Citrus Sinensis ID: 037293

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MPLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKKKEGART
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEccHHHHHHccccccccccHHcHHHHHHHHHHHHHHHHcccccccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEEccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccEEccccHHHHcccccc
Coil and Loop (DISEMBL)
mplpvndhrnlvnagRVTFAGWVFESVesksrfsfsfkngldtKAEKSRKQLKERKNMAKKIggvkktkasdaakkkegart
Flexible Loop (DISEMBL)
mplpvndhrnlvnagrVTFAGWVFESVEsksrfsfsfkngldtkaeksrkqlkerknmakkiggvkktkasdaakkkegart
Low Complexity Region (SEG)
MPLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKIGGVkktkasdaakkkEGART
Disordered region (IsUnstruct)
*********NLVNAGRVTFAGWVFESVE******************************************************
Disordered Region (DISOPRED)
*PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFSFK********************************************
Disordered Region (DISEMBL)
MPLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAK**********************
Disordered Region (DISPRO)
**LPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFSFKNGLDTKAEKSRKQLKERKNM*KK*G*VKKTKAS***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKKKEGART
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q9SS17	133	40S ribosomal protein S24	yes	no	0.670	0.413	0.620	6e-11
Q8LC83	133	40S ribosomal protein S24	yes	no	0.829	0.511	0.521	8e-11

>sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 44/58 (75%), Gaps = 3/58 (5%)

Query: 22  WVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKK 76
            ++++VES  +F   ++   NGLDTK EKSRKQ+KERKN AKKI GVKKTKA DA KK
Sbjct: 76  LIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDAKKK 133

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 9   RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
           R     G+ +  G ++++VE+  +F   ++   NGLDTK EKSRKQ+KERKN AKKI GV
Sbjct: 63  RTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122

Query: 66  KKTKASDAAKK 76
           KKTKA D  KK
Sbjct: 123 KKTKAGDTKKK 133

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
313586511	137	40S ribosomal protein S24A [Hevea brasil	0.817	0.489	0.585	3e-11
255642159	137	unknown [Glycine max]	0.817	0.489	0.585	5e-11
118484160	111	unknown [Populus trichocarpa]	0.890	0.657	0.552	6e-11
313586513	137	40S ribosomal protein S24B [Hevea brasil	0.817	0.489	0.571	6e-11
449442901	137	PREDICTED: 40S ribosomal protein S24-2-l	0.817	0.489	0.571	7e-11
307136061	137	40S ribosomal protein s24 [Cucumis melo	0.817	0.489	0.571	7e-11
351726138	137	uncharacterized protein LOC100499673 [Gl	0.817	0.489	0.571	7e-11
449449533	137	PREDICTED: 40S ribosomal protein S24-2-l	0.817	0.489	0.571	8e-11
351721636	137	uncharacterized protein LOC100305568 [Gl	0.817	0.489	0.571	8e-11
388491940	137	unknown [Lotus japonicus]	0.817	0.489	0.571	9e-11

>gi|313586511|gb|ADR71266.1| 40S ribosomal protein S24A [Hevea brasiliensis]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 9   RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
           R     G+ T  G +++SVE+  ++   ++   NGLDTK EKSRKQLKERKN AKKI GV
Sbjct: 63  RTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGV 122

Query: 66  KKTKASDAAK 75
           KKTKASDAAK
Sbjct: 123 KKTKASDAAK 132

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642159|gb|ACU21344.1| unknown [Glycine max]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 9   RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
           R     G+ T  G V++SVE+  ++   ++   NGLDTK EKSRKQ+KERKN AKKI GV
Sbjct: 63  RTHFGGGKSTGFGLVYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 122

Query: 66  KKTKASDAAK 75
           KKTKASDAAK
Sbjct: 123 KKTKASDAAK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484160|gb|ABK93962.1| unknown [Populus trichocarpa]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 52/76 (68%), Gaps = 3/76 (3%)

Query: 5   VNDHRNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKK 61
           V+  R     G+ T  G +++SVES  ++   ++   NGL TK EKSRKQLKERKN AKK
Sbjct: 36  VSKFRTHFGGGKSTGFGLIYDSVESAKKYEPKYRLIRNGLATKVEKSRKQLKERKNRAKK 95

