccccchHHHHHHHHhcCCcccccchhhh--HHHHHHHHHHhccCcCccc
Confidence            4678885  9999999999999999999999  99999999988   77665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	56
3iz6_N	56	Localization Of The Small Subunit Ribosomal Protein		3e-24
2zkq_n	56	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-15
3izb_N	56	Localization Of The Small Subunit Ribosomal Protein		2e-15
2xzm_N	55	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-12
3jyv_N	50	Structure Of The 40s Rrna And Proteins And PE TRNA		7e-12
3zey_8	57	High-resolution Cryo-electron Microscopy Structure		8e-11
3j20_P	56	Promiscuous Behavior Of Proteins In Archaeal Riboso		5e-07
1s1h_N	36	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		3e-06

>pdb|3IZ6|N Chain N, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 56

Iteration: 1
 Score =  106 bits (264), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 47/56 (83%), Positives = 51/56 (91%)
Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGHSNVWNSHPK YG GSR CRVCGN H +IRKYGLMCCRQCFRS+AK+IGF+KYR
Sbjct: 1  MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56

>pdb|2ZKQ|NN Chain n, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 56

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 42/54 (77%)
Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
          MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct: 1  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54

>pdb|3IZB|N Chain N, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 56

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 40/56 (71%)
Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          M H NVW SHP+ YG GSR CRVC +   +IRKYGL  CRQCFR  A +IGF K+R
Sbjct: 1  MAHENVWFSHPRRYGKGSRQCRVCSSHTGLIRKYGLNICRQCFREKANDIGFNKFR 56

>pdb|2XZM|N Chain N, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 55

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 36/53 (67%)
Query: 4  SNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          + +W +HP+ YG  S+ CRVCG    +I KY +M CR+CFR  A  IGFVKYR
Sbjct: 3  NKLWRTHPRNYGKDSKECRVCGARQGLITKYEMMTCRRCFREQAPHIGFVKYR 55

>pdb|3JYV|N Chain N, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 50

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 35/50 (70%)
Query: 5  NVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 54
          NVW SHP+ +G GSR CRVC +   ++RKY L  CRQCFR  A +IGF K
Sbjct: 1  NVWFSHPRRFGKGSRQCRVCSSHTGLVRKYDLNICRQCFREKANDIGFHK 50

>pdb|3ZEY|8 Chain 8, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 57

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1  MGHSNVWNSHPKT-YGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGH   W S  +   G GSR C +C N  A+IRKY L  CRQCFR NA  IGF K R
Sbjct: 1  MGHLEQWRSRQRIGMGKGSRHCVICSNQKAVIRKYELNVCRQCFRENAANIGFSKLR 57

>pdb|3J20|P Chain P, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 56

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKY 55
          M  ++     P+ +G G+R C  CG    IIR  GLM CR CFR  A ++GF KY
Sbjct: 1  MAKADYNKRKPRKFGKGARRCIRCGQYGPIIRIQGLMLCRHCFREVAPKLGFRKY 55

>pdb|1S1H|N Chain N, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 36

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 21 CRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          CRVC +   ++RKY L  CRQCFR  A +IGF KYR
Sbjct: 1  CRVCSSHTGLVRKYDLNICRQCFREKANDIGFHKYR 36

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	56
3iz6_N	56	40S ribosomal protein S29 (S14P); eukaryotic ribos	6e-27
3u5c_D	240	RP13, YS3, 40S ribosomal protein S3; translation,	1e-26
2xzm_N	55	RPS29E; ribosome, translation; 3.93A {Tetrahymena	7e-24
2vqe_N	61	30S ribosomal protein S14 type Z; tRNA-binding, rR	2e-04

>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n Length = 56

 Score = 90.5 bits (225), Expect = 6e-27
 Identities = 47/56 (83%), Positives = 51/56 (91%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          MGHSNVWNSHPK YG GSR CRVCGN H +IRKYGLMCCRQCFRS+AK+IGF+KYR
Sbjct: 1  MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56

>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C* Length = 240

 Score = 90.2 bits (224), Expect = 1e-26
 Identities = 5/56 (8%), Positives = 8/56 (14%)

Query: 1  MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          M             G                  Y  +  R         I   + +
Sbjct: 1  MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQ 56

>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N Length = 55

 Score = 82.9 bits (205), Expect = 7e-24
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query: 4  SNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56
          + +W +HP+ YG  S+ CRVCG    +I KY +M CR+CFR  A  IGFVKYR
Sbjct: 3  NKLWRTHPRNYGKDSKECRVCGARQGLITKYEMMTCRRCFREQAPHIGFVKYR 55

>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ... Length = 61

 Score = 34.1 bits (79), Expect = 2e-04
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 21 CRVCGNPHAIIRKYGLMCCRQCFRSNA 47
          C  CG   ++ R +GL  CR C R  A
Sbjct: 24 CVRCGRARSVYRFFGL--CRICLRELA 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	56
3u5c_d	56	S36, YS29, 40S ribosomal protein S29-A; translatio	100.0
3iz6_N	56	40S ribosomal protein S29 (S14P); eukaryotic ribos	100.0
3j20_P	56	30S ribosomal protein S14P type Z; archaea, archae	100.0
2xzm_N	55	RPS29E; ribosome, translation; 3.93A {Tetrahymena	100.0
2vqe_N	61	30S ribosomal protein S14 type Z; tRNA-binding, rR	99.82
3bbn_N	100	Ribosomal protein S14; small ribosomal subunit, sp	99.68
3r8n_N	100	30S ribosomal protein S14; protein biosynthesis, R	99.64