Query: 62  IGGVKKTKASDAAKKK 77
           + GVKKTKA DAAKKK
Sbjct: 96  VRGVKKTKAGDAAKKK 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586513|gb|ADR71267.1| 40S ribosomal protein S24B [Hevea brasiliensis] gi|313586515|gb|ADR71268.1| 40S ribosomal protein S24C [Hevea brasiliensis]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 9   RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
           R     G+ T  G +++SVE+  ++   ++   NGLDTK EKSRKQLKERKN AKK+ GV
Sbjct: 63  RTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKVRGV 122

Query: 66  KKTKASDAAK 75
           KKTKASDAAK
Sbjct: 123 KKTKASDAAK 132

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442901|ref|XP_004139219.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus] gi|449482936|ref|XP_004156448.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 9   RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
           R     G+ T  G +++SVE+  ++   ++   NGLDTK EKSRKQ+KERKN AKKI GV
Sbjct: 63  RTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 122

Query: 66  KKTKASDAAK 75
           KKTKASDAAK
Sbjct: 123 KKTKASDAAK 132

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136061|gb|ADN33912.1| 40S ribosomal protein s24 [Cucumis melo subsp. melo]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 9   RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
           R     G+ T  G +++SVE+  ++   ++   NGLDTK EKSRKQ+KERKN AKKI GV
Sbjct: 63  RTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 122

Query: 66  KKTKASDAAK 75
           KKTKASDAAK
Sbjct: 123 KKTKASDAAK 132

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726138|ref|NP_001238140.1| uncharacterized protein LOC100499673 [Glycine max] gi|255625693|gb|ACU13191.1| unknown [Glycine max]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 9   RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
           R     G+ T  G +++SVE+  ++   ++   NGLDTK EKSRKQ+KERKN AKKI GV
Sbjct: 63  RTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 122

Query: 66  KKTKASDAAK 75
           KKTKASDAAK
Sbjct: 123 KKTKASDAAK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449533|ref|XP_004142519.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus] gi|449518360|ref|XP_004166210.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 9   RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
           R     G+ T  G +++SVE+  ++   ++   NGLDTK EKSRKQ+KERKN AKKI GV
Sbjct: 63  RTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 122

Query: 66  KKTKASDAAK 75
           KKTKASDAAK
Sbjct: 123 KKTKASDAAK 132

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721636|ref|NP_001237216.1| uncharacterized protein LOC100305568 [Glycine max] gi|255625937|gb|ACU13313.1| unknown [Glycine max]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 9   RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
           R     G+ T  G +++SVE+  ++   ++   NGLDTK EKSRKQ+KERKN AKKI GV
Sbjct: 63  RTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 122

Query: 66  KKTKASDAAK 75
           KKTKASDAAK
Sbjct: 123 KKTKASDAAK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491940|gb|AFK34036.1| unknown [Lotus japonicus]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 9   RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
           R     G+ T  G +++S+E+  ++   ++   NGLDTK EKSRKQLKERKN AKKI GV
Sbjct: 63  RTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGV 122

Query: 66  KKTKASDAAK 75
           KKTKASDAAK
Sbjct: 123 KKTKASDAAK 132

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:2114830	133	AT3G04920 [Arabidopsis thalian	0.695	0.428	0.5	2.2e-09
TAIR|locus:2143784	133	AT5G28060 [Arabidopsis thalian	0.695	0.428	0.483	4.7e-09
ZFIN|ZDB-GENE-040109-5	132	rps24 "ribosomal protein S24"	0.621	0.386	0.370	0.00057
CGD|CAL0005300	135	RPS24 [Candida albicans (taxid	0.682	0.414	0.383	0.00093

TAIR|locus:2114830 AT3G04920 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query:     9 RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
             R     G+ +  G ++++VES  +F   ++   NGLDTK EKSRKQ+KERKN AKKI GV
Sbjct:    63 RTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2143784 AT5G28060 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query:     9 RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
             R     G+ +  G ++++VE+  +F   ++   NGLDTK EKSRKQ+KERKN AKKI GV
Sbjct:    63 RTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005730 "nucleolus" evidence=IBA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