>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N

Probab=100.00  E-value=3.1e-37  Score=173.41  Aligned_cols=56  Identities=63%  Similarity=1.268  Sum_probs=52.4

Q ss_pred             CCcccchhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhhcCceeCC
Q 037282            1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR   56 (56)
Q Consensus         1 m~~~~~~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~~Gf~K~~   56 (56)
                      |||+|+|++|||++|+++|+|.+|||++|+|||||||+||+||||+|.+|||+||+
T Consensus         1 M~h~~~~~shpr~~G~gs~rC~vcGr~~g~iRkfGl~lcR~cfRe~A~~iGF~K~~   56 (56)
T 3u5c_d            1 MAHENVWFSHPRRYGKGSRQCRVCSSHTGLIRKYGLNICRQCFREKANDIGFNKFR   56 (56)
T ss_dssp             ---CCSSSCCCCSSSGGGCCCTTTCCCSSEECGGGCCEEHHHHHHHHHHHTCBCCC
T ss_pred             CCcccccccCCcccCCCcceeecCCCCcccccccCcchhHHHHHHHHHhcCceecC
Confidence            99999999999999999999999999999999999999999999999999999996

>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n

Probab=100.00  E-value=6.5e-37  Score=171.99  Aligned_cols=56  Identities=84%  Similarity=1.667  Sum_probs=47.5

Q ss_pred             CCcccchhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhhcCceeCC
Q 037282            1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR   56 (56)
Q Consensus         1 m~~~~~~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~~Gf~K~~   56 (56)
                      |||+|+|++|||++|+++|+|.+|||++|+|||||||+||+||||+|.+|||+||+
T Consensus         1 M~h~~~~~sh~r~~G~g~~rC~vcGr~~g~iRkfGL~~cR~cfRe~A~~iGF~k~~   56 (56)
T 3iz6_N            1 MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR   56 (56)
T ss_dssp             --------CCCCCCCCCCCCCSSCCCSCCCTTTTSCTTHHHHHHTTCCSTTCCSCC
T ss_pred             CCccccccCCccccCCCcceeecCCCCcccccccCCcHHHHHHHHHHHhcCceecC
Confidence            99999999999999999999999999999999999999999999999999999996

>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3e-35  Score=165.31  Aligned_cols=56  Identities=43%  Similarity=0.892  Sum_probs=55.4

Q ss_pred             CCcccchhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhhcCceeCC
Q 037282            1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR   56 (56)
Q Consensus         1 m~~~~~~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~~Gf~K~~   56 (56)
                      |+|+|+|+++||++|+++|+|.+|||++|+|||||||+||+||||+|++|||+||+
T Consensus         1 ma~~~~~~~~~r~~grg~~rC~vcGr~~g~iRkfGL~~cR~cfRe~A~~iGF~K~~   56 (56)
T 3j20_P            1 MAKADYNKRKPRKFGKGARRCIRCGQYGPIIRIQGLMLCRHCFREVAPKLGFRKYE   56 (56)
T ss_dssp             CCCCCCSCCSCCSSSSTTCCCSSSCCSSSCCCTTTCCCCHHHHHHHHHHHTCCSCC
T ss_pred             CccccccCCCCcccCCCceEeecCCCCcccccccCChHHHHHHHHHHHhcCcEecC
Confidence            99999999999999999999999999999999999999999999999999999996

>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N

Probab=100.00  E-value=2.9e-35  Score=164.70  Aligned_cols=55  Identities=53%  Similarity=1.213  Sum_probs=52.3

Q ss_pred             CCcccchhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhhcCceeCC
Q 037282            1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR   56 (56)
Q Consensus         1 m~~~~~~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~~Gf~K~~   56 (56)
                      ||| ++|++||+++++++|+|.+|||++|+|||||||+||+||||+|.+|||+||+
T Consensus         1 M~~-~~~~~~~~~~~r~~nrC~~cGr~rg~iRkfgl~lcR~cFRe~A~~~Gf~K~~   55 (55)
T 2xzm_N            1 MPN-KLWRTHPRNYGKDSKECRVCGARQGLITKYEMMTCRRCFREQAPHIGFVKYR   55 (55)
T ss_dssp             --C-CCCSCSCTTSSGGGCCCTTTCCSSTTCCCSSSCCCHHHHHHHHHHHTCBCCC
T ss_pred             CCc-cccccCCCCCCCCceEeecCCCCcchHHHhCCchhhHHHHHHHHHhCceecC
Confidence            999 9999999999999999999999999999999999999999999999999996

>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...