ZFIN|ZDB-GENE-040109-5 rps24 "ribosomal protein S24" [Danio rerio (taxid:7955)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query:    15 GRVTFAGWVFESVE--SKSRFSFSF-KNGLDTKAEKSRKQLKERKNMAKKIGGV 65
             G+ T  G +++S++   K+   +   ++GL  K + SRKQ KERKN  KK+ G+
Sbjct:    67 GKTTGFGMIYDSLDYAKKNEPKYRLQRHGLYEKKKTSRKQRKERKNRMKKVRGI 120

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0006414 "translational elongation" evidence=IBA

GO:0005730 "nucleolus" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

CGD|CAL0005300 RPS24 [Candida albicans (taxid:5476)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query:     9 RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEK-SRKQLKERKNMAKKIGG 64
             R     G+ T  G +++SV    RF  +++    GL  K EK SR+Q K++KN  KKI G
Sbjct:    61 RTQFGGGKSTGFGLIYQSVADAKRFEPAYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFG 120


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        70   0.00091  102 3  11 23  0.49    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  444 (47 KB)
  Total size of DFA:  76 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.86u 0.11s 9.97t   Elapsed:  00:00:00
  Total cpu time:  9.86u 0.11s 9.97t   Elapsed:  00:00:00
  Start:  Sat May 11 07:37:51 2013   End:  Sat May 11 07:37:51 2013

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	82
PTZ00071	132	PTZ00071, PTZ00071, 40S ribosomal protein S24; Pro	0.001

>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 15  GRVTFAGWVFESVESKSRFSFSF---KNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKAS 71
           G+ T  G +++++ +  +F   +   + GL  K +  RK  KE KN  KK+ G +KTK S
Sbjct: 69  GKTTGFGLIYDNLAALKKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVS 128

Query: 72  DAAK 75
              K
Sbjct: 129 GKKK 132

Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
KOG3424	132	consensus 40S ribosomal protein S24 [Translation,	99.98
PTZ00071	132	40S ribosomal protein S24; Provisional	99.97
PRK01178	99	rps24e 30S ribosomal protein S24e; Reviewed	99.75
PF01282	84	Ribosomal_S24e: Ribosomal protein S24e; InterPro:	99.73
COG2004	107	RPS24A Ribosomal protein S24E [Translation, riboso	99.65

>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]

Probab=99.98  E-value=3.3e-33  Score=194.64  Aligned_cols=75  Identities=40%  Similarity=0.440  Sum_probs=72.2

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccccchhHHHHHHhhhhhhccchhhhhcchHHhh
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKK   76 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~k~~Rkq~Ke~knr~KKvrGt~k~k~~~~~kk   76 (82)
                      +||||||+||||||+|||||+||||+|+|++|||+   +|+||.|+.+++|+||||++||++|++||.|++++.++++
T Consensus        54 ~V~vfgfrt~~GggkstgfalIYdsve~akkfEpkyrl~r~gl~e~~kt~RkqrKerknr~kKi~Gt~K~~~~~~~k~  131 (132)
T KOG3424|consen   54 AVFVFGFRTHFGGGKSTGFALIYDSVEYAKKFEPKYRLVRLGLAEKIKTSRKQRKERKNRMKKIFGTGKRKAKKAKKK  131 (132)
T ss_pred             eEEEEEeeeccCCcccceeeeeeehHHHHHhcCcceeeeecccccccccHHHHHHHHhhccchheeHHHHHhhhhhcc
Confidence            69999999999999999999999999999999999   9999999998899999999999999999999999877765

>PTZ00071 40S ribosomal protein S24; Provisional

Probab=99.97  E-value=5.3e-31  Score=184.20  Aligned_cols=72  Identities=28%  Similarity=0.385  Sum_probs=68.7