Probab=99.82  E-value=3.9e-21  Score=108.90  Aligned_cols=47  Identities=32%  Similarity=0.576  Sum_probs=43.2

Q ss_pred             hhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCceeC
Q 037282            7 WNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVKY   55 (56)
Q Consensus         7 ~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K~   55 (56)
                      +..+|+.+++++|+|.+|||++|+||+|||  ||+||||+|.+   +|++|-
T Consensus        10 ~~~~~~~~~r~~nRC~~~GR~rg~iRkfgl--cR~~FRe~A~~g~lpGv~Ka   59 (61)
T 2vqe_N           10 AKRTPKFKVRAYTRCVRCGRARSVYRFFGL--CRICLRELAHKGQLPGVRKA   59 (61)
T ss_dssp             CCSCCSSGGGCCCCCTTTCCCTTCCTTTSS--CHHHHHHHHHHTCSSSCEEC
T ss_pred             hccCCCCCCCCceeeecCCCCceeeccCce--eHHHHHHHHhCCccCCeEee
Confidence            356788889999999999999999999998  99999999999   898874

>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.68  E-value=1.1e-17  Score=102.05  Aligned_cols=46  Identities=28%  Similarity=0.479  Sum_probs=42.4

Q ss_pred             hcCCCCC--CCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCceeC
Q 037282            8 NSHPKTY--GPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVKY   55 (56)
Q Consensus         8 ~~~pr~~--~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K~   55 (56)
                      ..+|+++  ++++|+|.+||||+|+|++|||  ||+||||+|..   +|++|=
T Consensus        48 ~~lPRns~~~r~~nRC~~tGR~rg~~r~fgl--sR~~fRe~a~~g~lpGv~Ks   98 (100)
T 3bbn_N           48 QSPPRNSAPARLHRRCFLTGRPRANIRDFGL--SGHILREMVHTCLLPGATRS   98 (100)
T ss_dssp             CCSCSSCCGGGCCCCCSSSCCSSSBCTTTCS--BTTHHHHHHTTTCSSSCEEC
T ss_pred             HhCCcccccccccccccCCCCCceeecccCc--HHHHHHHHHHcCCCCCeeec
Confidence            4689985  9999999999999999999999  99999999999   888873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	56
d2uubn1	60	g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus t	0.002

>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]} Length = 60

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein S14
domain: Ribosomal protein S14
species: Thermus thermophilus [TaxId: 274]

 Score = 30.4 bits (69), Expect = 0.002
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 21 CRVCGNPHAIIRKYGLMCCRQCFRSNA 47
          C  CG   ++ R +GL  CR C R  A
Sbjct: 23 CVRCGRARSVYRFFGL--CRICLRELA 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	56
d2uubn1	60	Ribosomal protein S14 {Thermus thermophilus [TaxId	99.7
d2qaln1	100	Ribosomal protein S14 {Escherichia coli [TaxId: 56	99.64

>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein S14
domain: Ribosomal protein S14
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=3.6e-18  Score=95.42  Aligned_cols=47  Identities=32%  Similarity=0.576  Sum_probs=43.6

Q ss_pred             hhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCceeC
Q 037282            7 WNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVKY   55 (56)
Q Consensus         7 ~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K~   55 (56)
                      ....|+++++.+|||.+|||++|+|++|||  ||++|||+|..   +|++|-
T Consensus         9 ~~~~pk~~tR~~NRC~~tGR~Rg~~r~F~l--sR~~fR~la~~G~ipGv~Ka   58 (60)
T d2uubn1           9 AKRTPKFKVRAYTRCVRCGRARSVYRFFGL--CRICLRELAHKGQLPGVRKA   58 (60)
T ss_dssp             GCSCCSSGGGCCCCCTTTCCCSSBCTTTSC--BHHHHHHHHHHTCSTTCEEC
T ss_pred             HhcCCCCCcccceeccCCCCCceeeccccc--HHHHHHHHHHcCCCCCeeec
Confidence            456899999999999999999999999999  99999999999   898874

>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein S14
domain: Ribosomal protein S14
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=5.7e-17  Score=97.11  Aligned_cols=46  Identities=33%  Similarity=0.586  Sum_probs=42.8

Q ss_pred             hcCCCCC--CCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCceeC
Q 037282            8 NSHPKTY--GPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVKY   55 (56)
Q Consensus         8 ~~~pr~~--~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K~   55 (56)
                      ..+|+++  ++.+|||.+||||+|+|++|||  ||++|||+|..   +|++|-
T Consensus        48 ~~LPrnss~tRirnRC~~TGR~Rg~~r~f~l--sRi~fR~la~~G~lpGv~Ka   98 (100)
T d2qaln1          48 QTLPRDSSPSRQRNRCRQTGRPHGFLRKFGL--SRIKVREAAMRGEIPGLKKA   98 (100)
T ss_dssp             TTTTSTTCSTTCCCCCSSSCCSSSCBTTTTB--CHHHHHHHHHHTCSTTCEEC
T ss_pred             hcCCccchhHHHHhhhccCCCcceeeccccc--hHHHHHHHHHcCCCCCeecc
Confidence            5689996  9999999999999999999999  99999999999   898874