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccccchhHHHHHHhhhhhhccchhhhhcchH
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDA   73 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~k~~Rkq~Ke~knr~KKvrGt~k~k~~~~   73 (82)
                      +||||||+|+||+|+|+|||+||||+|+|++|||+   +||+|.+..+.+|+|+||+|||+||+||++++++..+
T Consensus        56 ~Vvv~~~~T~fG~g~StG~a~IYds~e~~kk~Epk~~l~Rngl~~~~~~~rk~rke~knr~kk~rg~~k~k~~~~  130 (132)
T PTZ00071         56 TIVLFGFKTKFGGGKTTGFGLIYDNLAALKKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGK  130 (132)
T ss_pred             EEEEEccEecCCCceEEEEEEEECCHHHHHhhCchheeeecCccccCccchHHHHHHHhhhhhhccchhhhhhhc
Confidence            69999999999999999999999999999999999   9999999888899999999999999999999988544

>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed

Probab=99.75  E-value=7.9e-19  Score=117.54  Aligned_cols=44  Identities=11%  Similarity=0.137  Sum_probs=41.9

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccc
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKA   45 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~   45 (82)
                      +||||||+|+||+|+|+|||+||||+|+|++|||+   .||++.+++
T Consensus        50 ~vvv~~~~t~fG~g~s~G~a~IYds~e~~kk~Epk~~l~Rn~~~~~~   96 (99)
T PRK01178         50 LVVVRKIKTEYGMGKSKGYAKVYDDKERARKIEPKYILERNKIEEEE   96 (99)
T ss_pred             EEEEEccCccCCCceEEEEEEEECCHHHHHhhCchheeeecCccccc
Confidence            59999999999999999999999999999999999   999998764

>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.73  E-value=2.3e-18  Score=111.60  Aligned_cols=49  Identities=27%  Similarity=0.362  Sum_probs=43.9

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCccccc-chhH
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKAE-KSRK   50 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~k-~~Rk   50 (82)
                      +|||++|+|+||+|.|+|||+||||+|+|++|||+   .||++.++.. .+|+
T Consensus        32 ~ivv~~~~t~fG~~~s~g~a~IYd~~e~~kk~Ep~~~l~R~~~~e~~~~~~r~   84 (84)
T PF01282_consen   32 LIVVFGIKTEFGGGKSTGFAKIYDSAEALKKFEPKYRLKRNGLEEKKEKEGRK   84 (84)
T ss_dssp             CEEEEEEEESSSSSEEEEEEEEESSHHHHHHHSTHHHHHHTTSSSS-S-S-HH
T ss_pred             eEEEeccEecCCCceEEEEEEEeCCHHHHHHhCcHHHhHhcCccccccccccC
Confidence            69999999999999999999999999999999999   9999999864 4553

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....

>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=1.3e-16  Score=108.70  Aligned_cols=52  Identities=21%  Similarity=0.242  Sum_probs=48.7

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccccchhHHHHHHhhh
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKAEKSRKQLKERKNM   58 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~k~~Rkq~Ke~knr   58 (82)
                      +|+|++++|+||+|+|+|||+||||.+.|++|||+   +||+.     ..+.+++|.+||
T Consensus        51 ~VvV~~ikt~fG~~~s~g~akIY~s~e~~~~iEp~yiL~Rn~~-----~~~~~~eE~e~r  105 (107)
T COG2004          51 LVVVDYIKTEFGKGRSKGYAKIYDSVERAKKIEPEYILERNGG-----AERQEAEEAENR  105 (107)
T ss_pred             eEEEEehhhhcCCcceeEEEEEECCHHHHHhcCcceEEEeccc-----hhhhhhHhhhcc
Confidence            68999999999999999999999999999999999   99998     467888888888

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
3iz6_U	138	Localization Of The Small Subunit Ribosomal Protein		1e-06

>pdb|3IZ6|U Chain U, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 138

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 9   RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
           R     G+ T  G +++++++  ++   ++   NGL TK EKSRKQ+KERKN AKKI GV
Sbjct: 67  RTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGV 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
3iz6_U	138	40S ribosomal protein S24 (S24E); eukaryotic ribos	7e-07
2xzm_P	149	RPS24E; ribosome, translation; 3.93A {Tetrahymena	6e-06
3u5c_Y	135	RP50, 40S ribosomal protein S24-A; translation, ri	8e-05

>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 138

 Score = 43.0 bits (101), Expect = 7e-07
 Identities = 32/40 (80%), Positives = 34/40 (85%)

Query: 38  KNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKKK 77
           +NGL TK EKSRKQ+KERKN AKKI GVKKTKA DA KKK
Sbjct: 99  RNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138

>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P Length = 149

 Score = 40.4 bits (94), Expect = 6e-06
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 38  KNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKKKE 78
           K  +  +   +R+  KE K   K+  G   TK     K   
Sbjct: 91  KVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDT 131

>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y Length = 135

 Score = 37.2 bits (86), Expect = 8e-05
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 38  KNGLDTKAEK-SRKQLKERKNMAKKIGGVKKTKASDAAKKK 77
           + GL  K EK SR+Q K++KN  KKI G  K  A   A++ 
Sbjct: 93  RYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
3iz6_U	138	40S ribosomal protein S24 (S24E); eukaryotic ribos	99.98
3u5c_Y	135	RP50, 40S ribosomal protein S24-A; translation, ri	99.98
2xzm_P	149	RPS24E; ribosome, translation; 3.93A {Tetrahymena	99.97
1ywx_A	102	30S ribosomal protein S24E; GFT MRR16, nesgc, stru	99.81
1xn9_A	101	30S ribosomal protein S24E; beta+alpha, GFT struct	99.8
2g1d_A	98	30S ribosomal protein S24E; complete proteome, rib	99.8
2v94_A	107	RPS24, 30S ribosomal protein S24E; ribonucleoprote	99.8

>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.98  E-value=1.8e-34  Score=201.81  Aligned_cols=75  Identities=48%  Similarity=0.645  Sum_probs=39.4

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccccchhHHHHHHhhhhhhccchhhhhcchHHhh
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKK   76 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~k~~Rkq~Ke~knr~KKvrGt~k~k~~~~~kk   76 (82)
                      +||||||+|+||+|+|+|||+||||+|+|++|||+   +||+|+|+.++||+|+||++||+||+|||+|+++++++++
T Consensus        60 ~VvV~g~rT~fGggkstGfa~IYds~d~aKk~EPkyrL~R~gl~ek~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~  137 (138)
T 3iz6_U           60 CIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKK  137 (138)
T ss_dssp             SCCCCCCCCCSSCSCCCCCCCCSSCHHHHHSSCCCBTTTTTCC-----------------------------------
T ss_pred             EEEEEeeEecCCCceEEEEEEEeCCHHHHHhcCchheEeeccccccccccHHHHHHHHhcchhhcchheeeccccccC
Confidence            59999999999999999999999999999999999   9999999988899999999999999999999999988755

>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y

Probab=99.98  E-value=1.8e-33  Score=196.15  Aligned_cols=75  Identities=35%  Similarity=0.456  Sum_probs=71.3

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccccc-hhHHHHHHhhhhhhccchhhhhcchHHhh
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKAEK-SRKQLKERKNMAKKIGGVKKTKASDAAKK   76 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~k~-~Rkq~Ke~knr~KKvrGt~k~k~~~~~kk   76 (82)
                      .||||||+|+||+|+|+|||+||||+|+|++|||+   +||+|+|+.++ ||+|+||+|||+||+|||+|++++++.++
T Consensus        54 ~VvV~g~rT~fG~gkstGfa~IYds~d~akk~EPkyrL~R~gl~ek~~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~  132 (135)
T 3u5c_Y           54 AVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR  132 (135)
T ss_dssp             GEEEEEEEECTTSSEEEEEEEEESSHHHHHHHSCHHHHHHHTSSCCCCCSCHHHHHHHHHHHHTCCSCSHHHHHHHHHH
T ss_pred             EEEEEeeEeccCCceEEEEEEEeCCHHHHHhcCchheEeeccccccccCccHHHHHHHHhcchhhcchhhhhccccccc
Confidence            59999999999999999999999999999999999   99999999885 99999999999999999999999877654

>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P

Probab=99.97  E-value=4.6e-33  Score=196.79  Aligned_cols=77  Identities=18%  Similarity=0.173  Sum_probs=73.0

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccccchhHHHHHHhhhhhhccchhhhhcchHHhhhc
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKKKE   78 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~k~~Rkq~Ke~knr~KKvrGt~k~k~~~~~kk~~   78 (82)
                      +||||||+|+||+|+|+|||+||||+|+|++|||+   +||+|.|+.++||+|+||++||+||+|||+|++++++++++.
T Consensus        52 ~VvV~g~rT~fGggkStGfa~IYDs~e~aKk~EPkyrL~Rngl~ek~~~sRkqrKe~knr~kkvrGt~k~~~~~~~k~~~  131 (149)
T 2xzm_P           52 NVVVYGFSTQYGGGKSTGFALVYDNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDT  131 (149)
T ss_dssp             GEEEEEECCCSSSSEEEEEEEEESCHHHHHHHSCHHHHHHTTSSCCCCCHHHHHHHHHHHHTTSCHHHHHHHHTTSCSCC
T ss_pred             EEEEEeeEecCCCceEEEEEEEeCCHHHHHhhCchheeeeccccccccCcHHHHHHHHhhhhhhcchhhhhcccccccch
Confidence            59999999999999999999999999999999999   999999998889999999999999999999999988777643

>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3

Probab=99.81  E-value=1.1e-20  Score=126.19  Aligned_cols=43  Identities=9%  Similarity=0.081  Sum_probs=41.5

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCccc
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTK   44 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek   44 (82)
                      +||||||+|+||+|+|+|||+||||+|+|++|||+   +||++.++
T Consensus        49 ~Vvv~~~~T~fG~gkstG~a~IYds~e~akk~Epky~L~R~gl~e~   94 (102)
T 1ywx_A           49 VLVVDTLDQIFGKLEAEGYAKIYNDEKAMATIETKSVLEKNKIEEE   94 (102)
T ss_dssp             TEEEEEEEECSSSSEEEEEEEECSCHHHHHHSSCHHHHHHSCSCCC
T ss_pred             EEEEEccEecCCCceEEEEEEEECCHHHHHhhCchhheeecCccch
Confidence            69999999999999999999999999999999999   99999875

>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3

Probab=99.80  E-value=1.8e-20  Score=124.84  Aligned_cols=43  Identities=7%  Similarity=0.032  Sum_probs=41.5

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCccc
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTK   44 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek   44 (82)
                      +||||||+|+||+|+|+|||+||||+|+|++|||+   +||++.++
T Consensus        49 ~Vvv~~~~t~fG~gkstG~a~IYds~e~akk~Epky~L~R~g~~e~   94 (101)
T 1xn9_A           49 LLVIQRIKTEYGMQESKGYAKLYEDADRMKQVEQEYVLKRNAVPGS   94 (101)
T ss_dssp             TEEEEEEEECSSSSEEEEEEEECSCHHHHHHHHTGGGCCCCSCCCC
T ss_pred             EEEEEeeEecCCCceEEEEEEEECCHHHHHhhCchheeeecCcccc
Confidence            69999999999999999999999999999999999   99999876

>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3

Probab=99.80  E-value=1.8e-20  Score=124.23  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=41.9

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccc
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKA   45 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~   45 (82)
                      +||||||+|+||+|+|+|||+||||+|+|++|||+   +||++.+++
T Consensus        50 ~vvv~~~~t~fG~gks~G~a~IYds~e~~kk~Epky~l~R~~~~~~~   96 (98)
T 2g1d_A           50 LVIVDNNKQLTGKHEIEGYTKIYADKPSAMLYEPDYELIRNGLKQKE   96 (98)
T ss_dssp             TEECCCCCCCSSSSEEEEEEEEESHHHHHHHHCTTSCSCSSCCCSSC
T ss_pred             EEEEEeeEecCCCceEEEEEEEECCHHHHHhhCcceeeeecCccccc
Confidence            69999999999999999999999999999999999   999998763

>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3

Probab=99.80  E-value=2.4e-20  Score=125.30  Aligned_cols=44  Identities=7%  Similarity=-0.001  Sum_probs=39.2

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccc
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKA   45 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~   45 (82)
                      +||||||+|+||+|+|+|||+||||+|+|++|||+   +||++.+++
T Consensus        58 ~Vvv~~~~T~fG~gkstG~a~IYds~e~akk~Epky~L~R~g~~e~~  104 (107)
T 2v94_A           58 TTVIQYIRSYFGSYKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKK  104 (107)
T ss_dssp             GEEEEEEECCTTCSEEEEEEEEESSHHHHHHHSCHHHHHHTTC----
T ss_pred             EEEEEeeEecCCCceEEEEEEEECCHHHHHhhCchheeeecCccccc
Confidence            58999999999999999999999999999999999   999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d2g1da1	98	Ribosomal protein S24e {Thermoplasma acidophilum [	99.72
d1ywxa1	102	Ribosomal protein S24e {Methanococcus maripaludis	99.72
d1xn9a_	101	Ribosomal protein S24e {Methanosarcina mazei [TaxI	99.69
d2v94a1	93	Ribosomal protein S24e {Pyrococcus abyssi [TaxId:	99.68

>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.72  E-value=1.4e-18  Score=113.58  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=42.1

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccc
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKA   45 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~   45 (82)
                      .||||+|+|+||+|+|+|||+||||.|+|++|||+   .||++.+++
T Consensus        50 ~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk~Ep~y~l~R~~~~~~~   96 (98)
T d2g1da1          50 LVIVDNNKQLTGKHEIEGYTKIYADKPSAMLYEPDYELIRNGLKQKE   96 (98)
T ss_dssp             TEECCCCCCCSSSSEEEEEEEEESHHHHHHHHCTTSCSCSSCCCSSC
T ss_pred             EEEEEcCEecCCCceEEEEEEEECCHHHHHhhCchhhhhhcCcchhc
Confidence            58999999999999999999999999999999999   999998864

>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.72  E-value=9.3e-19  Score=115.16  Aligned_cols=46  Identities=13%  Similarity=0.117  Sum_probs=43.3

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccccc
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKAEK   47 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~k~   47 (82)
                      +||||+|+|+||+|+|+|||+||||.|+|++|||+   .||++.++...
T Consensus        49 ~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk~Ep~y~l~R~~~~~~~e~   97 (102)
T d1ywxa1          49 VLVVDTLDQIFGKLEAEGYAKIYNDEKAMATIETKSVLEKNKIEEEAEA   97 (102)
T ss_dssp             TEEEEEEEECSSSSEEEEEEEECSCHHHHHHSSCHHHHHHSCSCCCCSC
T ss_pred             EEEEEcCEecCCCCeEEEEEEEECCHHHHHhhCchheeeecCccccccc
Confidence            69999999999999999999999999999999999   99999987554

>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=5.2e-18  Score=111.31  Aligned_cols=47  Identities=6%  Similarity=0.040  Sum_probs=43.1

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccccch
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKAEKS   48 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~k~~   48 (82)
                      +|||++|+|+||+|+|+|||+||||.|+|++|||+   .||++.+.+..+
T Consensus        49 ~vvv~~~~t~fG~~~stG~a~IYd~~e~~k~~Ep~y~l~R~~~~~~~~~~   98 (101)
T d1xn9a_          49 LLVIQRIKTEYGMQESKGYAKLYEDADRMKQVEQEYVLKRNAVPGSETEG   98 (101)
T ss_dssp             TEEEEEEEECSSSSEEEEEEEECSCHHHHHHHHTGGGCCCCSCCCCCCCC
T ss_pred             EEEEEcCcccCCCceEEEEEEEECCHHHHHhhCchheeeecCcccccccc
Confidence            69999999999999999999999999999999999   999988765433

>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.68  E-value=7.9e-18  Score=108.96  Aligned_cols=41  Identities=5%  Similarity=-0.023  Sum_probs=38.9

Q ss_pred             CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCc
Q 037293            2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLD   42 (82)
Q Consensus         2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~   42 (82)
                      +|||++|+|+||+|+|||||+||||.|+|++|||+   .||||+
T Consensus        50 ~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk~Ep~y~l~R~~li   93 (93)
T d2v94a1          50 TTVIQYIRSYFGSYKSKGYAKYYYDKDRMLYIEPEYILIRDGII   93 (93)
T ss_dssp             GEEEEEEECCTTCSEEEEEEEEESSHHHHHHHSCHHHHHHTTC-
T ss_pred             EEEEEeCccCCCCceEEEEEEEECCHHHHHhhChHHhhhhcccC
Confidence            58999999999999999999999999999999999   999984